BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00023059
         (1559 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   450   e-156
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   440   e-152
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   445   e-152
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   436   e-152
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   431   e-150
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  437   e-150
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   437   e-150
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   437   e-150
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   431   e-150
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   426   e-149
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   431   e-149
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   432   e-149
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   424   e-149
gb|AAB82754.1| retrofit [Oryza longistaminata]                        431   e-148
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   428   e-148
ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846...   421   e-148
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   427   e-148
emb|CCH50966.1| T4.5 [Malus x robusta]                                443   e-147
dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|...   421   e-146
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...   421   e-146

>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  450 bits (1157), Expect(2) = e-156
 Identities = 223/404 (55%), Positives = 287/404 (71%), Gaps = 2/404 (0%)
 Frame = -2

Query: 1552 YITTSAVPEEPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKT 1373
            Y   +A   EP+S S+     +WR AM  EF AL   NTW+LVPP   +N++  +W+ K 
Sbjct: 915  YGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKV 974

Query: 1372 KHLSDGSIE*RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDV 1193
            K+ +DGSI+  KARLVAKG+ Q  G+DY +TFS V+K +TIRLVLS+A+S  WS++QLDV
Sbjct: 975  KYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDV 1034

Query: 1192 QNAFLHGHLDEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGF 1013
            QNAFLHG L+E V+M QPPGF     PNY C L ++LYGLKQ PRAWY+RLS +L  LGF
Sbjct: 1035 QNAFLHGILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGF 1094

Query: 1012 VISKSDTSLFIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYF 833
            V SK+D SLFIY   S  +Y LVYVDDI+ TGS+   +  +++ L +DF +K LGDLHYF
Sbjct: 1095 VPSKADVSLFIYNAHSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYF 1154

Query: 832  LGLECRRDSFGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDST--SFEDPTL 659
            LG+E  R   GL + Q KY  DLLK+  M  CK V  P++ S KLSA   T  S E+ T 
Sbjct: 1155 LGIEVHRKGDGLLLCQEKYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTK 1214

Query: 658  YRSVVGSLQYLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPS 479
            YRSVVG+LQYL  TRPDL++++NRVCQ++HAP   HW +VKRILR ++ T+  GL ++PS
Sbjct: 1215 YRSVVGALQYLTLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPS 1274

Query: 478  TTPSLVAYTDADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
             +  L A++DADW GCPDDRKSTGGY +F G NL+ W+SKKQ+T
Sbjct: 1275 LSLMLSAFSDADWAGCPDDRKSTGGYALFLGPNLISWNSKKQST 1318



 Score =  131 bits (329), Expect(2) = e-156
 Identities = 61/107 (57%), Positives = 82/107 (76%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKA+A+AT E++WLQSL+ ELGI L+  P L+CDNLGATYLS  PI ++RT
Sbjct: 1319 VSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLGATYLSSKPIFNART 1378

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLR 27
            KH++VD+HFVRDR+ +K L +  +S+ DQ+ D FTK L+I R    R
Sbjct: 1379 KHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKALTIGRLNEFR 1425


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  440 bits (1132), Expect(2) = e-152
 Identities = 212/395 (53%), Positives = 280/395 (70%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP S  +      W+ AM  E+ AL+   TW LVPP   +N++  +W+ K K  +DGS++
Sbjct: 306  EPQSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLD 365

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKG+ Q  G+DY++TFS V+K  TIR+VLS+A+S GWS++QLDV+NAFLHG L
Sbjct: 366  RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVL 425

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E V+M QPPG+     PNYVCKL++ALYGLKQAPRAWY+RLS++L ELGFV SK+DTSL
Sbjct: 426  EEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSL 485

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F Y+   V ++ L+YVDDI+   S       L+  LS DF LK LGDLHYFLG+E  +  
Sbjct: 486  FFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVK 545

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQ 632
             GL +SQ KY  DLL++  M +CK V  P+S S KLS  + T    +D T YRSVVG+LQ
Sbjct: 546  DGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQ 605

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TRPD++FS+N+VCQ++HAP  +HW +VKRILRY+K T+D GL    + +  +  ++
Sbjct: 606  YLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFS 665

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW G PDDR+STGG+ +F G NLV WS++KQ T
Sbjct: 666  DADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQAT 700



 Score =  128 bits (322), Expect(2) = e-152
 Identities = 55/112 (49%), Positives = 85/112 (75%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKALA+AT E++W+Q+L+ ELG+       L+CDNLGA YLS NPI H+RT
Sbjct: 701  VSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHART 760

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VD+HFVR+R+  K L+++++S+KDQ+ D FTK + + +    +++L +
Sbjct: 761  KHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 812


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  445 bits (1145), Expect(2) = e-152
 Identities = 214/395 (54%), Positives = 282/395 (71%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP +  +    S WRLAM  E+ A MS  TW LVPP   +NI+  +W+ K K  +DGSI+
Sbjct: 425  EPENLREAMANSNWRLAMEQEYSAFMSNKTWHLVPPTQGKNIIDCKWMYKIKRKADGSID 484

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKG+ Q  G+DY++TFSLV+K  TIRL+LSIA+S GWS++QLDVQNAFLHG+L
Sbjct: 485  RYKARLVAKGFKQRYGIDYEDTFSLVVKAATIRLILSIAVSKGWSLRQLDVQNAFLHGYL 544

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E V+M QPPGF +   PNY+CKL++ALYGLKQAPRAWY+RLS++L ELGF+ SK+DTSL
Sbjct: 545  EEEVYMRQPPGFENKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKADTSL 604

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F Y      ++ LVYVDDI+   S+ +++  L+  L  DF LK LGDLHYFLG+E ++ S
Sbjct: 605  FFYNKGGCTIFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVS 664

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQ 632
             GL +SQ  Y  D+LK+  M  CK    P+S + KLS  D       D + YRS+VG+LQ
Sbjct: 665  QGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQ 724

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TR DL+F VN+VCQ++H+P   HW +VKRILRY+K T++FGL    S +  + A++
Sbjct: 725  YLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLISAFS 784

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW GC DDR+STGG+ +F G NL+ WS++KQ T
Sbjct: 785  DADWAGCSDDRRSTGGFAVFLGPNLISWSARKQAT 819



 Score =  121 bits (303), Expect(2) = e-152
 Identities = 55/112 (49%), Positives = 79/112 (70%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKALA+AT E+ W++ ++ EL I   +   L+CDNLGATYLS NP+ H+RT
Sbjct: 820  VSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHART 879

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH+++DYHFVR+++  K L + F+S+ DQ+ D FTK L     A  R +L +
Sbjct: 880  KHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSLPAPSLAQYRHNLNL 931


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  436 bits (1120), Expect(2) = e-152
 Identities = 210/392 (53%), Positives = 278/392 (70%), Gaps = 2/392 (0%)
 Frame = -2

Query: 1516 SFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE*RK 1337
            S  +      W+ AM  E+ AL+   TW LVPP   +N++  +W+ K K  +DGS++  K
Sbjct: 887  SLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYK 946

Query: 1336 ARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHLDEH 1157
            ARLVAKG+ Q  G+DY++TFS V+K  TIR+VLS+A+S GWS++QLDV+NAFLHG L+E 
Sbjct: 947  ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEE 1006

Query: 1156 VFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSLFIY 977
            V+M QPPG+     PNYVCKL++ALYGLKQAPRAWY+RLS++L ELGFV SK+DTSLF Y
Sbjct: 1007 VYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFY 1066

Query: 976  RHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDSFGL 797
            +   V ++ L+YVDDI+   S       L+  LS DF LK LGDLHYFLG+E  +   GL
Sbjct: 1067 KKGQVSIFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGL 1126

Query: 796  KISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQYLL 623
             +SQ KY  DLL++  M +CK V  P+S S KLS  + T    +D T YRSVVG+LQYL 
Sbjct: 1127 MLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLT 1186

Query: 622  FTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYTDAD 443
             TRPD++FS+N+VCQ++HAP  +HW +VKRILRY+K T+D GL    + +  +  ++DAD
Sbjct: 1187 LTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDAD 1246

Query: 442  WVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            W G PDDR+STGG+ +F G NLV WS++KQ T
Sbjct: 1247 WAGSPDDRRSTGGFAVFLGPNLVSWSARKQAT 1278



 Score =  130 bits (327), Expect(2) = e-152
 Identities = 56/112 (50%), Positives = 86/112 (76%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSSIE EYKALA+AT E++W+Q+L+ ELG+       L+CDNLGA YLS NPI H+RT
Sbjct: 1279 VSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHART 1338

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VD+HFVR+R+  K L+++++S+KDQ+ D FTK + + +    +++L +
Sbjct: 1339 KHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 1390


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  431 bits (1109), Expect(2) = e-150
 Identities = 209/395 (52%), Positives = 279/395 (70%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EPT+  +  K   W+LAM  E+DAL+   TW LVPP   +NI+  +W+ K K  +DG+++
Sbjct: 944  EPTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLD 1003

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKG+ Q  G+DY++TFS V+K  TIR++LS+A+S GWS++QLDVQNAFLHG+L
Sbjct: 1004 RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYL 1063

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E V+M QPPGF     P++VCKL++ALYGLKQAPRAW++RLS +L++LGF  SK DTSL
Sbjct: 1064 EEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSL 1123

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F      + ++ LVYVDDI+   S+ K    L+  L  +F LK LG+LHYFLG+E  +  
Sbjct: 1124 FFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQ 1183

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQ 632
             G+ ++Q KY  DLLKK  M+ CK    P+S S KLS  + +    ED + YRSVVG+LQ
Sbjct: 1184 NGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQ 1243

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TRPD+AFSVN+VCQ++HAP   HW +VKRILRYLKQ    GL +  S +  +  ++
Sbjct: 1244 YLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVSGFS 1303

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW GC DDR+STGG+ IF G NLV W+++KQ T
Sbjct: 1304 DADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQAT 1338



 Score =  130 bits (327), Expect(2) = e-150
 Identities = 57/113 (50%), Positives = 84/113 (74%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKA+A+AT E++W+Q+L+ EL I       ++CDNLGA YLS NP+ H+RT
Sbjct: 1339 VSRSSTESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHART 1398

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTVL 9
            KH++VDYHFVR+R+  K L++ F+S+ DQ+ D FTKPLS+      +S+L ++
Sbjct: 1399 KHIEVDYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLSVRLLENFKSNLNLV 1451


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  437 bits (1123), Expect(2) = e-150
 Identities = 209/395 (52%), Positives = 276/395 (69%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP +  +      W+ AM  E+DAL+  +TW LVP    QN++  +W+ K K  +DG+++
Sbjct: 927  EPQNDKEALGDKNWKAAMEAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLD 986

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKG+ Q  G+DY++TFS V+K  TIR++LSIA+S GWS++QLDVQNAFLHG L
Sbjct: 987  RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFL 1046

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E V+M QPPGF     PNYVCKL++ALYGLKQAPRAWY+RLS +L+ELGF  SK+DTSL
Sbjct: 1047 EEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSL 1106

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F      ++++ LVYVDDI+   S  K    L+  L+ +F LK LGDLHYFLG+E  +  
Sbjct: 1107 FFLNKGGIIMFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVP 1166

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQ 632
             G+ ++Q KY  DLLK+ NM  CK V  P+S S KL+ ++ +     D T YRS+VG+LQ
Sbjct: 1167 NGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQ 1226

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TRPD+A+SVN+VCQ++HAP   HW +VKRILRYL Q    GL +  S +  +  Y+
Sbjct: 1227 YLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSASTLVHGYS 1286

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW G  DDRKSTGG+ +F G NLV WS++KQ T
Sbjct: 1287 DADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPT 1321



 Score =  125 bits (313), Expect(2) = e-150
 Identities = 56/112 (50%), Positives = 80/112 (71%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKA+A+ T EL+W+Q+L+ ELGI       ++CDNLGA YLS NP+ H+RT
Sbjct: 1322 VSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHART 1381

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VDYHFVR+R+  K L++ F+ S DQ+ D FTK LS+      + +L +
Sbjct: 1382 KHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSVRLLEHFKHNLNL 1433


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  437 bits (1123), Expect(2) = e-150
 Identities = 214/402 (53%), Positives = 278/402 (69%), Gaps = 2/402 (0%)
 Frame = -2

Query: 1546 TTSAVPEEPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKH 1367
            T   V  EP +     K + W+ AM  EF AL +  TW LVPP   +N++  +W+ K K 
Sbjct: 731  TFLTVTGEPENLDDALKDNNWKKAMDAEFMALQNNKTWHLVPPQKGRNVIDCKWVYKIKR 790

Query: 1366 LSDGSIE*RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQN 1187
              DGS++  KARLVAKG+ Q  G+DY++TFS V+K  TIR++LSIA+S GW ++QLDVQN
Sbjct: 791  KQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQN 850

Query: 1186 AFLHGHLDEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVI 1007
            AFLHG L+E V+M QPPG+     P YVCKL++ALYGLKQAPRAWY+RLS +L ++GF  
Sbjct: 851  AFLHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQG 910

Query: 1006 SKSDTSLFIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLG 827
            SK+DTSLF Y    ++++ L+YVDDI+ T S  + +P L+  L  +F LK LGDLHYFLG
Sbjct: 911  SKADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLG 970

Query: 826  LECRRDSFGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLS--AFDSTSFEDPTLYR 653
            +E  + S G+ ++Q KY+ DLL++ NM  CK V  P+S S KLS    D     D T YR
Sbjct: 971  IEVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYR 1030

Query: 652  SVVGSLQYLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTT 473
            SVVG+LQYL  TRPD+AF VN+VCQ++HAP   HW +VKRILRYLKQ    GL L  S +
Sbjct: 1031 SVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRS 1090

Query: 472  PSLVAYTDADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
              + AY+DADW G  DDR+STGG+ +F G NLV WS++KQ T
Sbjct: 1091 MLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWSARKQAT 1132



 Score =  124 bits (312), Expect(2) = e-150
 Identities = 55/112 (49%), Positives = 82/112 (73%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKALA+AT E++W+Q+L+ EL +   +   L+CDNLGA YLS NP+ H+RT
Sbjct: 1133 VSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMAKLWCDNLGAKYLSANPVFHART 1192

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VDYHFVR+R+  K L++ F+ + DQ+ D FTK LS+ +    + +L +
Sbjct: 1193 KHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKALSVRQLENFKYNLNL 1244


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  437 bits (1124), Expect(2) = e-150
 Identities = 211/391 (53%), Positives = 278/391 (71%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EPT+F+Q  K S W LAM  EF AL   NTW LVPP S+ NI+  +W+ K K+  DG+++
Sbjct: 711  EPTTFTQAVKDSNWVLAMEKEFSALQRNNTWHLVPPPSNGNIIGCKWVYKLKYKPDGTVD 770

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVA+G++Q  GL+Y ETFS V+K +TIR++L++A+S  WS+ QLDVQNAFLHG L
Sbjct: 771  RYKARLVAQGFTQTLGLBYFETFSPVVKASTIRIILAVALSFNWSVHQLDVQNAFLHGDL 830

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +EHVFM QPPGF++ ++P++VCKLN+ALYGLKQAPRAWY +LS+ LL  GF  S++D+S+
Sbjct: 831  EEHVFMQQPPGFINSQYPSHVCKLNKALYGLKQAPRAWYNKLSTSLLGWGFQASRADSSM 890

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            FI+     VL  L+YVDDI+ TGS++  +   ++ L++ F L+ LG ++YFLG+E  R  
Sbjct: 891  FIHHSTHDVLILLIYVDDILVTGSSSAQVSSFITRLNSSFALRDLGYVNYFLGIEVVRSG 950

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSFEDPTLYRSVVGSLQYL 626
                +SQ KY  DLL +T ML  K    P      LS  D   F D TLYRS VG+LQYL
Sbjct: 951  TMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLGQTLSHLDGEPFSDATLYRSTVGALQYL 1010

Query: 625  LFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYTDA 446
              TRPD++F+VN+ CQ+M  P  +HW +VKRILRYLK T+ +G+ +Q ST+  +  YTDA
Sbjct: 1011 TLTRPDISFAVNKACQFMATPTTTHWLAVKRILRYLKGTLSYGIQMQQSTSLDIHGYTDA 1070

Query: 445  DWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQ 353
            DW  CPDDR+STGGY IF G NLV WSS KQ
Sbjct: 1071 DWASCPDDRRSTGGYGIFLGPNLVSWSSNKQ 1101



 Score =  123 bits (309), Expect(2) = e-150
 Identities = 54/115 (46%), Positives = 84/115 (73%)
 Frame = -1

Query: 353  KYIARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHS 174
            K ++RSS E EY+ALA AT E++W+Q ++ EL +  S+PP L+CDN  A +L+ NP+ H+
Sbjct: 1102 KVVSRSSAESEYRALASATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHA 1161

Query: 173  RTKHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTVL 9
            RTKH+++D HF+RD +  K L + +L S +Q+ DIFTK +S S+F + R+ L+V+
Sbjct: 1162 RTKHIEMDLHFIRDHVLRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSVV 1216


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  431 bits (1109), Expect(2) = e-150
 Identities = 213/395 (53%), Positives = 276/395 (69%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP +  +      W+ AM  E+ ALM   TW LVP    QNI+  +W+ K K  +DGS++
Sbjct: 923  EPQTLHEALGDKNWKEAMDSEYQALMKNKTWHLVPSKKGQNIIDCKWVYKVKRKADGSLD 982

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KAR+VAKG+ Q  G+DY++TF+ V+K  TIR +LSIAIS GW+++QLDVQNAFLHG L
Sbjct: 983  RYKARVVAKGFKQRYGIDYEDTFNPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVL 1042

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E VFM QPPG+   +   YVCKL++ALYGLKQAPRAWY+RLS++L ELGF  SKSDTSL
Sbjct: 1043 EEDVFMRQPPGYEQKD--GYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSL 1100

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F Y    V ++ LVYVDDI+   S+      L+  L+ +F LK LG LHYFLG+E +  +
Sbjct: 1101 FFYSKGDVAMFMLVYVDDIIVASSSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVN 1160

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQ 632
             G+ ++Q KY +D+LK+ NM  CK V  P+S S KLSA +   F  ED T YRS+VG+LQ
Sbjct: 1161 NGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQ 1220

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TRPDL+FSVN+VCQY+HAP   HW + KRILRYLK T+  GL +  S +  + A++
Sbjct: 1221 YLTLTRPDLSFSVNKVCQYLHAPTTKHWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFS 1280

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW GC DDR STGG+ +F G NLV WS++KQ T
Sbjct: 1281 DADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQAT 1315



 Score =  129 bits (323), Expect(2) = e-150
 Identities = 56/112 (50%), Positives = 84/112 (75%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKALA+ T E++W+Q+L+ ELGI       ++CDN+GA Y++ NP+ H+RT
Sbjct: 1316 VSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKYMTANPVFHART 1375

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VDYHFVR+R+  K LQV ++S+KDQ+ D FTK LS+ +    R++L +
Sbjct: 1376 KHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNL 1427


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  426 bits (1096), Expect(2) = e-149
 Identities = 210/404 (51%), Positives = 280/404 (69%), Gaps = 11/404 (2%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP+S  +    + W+ AM  EF AL+   TW LVPP   +NI+  +W+ K K  +DG+I+
Sbjct: 383  EPSSLQEALSSANWKQAMDKEFSALLHNKTWHLVPPVKGKNIIDSKWVYKIKKKADGTID 442

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKG+ Q  G+DY++TFS V+K  TIRLVLSIA+S GWS++QLDVQNAFLHG+L
Sbjct: 443  RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRLVLSIAMSQGWSLRQLDVQNAFLHGYL 502

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            DE V+M QPPGF     P+++CKL++ALYGLKQAPRAWY+RLS +L ELGF  SK+DTSL
Sbjct: 503  DEEVYMRQPPGFEDARQPHFLCKLDKALYGLKQAPRAWYSRLSKKLQELGFSSSKADTSL 562

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F Y      ++ LVYVDDI+   S++  +  L+  L  DF LK LGDLHYFLG+E +R  
Sbjct: 563  FFYNKGHHKMFVLVYVDDIIVASSSSPAVNALLKDLEKDFALKDLGDLHYFLGIEVKRTP 622

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSA--FDSTSFEDPTLYRSVVGSLQ 632
              L +SQ +Y  +LL++ NM  CK V  P+S + KLS    D     D T YRS+VG+LQ
Sbjct: 623  QTLLLSQERYTTELLERVNMTSCKPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIVGALQ 682

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TRPD+++SVN+VCQ++  P  +HW +VKRILRYLK T+D GL +  S++  + A++
Sbjct: 683  YLTLTRPDISYSVNKVCQFLQTPTTAHWSAVKRILRYLKGTLDLGLKIVKSSSNLVSAFS 742

Query: 451  DADWVGCPD---------DRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW G  D         DR+STGG+ +F+G NL+ WS++KQ T
Sbjct: 743  DADWAGSVDDRRSTGGFADRRSTGGFAVFFGDNLISWSARKQAT 786



 Score =  132 bits (333), Expect(2) = e-149
 Identities = 57/113 (50%), Positives = 85/113 (75%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKALA+A  E++W++ L+TELGI       L+CDNLGATY++ NP+ H+RT
Sbjct: 787  VSRSSTEAEYKALANAAAEIIWVRKLLTELGILHPNAARLWCDNLGATYMTANPVFHART 846

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTVL 9
            KH++VDYHFVR+++  K L + F+SS+DQ+ D FTKP+S+ +    R +L ++
Sbjct: 847  KHIEVDYHFVREQVAQKLLDIHFVSSQDQVADGFTKPISLQQLIGFRHNLNLV 899


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  431 bits (1108), Expect(2) = e-149
 Identities = 213/395 (53%), Positives = 276/395 (69%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP   ++      W+ AM  E+ ALM   TW LVPP   +N++  +W+ K K  +DGS++
Sbjct: 804  EPYDLNEALGDVNWKDAMDIEYSALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLD 863

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKGY Q  G+DY +TFS V+K  TIR++LSIA+S GWS+ QLDVQNAFLHG L
Sbjct: 864  RYKARLVAKGYKQQYGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVL 923

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E V+M QPPG+      NYVCKL++ALYGLKQAPRAWY+RLS++LL LGF  SK+DTSL
Sbjct: 924  EEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSL 983

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F Y   SV ++ LVYVDDI+   S  K    L+S L+ +F LK LGDL+YFLG+E  +  
Sbjct: 984  FFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVR 1043

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQ 632
             G+ ++Q KY  DLLKK  M  CK +  P+S S KLS  + +    +D T YRS+VG+LQ
Sbjct: 1044 DGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQ 1103

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TRPD+AFSVN+VCQ++HAP   HW +VKRILRY+KQ  + GL +  S +  + A++
Sbjct: 1104 YLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLVSAFS 1163

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW G  DDRKSTGG+ +F G NLV WS++KQ T
Sbjct: 1164 DADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPT 1198



 Score =  127 bits (320), Expect(2) = e-149
 Identities = 59/112 (52%), Positives = 80/112 (71%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKALA+AT EL+W+Q L+TE+ I       L+CDNLGA YLS NPI H+RT
Sbjct: 1199 VSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHART 1258

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VDYHFVRDR+  K L + ++ + DQ+ D FTKPLS+      + +L +
Sbjct: 1259 KHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLSVRLLENFKVNLNL 1310


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  432 bits (1111), Expect(2) = e-149
 Identities = 212/402 (52%), Positives = 278/402 (69%), Gaps = 2/402 (0%)
 Frame = -2

Query: 1546 TTSAVPEEPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKH 1367
            T   V  EP + +   + + W+ AM  E++ALM+  TW LVPP   +N++  +W+ K K 
Sbjct: 931  TFLTVTGEPKNLTDALQNTNWKKAMDIEYEALMNNKTWHLVPPKQGRNVIDCKWVYKIKR 990

Query: 1366 LSDGSIE*RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQN 1187
              DGS++  KARLVAKG+ Q  G+DY++TFS V+K  TIR+VLSIA+S GW ++QLDVQN
Sbjct: 991  KQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQN 1050

Query: 1186 AFLHGHLDEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVI 1007
            AFLHG L+E V+M QPPG+    FP YVCKL++ALYGLKQAPRAWY+RLS +L +LGF  
Sbjct: 1051 AFLHGFLEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQG 1110

Query: 1006 SKSDTSLFIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLG 827
            SK DTSLF Y    ++++ L+YVDDI+ T S  + +  L+  L  +F LK LGDLHYFLG
Sbjct: 1111 SKGDTSLFFYNKGGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLG 1170

Query: 826  LECRRDSFGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSFE--DPTLYR 653
            +E  + +  + ++Q KY  DLL++ NM  CK V  P+S S KLSA +       D T YR
Sbjct: 1171 IEVNKVTDEIILTQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYR 1230

Query: 652  SVVGSLQYLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTT 473
            SVVG+LQYL  TRPD+AF VN+VCQ++HAP   HW +VKRILRYLKQ    GL L  S +
Sbjct: 1231 SVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTKLGLKLCKSKS 1290

Query: 472  PSLVAYTDADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
              + AY+DADW G  DDR+STGG+ +F G NLV W ++KQ T
Sbjct: 1291 MLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQAT 1332



 Score =  124 bits (311), Expect(2) = e-149
 Identities = 55/112 (49%), Positives = 81/112 (72%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKALA+AT E++W+Q+L+TEL +       L+CDNLGA YLS NP+ H+RT
Sbjct: 1333 VSRSSTESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPVFHART 1392

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VDYHFVR+R+  K L++ F+ + DQ+ D FTK L + +    + +L +
Sbjct: 1393 KHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTKALPVRQLENFKHNLNL 1444


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  424 bits (1091), Expect(2) = e-149
 Identities = 211/395 (53%), Positives = 273/395 (69%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP +  +      W+ AM  E+ ALM   TW  VP    QNI+  +W+ K K  +DGS++
Sbjct: 523  EPQTLHEALGDKNWKEAMDSEYQALMKNKTWHRVPSKKGQNIIDCKWVYKVKRKADGSLD 582

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKG+ Q  G+DY++TF  V+K  TIR +LSIAIS GW+++QLDVQNAFLHG L
Sbjct: 583  RYKARLVAKGFKQRYGIDYEDTFRPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVL 642

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E VFM QPPG+   +   YVCKL++ALYGLKQAPRAWY+RLS++L ELGF  SKSDTSL
Sbjct: 643  EEDVFMRQPPGYEQKD--GYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSL 700

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F Y    V ++ LVYVDDI+   S+      L+  L+ +F LK LG LHYFLG+E +  +
Sbjct: 701  FFYSKGDVTIFMLVYVDDIIVASSSIVATNALLKNLNQEFALKDLGRLHYFLGIEVKEVN 760

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQ 632
             G+ ++Q KY +D+LK+ NM  CK V  P+S S KLSA +      ED T YRS+VG+LQ
Sbjct: 761  DGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPLGPEDSTRYRSLVGALQ 820

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TRPDL+FSVN+VCQY+HA    HW + KRILRYLK T+  GL +  S +  + A++
Sbjct: 821  YLTLTRPDLSFSVNKVCQYLHAATTKHWVAAKRILRYLKHTVKLGLKISKSNSLLVSAFS 880

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW GC DDR+STGG+ +F G NLV WS++KQ T
Sbjct: 881  DADWAGCLDDRRSTGGFAVFIGPNLVSWSARKQAT 915



 Score =  131 bits (330), Expect(2) = e-149
 Identities = 57/112 (50%), Positives = 86/112 (76%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKALA+AT E++W+Q+L+ ELGI +     ++CDN+GA Y++ NP+ H+RT
Sbjct: 916  VSRSSTEAEYKALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGAKYMTANPVFHART 975

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VDYHFVR+R+  K LQV ++S+KDQ+ D FTK LS+ +    R++L +
Sbjct: 976  KHIEVDYHFVRERVARKLLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNL 1027


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  431 bits (1109), Expect(2) = e-148
 Identities = 210/395 (53%), Positives = 277/395 (70%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP +  +      WR AM  E++AL+  +TW LVP    QNI+  +W+ K K  +DG+++
Sbjct: 936  EPQNDKEALGDKNWRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLD 995

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKG+ Q  G+DY++TFS V+K  TIR++LSIA+S GWS++QLDVQNAFLHG L
Sbjct: 996  RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFL 1055

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E V+M QPPGF     P+YVCKL++ALYGLKQAPRAWY+RLS +L+ELGF  SK+DTSL
Sbjct: 1056 EEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSL 1115

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F      ++++ LVYVDDI+   S  K    L+  L+ +F LK LGDLHYFLG+E  + S
Sbjct: 1116 FFLNKGGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVS 1175

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQ 632
             G+ ++Q KY  DLLK+ NM  CK V  P+S S KL+ ++ +     D   YRS+VG+LQ
Sbjct: 1176 NGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQ 1235

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TRPD+A+SVN+VCQ++HAP  SHW +VKRILRYL Q    GL +  S +  +  Y+
Sbjct: 1236 YLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLVHGYS 1295

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW G  DDRKSTGG+ +F G NLV WS++KQ T
Sbjct: 1296 DADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPT 1330



 Score =  124 bits (311), Expect(2) = e-148
 Identities = 56/112 (50%), Positives = 79/112 (70%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKA+A+ T EL+W+Q+L+ ELGI       ++CDNLGA YLS NP+ H+RT
Sbjct: 1331 VSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHART 1390

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VDYHFVR+R+  K L++ F+ S DQ+ D FTK LS       + +L +
Sbjct: 1391 KHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLLENFKHNLNL 1442


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  428 bits (1100), Expect(2) = e-148
 Identities = 207/395 (52%), Positives = 275/395 (69%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP +     + + W+ AM  E+ AL+  NTW LVPP   +N++  +W+ K K   DGS++
Sbjct: 922  EPENLQDALQNNNWKCAMDAEYMALIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLD 981

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKG+ Q  G+DY++TFS V+K  TIR++LSIA+S GW ++QLDVQNAFLHG L
Sbjct: 982  RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVL 1041

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E V+M QPPG+ +   P+YVCKL++ALYGLKQAPRAWY+RLS +L +LGF  SK+DTSL
Sbjct: 1042 EEEVYMKQPPGYENPSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSL 1101

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F Y   S+ ++ L+YVDDI+   S  + +  L+  L  +F LK LGDLHYFLG+E  +  
Sbjct: 1102 FFYNKGSLTIFLLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIP 1161

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSF--EDPTLYRSVVGSLQ 632
             G+ +SQ KY  DLLK+ NM  CK V  P+S S KL A   T     D T YRS+VG+LQ
Sbjct: 1162 GGILMSQEKYASDLLKRVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQ 1221

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TR D+AFSVN+VCQ++H P   HW +VKRILRY+KQ    GL +  S++  +  Y+
Sbjct: 1222 YLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMIVSGYS 1281

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW GC DDR+STGG+ ++ G NLV W++KKQ T
Sbjct: 1282 DADWAGCLDDRRSTGGFAVYLGDNLVSWNAKKQAT 1316



 Score =  127 bits (319), Expect(2) = e-148
 Identities = 56/112 (50%), Positives = 81/112 (72%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYKALA+AT E++W+Q+L+ EL I       L+CDN+GA YLS NP+ H+RT
Sbjct: 1317 VSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKYLSFNPVFHART 1376

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VDYHFVR+R+  K LQV ++S+ DQ+ D FTK L + +    + +L +
Sbjct: 1377 KHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKALPVKQLENFKYNLNL 1428


>ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846463 [Brachypodium
            distachyon]
          Length = 989

 Score =  421 bits (1082), Expect(2) = e-148
 Identities = 209/382 (54%), Positives = 266/382 (69%), Gaps = 2/382 (0%)
 Frame = -2

Query: 1486 WRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE*RKARLVAKGYSQ 1307
            W  AM  +FDAL    TW+LVP     NIV  RWI KTK   DG ++  KARLVA+G++Q
Sbjct: 490  WHAAMEAKFDALQKNQTWTLVPRPPGTNIVGSRWIFKTKFCPDGLVDKYKARLVARGFTQ 549

Query: 1306 LEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHLDEHVFMTQPPGFV 1127
              G+DY +TFS V+KP T+RLVLS+A S GW ++Q+DV N+FLHG L E V+M QPPGF 
Sbjct: 550  QYGIDYHDTFSPVVKPVTVRLVLSLAASRGWCLRQVDVSNSFLHGFLTEEVYMQQPPGFE 609

Query: 1126 HLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSLFIYRHQSVVLYFL 947
                P +VCKL RALYGLKQ+PRAWYA LS +L +LGFV SK+DTSLFI+ HQ V++Y L
Sbjct: 610  DPRCPQHVCKLQRALYGLKQSPRAWYACLSDKLHQLGFVASKADTSLFIFDHQGVMVYML 669

Query: 946  VYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDSFGLKISQRKYIID 767
            VYVDDIV  GS+   + +LV+ LS  FP+K LG L YFLG+E      G+ + Q KY +D
Sbjct: 670  VYVDDIVLAGSSLSAVDQLVATLSGSFPIKDLGRLEYFLGIEAAYSFEGMVLMQHKYALD 729

Query: 766  LLKKTNMLQCKLVGNPMSPSTKLS--AFDSTSFEDPTLYRSVVGSLQYLLFTRPDLAFSV 593
            LL + NM QC+ V  PMS S KL+    +    ED   YRS++G LQYL  TRPDL+F+V
Sbjct: 730  LLHRANMEQCRPVTTPMSTSDKLTRDLGEPLGLEDSFKYRSLIGGLQYLTLTRPDLSFAV 789

Query: 592  NRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYTDADWVGCPDDRKS 413
            N+VCQY+  P  +H++ VKRILR++K  +  GL  Q S++  L  +TDADW GC DDR+S
Sbjct: 790  NKVCQYLSQPTTAHYEVVKRILRFVKGIVSTGLRFQRSSSTRLGIFTDADWAGCSDDRRS 849

Query: 412  TGGYCIFYGKNLVFWSSKKQNT 347
            TGG+ +F G NLV WSS+KQ T
Sbjct: 850  TGGFAVFLGPNLVSWSSRKQPT 871



 Score =  133 bits (335), Expect(2) = e-148
 Identities = 57/108 (52%), Positives = 84/108 (77%), Gaps = 3/108 (2%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            ++RSS E EYK LA+ T E +W+QS++ ELG++ S PP L+CDN+GATYLS NP+ H+RT
Sbjct: 872  VSRSSTEAEYKVLANGTAEAIWIQSVLKELGVYQSRPPVLWCDNIGATYLSANPVFHART 931

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKP---LSISRFAT 33
            KH+++D+HFVR+++   AL V  +S+ DQ+ D+FTKP   L++ RF+T
Sbjct: 932  KHIEIDFHFVREKVALGALDVRSISTADQLADVFTKPATQLTLHRFST 979


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  427 bits (1099), Expect(2) = e-148
 Identities = 207/395 (52%), Positives = 272/395 (68%), Gaps = 2/395 (0%)
 Frame = -2

Query: 1525 EPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLSDGSIE 1346
            EP         + W+ AM  +F AL+   TW LVPP   +NI+ Y+W+ K K   DGS++
Sbjct: 747  EPRDLHDALHDTNWKHAMDAKFTALLHNKTWHLVPPQKGRNIIDYKWVYKIKRKQDGSLD 806

Query: 1345 *RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAFLHGHL 1166
              KARLVAKG+ Q  G+DY++TFS V+K  TIR++LSIA+S GW+++QLDVQNAFLHG L
Sbjct: 807  RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGIL 866

Query: 1165 DEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISKSDTSL 986
            +E V+M QPPG+     P+YVCKL++ALYGLKQAPRAWYA+LS +L  LGF  SK+DTSL
Sbjct: 867  EEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSL 926

Query: 985  FIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLECRRDS 806
            F Y    ++++ LVYVDDI+   S    +P L+  L  DF LK LGDLHYFLG+E  + S
Sbjct: 927  FFYNKGGLIIFVLVYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDLHYFLGIEVNKAS 986

Query: 805  FGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAF--DSTSFEDPTLYRSVVGSLQ 632
             G+ ++Q KY+ DLL++  M  CK V  P+S S KL+    D     D + YRSVVG+LQ
Sbjct: 987  SGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQ 1046

Query: 631  YLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLVAYT 452
            YL  TRPD+ F VN+VCQ++HAP + HW ++KRILRYLKQ    GL +  S +  +  Y+
Sbjct: 1047 YLTLTRPDIYFPVNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLKISKSKSMLVSGYS 1106

Query: 451  DADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            DADW G  DDR+STGG+ +F G NLV W++KKQ T
Sbjct: 1107 DADWAGNIDDRRSTGGFAVFLGDNLVSWNAKKQAT 1141



 Score =  125 bits (313), Expect(2) = e-148
 Identities = 58/112 (51%), Positives = 80/112 (71%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            + RSS E EYKALA+AT E++W+Q+L+ EL +       L+CDNLGA YLS NP+ H+RT
Sbjct: 1142 VPRSSTESEYKALANATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSSNPVFHART 1201

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KH++VDYHFVR+R+Q K L+V F+ + DQ+ D FTK LS  +    + +L V
Sbjct: 1202 KHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFTKALSARQLENFKYNLNV 1253


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  443 bits (1139), Expect(2) = e-147
 Identities = 229/398 (57%), Positives = 278/398 (69%)
 Frame = -2

Query: 1540 SAVPEEPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQNIVRYRWICKTKHLS 1361
            +A+P  P++F Q SK S W  AM  EF AL ST TW LVP  S  NIV  +W+ K KH  
Sbjct: 1143 TALPPTPSTFLQASKSSHWMEAMQFEFQALQSTGTWELVPNHSTYNIVGCKWVFKVKHKP 1202

Query: 1360 DGSIE*RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAF 1181
            DG+IE  KARLVAKG+ Q EGLD+ ETFS V KPTTIR++LSIA+S  W I QLDV NAF
Sbjct: 1203 DGTIERYKARLVAKGFHQQEGLDFSETFSPVAKPTTIRILLSIAVSYYWFIHQLDVSNAF 1262

Query: 1180 LHGHLDEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISK 1001
            LHGHL E V+M QPPGFV    P++VCKL ++LYGLKQAPRAWY    + +L LGF  S 
Sbjct: 1263 LHGHLKEDVYMVQPPGFVDPSKPHHVCKLRKSLYGLKQAPRAWYEAFYTAILSLGFSSSH 1322

Query: 1000 SDTSLFIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLE 821
            SDTSLFI R  S+  + LVYVDDI+ TGS+      ++S L   FP+K LGD++YFLG+E
Sbjct: 1323 SDTSLFIKRDTSIT-FILVYVDDIIITGSSVTECQSIISQLQTMFPVKDLGDINYFLGIE 1381

Query: 820  CRRDSFGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSFEDPTLYRSVVG 641
              +   GL + Q KY +DLLKKT+ML  K    P+S S KL     T   DPT YRS VG
Sbjct: 1382 VHKSDQGLLLHQAKYALDLLKKTDMLGAKPCATPVSTS-KLD-HSGTLLSDPTSYRSTVG 1439

Query: 640  SLQYLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLV 461
            +LQYL +TRPDLAF+VN+VCQYMH+P   H Q+VKRILRYLK T+D GL+     +  L 
Sbjct: 1440 ALQYLTWTRPDLAFAVNQVCQYMHSPQTIHLQAVKRILRYLKGTVDLGLWFTKG-SQCLT 1498

Query: 460  AYTDADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQNT 347
            A++DADW GCP DR+ST GYC+F G NL+ WS+KKQ T
Sbjct: 1499 AWSDADWAGCPVDRRSTSGYCVFLGSNLISWSAKKQAT 1536



 Score =  107 bits (267), Expect(2) = e-147
 Identities = 47/112 (41%), Positives = 74/112 (66%)
 Frame = -1

Query: 347  IARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPIMHSRT 168
            +ARSS E EY++LA+   E+ W+  ++ ++   L   P ++CDN     L+ NP+ H+RT
Sbjct: 1537 VARSSTEAEYRSLANTAAEITWVCKILHDISFPLLKTPVIYCDNKSVIALAFNPVFHART 1596

Query: 167  KHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
            KHV++DYH++R+++    + V  ++S  QI DIFTKPL+  RFA L S L+V
Sbjct: 1597 KHVEIDYHYIREKVLLGHIGVQHVASLLQIADIFTKPLAADRFAALTSKLSV 1648


>dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|dbj|BAM42648.1|
            polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  421 bits (1082), Expect(2) = e-146
 Identities = 213/402 (52%), Positives = 271/402 (67%), Gaps = 1/402 (0%)
 Frame = -2

Query: 1555 AYITTSAVPEEPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPASHQ-NIVRYRWIC 1379
            +Y T+ A   EP +  Q  K   WR AM  E +A +  +TW LVPP      IV  RWI 
Sbjct: 947  SYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIF 1006

Query: 1378 KTKHLSDGSIE*RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQL 1199
              K  SDGS+   KARLVAKGY+Q  GLDY ETFS VIK T+IR+VL +A+   W I+QL
Sbjct: 1007 TKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1066

Query: 1198 DVQNAFLHGHLDEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLEL 1019
            DV NAFL G L + V+M+QPPGFV  + P+YVC+L +A+YGLKQAPRAWY  L + LL +
Sbjct: 1067 DVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTV 1126

Query: 1018 GFVISKSDTSLFIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLH 839
            GFV S SDTSLF+ +    ++Y LVYVDDI+ TG++T ++   +  LS  F +K+  DLH
Sbjct: 1127 GFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLH 1186

Query: 838  YFLGLECRRDSFGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSFEDPTL 659
            YFLG+E +R   GL +SQR+Y +DLL +TNML  K V  PM+ S KL+    T   DPT 
Sbjct: 1187 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE 1246

Query: 658  YRSVVGSLQYLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPS 479
            YR +VGSLQYL FTRPDL+++VNR+ QYMH P   HW ++KR+LRYL  T D G+FL+  
Sbjct: 1247 YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKG 1306

Query: 478  TTPSLVAYTDADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQ 353
             T SL AY+DADW G  DD  ST GY ++ G + + WSSKKQ
Sbjct: 1307 NTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQ 1348



 Score =  127 bits (320), Expect(2) = e-146
 Identities = 57/118 (48%), Positives = 85/118 (72%)
 Frame = -1

Query: 362  QEAKYIARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPI 183
            ++ K + RSS E EY+++A+ + EL W+ SL+TELGI LS PP ++CDN+GATYL  NP+
Sbjct: 1346 KKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPV 1405

Query: 182  MHSRTKHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTVL 9
             HSR KH+ +DYHF+R+++Q+ AL+V  +S+ DQ+ D  TKPLS+  F      + V+
Sbjct: 1406 FHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSLVAFQNFSRKIGVI 1463


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
            gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  421 bits (1082), Expect(2) = e-146
 Identities = 213/396 (53%), Positives = 271/396 (68%), Gaps = 1/396 (0%)
 Frame = -2

Query: 1537 AVPEEPTSFSQVSKFSEWRLAMPHEFDALMSTNTWSLVPPA-SHQNIVRYRWICKTKHLS 1361
            A   EP +  Q  K   WR AM  E +A +  +TW LVPP  SH  IV  RWI   K+ S
Sbjct: 951  AAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNS 1010

Query: 1360 DGSIE*RKARLVAKGYSQLEGLDYKETFSLVIKPTTIRLVLSIAISLGWSIQQLDVQNAF 1181
            DGS+   KARLVAKGY+Q  GLDY ETFS VIK T+IR+VL +A+   W I+QLDV NAF
Sbjct: 1011 DGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAF 1070

Query: 1180 LHGHLDEHVFMTQPPGFVHLEFPNYVCKLNRALYGLKQAPRAWYARLSSRLLELGFVISK 1001
            L G L + V+M+QPPGF+  + PNYVCKL +ALYGLKQAPRAWY  L + LL +GFV S 
Sbjct: 1071 LQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSV 1130

Query: 1000 SDTSLFIYRHQSVVLYFLVYVDDIVFTGSNTKIMPELVSILSNDFPLKQLGDLHYFLGLE 821
            SDTSLF+ +    ++Y LVYVDDI+ TG++  ++   +  LS  F +K   +LHYFLG+E
Sbjct: 1131 SDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIE 1190

Query: 820  CRRDSFGLKISQRKYIIDLLKKTNMLQCKLVGNPMSPSTKLSAFDSTSFEDPTLYRSVVG 641
             +R   GL +SQR+YI+DLL +TNM+  K V  PM+PS KLS +  T   DPT YR +VG
Sbjct: 1191 AKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVG 1250

Query: 640  SLQYLLFTRPDLAFSVNRVCQYMHAPCVSHWQSVKRILRYLKQTMDFGLFLQPSTTPSLV 461
            SLQYL FTRPD++++VNR+ Q+MH P   H Q++KRILRYL  T + G+FL+   T SL 
Sbjct: 1251 SLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLH 1310

Query: 460  AYTDADWVGCPDDRKSTGGYCIFYGKNLVFWSSKKQ 353
            AY+DADW G  DD  ST GY ++ G + + WSSKKQ
Sbjct: 1311 AYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQ 1346



 Score =  127 bits (319), Expect(2) = e-146
 Identities = 56/117 (47%), Positives = 85/117 (72%)
 Frame = -1

Query: 362  QEAKYIARSSIEVEYKALAHATCELLWLQSLMTELGIFLSTPPTLFCDNLGATYLSMNPI 183
            ++ K + RSS E EY+++A+ + E+ W+ SL+TELGI L+ PP ++CDN+GATYL  NP+
Sbjct: 1344 KKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPV 1403

Query: 182  MHSRTKHVDVDYHFVRDRIQAKALQVSFLSSKDQIVDIFTKPLSISRFATLRSSLTV 12
             HSR KH+ +DYHF+R+++Q+ AL+V  +S+ DQ+ D  TKPLS + F    S + V
Sbjct: 1404 FHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460