BLASTX nr result
ID: Akebia23_contig00012453
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00012453
(1839 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 245 4e-62
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 230 1e-57
gb|AFB73911.1| polyprotein [Citrus sinensis] 229 4e-57
gb|AFB73912.1| polyprotein [Citrus sinensis] 226 3e-56
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 224 1e-55
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 219 3e-54
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 219 3e-54
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 214 8e-53
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 214 8e-53
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 208 8e-51
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 205 6e-50
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 204 1e-49
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 203 2e-49
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 203 2e-49
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 202 3e-49
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 201 7e-49
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 201 9e-49
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 199 4e-48
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 199 4e-48
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 197 1e-47
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 245 bits (626), Expect = 4e-62
Identities = 160/473 (33%), Positives = 232/473 (49%), Gaps = 3/473 (0%)
Frame = +2
Query: 77 GRNNFKAWQMDCKXXXXXXXXXXXXXXKNKPSEKVTED*AEK*NKMDQKACSTIHLCLSW 256
GRN+F WQ+ K + VT + A +++KA STI LCL+
Sbjct: 13 GRNSFSLWQI--KMRALLKQQGFWAPLSKDKNAVVTPEMAI----LEEKAHSTIMLCLAD 66
Query: 257 NVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHINEFECLY 436
+V +DE TA G+ KL++LY+ + L+++LF R+ G + +H+ + L
Sbjct: 67 DVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLL 126
Query: 437 SDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKKEKFVYSDIVQAVLAKASRKGT 616
+ ++ K ED AL LL+ L +E FV Q + K+ ++ A+ ++ R
Sbjct: 127 LELRNIDVKIEDEDAALILLVSLPMSFENFV-QSFIVGKDTVSLEEVRSALHSRELRHKA 185
Query: 617 LNEEVQADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVECYKCKRKGHYKKDCPELKDN 796
+ G V C CK KGH+K DCP+ K
Sbjct: 186 NGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDV-CNYCKEKGHWKFDCPKKKKQ 244
Query: 797 HNKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVR 976
KQ DI AL A H H D W+LD+GA YH+CP R
Sbjct: 245 SEKQSVSAAVAEEDTNSEE---DI--------ALVADEHTHHSDVWVLDSGASYHICPRR 293
Query: 977 EWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGM 1156
EWFTTY +V G S+ M +S CK +G G++K + DGS L EV H+P ++K LISL +
Sbjct: 294 EWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSL 353
Query: 1157 LEAQGYRYVGENGYCNVYFGDRLLLSAVRHANLY--QGSVVEGGAMV-STVVDEKSLARA 1327
L+++G+ + G++G V+ G L+L V LY QGS V G A V S+ +K + +
Sbjct: 354 LDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTK- 412
Query: 1328 QLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
LWH+RLGH+G ++ LSK LL G K+ L+FCEHCV+GK R F IH
Sbjct: 413 -LWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIH 464
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 230 bits (587), Expect = 1e-57
Identities = 155/451 (34%), Positives = 223/451 (49%), Gaps = 13/451 (2%)
Frame = +2
Query: 173 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 352
+K T+D + K D+KA S IHL LS N+ E TA G+ KL+ + + D S
Sbjct: 41 DKRTQDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 100
Query: 353 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 532
+L++KLF +LQ + DH++ F+ + +D S+ K+++ AL LL L + F D
Sbjct: 101 HLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRD 160
Query: 533 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 703
+ ++ ++ A+ AK K + E QA+ L V
Sbjct: 161 TIL-YSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKS 219
Query: 704 XXXGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXX-D 865
R K C CKR GH C +L+D + D
Sbjct: 220 SSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTD 279
Query: 866 ILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCK 1045
+L A + D W+LDT YH+CP R+WF TY V+G +V+MGD PC+
Sbjct: 280 EKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCE 337
Query: 1046 TMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL 1225
G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G +
Sbjct: 338 VAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLV 397
Query: 1226 LLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRG 1393
++ A ++ ANLY QG+ + G V+TV D S + A LWHMRLGH+ L LSKRG
Sbjct: 398 VMKASIKSANLYHLQGTTILGN--VATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRG 455
Query: 1394 LLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
LL G ++KL FCEHC++GK RV F H
Sbjct: 456 LLDGQSISKLKFCEHCIFGKHKRVKFNTSTH 486
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 229 bits (583), Expect = 4e-57
Identities = 156/491 (31%), Positives = 242/491 (49%), Gaps = 10/491 (2%)
Frame = +2
Query: 56 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXXKNKPSEKVTED*AEK*NKMDQKACST 235
++I + NG NNF W+M K +P E +T+D K N++D A S
Sbjct: 5 YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIG--ERPME-ITDD---KWNEVDGNAISD 57
Query: 236 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 415
+HL L+ V + A++ TAK I D L LY + +L++KL+T R+ ++TDHI
Sbjct: 58 LHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHI 117
Query: 416 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKK-EKFVYSDIVQAVL 592
N + L+S +LG E++++A LL L ++ + +T E V+ D+ +VL
Sbjct: 118 NTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVESLVFDDVAASVL 177
Query: 593 AKASR-KGTLNEEV---QADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVECYKCKRKG 760
+ SR K N + QA+ LSVT G R V+CY C +KG
Sbjct: 178 NEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKKNVKCYNCGKKG 237
Query: 761 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGS-HDHLYDGWM 937
H KK+C + + +IL ++A T L D W+
Sbjct: 238 HVKKECWSNQKRREGKEPETSNAQGCVASTSDDGEILY----SEATTVSEGRKRLSDVWL 293
Query: 938 LDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCH 1117
+D+GA +H+ REWF TY + G SV MG+ + G+GT+K ++ DG+ R + EV H
Sbjct: 294 IDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIGEVRH 353
Query: 1118 IPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGA 1285
+ L K L+SLG +++ GY+ ENG + G +L+ + ANL+ ++ E A
Sbjct: 354 VNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETLQEADA 413
Query: 1286 MVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRV 1465
V++ +E ++ +WH++LGH+ L+ LS+R LL G K L FCEHCV KQ R+
Sbjct: 414 CVASNGEESTM----MWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSKQHRL 469
Query: 1466 SFGDGIHYGGC 1498
F I C
Sbjct: 470 KFSRSIARSKC 480
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 226 bits (575), Expect = 3e-56
Identities = 152/490 (31%), Positives = 239/490 (48%), Gaps = 9/490 (1%)
Frame = +2
Query: 56 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXXKNKPSEKVTED*AEK*NKMDQKACST 235
++I + NG NNF W+M K +P E +T+D K N++D A S
Sbjct: 5 YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIG--ERPME-ITDD---KWNEVDSNAISD 57
Query: 236 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 415
+HL L+ V + A++ TAK I D L LY + +L++KL+T R+ ++TDHI
Sbjct: 58 LHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHI 117
Query: 416 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKK-EKFVYSDIVQAVL 592
N + L+S +LG E++++A LL L ++ + +T + V+ D+ +VL
Sbjct: 118 NTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVDSLVFDDVAASVL 177
Query: 593 AKASR-KGTLNEEV---QADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVECYKCKRKG 760
+ SR K N + QA+ LSVT G R V+CY C +KG
Sbjct: 178 NEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVKCYNCGKKG 237
Query: 761 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGSHDHLYDGWML 940
H KK+C + + +IL + + L D W++
Sbjct: 238 HVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILYS---EATIVSEGRKRLSDVWLI 294
Query: 941 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 1120
D+GA +H+ REWF TY + G SV MG+ + G+GT+K ++ DG+ R + EV H+
Sbjct: 295 DSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIEEVRHV 354
Query: 1121 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 1288
L K L+SLG +++ G + ENG + G +L+ A + ANL+ ++ E A
Sbjct: 355 NGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETLQEADAC 414
Query: 1289 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 1468
V++ +E ++ +WH++LGH+ L+ LS+R L G K L FCEHCV KQ R+
Sbjct: 415 VASNGEESTM----MWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSKQHRLK 470
Query: 1469 FGDGIHYGGC 1498
F I C
Sbjct: 471 FSRSIARSKC 480
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 224 bits (570), Expect = 1e-55
Identities = 147/429 (34%), Positives = 213/429 (49%), Gaps = 12/429 (2%)
Frame = +2
Query: 236 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 415
IHL LS N+ E TA + KL+ + + D S +L++KLF +LQ + DH+
Sbjct: 4 IHLHLSNNILQEVLKEKTATALWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHL 63
Query: 416 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKKEKFVYSDIVQAVLA 595
+ F+ + +D S+ K+++ L LL L + F D + ++ ++ A+ A
Sbjct: 64 STFKEIVADLESMEIKYDEEDLGLILLCSLPSSYANFRDTIL-YSRDTLTLQEVYDALHA 122
Query: 596 KASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVE-----CYKCK 751
K K + E Q + L V R K C CK
Sbjct: 123 KEKMKKMVPSEGSNSQPESLVVRGRQQEKNTDNKSRDKSSSGYRGRSKSRGRYKSCKYCK 182
Query: 752 RKGHYKKDCPELKDNH-NKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGSHDHLYD 928
R GH DC +L++ +K D +L A D
Sbjct: 183 RGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQTS--D 240
Query: 929 GWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIE 1108
W+LDTG YH+CP R+WFTTY V+G +V+MGD+ PCK GVGT++ ++ DG R L +
Sbjct: 241 EWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSD 300
Query: 1109 VCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSA-VRHANLY--QGSVVEG 1279
V HIP+L + LISL L+ +GYRY G +G V G +++ A +++A+LY QG+ + G
Sbjct: 301 VRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVG 360
Query: 1280 GAMVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQC 1459
V+ V D SL+ + LWHMRLGH+ L LSKRGLL G + KL FCEHC++GK
Sbjct: 361 N--VAAVTD--SLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHK 416
Query: 1460 RVSFGDGIH 1486
RV F H
Sbjct: 417 RVKFTTSTH 425
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 219 bits (559), Expect = 3e-54
Identities = 149/450 (33%), Positives = 219/450 (48%), Gaps = 12/450 (2%)
Frame = +2
Query: 173 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 352
+K T+D + K D+KA S IHL LS N+ E TA G+ KL+ + + D S
Sbjct: 76 DKRTQDWSNDEKKKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 135
Query: 353 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 532
+L++KLF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D
Sbjct: 136 HLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRD 195
Query: 533 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 703
+ + + ++ A+ AK K + E QA+ L V
Sbjct: 196 TIL-YSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKS 254
Query: 704 XXXGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDI 868
R K C CKR GH +C +L+D +K+
Sbjct: 255 SSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDK-DKRTGKYIPKGKKEEEGKAAVVT 313
Query: 869 LIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKT 1048
D + D W+LDT YH+CP R+WF TY ++G +V+MGD PC+
Sbjct: 314 DEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEV 373
Query: 1049 MGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLL 1228
G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G ++
Sbjct: 374 AGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 433
Query: 1229 LSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRGL 1396
+ A ++ ANLY +G+ + G V+ V D S + A LWHMRLGH+ L LSKR L
Sbjct: 434 MKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKREL 491
Query: 1397 LGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
L G + KL FCEHC++GK RV F H
Sbjct: 492 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 521
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 219 bits (559), Expect = 3e-54
Identities = 149/450 (33%), Positives = 219/450 (48%), Gaps = 12/450 (2%)
Frame = +2
Query: 173 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 352
+K T+D + K D+KA S IHL LS N+ E TA G+ KL+ + + D S
Sbjct: 76 DKRTQDWSNDEKKKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 135
Query: 353 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 532
+L++KLF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D
Sbjct: 136 HLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRD 195
Query: 533 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 703
+ + + ++ A+ AK K + E QA+ L V
Sbjct: 196 TIL-YSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKS 254
Query: 704 XXXGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDI 868
R K C CKR GH +C +L+D +K+
Sbjct: 255 SSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDK-DKRTGKYIPKGKKEEEGKAAVVT 313
Query: 869 LIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKT 1048
D + D W+LDT YH+CP R+WF TY ++G +V+MGD PC+
Sbjct: 314 DEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEV 373
Query: 1049 MGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLL 1228
G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G ++
Sbjct: 374 AGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 433
Query: 1229 LSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRGL 1396
+ A ++ ANLY +G+ + G V+ V D S + A LWHMRLGH+ L LSKR L
Sbjct: 434 MKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKREL 491
Query: 1397 LGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
L G + KL FCEHC++GK RV F H
Sbjct: 492 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 521
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 214 bits (546), Expect = 8e-53
Identities = 148/453 (32%), Positives = 219/453 (48%), Gaps = 15/453 (3%)
Frame = +2
Query: 173 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 352
+K T D + K D+KA S IHL LS N+ E A G+ KL+ + + D S
Sbjct: 248 DKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKM 307
Query: 353 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 532
+L++ LF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D
Sbjct: 308 HLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRD 367
Query: 533 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 703
+ ++ ++ A+ K K + E QA+ L + WG
Sbjct: 368 TIL-YSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGL-IVWGRQQEKNTKNQSRDK 425
Query: 704 XXXG-------RDMFKVECYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXX 862
R +K C CKR GH +C +L D +
Sbjct: 426 SSSSYRGRSKSRGRYK-SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVV 484
Query: 863 -DILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRP 1039
D +L A + D W+L+T +YH+CP R+WF TY V+ +V+MGD P
Sbjct: 485 TDEKSDAELLVAYAGCAQTS--DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTP 542
Query: 1040 CKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGD 1219
C+ G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G
Sbjct: 543 CEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGS 602
Query: 1220 RLLLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSK 1387
+++ A ++ ANLY +G+ + G V+ V D S + A LWHMRLGH+ L LSK
Sbjct: 603 LVVMKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSK 660
Query: 1388 RGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
RGLL G + KL FCEHC++GK RV F H
Sbjct: 661 RGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 693
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 214 bits (546), Expect = 8e-53
Identities = 148/453 (32%), Positives = 219/453 (48%), Gaps = 15/453 (3%)
Frame = +2
Query: 173 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 352
+K T D + K D+KA S IHL LS N+ E A G+ KL+ + + D S
Sbjct: 41 DKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKM 100
Query: 353 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 532
+L++ LF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D
Sbjct: 101 HLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRD 160
Query: 533 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 703
+ ++ ++ A+ K K + E QA+ L + WG
Sbjct: 161 TIL-YSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGL-IVWGRQQEKNTKNQSRDK 218
Query: 704 XXXG-------RDMFKVECYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXX 862
R +K C CKR GH +C +L D +
Sbjct: 219 SSSSYRGRSKSRGRYK-SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVV 277
Query: 863 -DILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRP 1039
D +L A + D W+L+T +YH+CP R+WF TY V+ +V+MGD P
Sbjct: 278 TDEKSDAELLVAYAGCAQTS--DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTP 335
Query: 1040 CKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGD 1219
C+ G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G
Sbjct: 336 CEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGS 395
Query: 1220 RLLLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSK 1387
+++ A ++ ANLY +G+ + G V+ V D S + A LWHMRLGH+ L LSK
Sbjct: 396 LVVMKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSK 453
Query: 1388 RGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
RGLL G + KL FCEHC++GK RV F H
Sbjct: 454 RGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 486
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 208 bits (529), Expect = 8e-51
Identities = 149/451 (33%), Positives = 213/451 (47%), Gaps = 13/451 (2%)
Frame = +2
Query: 173 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 352
+K T+D + KMD+KA S IHL LS N+ E TA G+ KL+ + + D +
Sbjct: 41 DKRTQDWSNDEKKMDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTN-- 98
Query: 353 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 532
G +M DH++ F+ + +D S+ K+++ L LL L + F D
Sbjct: 99 ------------DGSVM-DHLSVFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRD 145
Query: 533 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 703
+ ++ ++ A+ AK K + E QA+ L V
Sbjct: 146 TIL-YSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRDKS 204
Query: 704 XXXGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXX-D 865
R K C CKR GH C +L+D + D
Sbjct: 205 SSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTD 264
Query: 866 ILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCK 1045
+L A + D W+LDT YH+CP R+WF TY V+G +V+MGD PC+
Sbjct: 265 EKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCE 322
Query: 1046 TMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL 1225
G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G +
Sbjct: 323 VAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLV 382
Query: 1226 LLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRG 1393
++ A ++ ANLY QG+ + G V+TV D S + A LWHMRLGH+ L LS RG
Sbjct: 383 VMKADIKSANLYHLQGTTILGN--VATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRG 440
Query: 1394 LLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
LL G + KL FCEHC++GK RV F H
Sbjct: 441 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 471
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 205 bits (521), Expect = 6e-50
Identities = 146/451 (32%), Positives = 214/451 (47%), Gaps = 13/451 (2%)
Frame = +2
Query: 173 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 352
+K T+D + K D+K S IHL LS N+ E TA G+ KL+ + + D S
Sbjct: 41 DKRTQDWSNDEKKRDRKTMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 100
Query: 353 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 532
+L++KLF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D
Sbjct: 101 HLKQKLFLHKLQDDGSVMDHLSAFKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRD 160
Query: 533 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 703
+ + ++ A+ AK K + E QA+ L V
Sbjct: 161 TIL-YSCDTLTLKEVYDALHAKEKIKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKS 219
Query: 704 XXXGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXX-D 865
R K C KR GH +C +L+D + D
Sbjct: 220 SSSYRGRSKSRGRYKSCKYYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTD 279
Query: 866 ILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCK 1045
+L A + D W+LDT YH+C R+WF TY V+G +V+MGD PC+
Sbjct: 280 EKSDAELLVAYAGCAQTS--DQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCE 337
Query: 1046 TMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL 1225
GV TV+ ++ DG R L +V HIP L + LISL L+ + Y+Y G +G V G +
Sbjct: 338 VAGVETVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLV 397
Query: 1226 LLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRG 1393
++ A ++ ANLY +G+ + G ++ V D + A LWHMRLGH+ L LSKRG
Sbjct: 398 VMKADIKSANLYHVRGTTILGN--IAAVSDSLYNSDATNLWHMRLGHMSEIGLAELSKRG 455
Query: 1394 LLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
LL G + KL FCEHC++GK RV F H
Sbjct: 456 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 486
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 204 bits (518), Expect = 1e-49
Identities = 129/352 (36%), Positives = 176/352 (50%), Gaps = 10/352 (2%)
Frame = +2
Query: 461 KFEDSQKALFLLIFLLPKWEPFVDQMTTLKKEKFVYSDIVQAVLA--------KASRKGT 616
KFED AL LL L ++E + T L ++ V D+V + L K K T
Sbjct: 79 KFEDEDLALMLLSSLPDEFEHL--ETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKST 136
Query: 617 LNEEVQADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVECYKCKRKGHYKKDCPELKDN 796
+EE ++ GR + K EC C KGH+KKDCP+L+
Sbjct: 137 TSEE------ALVARGRQQSQTKERRGMSKSKGRAVAKDECAFCHEKGHWKKDCPKLQ-- 188
Query: 797 HNKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVR 976
K+ DI + L+ +L D W+LD+G YH+CP+R
Sbjct: 189 --KKEKVLQDANVAECKSDVESDISLIVSLSASL-------YLDEWILDSGCTYHMCPIR 239
Query: 977 EWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGM 1156
+WF ++E+ G V MG+ PCKT+G+G++K + DGS R L +V ++P L K LISLG
Sbjct: 240 DWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGA 299
Query: 1157 LEAQGYRYVGENGYCNVYFGDRLLLSAVRHANL--YQGSVVEGGAMVSTVVDEKSLARAQ 1330
LE++G +G G ++L V NL YQGS V G +T +K +
Sbjct: 300 LESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEATK 359
Query: 1331 LWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
LWHMRLGH G L+ +K+GLL G K KL+FCEHCV GKQ RV FG IH
Sbjct: 360 LWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIH 411
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 203 bits (516), Expect = 2e-49
Identities = 140/481 (29%), Positives = 234/481 (48%), Gaps = 9/481 (1%)
Frame = +2
Query: 56 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXXKNKPSEKVTED*AEK*NKMDQKACST 235
F+I + NG +NF W++ K +P++ +T+D K +MD A +
Sbjct: 5 FEIPKFNG-SNFSLWKLKIKAILRKDNCLPAID--GRPAD-ITDD---KRKEMDDNAVAN 57
Query: 236 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 415
+HL ++ +V + A++ TAK I D L LY + +L+++L+TFR+ M DHI
Sbjct: 58 LHLAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHI 117
Query: 416 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 592
N +++ + ++++A LL L ++ V +T ++ ++D+ A+L
Sbjct: 118 NNLNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAIL 177
Query: 593 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVECYKCKRKG 760
+ SR+ + Q + L+VT G R ++CY C ++G
Sbjct: 178 EEESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQNHGRSTSRRKTNLKCYNCGKRG 237
Query: 761 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGSHDHLYDGWML 940
H KKDC K + K ++L A++ + L D W++
Sbjct: 238 HLKKDCWSNKKSGEKSSEASTSQGCVASTSDDG-EVLYS---EAAVSTKGKNRLTDVWIV 293
Query: 941 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 1120
D+GA +H+ P R+WF TY V +V MG+ + +G+GTVK ++ DG+ R L EV H+
Sbjct: 294 DSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHV 353
Query: 1121 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ--GSVVE-GGAM 1288
L+K L+S+G L+ GY+Y + G V G +++ A + ANLY G + A
Sbjct: 354 KELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADAS 413
Query: 1289 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 1468
V+ E++ +WH RLGH+ L+ L++R L+ G K L FCEHCV KQ R+
Sbjct: 414 VAVGSQEET---TMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLK 470
Query: 1469 F 1471
F
Sbjct: 471 F 471
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 203 bits (516), Expect = 2e-49
Identities = 140/481 (29%), Positives = 232/481 (48%), Gaps = 9/481 (1%)
Frame = +2
Query: 56 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXXKNKPSEKVTED*AEK*NKMDQKACST 235
F+I + NGRN F W++ K +P++ +T+ EK +MD A +
Sbjct: 5 FEIEKFNGRN-FSLWKL--KIRAILRKDNCLDAIDGRPAD-ITD---EKWKEMDDNAVAN 57
Query: 236 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 415
+HL ++ +V + A++ TAK I D L LY + +L+++L+T R+ +TDHI
Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117
Query: 416 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 592
N L+S + K ++++A LL L ++ + +T + + D+ A+L
Sbjct: 118 NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAIL 177
Query: 593 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVECYKCKRKG 760
+ SR+ E QA+ L++T G R ++CY C KG
Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKG 237
Query: 761 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGSHDHLYDGWML 940
H KK+C +K N K +IL A ++ L D W++
Sbjct: 238 HVKKECWNIKKNGEKNSEASTSQGCVASTSDDG-EILYS---EAATSSKGERRLNDVWIM 293
Query: 941 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 1120
D+GA +H+ P R+WF +Y + SV MG+ + GVGT++ ++ DG+ R++ V H+
Sbjct: 294 DSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353
Query: 1121 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 1288
L K L+S+G L+ G + E+G V G+ +++ A + +NLY ++ E A
Sbjct: 354 KGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413
Query: 1289 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 1468
V+ E++ +WH RLGH+ L+ L++R LL G K L FCEHCV KQ R+
Sbjct: 414 VAASSQEET---TMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLK 470
Query: 1469 F 1471
F
Sbjct: 471 F 471
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 202 bits (515), Expect = 3e-49
Identities = 140/481 (29%), Positives = 231/481 (48%), Gaps = 9/481 (1%)
Frame = +2
Query: 56 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXXKNKPSEKVTED*AEK*NKMDQKACST 235
F+I + NGRN F W++ K +P++ +T+ EK +MD A +
Sbjct: 5 FEIEKFNGRN-FSLWKL--KIRAILRKDNCLDAIDGRPAD-ITD---EKWKEMDDNAVAN 57
Query: 236 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 415
+HL ++ +V + A++ TAK I D L LY + +L+++L+T R+ +TDHI
Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117
Query: 416 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 592
N L+S + K ++++A LL L ++ + +T + + D+ A+L
Sbjct: 118 NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177
Query: 593 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVECYKCKRKG 760
+ SR+ E QA+ L++T G R ++CY C KG
Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKG 237
Query: 761 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGSHDHLYDGWML 940
H KK+C +K N K +IL A ++ L D W++
Sbjct: 238 HVKKECWNIKKNGEKNSEASTSQGCVASTSDDG-EILYS---EAATSSKGERRLNDVWIM 293
Query: 941 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 1120
D+GA +H+ P R+WF +Y + SV MG+ + GVGT++ ++ DG+ R++ V H+
Sbjct: 294 DSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353
Query: 1121 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 1288
L K L+S+G L+ G + E+G V G+ +++ A + +NLY ++ E A
Sbjct: 354 KGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413
Query: 1289 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 1468
V+ E++ +WH RLGH+ L+ L +R LL G K L FCEHCV KQ R+
Sbjct: 414 VAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLK 470
Query: 1469 F 1471
F
Sbjct: 471 F 471
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 201 bits (512), Expect = 7e-49
Identities = 132/400 (33%), Positives = 196/400 (49%), Gaps = 13/400 (3%)
Frame = +2
Query: 326 LQNDQMSVTYLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFL 505
+ D S +L++KLF +LQ + DH++ F+ + +D S+ K+++ L LL L
Sbjct: 1 MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60
Query: 506 LPKWEPFVDQMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXX 676
+ F D + ++ ++ A+ AK K + E QA+ L V
Sbjct: 61 PSSYANFRDTIL-YSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKN 119
Query: 677 XXXXXXXXXXXXGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNK-QXXXXXXXXXX 838
R K C CKR GH +C +L+D + +
Sbjct: 120 TNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEE 179
Query: 839 XXXXXXXXDILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSV 1018
D +L A + D W+LDT YH+CP R+WF TY V+G +V
Sbjct: 180 EGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFATYEAVQGGTV 237
Query: 1019 MMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGY 1198
+MGD PC+ G+GTV+ ++ DG R L++V HIP L + LISL L+ +GY+Y G +G
Sbjct: 238 LMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGI 297
Query: 1199 CNVYFGDRLLLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVS 1366
V G +++ A +++ANLY +G+ + G V+ V D S + A LWHMRLGH+
Sbjct: 298 LKVTKGSLVVMKADIKYANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMSEI 355
Query: 1367 ELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
L LSKRGLL G + KL FCEHC++GK RV F H
Sbjct: 356 GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 395
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 201 bits (511), Expect = 9e-49
Identities = 140/452 (30%), Positives = 224/452 (49%), Gaps = 14/452 (3%)
Frame = +2
Query: 173 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 352
+K TE AE+ K D+KA S I L LS ++ E TA + KL+++ + D S
Sbjct: 41 KKTTEWTAEEKRK-DRKALSLIQLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKM 99
Query: 353 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 532
+++ KLF+ +LQ + +HI+ F+ + +D +S+ +F+D L LL L + F D
Sbjct: 100 HIKMKLFSHKLQESGSVLNHISVFKEIIADLVSMEVQFDDEDLGLLLLCSLPSLYANFRD 159
Query: 533 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEEVQADDLSVTWGXXXXXXXXXXXXXXXXX 712
+ L +++ +++ +A+ + KG VQ+D S
Sbjct: 160 TIL-LSRDELTLAEVYEALQNREKMKGM----VQSDASSSKGKALQVRGRSEQRTYNDSN 214
Query: 713 GRDMF----------KVECYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXX 862
RD K C CK+K H+ ++C +L+ N K+
Sbjct: 215 DRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQ-NKEKRKSDGKASVVTSAENSDSA 273
Query: 863 DILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVK-GSSVMMGDSRP 1039
D L+ A SHD W+LDT L+ +C R+WF++++ V+ G V MGD+ P
Sbjct: 274 DCLV----FFAGCVASHDE----WILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNP 325
Query: 1040 CKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGD 1219
+ MG+G+V+ + DG R L +V HIP +++ LISL L+A+GY+Y G G V G
Sbjct: 326 REIMGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGS 385
Query: 1220 RL-LLSAVRHANLY--QGSVVEGGAMVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKR 1390
+ ++ + ANLY +GS + G ++ + V + ++ LWHMRLGH+ + L KR
Sbjct: 386 LVYMIGDMNSANLYVLRGSTLHG-SLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKR 444
Query: 1391 GLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
LL G + FCEHCV+GK RV F +H
Sbjct: 445 NLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVH 476
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 199 bits (506), Expect = 4e-48
Identities = 139/481 (28%), Positives = 229/481 (47%), Gaps = 9/481 (1%)
Frame = +2
Query: 56 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXXKNKPSEKVTED*AEK*NKMDQKACST 235
F+I + NGR F W++ K +P++ +T+ EK +MD A +
Sbjct: 5 FEIEKFNGRK-FSLWKL--KIRAILRKDNCLDAIDGRPAD-ITD---EKWKEMDDNAVAN 57
Query: 236 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 415
+HL ++ +V + A++ TAK I D L LY + +L+++L+T R+ +TDHI
Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117
Query: 416 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 592
N L+S + K ++++A LL L ++ + +T + + D+ A+L
Sbjct: 118 NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177
Query: 593 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVECYKCKRKG 760
+ SR+ E QA+ L++T G R ++CY C KG
Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCGMKG 237
Query: 761 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGSHDHLYDGWML 940
H KK+C K N K +IL A ++ L D W++
Sbjct: 238 HVKKECWNNKKNGEKNSEATTSQGCVASTSDDG-EILYS---EAATSSEGERQLNDVWIM 293
Query: 941 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 1120
D+GA +H+ P R+WF +Y + SV MG+ + GVGT++ ++ DG+ R++ V H+
Sbjct: 294 DSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353
Query: 1121 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 1288
L K L+S+G L+ G + E+G V G+ +++ A + +NLY ++ E A
Sbjct: 354 KGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413
Query: 1289 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 1468
V+ E++ +WH RLGH+ L+ L +R LL G K L FCEHCV KQ R+
Sbjct: 414 VAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLK 470
Query: 1469 F 1471
F
Sbjct: 471 F 471
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 199 bits (506), Expect = 4e-48
Identities = 135/448 (30%), Positives = 219/448 (48%), Gaps = 10/448 (2%)
Frame = +2
Query: 173 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 352
+K TE AE+ K D+KA I L LS ++ E TA + KL+++ + D S
Sbjct: 44 KKSTEWTAEEKRK-DRKALLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKM 102
Query: 353 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 532
+++ KLF+ +LQ + +HI+ F+ + D +S+ +F+D L LL L + F D
Sbjct: 103 HIKMKLFSHKLQESGSVLNHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRD 162
Query: 533 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEEVQAD--DLSVTWGXXXXXXXXXXXXXXX 706
+ L +++ +++ +A+ + KG + + + + G
Sbjct: 163 TIL-LSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDK 221
Query: 707 XXGRDMFKVE----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDILI 874
R K C CK+K H+ ++C +L+ N K+ D L+
Sbjct: 222 SQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQ-NKEKRKSDGKASVVTSAENSDSGDCLV 280
Query: 875 GGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVK-GSSVMMGDSRPCKTM 1051
A SHD W+LDT +H+C R+WF++Y+ V+ G V MGD P + +
Sbjct: 281 ----VFAGCVASHDE----WILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIV 332
Query: 1052 GVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL-L 1228
G+G+V+ + DG R L +V HIP +++ LISL L+A+GY+Y G V G + +
Sbjct: 333 GIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYM 392
Query: 1229 LSAVRHANLY--QGSVVEGGAMVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLG 1402
+ + ANLY +GS + G + V ++ + + LWHMRLGH+ + L KR LL
Sbjct: 393 IGDMNSANLYVLRGSTLHGSVTAAAVSKDEPI-KTNLWHMRLGHMSELGMAELMKRNLLD 451
Query: 1403 GDKMAKLDFCEHCVYGKQCRVSFGDGIH 1486
G K+ FCEHCV+GK RV F +H
Sbjct: 452 GCTQGKMKFCEHCVFGKHKRVKFNTSVH 479
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 197 bits (501), Expect = 1e-47
Identities = 137/481 (28%), Positives = 227/481 (47%), Gaps = 9/481 (1%)
Frame = +2
Query: 56 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXXKNKPSEKVTED*AEK*NKMDQKACST 235
F+I + NGRN F W++ + + +T+ EK +MD A +
Sbjct: 5 FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGR---LADITD---EKWKEMDDNAVAN 57
Query: 236 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 415
+HL ++ +V + A++ TAK I D L LY + +L+++L+T ++ +TDHI
Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHI 117
Query: 416 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 592
N L+S + K +++A LL L ++ + +T + + D+ A+L
Sbjct: 118 NTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177
Query: 593 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXXGRDMFKVECYKCKRKG 760
+ SR+ E QA+ L++T G R ++CY C KG
Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKG 237
Query: 761 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXXDILIGGDLAQALTAGSHDHLYDGWML 940
H KK+C +K N K +IL A ++ L D W++
Sbjct: 238 HVKKECWNIKKNGEKNSEASTSQGCVASTSDDG-EILYS---EAATSSKGERRLNDVWIM 293
Query: 941 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 1120
D+GA +H+ P R+WF +Y + SV MG+ + GVGT++ ++ DG+ R++ V H+
Sbjct: 294 DSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353
Query: 1121 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 1288
L K L+S+G L+ G + E+G V G+ +++ A + +NLY ++ E A
Sbjct: 354 KGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413
Query: 1289 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 1468
V+ E++ +WH RLGH+ L+ L +R LL G K L FCEHCV KQ R+
Sbjct: 414 VAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLK 470
Query: 1469 F 1471
F
Sbjct: 471 F 471