BLASTX nr result
ID: Akebia23_contig00015374
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00015374
(1067 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008963682.1| RNA polymerase beta (chloroplast) [Liquidamb... 369 e-103
gb|ADD31180.1| RNA polymerase beta' subunit protein [Liquidambar... 367 e-102
gb|ADD31179.1| RNA polymerase beta' subunit protein [Heuchera sa... 366 e-102
gb|ADD31175.1| RNA polymerase beta' subunit protein [Cornus flor... 366 e-102
gb|AAZ94642.1| RNA polymerase beta I subunit [Cucumis sativus] 366 e-102
emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus] 366 e-102
gb|AHM89975.1| RNA polymerase beta (chloroplast) [Lagenaria sice... 366 e-102
gb|AHM88970.1| RNA polymerase beta (chloroplast) [Lagenaria sice... 366 e-102
gb|AHM88912.1| RNA polymerase beta (chloroplast) [Lagenaria sice... 366 e-102
gb|AHM88855.1| RNA polymerase beta (chloroplast) [Lagenaria sice... 366 e-102
gb|AHM88739.1| RNA polymerase beta (chloroplast) [Lagenaria sice... 366 e-102
gb|AHM88680.1| RNA polymerase beta (chloroplast) [Lagenaria sice... 366 e-102
ref|YP_247590.2| RNA polymerase beta' subunit [Cucumis sativus] 366 e-102
sp|Q4VZP2.3|RPOC1_CUCSA RecName: Full=DNA-directed RNA polymeras... 366 e-102
gb|AHM91213.1| RNA polymerase beta, partial (chloroplast) [Lagen... 366 e-102
gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum] 365 e-102
ref|YP_008963471.1| RNA polymerase beta (chloroplast) [Penthorum... 365 e-102
ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus ... 365 e-101
ref|YP_740556.1| RNA polymerase beta [Platanus occidentalis] gi|... 365 e-101
ref|NP_054923.1| RNA polymerase beta' subunit [Spinacia oleracea... 365 e-101
>ref|YP_008963682.1| RNA polymerase beta (chloroplast) [Liquidambar formosana]
gi|491650362|gb|AGL13422.1| RNA polymerase beta
(chloroplast) [Liquidambar formosana]
Length = 682
Score = 369 bits (947), Expect(2) = e-103
Identities = 174/184 (94%), Positives = 180/184 (97%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
EDPKFCEQCGVEFVDSR+RRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLR+I DYSL EWKELGEEG+AGNEWEDRKIGRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 202 QLADLDLRIIIDYSLVEWKELGEEGSAGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-103
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>gb|ADD31180.1| RNA polymerase beta' subunit protein [Liquidambar styraciflua]
Length = 682
Score = 367 bits (943), Expect(2) = e-102
Identities = 173/184 (94%), Positives = 179/184 (97%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
EDPKFCEQCGVEFVDSR+RRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLR+I DYSL EWKELGEEG+AGNEWEDRKIGRRKDFLVRRM+L KHFIRTN+EP
Sbjct: 202 QLADLDLRIIIDYSLVEWKELGEEGSAGNEWEDRKIGRRKDFLVRRMELVKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>gb|ADD31179.1| RNA polymerase beta' subunit protein [Heuchera sanguinea]
Length = 689
Score = 366 bits (939), Expect(2) = e-102
Identities = 173/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
EDPKFCEQCGVEFVDSR+RRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 89 EDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 148
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARP+AKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPVAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 208
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI D SL EWKELGEEG GNEWEDRKIGRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 209 QLADLDLRLIIDSSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 268
Query: 543 EWMV 554
EWMV
Sbjct: 269 EWMV 272
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 292 GKLMSSDINELYRRV 306
>gb|ADD31175.1| RNA polymerase beta' subunit protein [Cornus florida]
Length = 688
Score = 366 bits (939), Expect(2) = e-102
Identities = 173/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
EDPKFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 89 EDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 148
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 208
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QL+DLDLR+I DYSL EWKELGEEG GNEWEDRKIGRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 209 QLSDLDLRIIIDYSLVEWKELGEEGLTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 268
Query: 543 EWMV 554
EWMV
Sbjct: 269 EWMV 272
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 292 GKLMSSDINELYRRV 306
>gb|AAZ94642.1| RNA polymerase beta I subunit [Cucumis sativus]
Length = 687
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 89 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 148
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 208
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 209 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 268
Query: 543 EWMV 554
EWMV
Sbjct: 269 EWMV 272
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 292 GKLMSSDINELYRRV 306
>emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus]
Length = 687
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 89 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 148
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 208
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 209 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 268
Query: 543 EWMV 554
EWMV
Sbjct: 269 EWMV 272
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 292 GKLMSSDINELYRRV 306
>gb|AHM89975.1| RNA polymerase beta (chloroplast) [Lagenaria siceraria]
Length = 680
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 202 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>gb|AHM88970.1| RNA polymerase beta (chloroplast) [Lagenaria siceraria]
Length = 680
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 202 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>gb|AHM88912.1| RNA polymerase beta (chloroplast) [Lagenaria siceraria]
Length = 680
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 202 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>gb|AHM88855.1| RNA polymerase beta (chloroplast) [Lagenaria siceraria]
Length = 680
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 202 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>gb|AHM88739.1| RNA polymerase beta (chloroplast) [Lagenaria siceraria]
Length = 680
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 202 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>gb|AHM88680.1| RNA polymerase beta (chloroplast) [Lagenaria siceraria]
gi|595645572|gb|AHM89029.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595645632|gb|AHM89088.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595645692|gb|AHM89147.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595645752|gb|AHM89206.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595645812|gb|AHM89265.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595645873|gb|AHM89325.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595645933|gb|AHM89384.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595645993|gb|AHM89443.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646053|gb|AHM89502.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646114|gb|AHM89562.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646174|gb|AHM89621.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646234|gb|AHM89680.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646294|gb|AHM89739.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646354|gb|AHM89798.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646414|gb|AHM89857.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646474|gb|AHM89916.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646594|gb|AHM90034.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646654|gb|AHM90093.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646714|gb|AHM90152.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646774|gb|AHM90211.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646834|gb|AHM90270.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646894|gb|AHM90329.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595646954|gb|AHM90388.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647014|gb|AHM90447.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647074|gb|AHM90506.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647134|gb|AHM90565.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647194|gb|AHM90624.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647254|gb|AHM90683.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647314|gb|AHM90742.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647374|gb|AHM90801.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647434|gb|AHM90860.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647494|gb|AHM90919.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647554|gb|AHM90978.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647614|gb|AHM91037.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
gi|595647851|gb|AHM91270.1| RNA polymerase beta
(chloroplast) [Lagenaria siceraria]
Length = 680
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 202 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>ref|YP_247590.2| RNA polymerase beta' subunit [Cucumis sativus]
Length = 680
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 202 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>sp|Q4VZP2.3|RPOC1_CUCSA RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|115432795|gb|ABI97408.1| RNA polymerase beta' subunit
[Cucumis sativus] gi|115498294|gb|ABI98736.1| RNA
polymerase beta [Cucumis sativus]
Length = 680
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 202 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>gb|AHM91213.1| RNA polymerase beta, partial (chloroplast) [Lagenaria siceraria]
Length = 675
Score = 366 bits (939), Expect(2) = e-102
Identities = 174/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 77 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 136
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 137 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 196
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLRLI DYSL EWKELGEEG AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 197 QLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 256
Query: 543 EWMV 554
EWMV
Sbjct: 257 EWMV 260
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 280 GKLMSSDINELYRRV 294
>gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum]
Length = 687
Score = 365 bits (938), Expect(2) = e-102
Identities = 172/184 (93%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
EDPKFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 89 EDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 148
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPI KKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 208
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLR+I D SL EWKELGEEGT GNEWEDRK+GRRKDFLVRRM+LAKHF+RTN+EP
Sbjct: 209 QLADLDLRIILDNSLVEWKELGEEGTTGNEWEDRKVGRRKDFLVRRMELAKHFLRTNIEP 268
Query: 543 EWMV 554
EWMV
Sbjct: 269 EWMV 272
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 292 GKLMSSDINELYRRV 306
>ref|YP_008963471.1| RNA polymerase beta (chloroplast) [Penthorum chinense]
gi|403226772|gb|AFR25651.1| RNA polymerase beta
(chloroplast) [Penthorum chinense]
Length = 686
Score = 365 bits (938), Expect(2) = e-102
Identities = 175/188 (93%), Positives = 181/188 (96%), Gaps = 4/188 (2%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
+DPKFCEQCGVEFVDSR+RRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLV
Sbjct: 82 DDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLV 141
Query: 183 YCD----FAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAG 350
YCD F+FARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAG
Sbjct: 142 YCDVYPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAG 201
Query: 351 AIREQLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRT 530
AIREQL+DLDLRLI DYSL EWKELGEEGTAGNEWEDRKIGRRKDFLVRRM+LAKHFIRT
Sbjct: 202 AIREQLSDLDLRLIIDYSLVEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMELAKHFIRT 261
Query: 531 NVEPEWMV 554
N+EPEWMV
Sbjct: 262 NIEPEWMV 269
Score = 33.1 bits (74), Expect(2) = e-102
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 289 GKLMSSDINELYRRV 303
>ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus laevigata]
gi|309252881|gb|ADO60301.1| RNA polymerase beta I
subunit [Corynocarpus laevigata]
Length = 689
Score = 365 bits (937), Expect(2) = e-101
Identities = 172/184 (93%), Positives = 179/184 (97%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
ED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIAN+LDKPLKELEGLV
Sbjct: 89 EDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANILDKPLKELEGLV 148
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 208
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLR+I DYSL EWKELGEEG+AGNEWEDRK+GRRKDFLVRRM+LAKHFIRTN+EP
Sbjct: 209 QLADLDLRIIIDYSLVEWKELGEEGSAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 268
Query: 543 EWMV 554
EWMV
Sbjct: 269 EWMV 272
Score = 33.1 bits (74), Expect(2) = e-101
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 292 GKLMSSDINELYRRV 306
>ref|YP_740556.1| RNA polymerase beta [Platanus occidentalis]
gi|122166044|sp|Q09G55.1|RPOC1_PLAOC RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|114054375|gb|ABI49769.1| RNA polymerase beta
[Platanus occidentalis]
Length = 682
Score = 365 bits (937), Expect(2) = e-101
Identities = 173/184 (94%), Positives = 178/184 (96%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
EDPKFCEQCGVEFVDSR+RRYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPL+ELEGLV
Sbjct: 82 EDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLRELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLR+IT YSL EWKELGEEG GNEWEDRKIGRRKDFLVRRM+LAKHFIRTNVEP
Sbjct: 202 QLADLDLRIITAYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-101
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299
>ref|NP_054923.1| RNA polymerase beta' subunit [Spinacia oleracea]
gi|133438|sp|P11705.1|RPOC1_SPIOL RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|7636096|emb|CAB88716.1| RNA polymerase beta' subunit
[Spinacia oleracea]
Length = 677
Score = 365 bits (937), Expect(2) = e-101
Identities = 171/184 (92%), Positives = 176/184 (95%)
Frame = +3
Query: 3 EDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKELEGLV 182
EDPKFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLKRLPSYIAN LDKPLKELEGLV
Sbjct: 82 EDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANFLDKPLKELEGLV 141
Query: 183 YCDFAFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 362
YCDF+FARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201
Query: 363 QLADLDLRLITDYSLGEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMKLAKHFIRTNVEP 542
QLADLDLR I DYS EWKELGEEG+ GNEWEDRK+GRRKDFLVRRM+L KHFIRTN+EP
Sbjct: 202 QLADLDLRTIIDYSFAEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELVKHFIRTNIEP 261
Query: 543 EWMV 554
EWMV
Sbjct: 262 EWMV 265
Score = 33.1 bits (74), Expect(2) = e-101
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +2
Query: 605 GKLMSSDINELYRRV 649
GKLMSSDINELYRRV
Sbjct: 285 GKLMSSDINELYRRV 299