BLASTX nr result
ID: Akebia23_contig00009958
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00009958
(6436 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_224218.1| replicase-associated polyprotein [Citrus sudden... 1558 0.0
gb|ADD13602.1| replicase-associated polyprotein [Oat blue dwarf ... 1554 0.0
ref|NP_044447.1| replicase-associated polyprotein [Oat blue dwar... 1551 0.0
ref|YP_003475889.1| replicase-associated polyprotein [Olive late... 1545 0.0
gb|ABA54133.1| polyprotein [Citrus sudden death-associated virus] 1538 0.0
ref|NP_115454.1| polyprotein [Maize rayado fino virus] gi|819647... 1501 0.0
ref|YP_004464920.1| polyprotein [Switchgrass mosaic virus] gi|33... 1491 0.0
gb|ACV53023.1| polyprotein [Blackberry virus S] 1488 0.0
ref|YP_002756536.1| putative 230 kDa polyprotein [Grapevine Syra... 1458 0.0
gb|ACV83739.1| replicase-associated polyprotein [Grapevine virus Q] 1457 0.0
gb|AFV34757.1| polyprotein [Grapevine Syrah virus 1] 1456 0.0
ref|YP_004300278.1| replication-associated polyprotein [Fig flec... 1362 0.0
gb|AAB92649.1| replicase protein [Turnip yellow mosaic virus] 1306 0.0
sp|P28477.1|POLR_TYMVC RecName: Full=RNA replicase polyprotein g... 1303 0.0
gb|AFC95826.1| RNA polymerase [Watercress white vein virus] 1293 0.0
ref|NP_542612.1| replicase [Grapevine fleck virus] gi|81956065|s... 1290 0.0
ref|NP_067737.1| replication protein [Chayote mosaic virus] gi|6... 1246 0.0
ref|NP_044328.1| replicase [Kennedya yellow mosaic virus] gi|548... 1001 0.0
ref|YP_007517180.1| viral replication protein [Andean potato lat... 993 0.0
ref|YP_002048673.1| replicase-associated protein RP [Diascia yel... 991 0.0
>ref|YP_224218.1| replicase-associated polyprotein [Citrus sudden death-associated
virus] gi|59609791|gb|AAW88343.1| replicase-associated
polyprotein [Citrus sudden death-associated virus]
Length = 2188
Score = 1558 bits (4035), Expect = 0.0
Identities = 911/2017 (45%), Positives = 1166/2017 (57%), Gaps = 68/2017 (3%)
Frame = -3
Query: 6050 FRTKTTVNPPNVPRPIKPLPSPRL---FGGSPLGNLFESLSNTIHRDTVTSPLVEAVADP 5880
+R T N R L +P + G L + SL+ T HRDT+ +PL+EA+A+P
Sbjct: 59 YRPLTFANHLRYDRSASSLKTPPVKLPLTGGTLADAILSLAPTTHRDTIATPLMEALAEP 118
Query: 5879 LRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQS 5700
R SL YP+ + +L FL+ GI +G G K HPHP HK IE +L +VWP+ S
Sbjct: 119 YRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHPVHKTIETNLLTNVWPHYATTPS 178
Query: 5699 SVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTP 5520
V+FMKPSKF KL+ K NF +L NYR+T +DTTRYPS+S LP T FMHDALMYY+P
Sbjct: 179 GVMFMKPSKFEKLKIKQPNFSKLYNYRITAKDTTRYPSTSPDLPTEDTCFMHDALMYYSP 238
Query: 5519 GDIADLFLSAPHITQLYATLVVPPESSFTETSFFPELYNFHFHDSDLVYELEGNPSHHYI 5340
G I DLFLS P + +LYA+LVVPPES FT S FP+LY + L+YELE NP+H+YI
Sbjct: 239 GQICDLFLSRPSLQKLYASLVVPPESDFTTISLFPDLYRYRIEKDQLIYELEQNPAHNYI 298
Query: 5339 QPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFL 5160
QP+SA+DWL+T+TIRC DLTL+IS L+S GPVH LLIQRG P H E + F P L
Sbjct: 299 QPRSAIDWLKTTTIRCQDLTLTISRLDSWGPVHSLLIQRGKPPIHLEEDSISFRAPKAVL 358
Query: 5159 LPAPTSLSQNTRDRLVPLAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAW 4980
LP P SLSQ+ RDRLVP Y +L YV AVRTLR TDPAGFVRTQ +KPE++WVT+ AW
Sbjct: 359 LPEPASLSQSVRDRLVPADVYQALFIYVRAVRTLRVTDPAGFVRTQISKPEYSWVTSSAW 418
Query: 4979 DSLQNFALLTCNQRPAVSYLTFASSFARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAH 4800
D+L +FAL T RP +Y F S+ ARV HW S A+ A
Sbjct: 419 DNLAHFALATAPHRPHTTYFLFNSTAARVAHWFRTHTLAPL----------SGATAAAAS 468
Query: 4799 YCSTRQVDSLILFGKQVVRPSCPLNSPFNLHQYFSRTAQLPPSL--SASLPRFELVTSPR 4626
T + +V S R + PP L P F+L P+
Sbjct: 469 LLMTASWGFRAMISSHLVSLSI-----------CKRWLKAPPHLLWPEKAPWFQLTLRPK 517
Query: 4625 IVTKWS--PCLARFLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXA 4452
+ P L F L L + L+ A K
Sbjct: 518 VTGPLIDLPILRPFRLFPSTCAKLGAKHPALATLLPAAPRPTWPLKVGLALAAVPVCLFL 577
Query: 4451 YRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDD 4272
+R+F+GPD+PQ M D Y+ F+P+PW L + + C R FLP P+S + +
Sbjct: 578 WRKFIGPDSPQDMHDSYHAMFHPQPWGLTLTRKAICCDRAPFLPIPVVPSSDFKAPPTPA 637
Query: 4271 DIFLVNAVSIDLQTEV------PEHIRSLALTKPIHFEPSE-HILDPSPILVPTKVA--- 4122
L + ++ +V P+ S P P P T A
Sbjct: 638 TPLLTSIPIKGVEPQVSGEGVPPQSASSTGPASDSRRAPQPASSTGPDPPTQNTSAAPQP 697
Query: 4121 ---AKVT-----ELITPEAP----PTEPHSASQPAPLESRDAVSAETSIPAEPLISKSSH 3978
+KVT E + P P P + S++ PA + RD A ++ P P + S
Sbjct: 698 PIESKVTFAQPIESVAPVVPGAGEPPQSASSTGPASVSRRDPQVASSTTPDAPTLDVSVT 757
Query: 3977 PT--------LSSXXXXXXXXXXXPISEAPI-STXXXXXXXXXXXXXXPTSV-------- 3849
P L + P+ AP+ ST S
Sbjct: 758 PPKTIYPIDHLQNDFGPCRCSVCEPLQPAPVPSTPLTVSDHKEAQDAEALSSALQALGLA 817
Query: 3848 --------QTIVVPSSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEVSTFAQLYPDDY 3693
Q + V SS + + S + S L D S G ++ L+P Y
Sbjct: 818 PTPPAPQSQNLTVESSGAMHASSWDQLSSPSSDWDPSPLARDSSASGPPGMYSDLFPAPY 877
Query: 3692 VLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNSQI 3513
+ G +F R R +G ++ P+P M CLL ++ + LW TLC PDSLL I
Sbjct: 878 LPGTGQFIFRSRANGRANIPYPDMDCLLLSIEQATRLPKEALWDTLCATCPDSLLDPDTI 937
Query: 3512 TTCGLSTDHLTALSHFYQFKALVTSDQEPTPH---PYGVDSAPTTIRFNHTTGSPGHFFI 3342
GLSTDH L+H Y + + T H G+ A ++ +HT G+PGHF +
Sbjct: 938 RRVGLSTDHFAILAHHYSLRC-----RFHTAHGVIELGMADATSSFDIDHTAGNPGHFSL 992
Query: 3341 TSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKN 3162
A P F ++G LLP ++VH Y KRAKNL SNMKN
Sbjct: 993 RQS--ATP----RLNGGIAQDLAVAALRFNIDGTLLPIRSVHVYSTWPKRAKNLSSNMKN 1046
Query: 3161 GFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRLLLTA 2982
GFDG+MA + P N ++EK + D LDIA RSV+LIHIAGFPGCGKS+PI RLL T
Sbjct: 1047 GFDGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLIHIAGFPGCGKSFPISRLLRT- 1105
Query: 2981 PRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYL 2802
P RNF+++VPT ELR EWK L WRIGTWE LV+DEIYKMPRGY+
Sbjct: 1106 PTFRNFKVAVPTVELRAEWKTITGLPASEAWRIGTWESSLLKSARVLVIDEIYKMPRGYI 1165
Query: 2801 DLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKL 2622
DLAI DP +EMVI LGDPLQGEYHSTHP S+N +L SE HL YLDFYC W+ R P+
Sbjct: 1166 DLAIHSDPTIEMVIALGDPLQGEYHSTHPSSTNSRLLSEPQHLSMYLDFYCLWSHRVPQN 1225
Query: 2621 IANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSS 2442
+A FF V TTS++PGFCR LP N IL NS +A TL + A TI++SQGSTY +
Sbjct: 1226 VAAFFHVKTTSKQPGFCRYQRELP-NSRILANSQNAGHTLQQCGYAAVTIASSQGSTYEN 1284
Query: 2441 PVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQGSNSP 2262
IHLDR+SS LS + ++VALTRS GV+F+GD + L P S ++FS+ F G
Sbjct: 1285 AACIHLDRNSSLLSPAHSMVALTRSKVGVIFTGDPAQLSNAPSSNRMFSEF--FSGRTR- 1341
Query: 2261 DDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGACPTEVKHSSTVRAFNPHTIRGSTVRD 2088
P+ F + T+++ PLK+R +L GA +P++ + +R
Sbjct: 1342 ----PLHDWFHNEFPKATVLTEPLKTRGPRLTGAA-------------SPYS-KAVPIRQ 1383
Query: 2087 PSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAET 1908
S +PA L PDF+GD + SA IV G G + P+VS HF+ ET
Sbjct: 1384 AS------------TPA--------LKPDFQGDVIISAPIVLGSGELNAPQVSSHFLPET 1423
Query: 1907 RLPYHSDMPSAMPSQCS---LSPPTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIF 1737
R P H D+PSA+P + + PT S P EPVYPGE FE LA+ FLPAHDP REI +
Sbjct: 1424 RRPLHWDIPSAIPESATRPDSTEPTTSHP--EPVYPGETFENLAAHFLPAHDPTDREIYW 1481
Query: 1736 KGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVISPK 1557
+G+ S QFP++++ F L QP +L+AA H ++DPTLLPASI KRLRFR + PY I+PK
Sbjct: 1482 QGQLSNQFPHMDKEFHLAAQPMSLLAAVHQEKQDPTLLPASIQKRLRFRPSDKPYQITPK 1541
Query: 1556 DQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANANRSDP 1377
D++LG+LLF LC+AY R P E FD LFA+CINLNEFAQLSSKTQ TIM NA RSDP
Sbjct: 1542 DEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINLNEFAQLSSKTQATIMGNARRSDP 1601
Query: 1376 DWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPA 1197
DWRWSAVRIFSK+QHK NE SIF SWKACQTLALMHDAVVL+LGPVKKYQR+FD RDRP
Sbjct: 1602 DWRWSAVRIFSKTQHKVNEGSIFRSWKACQTLALMHDAVVLILGPVKKYQRVFDQRDRPR 1661
Query: 1196 HIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLI 1017
H+Y+HA +TP QMS+WC++HL+ +ANDYTAFDQSQHGEAVVLE KKM RLSIP+ LI
Sbjct: 1662 HLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQSQHGEAVVLERKKMERLSIPQALI 1721
Query: 1016 QLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLI 837
LH +LKT+V+TQFGPLTCMRLTGEPGTYDDN+DYNLAV++ +Y+ A+ P MVSGDDSL+
Sbjct: 1722 DLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDYNLAVVNCEYMAANTPTMVSGDDSLL 1781
Query: 836 DRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGS 657
DR+P P W+ + P+L LRFK E RY FCGY G VRSP+ LFAK +A+DDGS
Sbjct: 1782 DREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHVGCVRSPVALFAKLAIAVDDGS 1841
Query: 656 LDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFCRKASREQKLVLKIGEVPD 477
+ DK+ASYL+EF++GHSLG +W +P+E V +Q+A FDFFCR+A R KL L +GEVP+
Sbjct: 1842 ISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFDFFCRRAPRHLKLSLMLGEVPE 1901
Query: 476 TIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR--PFDTEESLQFEGVLQH----A 315
+II+ I SS + + +Y LSS+AR +L+ S+ R P D + +L +LQH
Sbjct: 1902 SIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSRSMPDDPDTTLLQGELLQHFQVPF 1961
Query: 314 VSIATPPPRLTGGSLSSMSWFDRIASQAKKSPTSNSQ 204
+ T P LTGGS + + + ++ S S++Q
Sbjct: 1962 MQSDTLLP-LTGGSSAPILTPEAFSTSLAFSMASDAQ 1997
>gb|ADD13602.1| replicase-associated polyprotein [Oat blue dwarf virus]
Length = 2067
Score = 1554 bits (4023), Expect = 0.0
Identities = 903/1930 (46%), Positives = 1136/1930 (58%), Gaps = 28/1930 (1%)
Frame = -3
Query: 5996 LPSPRLFG---GSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTS 5826
LP+P F G L ++ E+LS+TIHRDT+ +PL+E +A P RDSL +P+AV S
Sbjct: 10 LPTPTSFATVTGGGLKDVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASALP 69
Query: 5825 FLSKRGINISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDS 5646
FL + GI ++G+G K HPHP HK IE ++L VWP+ + SSVLFMKPSKF KL++ ++
Sbjct: 70 FLQECGITVAGHGFKAHPHPVHKTIETHLLHKVWPHYAQVPSSVLFMKPSKFAKLQRGNA 129
Query: 5645 NFHELINYRLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYA 5466
NF L NYRLT +DT RYP++ST+LP T FMHDALMYYTP I DLFLS P + +LYA
Sbjct: 130 NFSALHNYRLTAKDTPRYPNTSTSLPDTETAFMHDALMYYTPAQIVDLFLSCPKLEKLYA 189
Query: 5465 TLVVPPESSFTETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSD 5286
+LVVPPESSFT S P+LY F F L+YELEGNP+H+Y QP+SALDWLRT+TIR
Sbjct: 190 SLVVPPESSFTSISLHPDLYRFRFDGDRLIYELEGNPAHNYTQPRSALDWLRTTTIRGPG 249
Query: 5285 LTLSISILESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPL 5106
++L++S L+S GP H LLIQRG+ P H E+ + F P +P P+SL Q+ R RLVP
Sbjct: 250 VSLTVSRLDSWGPCHSLLIQRGIPPMHAEHDSISFRGPRAVAIPEPSSLHQDLRHRLVPE 309
Query: 5105 AAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVS 4926
Y++L YV AVRTLR TDPAGFVRTQ +K E+AWVT+ AWD+L +FALLT RP S
Sbjct: 310 DVYNALFLYVRAVRTLRVTDPAGFVRTQCSKSEYAWVTSSAWDNLAHFALLTAPHRPRTS 369
Query: 4925 YLTFASSFARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQVV 4746
+ F+S+F R++HW S + S + L L + ++
Sbjct: 370 FYLFSSTFQRLEHWVRHHTFLLAGLTTAFALPPSAWLANLVARTSASHIQGLALARRWLI 429
Query: 4745 RPSCPLN--SPFNLHQYFSRTAQLPPSLSASLPRFELVTS--PRIVTKWSPCLARFLLST 4578
P SP + R + P L S FE S P++ ++ P LAR L
Sbjct: 430 TPPHLFRPPSPPSFALLLQRNSTGPILLRGSRLEFEAFPSLAPQLARRF-PFLARLLPQK 488
Query: 4577 PFFRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMFDQYN 4398
P + L A P + A R F GPD PQAM D+Y+
Sbjct: 489 PINPWIVASLAV-------AVAIPAAS-------------LAVRWFFGPDTPQAMHDRYH 528
Query: 4397 GYFNPKPWKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQTEVPE 4218
F+P+ W+L + +GP C R F P P P S T DS
Sbjct: 529 TMFHPREWRLTLPRGPISCGRSSFSPL-PHPPSPTPAPDS-------------------- 567
Query: 4217 HIRSLALTKPIHFEPSEHILDPSPILVPTKVA-AKVTE----LITPEAPPTE-PHSASQP 4056
R+ L P PS H P+ + P A A TE +I EA P P A +P
Sbjct: 568 --RAGPLQPPSAL-PSTHEPAPADLESPAPQAHAPQTEPPSPVIEQEARPDPFPAPAPRP 624
Query: 4055 APLESRDAVS-AETSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXXX 3879
AP S A S A T EP +S S + AP S
Sbjct: 625 APTPSASAPSPAPTPSAPEPPSPTASEQAAS-------------LIPAPSSAL------- 664
Query: 3878 XXXXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEVSTFAQLYPD 3699
+V PS + + P D + S L DPS G V + L+P
Sbjct: 665 ------------VVEPSGVVSASSWGATNQPADQVDD-SPLARDPSASGPVRFYRDLFPA 711
Query: 3698 DYVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNS 3519
+Y F R R G S P+PAM CLL A ++ LW L PDS L
Sbjct: 712 NYAGDSGTFDFRARASGRSPTPYPAMDCLLVATEQATRISREALWDCLTATCPDSFLDPK 771
Query: 3518 QITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGS---PGHF 3348
I GLSTDH L+H + A S G+ A +T NHT GS PGHF
Sbjct: 772 SIAQHGLSTDHFVILAHRFSLCANFHSAAHVIQ--LGMADATSTFMINHTAGSAGLPGHF 829
Query: 3347 FIT--SEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLIS 3174
+ +P A F ++G+LLP ++VH YR+ KRAKNL+S
Sbjct: 830 SLRLGDQPRA-------LNGGLAQDLAVAALRFNISGDLLPTRSVHTYRSWPKRAKNLVS 882
Query: 3173 NMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRL 2994
NMKNGFDGVMA+++P P+ A+EK V DG+LDIA+ RSV+LIHIAGFPGCGK++PI +L
Sbjct: 883 NMKNGFDGVMASINPIRPSDAREKIVALDGLLDIAQPRSVRLIHIAGFPGCGKTHPITKL 942
Query: 2993 LLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMP 2814
L TA R+F+++VPT ELR EWK M L P WR GTWE LV+DEIYK+P
Sbjct: 943 LHTAA-FRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTWESSLLKSARILVIDEIYKLP 1001
Query: 2813 RGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRR 2634
RGYLDLAI D +E VI LGDPLQGEYHSTHP SSN +L E++HL PYLD+YC W+ R
Sbjct: 1002 RGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRLIPEVSHLAPYLDYYCLWSYR 1061
Query: 2633 CPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGS 2454
P+ +A FF V + + GF R P +LTNS ++ LT+T+ A TI++SQGS
Sbjct: 1062 VPQDVATFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNSMLTMTQCGYSAVTIASSQGS 1121
Query: 2453 TYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQG 2274
TYS IHLDR+SS LS S +LVALTRS GV FSGD ++L GP+S +FS FQG
Sbjct: 1122 TYSGATHIHLDRNSSLLSPSNSLVALTRSRTGVFFSGDPALLNGGPNSNLMFSAF--FQG 1179
Query: 2273 SNSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGA-CPTEVKHS--STVRAFNPHTI 2109
+ I+ F TL+ +PL+ R +L GA P E H + + P
Sbjct: 1180 KSRH-----IRDWFPTLFPTATLLLSPLRQRHNRLTGALAPVEPSHLLLPDLPSLLPLPA 1234
Query: 2108 RGSTVRDPSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVS 1929
G R + FA V+ P + D + A I GDG + PR+
Sbjct: 1235 SGPYSRAFPVRSRFAAAVK---------------PFDRSDVLSWAPIAVGDGETNAPRID 1279
Query: 1928 PHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAP---VFEPVYPGEDFETLASTFLPAHDP 1758
F+ ETR P H D+PS P + PP+ AP FEPVYPGE FE L + FLPAHDP
Sbjct: 1280 TSFLPETRRPLHFDLPSFRPQ--APPPPSDPAPSGTAFEPVYPGETFENLVAHFLPAHDP 1337
Query: 1757 HLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNAT 1578
REI ++G+ S QFP++++ + L QP TL+A H + DPTLL ASI KRLRFR +A+
Sbjct: 1338 TDREIHWRGQLSNQFPHIDKEYHLAAQPMTLLAPIHDSKHDPTLLAASIQKRLRFRPSAS 1397
Query: 1577 PYVISPKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMA 1398
PY I+P+D+LLG+LL+ SLC+AY R P+S PFDEALF +CI+LNEFAQL+SKTQ IM
Sbjct: 1398 PYRITPRDELLGQLLYESLCRAYHRSPTSTHPFDEALFVECIDLNEFAQLTSKTQAVIMG 1457
Query: 1397 NANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLF 1218
NA RSDPDWRWSAVRIFSK+QHK NE SIFG+WKACQTLALMHDAVVLLLGPVKKYQR+F
Sbjct: 1458 NARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAVVLLLGPVKKYQRVF 1517
Query: 1217 DNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQHGEAVVLEIKKMRRL 1038
D RDRPAH+Y+HA TP MS WC+ HL+P +ANDYTAFDQSQHGEAVVLE KKM RL
Sbjct: 1518 DARDRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFDQSQHGEAVVLERKKMERL 1577
Query: 1037 SIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMV 858
SIP+ LI LH YLKT+V TQFGPLTCMRLTGEPGTYDDNTDYNLAVI+ +Y A +P MV
Sbjct: 1578 SIPDHLISLHVYLKTHVETQFGPLTCMRLTGEPGTYDDNTDYNLAVINLEYAAAHVPTMV 1637
Query: 857 SGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSL 678
SGDDSL+D +P P W+ I P+L LRFK E Y FCGY G VRSPI LFAK
Sbjct: 1638 SGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIALFAKLA 1697
Query: 677 MALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFCRKASREQKLVL 498
+A+DD S+ DKLA+YL EF+VGHSLG +W+ +P+ V +Q+A FDFFCR+A R+ KL L
Sbjct: 1698 IAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRDLKLAL 1757
Query: 497 KIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPFDTEESL-QFEGVLQ 321
+GEVP+TII LS ++ +Y+ L S R +L S+ +R + ++ +G L
Sbjct: 1758 HLGEVPETIIQR-LSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSLPEDPAVSSLQGELL 1816
Query: 320 HAVSIATPPP 291
H P P
Sbjct: 1817 HTFHAPMPSP 1826
>ref|NP_044447.1| replicase-associated polyprotein [Oat blue dwarf virus]
gi|1843580|gb|AAC57874.1| replicase-associated
polyprotein [oat blue dwarf virus]
Length = 2066
Score = 1551 bits (4015), Expect = 0.0
Identities = 896/1939 (46%), Positives = 1136/1939 (58%), Gaps = 32/1939 (1%)
Frame = -3
Query: 5996 LPSPRLFG---GSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTS 5826
LP+P F G L ++ E+LS+TIHRDT+ +PL+E +A P RDSL +P+AV S
Sbjct: 10 LPTPTSFATITGGGLKDVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASALP 69
Query: 5825 FLSKRGINISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDS 5646
FL + GI ++G+G K HPHP HK IE ++L VWP+ + SSVLFMKPSKF KL++ ++
Sbjct: 70 FLQECGITVAGHGFKAHPHPVHKTIETHLLHKVWPHYAQVPSSVLFMKPSKFAKLQRGNA 129
Query: 5645 NFHELINYRLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYA 5466
NF L NYRLT +DT RYP++ST+LP T FMHDALMYYTP I DLFLS P + +LYA
Sbjct: 130 NFSALHNYRLTAKDTPRYPNTSTSLPDTETAFMHDALMYYTPAQIVDLFLSCPKLEKLYA 189
Query: 5465 TLVVPPESSFTETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSD 5286
+LVVPPESSFT S P+LY F F L+YELEGNP+H+Y QP+SALDWLRT+TIR
Sbjct: 190 SLVVPPESSFTSISLHPDLYRFRFDGDRLIYELEGNPAHNYTQPRSALDWLRTTTIRGPG 249
Query: 5285 LTLSISILESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPL 5106
++L++S L+S GP H LLIQRG+ P H E+ + F P +P P+SL Q+ R RLVP
Sbjct: 250 VSLTVSRLDSWGPCHSLLIQRGIPPMHAEHDSISFRGPRAVAIPEPSSLHQDLRHRLVPE 309
Query: 5105 AAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVS 4926
Y++L YV AVRTLR TDPAGFVRTQ +KPE+AWVT+ AWD+L +FALLT RP S
Sbjct: 310 DVYNALFLYVRAVRTLRVTDPAGFVRTQCSKPEYAWVTSSAWDNLAHFALLTAPHRPRTS 369
Query: 4925 YLTFASSFARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQVV 4746
+ F+S+F R++HW S + S + L L + ++
Sbjct: 370 FYLFSSTFQRLEHWVRHHTFLLAGLTTAFALPPSAWLANLVARASASHIQGLALARRWLI 429
Query: 4745 RPSCPLNSPF--NLHQYFSRTAQLPPSLSASLPRFELVTS--PRIVTKWSPCLARFLLST 4578
P P + R + P L S FE S P++ ++ P LAR L
Sbjct: 430 TPPHLFRPPPPPSFALLLQRNSTGPVLLRGSRLEFEAFPSLAPQLARRF-PFLARLLPQK 488
Query: 4577 PFFRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMFDQYN 4398
P + L A P + A R F GPD PQAM D+Y+
Sbjct: 489 PIDPWVVASLAV-------AVAIPAAS-------------LAVRWFFGPDTPQAMHDRYH 528
Query: 4397 GYFNPKPWKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQTEVPE 4218
F+P+ W+L + +GP C R F P P P S T DS + + P
Sbjct: 529 TMFHPREWRLTLPRGPISCGRSSFSPL-PHPPSPTPAPDSRAEPLQPPSAPPSTHEPAPA 587
Query: 4217 HIRSLALTKPIHF---EPSEHILD----PSPILVPTKVAAKVTELITPEAPPTEPHSASQ 4059
+ A P H EP +++ P+P+ P ++A P PT P +
Sbjct: 588 DLEPQA--PPAHAPQTEPPSPVIEQEARPNPLPAPAPLSAPTPSASAPSLAPT-PSAPEP 644
Query: 4058 PAPLESRDAVSAETSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXXX 3879
P+P S A S IPA
Sbjct: 645 PSPTASEQAASL---IPAP----------------------------------------- 660
Query: 3878 XXXXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEVSTFAQLYPD 3699
S +V PS + + P D + S L DPS G V + L+P
Sbjct: 661 --------SSALVVEPSGVVSASSWGATNQPADQVDD-SPLARDPSASGPVRFYRDLFPA 711
Query: 3698 DYVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNS 3519
+Y F R R G S P+PAM CLL A ++ LW L PDS L
Sbjct: 712 NYAGDSGTFDFRARASGRSPTPYPAMDCLLVATEQATRISREALWDCLTATCPDSFLDPK 771
Query: 3518 QITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGS---PGHF 3348
I GLSTDH L+H + A S + G+ A + NHT GS PGHF
Sbjct: 772 SIAQHGLSTDHFVILAHRFSLCANFHSAEHVIQ--LGMADATSIFMINHTAGSAGLPGHF 829
Query: 3347 FIT--SEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLIS 3174
+ +P A F ++G+LLP ++VH YR+ KRAKNL+S
Sbjct: 830 SLRLGDQPRA-------LNGGLAQDLAVAALRFNISGDLLPTRSVHTYRSWPKRAKNLVS 882
Query: 3173 NMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRL 2994
NMKNGFDGVMA+++P P+ A+EK V DG+LDIA+ RSV+LIHIAGFPGCGK++PI +L
Sbjct: 883 NMKNGFDGVMASINPIRPSDAREKIVALDGLLDIARPRSVRLIHIAGFPGCGKTHPITKL 942
Query: 2993 LLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMP 2814
L TA R+F+++VPT ELR EWK M L P WR GTWE LV+DEIYK+P
Sbjct: 943 LHTAA-FRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTWESSLLKSARILVIDEIYKLP 1001
Query: 2813 RGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRR 2634
RGYLDLAI D +E VI LGDPLQGEYHSTHP SSN +L E++HL PYLD+YC W+ R
Sbjct: 1002 RGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRLIPEVSHLAPYLDYYCLWSYR 1061
Query: 2633 CPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGS 2454
P+ +A FF V + + GF R P +LTNS ++ LT+T+ A TI++SQGS
Sbjct: 1062 VPQDVAAFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNSMLTMTQCGYSAVTIASSQGS 1121
Query: 2453 TYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQG 2274
TYS IHLDR+SS LS S +LVALTRS GV FSGD ++L GP+S +FS FQG
Sbjct: 1122 TYSGATHIHLDRNSSLLSPSNSLVALTRSRTGVFFSGDPALLNGGPNSNLMFSAF--FQG 1179
Query: 2273 SNSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGA-CPTEVKHS--STVRAFNPHTI 2109
+ I+ F TL+ +PL+ R +L GA P + H + + P
Sbjct: 1180 KSRH-----IRAWFPTLFPTATLLFSPLRQRHNRLTGALAPAQPSHLLLPDLPSLPPLPA 1234
Query: 2108 RGSTVRDPSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVS 1929
G R + FA V+ P + D + A I GDG + PR+
Sbjct: 1235 SGPYSRSFPVRSRFAAAVK---------------PSDRSDVLSWAPIAVGDGETNAPRID 1279
Query: 1928 PHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAP---VFEPVYPGEDFETLASTFLPAHDP 1758
F+ ETR P H D+PS P + PP+ AP FEPVYPGE FE L + FLPAHDP
Sbjct: 1280 TSFLPETRRPLHFDLPSFRPQ--APPPPSDPAPSGTAFEPVYPGETFENLVAHFLPAHDP 1337
Query: 1757 HLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNAT 1578
REI ++ + S QFP++++ + L QP TL+A H + DPTLL ASI KRLRFR +A+
Sbjct: 1338 TDREIHWRRQLSNQFPHVDKEYHLAAQPMTLLAPIHDSKHDPTLLAASIQKRLRFRPSAS 1397
Query: 1577 PYVISPKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMA 1398
PY ISP+D+LLG+LL+ SLC+AY R P++ PFDEALF +CI+LNEFAQL+SKTQ IM
Sbjct: 1398 PYRISPRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVECIDLNEFAQLTSKTQAVIMG 1457
Query: 1397 NANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLF 1218
NA RSDPDWRWSAVRIFSK+QHK NE SIFG+WKACQTLALMHDAVVLLLGPVKKYQR+F
Sbjct: 1458 NARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAVVLLLGPVKKYQRVF 1517
Query: 1217 DNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQHGEAVVLEIKKMRRL 1038
D RDRPAH+Y+HA TP MS WC+ HL+P +ANDYTAFDQSQHGEAVVLE KKM RL
Sbjct: 1518 DARDRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFDQSQHGEAVVLERKKMERL 1577
Query: 1037 SIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMV 858
SIP+ LI LH +LKT+V TQFGPLTCMRLTGEPGTYDDNTDYNLAVI+ +Y A +P MV
Sbjct: 1578 SIPDHLISLHVHLKTHVETQFGPLTCMRLTGEPGTYDDNTDYNLAVINLEYAAAHVPTMV 1637
Query: 857 SGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSL 678
SGDDSL+D +P P W+ I P+L LRFK E Y FCGY G VRSPI LFAK
Sbjct: 1638 SGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIALFAKLA 1697
Query: 677 MALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFCRKASREQKLVL 498
+A+DD S+ DKLA+YL EF+VGHSLG +W+ +P+ V +Q+A FDFFCR+A R+ KL L
Sbjct: 1698 IAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRDLKLAL 1757
Query: 497 KIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPFDTE---ESLQFEGV 327
+GEVP+TII LS ++ +Y+ L S R +L S+ +R + SLQ E +
Sbjct: 1758 HLGEVPETIIQR-LSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSLPEDPAVSSLQGE-L 1815
Query: 326 LQ--HAVSIATPPPRLTGG 276
LQ HA + P L GG
Sbjct: 1816 LQTFHAPMPSLPSLPLFGG 1834
>ref|YP_003475889.1| replicase-associated polyprotein [Olive latent virus 3]
gi|289467899|gb|ACN94861.2| replicase-associated
polyprotein [Olive latent virus 3]
Length = 2000
Score = 1545 bits (3999), Expect = 0.0
Identities = 878/1945 (45%), Positives = 1144/1945 (58%), Gaps = 53/1945 (2%)
Frame = -3
Query: 5999 PLPSPRLFGGSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFL 5820
P+ P GS L +L + L+ T+HRDT+ +PL+E ++ PLRDSL YP++V PSL + L
Sbjct: 117 PISPPIRLTGSGLKDLVDFLNPTVHRDTIAAPLLETISQPLRDSLRTYPWSVPPSLQTHL 176
Query: 5819 SKRGINISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNF 5640
GIN +G K HPHPAHK IE ++L + W +L S++LFMKPSKF+KL ++ NF
Sbjct: 177 QSLGINAHNFGYKPHPHPAHKVIETHLLHEHWRHLATQPSAILFMKPSKFQKLHNQNDNF 236
Query: 5639 HELINYRLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATL 5460
EL NYRLT +D+TRYP +S ++P ++F+HDALMY+TP I DLF +P + + +A+L
Sbjct: 237 TELHNYRLTSKDSTRYPETSRSIPNLPSIFLHDALMYFTPSQILDLFERSPALEKCFASL 296
Query: 5459 VVPPESSFTETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLT 5280
V PPES+FT+ SF+PELY F + YELEGNP+ Y QPKSA++WL+ +TI+ + +
Sbjct: 297 VCPPESNFTDISFYPELYRFRAVGDSITYELEGNPASSYTQPKSAIEWLKITTIKGPNFS 356
Query: 5279 LSISILESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPLAA 5100
LSI+ILES GP H LLIQRGL P H+E++T+ F TP+ LLPAP+ L Q+ R RLVP
Sbjct: 357 LSITILESWGPCHSLLIQRGLLPLHQEHSTQAFKTPEAILLPAPSHLQQDLRHRLVPTRV 416
Query: 5099 YHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYL 4920
Y S+ YV AVRTLR TDP+G+VRTQS+KPE++WVT AWD+L NFALLTC RP Y
Sbjct: 417 YESIFVYVRAVRTLRVTDPSGYVRTQSSKPEYSWVTTAAWDNLANFALLTCAHRPRARYY 476
Query: 4919 TFASSFARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQVVRP 4740
+ S+ R+ W +S +A ++DSL L + V++P
Sbjct: 477 LYWSTLDRLMGWIRAHKLALLTASTPLASLGLASSALLACRPFWMRLDSLQLLNRWVIKP 536
Query: 4739 SCPLNSPFNLHQYFSRTAQLPPSLSASLPRFELVTSPRIVTKWSPCLARFLLSTPFFRTL 4560
S P N PF L + F A L + LPR RI+ ++ L L PF R L
Sbjct: 537 SFPRNLPFLLPKAFQPKASL--FKAEFLPRH---APSRILPEFFDAL---LKKAPFLRPL 588
Query: 4559 TTQLNFLS---KKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMFDQYNGYF 4389
+ S C P + RRF+GP++PQA+ D+Y YF
Sbjct: 589 FSDAPIPSWAWALCATGVAIP-------------IIALSIRRFLGPNSPQALLDEYQSYF 635
Query: 4388 NPKPWKLRIAQGPTKCSRGQFLPFC-PRPNSLTQDSDSDDDIFLVNAVSIDLQTEVPEHI 4212
+PKPW+L + QGP + F P C P P+S + S
Sbjct: 636 HPKPWQLILEQGPIFANPEPFSPHCQPIPSSGPDSAPS---------------------- 673
Query: 4211 RSLALTKPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHSASQPAPLESRDA 4032
S T P++ ++ ILVPT A + P PP+ S+P+P
Sbjct: 674 -STLGTPPMYPSSPPAPVEEKTILVPTVRA------LPPAPPPSSVPPPSKPSPAAPAPV 726
Query: 4031 VSAETSIPAEPLIS----KSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXXXXXXXX 3864
P P +S ++ P + IS P
Sbjct: 727 TPPSLPTPVIPPLSTPTPETRVPEVGKSGIVASDLPPTEISPNPTLARCRPNFLGLCAPH 786
Query: 3863 XPT--SVQTIVVPSSL----TGSLDTVNVAVPDDSTPERSALILDPSGFGEVSTFAQLYP 3702
+ S PS L +GSL +N + + + L DPSG G V+ F +L+P
Sbjct: 787 PNSNPSHPEPSAPSPLITDPSGSLTAINPTL-EPFEFNHALLGADPSGQGPVAQFNELFP 845
Query: 3701 DD-YVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSLLQ 3525
++ G EF R R SSAP+PAM CLL A+ T + LW+ LC +LPDS L
Sbjct: 846 STLWLQGTGEFLTRSRVQAPSSAPYPAMDCLLHAIHTATRIPKPTLWAGLCSNLPDSFLD 905
Query: 3524 NSQITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTT---GSPG 3354
I GLSTDH L+ + + T GV A T R HT +PG
Sbjct: 906 PQLIAKHGLSTDHFAVLARLFSLRC--TFQSRSGTQTMGVADATHTFRIRHTPPTEDAPG 963
Query: 3353 HFFITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLIS 3174
HF E +FR NG LLPF+ VH Y +NV RAKNLIS
Sbjct: 964 HFEYMEEI------PESLTGAFAQDLAHFALSFRFNGYLLPFKHVHTYTSNVSRAKNLIS 1017
Query: 3173 NMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRL 2994
NMKNGFDGVMA+ DP HP +E+F++ D LDIA R +LIHI+GF GCGK+YPI +L
Sbjct: 1018 NMKNGFDGVMASADPLHPGQTRERFLSMDNQLDIAVPRETRLIHISGFAGCGKTYPITQL 1077
Query: 2993 LLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMP 2814
L P R FR++VPT ELR EWK + LEP + WRIGTWE LV+DE+YKMP
Sbjct: 1078 L-KKPVFRQFRVAVPTTELRSEWKDLLTLEPADRWRIGTWESSLLKSSRVLVIDEVYKMP 1136
Query: 2813 RGYLDL--AILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWT 2640
RGYLDL L+ P ++I P QGEY+STHP SSN +++SEI HL+PY+DFYC W+
Sbjct: 1137 RGYLDLRPTPLIRPIQFVIIPWRSPSQGEYNSTHPHSSNLRITSEIIHLQPYIDFYCFWS 1196
Query: 2639 RRCPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQ 2460
R PK +A VPTTS + GF R +N +P +LT S S+ TL + + TI++SQ
Sbjct: 1197 YRIPKNVAACLKVPTTSNKTGFIRRLNSIPNANKVLTCSQSSMKTLNQCGFSSVTIASSQ 1256
Query: 2459 GSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQF 2280
GST IHLDR+S LSNS +LVA+TRS G++F+GD +L S LFS L Q
Sbjct: 1257 GSTLQEAACIHLDRNSRNLSNSHSLVAITRSKSGIIFTGDFHLLDGTTSSNYLFSCLAQG 1316
Query: 2279 QGSNSPDDRYPIQTHFIEQLRGVTLISTPLKSRK--LVGAC--------PTEVKHSSTVR 2130
+ + ++ F + + P++SR+ LVG+ PT ++ S +
Sbjct: 1317 KSVD-------LEMLFPKTFPPCPRLLQPIRSRRTILVGSSEDWAQFYRPTPLEDFSRFQ 1369
Query: 2129 AFN--------PHTIRGST--VRDPSYQ--------PSFAHVVRHTSP-----AVYHPEL 2019
A P+ +GS + PS+ S + TSP V+
Sbjct: 1370 ATPVPETAIPCPNGYQGSPEMIEGPSHANLPFEADLDSIDPLEGETSPYSLGFGVHARTA 1429
Query: 2018 NRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTF 1839
+P+ GD + + IV GDG ++P+VS HF+ ETR P H D PSA+PS SP
Sbjct: 1430 RTTNPEATGDIITQSEIVLGDGELNMPQVSTHFLPETRRPLHFDNPSALPSSTVPSPVDL 1489
Query: 1838 SAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIA 1659
S FEPVYPGE FE +A F+ DP + EII + S QFP L+QPF L QP +L+A
Sbjct: 1490 SRTAFEPVYPGETFENIAGHFMGPRDPEVLEIIHNDQMSNQFPLLDQPFSLAAQPSSLMA 1549
Query: 1658 AQHHGQKDPTLLPASIPKRLRFRRNATPYVISPKDQLLGELLFISLCKAYGRHPSSVEPF 1479
A H+ Q DPTLLPASI KRLRFR + PY I+ +DQ+LG LLF +LC+AY RHP +V PF
Sbjct: 1550 AIHNSQNDPTLLPASIGKRLRFRPSNAPYPITAEDQILGSLLFEALCRAYRRHPEAVVPF 1609
Query: 1478 DEALFADCINLNEFAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSW 1299
+ FA+CINLNE+AQL+SKTQ I++NA RSDPDWR+SAVRIFSK+QHK N+ S FGSW
Sbjct: 1610 NPIAFAECINLNEYAQLTSKTQAVIISNARRSDPDWRYSAVRIFSKTQHKVNDGSFFGSW 1669
Query: 1298 KACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEH 1119
KACQTLALMHDAV+LLLGPVKKYQRLFD+ DRP+HIY+HA HTP MS+WC+++L+ H
Sbjct: 1670 KACQTLALMHDAVILLLGPVKKYQRLFDSEDRPSHIYIHAGHTPQDMSNWCQQNLTDSIH 1729
Query: 1118 VANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEP 939
+ NDYT+FDQSQHGEAVVLE KM RLSIP+ LI LH +LK NV+TQFGPLTCMRLTGEP
Sbjct: 1730 LTNDYTSFDQSQHGEAVVLEQMKMARLSIPQHLIDLHTHLKCNVSTQFGPLTCMRLTGEP 1789
Query: 938 GTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVT 759
GTYDDN+DYNLAVIH QY + S P MVSGDDSL+D +P W I P+L LRFK E+
Sbjct: 1790 GTYDDNSDYNLAVIHLQYAVGSTPCMVSGDDSLLDSKPPIRDEWTGIAPLLALRFKTELD 1849
Query: 758 RYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLI 579
RY LFCGY VG SGAVR P LFAK ++A+DDGS+ K+ASYLTEFS+GHSLG E W L+
Sbjct: 1850 RYSLFCGYFVGSSGAVRCPRALFAKIMIAVDDGSIPLKIASYLTEFSIGHSLGDEFWQLL 1909
Query: 578 PIEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSAR 399
P+EQV +Q+A FDFFCR KL+L++GE P +I+ + + +Y+ LS++AR
Sbjct: 1910 PVEQVVFQSACFDFFCRNCPPAAKLLLRLGEAPQSILEATFGKLKWASNAVYSMLSATAR 1969
Query: 398 KLLLKGSKTYRPFDTEESLQFEGVL 324
LL+K T P ++ E Q +G L
Sbjct: 1970 HLLIKSRLTRPPPESVEVSQLQGQL 1994
>gb|ABA54133.1| polyprotein [Citrus sudden death-associated virus]
Length = 2189
Score = 1538 bits (3983), Expect = 0.0
Identities = 905/2005 (45%), Positives = 1169/2005 (58%), Gaps = 71/2005 (3%)
Frame = -3
Query: 6005 IKPLPSPRLFGGSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTS 5826
+K P G L + SL+ T HRDT+ +PL+EA+A+P R SL YP+ + +L
Sbjct: 77 LKTSPVKLPLTGGTLADAILSLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNLQP 136
Query: 5825 FLSKRGINISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDS 5646
FL+ GI +G G K HPHP HK IE +L +VW + S V+FMKPSKF KL K
Sbjct: 137 FLTSCGITTAGQGFKAHPHPVHKTIETNLLSNVWSHYATTPSGVMFMKPSKFEKLRIKQP 196
Query: 5645 NFHELINYRLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYA 5466
NF +L NYR+T +D+TRYPS+S LP T FMHDALMYY+PG I DLF+S P + +LYA
Sbjct: 197 NFSKLYNYRITAKDSTRYPSTSPDLPTEDTCFMHDALMYYSPGQICDLFISRPSLQKLYA 256
Query: 5465 TLVVPPESSFTETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSD 5286
+LVVPPES FT S FP+LY + LVYELE NP+H+YIQP+SA+DWL+T+TIRC D
Sbjct: 257 SLVVPPESDFTTISLFPDLYRYRIEKDQLVYELEQNPAHNYIQPRSAIDWLKTTTIRCQD 316
Query: 5285 LTLSISILESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPL 5106
LTL+IS L+S GPVH LLIQRG P H E + F TP LLP P SLSQ RDRLVP
Sbjct: 317 LTLTISRLDSWGPVHSLLIQRGRPPIHLEEDSISFRTPKAVLLPEPASLSQGVRDRLVPA 376
Query: 5105 AAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVS 4926
Y +L YV AVRTLR TDPAGFVRTQ +KPE++WVT+ WD+ AL T RP +
Sbjct: 377 DVYQALFIYVRAVRTLRVTDPAGFVRTQISKPEYSWVTSFRWDNFPPLALATAPHRPHTT 436
Query: 4925 YLTFASSFARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQVV 4746
Y F S+ ARV HW S A+ A T L +V
Sbjct: 437 YFLFNSTAARVSHWFRTHTLALL----------SGATAAAASLLMTASWGFRALISSHLV 486
Query: 4745 RPSCPLNSPFNLHQYFSRTAQLPPSL--SASLPRFELVTSPRIVTKWS--PCLARFLLST 4578
S R + PP L P F+L P++ P L F L
Sbjct: 487 SLSI-----------CKRWLRAPPHLLWPEKAPWFQLTLRPKVTGPMIDLPILRPFRLFP 535
Query: 4577 PFFRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMFDQYN 4398
L + L+ A K +R+F+GPD+PQ M D Y+
Sbjct: 536 STCAKLGAKYPALATLLPAAPRPLWPLKVGLALATVPVCLFLWRKFIGPDSPQDMHDSYH 595
Query: 4397 GYFNPKPWKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQTEVPE 4218
F+P+PW L +A+ C R FLP P+S + + L + ++ +VP
Sbjct: 596 AMFHPQPWGLSLARKAICCDRAPFLPIPLVPSSDFKAPPTPATPLLTSIPIKGVEPQVPG 655
Query: 4217 H---IRSLALTKPIHFE-----------PSEHILDPSPI-LVPTKVAAKVT-----ELIT 4098
+S + T P P + D S PTK +KVT E +T
Sbjct: 656 EGVPPQSASSTGPASDSRCAPQPASSTGPDQPAQDMSAAPQAPTK--SKVTFAQPLESVT 713
Query: 4097 PEAP----PTEPHSASQPAPLESRDAVSA----------ETSIPAEPLISKSSHPTLSSX 3960
P P P + S++ PA + RD +A ++S+ P+I H L +
Sbjct: 714 PVVPGAGEPPQSASSTGPASVSRRDPQTASSTVPDAPTLDSSVTPPPIIYPVDH--LQND 771
Query: 3959 XXXXXXXXXXPISEAPISTXXXXXXXXXXXXXXPTSVQTIVV-------PSSLTGSLD-- 3807
P AP+ + + P+ L+ +L
Sbjct: 772 FGPCRCSLCEPPQPAPVPSAPPTVSDHKESQDGEALASALQALGLAPAPPAPLSQNLTIE 831
Query: 3806 ---TVNVAVPDD-STP----ERSALILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHH 3651
++ + D S+P + S + D S G ++ L+P Y+ G +F R R +
Sbjct: 832 SSGAMHASCWDQLSSPSSDWDPSPVARDSSATGPPGMYSDLFPAPYLPGTGQFIFRSRAN 891
Query: 3650 GVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNSQITTCGLSTDHLTALS 3471
G ++ P+P M CLL ++ + LW TLC PDSLL I GLSTDH +
Sbjct: 892 GRANIPYPDMDCLLLSIEQATRLPKEALWDTLCATCPDSLLDPDTIRRVGLSTDHFVIFA 951
Query: 3470 HFYQFKALVTSDQEPTPH---PYGVDSAPTTIRFNHTTGSPGHFFITSEPGAPPPPKXXX 3300
H Y + + T H G+ A ++ +HT G+PGHF + A P
Sbjct: 952 HHYSLRC-----RFHTAHGVIELGMADATSSFDIDHTAGNPGHFSLRQS--ATP----RL 1000
Query: 3299 XXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHP 3120
F ++G LLP ++VH Y KRAKNL SNMKNGFDG+MA + P
Sbjct: 1001 NGGIAQDLAVAALRFNIDGTLLPIRSVHVYSTWPKRAKNLSSNMKNGFDGIMANIHPTKT 1060
Query: 3119 NSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAE 2940
N ++EK + D LDIA RSV+LIHIAGFPGCGKS+PI RLL T P RNF+++VPT E
Sbjct: 1061 NESREKILALDSQLDIAVRRSVRLIHIAGFPGCGKSFPISRLLRT-PTFRNFKVAVPTVE 1119
Query: 2939 LRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVI 2760
LR EWKA + L WRIGTWE LV+DEIYKMPRGY+DLAI DP +EMVI
Sbjct: 1120 LRAEWKAIIGLPTSEAWRIGTWESSLLKSARVLVIDEIYKMPRGYIDLAIHSDPTIEMVI 1179
Query: 2759 VLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIANFFGVPTTSQEP 2580
LGDPLQGEYHSTHP S+N +L +E +HL YLD+YC W+ R P+ +A FF + TTS++P
Sbjct: 1180 ALGDPLQGEYHSTHPSSTNSRLLAEPHHLSMYLDYYCMWSHRVPQNVAAFFHIKTTSKQP 1239
Query: 2579 GFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLS 2400
GFCR LP N IL NS +A TL + A TI++SQGSTY + IHLDR+SS LS
Sbjct: 1240 GFCRYQRELP-NSRILANSQNAGHTLQQCGYAAVTIASSQGSTYDNAACIHLDRNSSLLS 1298
Query: 2399 NSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQGSNSPDDRYPIQTHFIEQL 2220
+ ++VALTRS GV+F+GD + L P S ++FS+ F G P+ F +
Sbjct: 1299 PAHSMVALTRSKVGVIFTGDPAQLSNAPSSNRMFSEF--FSGRTR-----PLHDWFHNEF 1351
Query: 2219 RGVTLISTPLKSR--KLVGACPTEVKHSSTVRAFNPHTIRGSTVRDPSYQPSFAHVVRHT 2046
T+++ PLK+R +L GA +P++ + +D +
Sbjct: 1352 PKATVLTEPLKTRGPRLTGAA-------------SPYSKVFPSGKD-------------S 1385
Query: 2045 SPAVYHPELNRLHPDFKGDAVRS--AVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAM 1872
+PA L PDF+GD VRS A IV G G + P+VS HF+ ETR P H D+PSA+
Sbjct: 1386 TPA--------LKPDFQGD-VRSSRAPIVLGSGELNAPQVSTHFLPETRRPLHWDIPSAI 1436
Query: 1871 PSQCS---LSPPTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLN 1701
P + + PT P EPVYPGE FE LA+ FLPAHDP REI ++G+ S QFP+++
Sbjct: 1437 PESATRPDSTEPTTCHP--EPVYPGETFENLAAHFLPAHDPTDREIYWQGQLSNQFPHMD 1494
Query: 1700 QPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVISPKDQLLGELLFISL 1521
+ F L QP +L+AA H ++DPTLLPASI KRLRFR + PY I+PKD++LG+LLF L
Sbjct: 1495 KEFHLAAQPMSLLAAIHQEKQDPTLLPASIQKRLRFRPSDRPYQITPKDEILGQLLFEGL 1554
Query: 1520 CKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANANRSDPDWRWSAVRIFSK 1341
C+AY R P E FD LFA+CINLNEFAQLSSKTQ TIM NA RSDPDWRWSAVRIFSK
Sbjct: 1555 CRAYHRSPFHTEAFDPVLFAECINLNEFAQLSSKTQATIMGNARRSDPDWRWSAVRIFSK 1614
Query: 1340 SQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQ 1161
+QHK NE SIFGSWKACQTLALMHDAVVL+LGPVKKYQR+FD RDRP H+Y+HA +TP Q
Sbjct: 1615 TQHKVNEGSIFGSWKACQTLALMHDAVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQ 1674
Query: 1160 MSDWCREHLSPCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTT 981
MS+WC++HL+ +ANDYTAFDQSQHGEAVVLE KKM RLSIP+ LI LH +LKT+V+T
Sbjct: 1675 MSNWCQQHLTTAVKLANDYTAFDQSQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVST 1734
Query: 980 QFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWIT 801
QFGPLTCMRLTGEPGTYDDN+DYNLAVI+ +Y+ A+ P MVSGDDSL+DR+P P W+
Sbjct: 1735 QFGPLTCMRLTGEPGTYDDNSDYNLAVINCEYMAANTPTMVSGDDSLLDREPPTRPEWVI 1794
Query: 800 IGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEF 621
+ P+L LRFK E RY FCGY G VRSP+ LFAK +A+DDGS+ DK+ASYL+EF
Sbjct: 1795 LQPLLSLRFKKERGRYATFCGYYASHVGCVRSPVALFAKLAIAVDDGSISDKMASYLSEF 1854
Query: 620 SVGHSLGQEMWNLIPIEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARA 441
++GHSLG +W +P+E V +Q+A FDFFCR+A R KL L +GEVP++II+ I SS +
Sbjct: 1855 ALGHSLGDHLWEALPLEAVPFQSACFDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKW 1914
Query: 440 IARPLYAYLSSSARKLLLKGSKTYR--PFDTEESLQFEGVLQH----AVSIATPPPRLTG 279
+ +Y LSS+AR +L+ S+ R P D + +L +LQH + T P LTG
Sbjct: 1915 ASHAIYTTLSSAARVAILRSSRNSRSMPDDPDTTLLQGELLQHFQVPFMQSDTLLP-LTG 1973
Query: 278 GSLSSMSWFDRIASQAKKSPTSNSQ 204
GS + + + ++ S S++Q
Sbjct: 1974 GSSAPILTPEAFSTSLAFSMASDAQ 1998
>ref|NP_115454.1| polyprotein [Maize rayado fino virus]
gi|81964785|sp|Q91TW9.1|POLG_MRFVC RecName: Full=Genome
polyprotein; Includes: RecName: Full=RNA-directed RNA
polymerase; Includes: RecName: Full=Helicase; Includes:
RecName: Full=Methyltransferase; Contains: RecName:
Full=RNA replication protein; Contains: RecName:
Full=Capsid protein CP1; Short=CP1; AltName: Full=Coat
protein gi|14030260|gb|AAK52838.1|AF265566_1 polyprotein
[maize rayado fino virus]
Length = 2027
Score = 1501 bits (3886), Expect = 0.0
Identities = 859/1900 (45%), Positives = 1099/1900 (57%), Gaps = 12/1900 (0%)
Frame = -3
Query: 5981 LFGGSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGIN 5802
L GG L + ESL+ T HRDT+T+P+VE++A PLR SLE+YP+++ SFL G++
Sbjct: 5 LRGGHLLSGV-ESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTCGVD 63
Query: 5801 ISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINY 5622
ISG+G HPHP HK IE ++L DVWPN R S V+F+KP KF KL+ + NF LINY
Sbjct: 64 ISGFGHAAHPHPVHKTIETHLLLDVWPNYARGPSDVMFIKPEKFAKLQSRQPNFAHLINY 123
Query: 5621 RLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPES 5442
RL P+DTTRYPS+ST LP TVFMHDALMYYTPG IADLF P + ++YA++VVP ES
Sbjct: 124 RLVPKDTTRYPSTSTNLPDCETVFMHDALMYYTPGQIADLFFLCPQLQKIYASVVVPAES 183
Query: 5441 SFTETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISIL 5262
SFT S PE+Y F F SDLVYE EGNP+ +Y QP+SALDWL+T+ S+++L
Sbjct: 184 SFTHLSLHPEIYRFRFQGSDLVYEPEGNPAANYTQPRSALDWLQTTGFTVGHEFFSVTLL 243
Query: 5261 ESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPLAAYHSLRA 5082
+S GPVH LLIQRG P + F PD LPAP SL Q+ R RLVP Y +L
Sbjct: 244 DSFGPVHSLLIQRGRPPVFQAEDIASFRVPDAVALPAPASLHQDLRHRLVPRKVYDALFN 303
Query: 5081 YVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSF 4902
YV AVR LR TDPAGFVRTQ KPE++WVT+ AWD+LQ+FAL T RP S+ F S F
Sbjct: 304 YVRAVR-LRVTDPAGFVRTQVGKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPLFQSPF 362
Query: 4901 ARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQVVR----PSC 4734
AR+ HW +++A+ D L LFG ++ P
Sbjct: 363 ARLSHWLRTHTWALWCLASPSASVSAWATASALGRLLPLHTDRLRLFGFDIIGRRFWPRL 422
Query: 4733 PLNSPFNLHQYFSRTAQLPPSLSASLPRFELVTSPRIVTKWSPCLARFLLSTPFFRTLTT 4554
P + P + + A PP L A FE + + SP +PF+ L
Sbjct: 423 PFHGPEPRFLWETHPACRPPVLFAD-SAFECQILAGLANRCSP--------SPFWSRLFP 473
Query: 4553 QLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMFDQYNGYFNPKPW 4374
+ S + A A R F GPD+PQA+ DQY+ F+P PW
Sbjct: 474 TASPPSWVAYSALALA----------AVPLAALALRWFYGPDSPQALHDQYHATFHPDPW 523
Query: 4373 KLRIAQGPTKCSRGQFLPF--CPRPNSLTQDSDSDDDIFLVNAVSIDLQTEVPEHIRSLA 4200
L + + + R F+ P P SL S
Sbjct: 524 TLDLPRRLRRFERESFMRTGSAPLPQSLPPPEGS-------------------------- 557
Query: 4199 LTKPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHSASQPAPLESRDAVSAE 4020
+ EP DP P L P+ AA V P P AS+P P A S
Sbjct: 558 ---LLPVEPPPVPSDPEPALEPSPPAASV--------PAPAPALASEPPPSPESVAPSRR 606
Query: 4019 TSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXXXXXXXXXPTSVQTI 3840
A +++ P+ + P+S + +
Sbjct: 607 RR-RARRAAARAPSPSPALLGADLRFGDLPPVSA------------------WDSDPEIS 647
Query: 3839 VVPSSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRK 3660
+ S G++ V P P+ + L DPS G V F +L Y+ F R
Sbjct: 648 KLGESTQGTVFAVTPG-PRAPEPDTARLDADPSASGPVMEFRELQKGAYIEPTGAFLTRA 706
Query: 3659 RHHGVSSAPFPAMP-CLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNSQITTCGLSTDHL 3483
R+ SS P+P CLL AV G+ LW+ LC +LPDS+L + + T GL+TDH
Sbjct: 707 RNSVSSSIPYPTRAACLLVAVSQATGLPTRTLWAALCANLPDSVLDDGSLATLGLTTDHF 766
Query: 3482 TALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGSPGHFFITSEPGAPPPPKXX 3303
L+ + + S+ G+ A + HT PGHF + ++ + P
Sbjct: 767 AVLARIFSLRCRFVSEHGDVE--LGLHDATSRFTIRHT---PGHFELVADNFSLPALVGA 821
Query: 3302 XXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQH 3123
+ +LPF+ VH +R +V+RAKNLISNMKNGFDGVMA +P
Sbjct: 822 SSVPGADLAEACKRFVAPDRTVLPFRDVHIHRTDVRRAKNLISNMKNGFDGVMAQANPLD 881
Query: 3122 PNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTA 2943
P SA+E+F+ D LDIA R V+LIHIAGF GCGKS+PI LL T P R F+++VPT
Sbjct: 882 PKSARERFLMLDSCLDIAAPRRVRLIHIAGFAGCGKSWPISHLLRT-PAFRVFKLAVPTT 940
Query: 2942 ELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMV 2763
ELR EWKA MD ++ WR GTWE LV+DE+YKMPRGYLDLAI D ++ V
Sbjct: 941 ELRDEWKALMDPRDQDKWRFGTWESSLLKTARVLVIDEVYKMPRGYLDLAIHADAAIQFV 1000
Query: 2762 IVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIANFFGVPTTSQE 2583
I+LGDP+QGEYHSTHP SSN +LS E +LRPY+DFYC W+RR P+ +A VPTTS E
Sbjct: 1001 ILLGDPIQGEYHSTHPSSSNARLSPEHRYLRPYVDFYCFWSRRIPQNVARVLDVPTTSTE 1060
Query: 2582 PGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQL 2403
GF R P + IL ++ +A +L + A TI++SQGST + P +HLD HS +L
Sbjct: 1061 MGFARYSQQFPFSGKILISARDSAKSLADCGYHAVTIASSQGSTIAGPAYVHLDNHSRRL 1120
Query: 2402 SNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQGSNSPDDRYPIQTHFIEQ 2223
S+ +LVA+TRS G++F+GD++ + LFS + D R +++ F
Sbjct: 1121 SHQHSLVAITRSKSGIVFTGDKAAADGTSSANLLFSAVLL-------DRRLSVRSLF--- 1170
Query: 2222 LRGVTLISTPLKSRKLVGACPTEVKHSSTVRAFNPHTIRGSTVRDPSYQPSFAHVVRHTS 2043
L+ CP + P T R +R Y + R
Sbjct: 1171 -------------SALLPCCPFVTE---------PPTSRAVLLRGAGYGIARPLRARDAP 1208
Query: 2042 PAVYHPELNRLHPDFKGDAVR-SAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPS 1866
P L PD+ GD + S+ + GDG + P+VS HF+ ETR P H D+PSA
Sbjct: 1209 P---------LGPDYVGDVILDSSAPILGDGSANAPQVSTHFLPETRRPLHFDIPSAR-H 1258
Query: 1865 QCSLSP--PTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPF 1692
Q + P P SA EPVYPGE FE+LAS FLP D +E F+GE S QFP+L++PF
Sbjct: 1259 QVADHPLAPDHSACAIEPVYPGESFESLASLFLPPTDAESKETYFRGEMSNQFPHLDKPF 1318
Query: 1691 DLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVISPKDQLLGELLFISLCKA 1512
+L Q +L+A H+ + DPTLLPASI KRLRFR + PYVI+P+D++LG LL+ + C+A
Sbjct: 1319 ELGAQTSSLLAPLHNSKHDPTLLPASIGKRLRFRHSEAPYVIAPRDEILGSLLYEAWCRA 1378
Query: 1511 YGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQH 1332
Y R P VEPFD L+A+CINLNEFAQLSSKTQ TIMANANRSDPDWRWSAVRIF+K+QH
Sbjct: 1379 YHRSPRDVEPFDPDLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQH 1438
Query: 1331 KTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSD 1152
K NE S+FGSWKACQTLALMHDAVVLLLGPVKKYQR FD RDRP+ +YVHA HTPF+M+D
Sbjct: 1439 KVNEGSLFGSWKACQTLALMHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMAD 1498
Query: 1151 WCREHLSPCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFG 972
WCR HL+P +ANDYTAFDQSQHGEAVV E KM RLSIP L+ LH YLKTNV+TQFG
Sbjct: 1499 WCRAHLTPAVKLANDYTAFDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFG 1558
Query: 971 PLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGP 792
PLTCMRLTGEPGTYDDNTDYN+AV+H +Y + S P MVSGDDSL+D +P W I P
Sbjct: 1559 PLTCMRLTGEPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWSAIAP 1618
Query: 791 MLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVG 612
ML L FK E RY FCGY VG +GAVRSP LFAK ++A+DDGS+ DKL +YLTEF+VG
Sbjct: 1619 MLALTFKKERGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVG 1678
Query: 611 HSLGQEMWNLIPIEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIAR 432
HS G W ++P+E V YQ+A FDFFCR+A + K++L++GE P++++S + +
Sbjct: 1679 HSSGDAFWTILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASH 1738
Query: 431 PLYAYLSSSARKLLLKGSKTYR--PFDTEESLQFEGVLQH 318
+YA ++SS R+ LL S+ R P D E S Q +G L H
Sbjct: 1739 SVYALMNSSHRRQLLHSSRRPRSLPEDPEVS-QLQGELLH 1777
>ref|YP_004464920.1| polyprotein [Switchgrass mosaic virus] gi|332672309|gb|AEE25899.3|
polyprotein [Switchgrass mosaic virus]
Length = 2061
Score = 1491 bits (3860), Expect = 0.0
Identities = 850/1907 (44%), Positives = 1104/1907 (57%), Gaps = 19/1907 (0%)
Frame = -3
Query: 5981 LFGGSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGIN 5802
L GG L + ESL+ T HRDT+T+P+VE++A PLR SLE+YP+++ FL GI+
Sbjct: 5 LRGGHLLSGV-ESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHPFLHTCGID 63
Query: 5801 ISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINY 5622
ISG+G HPHP HK IE ++L DVWPN R S V+F+KP KF KL+ + +NF LINY
Sbjct: 64 ISGFGHAAHPHPVHKTIETHLLMDVWPNYARGPSDVMFIKPEKFAKLQTRQANFSHLINY 123
Query: 5621 RLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPES 5442
RL P+DTTRYP++ST LP TVFMHDALMYY+PG IADLF P + +LYA+LVVP ES
Sbjct: 124 RLVPKDTTRYPTTSTDLPDCETVFMHDALMYYSPGQIADLFHQCPQLQKLYASLVVPAES 183
Query: 5441 SFTETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISIL 5262
SFT S PELY F F DLVYE EGNP+ +Y QP+ AL+WL+T+ ++++L
Sbjct: 184 SFTHLSLHPELYRFRFQGDDLVYEPEGNPAANYTQPRRALEWLQTTGFTSGHEFFTVTLL 243
Query: 5261 ESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPLAAYHSLRA 5082
+S GPVH LLIQRG P + F PD LPAP SL Q+ R RLVP Y +L
Sbjct: 244 DSFGPVHSLLIQRGRPPVFSAEDSVSFRVPDAIALPAPASLHQDLRHRLVPRRVYDALFN 303
Query: 5081 YVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSF 4902
YV AVRTLR TDPA FVRTQ +KPE++WVT+ AWD+LQ+FAL T RP S+ F S
Sbjct: 304 YVRAVRTLRVTDPADFVRTQVSKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPLFQSPL 363
Query: 4901 ARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQVVR----PSC 4734
ARV HW ++ + + D L LFG ++ P
Sbjct: 364 ARVAHWLRTHTWALWCLASPAASLTAWLAASRFGRLTVLHTDRLRLFGCDLIGRRFWPIL 423
Query: 4733 PLNSPFNLHQYFSRTAQLPPSLSASLPRFELVTSPRIVTKWSPCLARFLLSTPFFRTLTT 4554
P SP + + +A P +L A FE + + SP LS F
Sbjct: 424 PFQSPEARFLWETHSACKPYTLFAG-SAFECRVLGALAHRCSPSPT---LSRLFPEAQPA 479
Query: 4553 QLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMFDQYNGYFNPKPW 4374
+ A R F+GPD+PQA+ DQY+ F+P W
Sbjct: 480 RWVVFGSLALAA---------------VPLTALLVRWFLGPDSPQALHDQYHATFHPDSW 524
Query: 4373 KLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQTEVPEHIRSLALT 4194
L + + C R FL P S + + + P + SL
Sbjct: 525 SLDLPRRLRSCVREPFLLTGAAPASTPTSAPEN------------FSPDTPRPLTSLRAQ 572
Query: 4193 KPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPH-SASQPAPLESRDAVSAET 4017
EPS+ PS + P A + P P P +AS P E T
Sbjct: 573 A----EPSQ----PSDVQPPKPSAVQPQVAPEPAPAPISPEPAASLPISAEPESVFEPPT 624
Query: 4016 SI--PAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXXXXXXXXXPTSVQT 3843
S PA+P+ SS + +A + +
Sbjct: 625 SHSPPAQPVADSEPTSQPSSRAPTP-------VRQAALLGADLRFGDLPPRSSWAQDPEL 677
Query: 3842 IVVPSSLTGSLDTVNVAVPDDSTPERSA--LILDPSGFGEVSTFAQLYPDDYVLGCAEFF 3669
+ S G TV +P PE + L +DP+ G + F L P Y+ F
Sbjct: 678 SPLGESTQG---TVFAQIPTPREPESALARLEVDPTASGPIMEFRDLQPGLYLGTTGSFL 734
Query: 3668 CRKRHHGVSSAPFPAMP-CLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNSQITTCGLST 3492
R R+ S+ +PA CLL AV + LW+ L +LPDS+L + + GL+T
Sbjct: 735 TRARNSVSSTIQYPARAACLLVAVRNATSLPTATLWAALAANLPDSILDDGSLVRLGLTT 794
Query: 3491 DHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGSPGHFFITSEPGAPPPP 3312
DH L+ + + SD GV A + HT PGHF + ++ + P
Sbjct: 795 DHFAVLARIFSLRCRFVSDHIDVE--LGVADATSRFTIRHT---PGHFELVADDYSLPAL 849
Query: 3311 KXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVD 3132
+ +LPF+ VH +R +VKRAKNLISNMKNGFDGVMA +
Sbjct: 850 VGASTIPGADLAESCKRFVASDRTVLPFRDVHIHRTSVKRAKNLISNMKNGFDGVMAQAN 909
Query: 3131 PQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISV 2952
P P SA+E+F+ D LDIA R V+LIHIAGF GCGKS+P+ +LL T P R F+++V
Sbjct: 910 PLDPKSARERFLMLDSCLDIAAPRVVRLIHIAGFAGCGKSWPVAQLLKT-PAFRTFKLAV 968
Query: 2951 PTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHL 2772
PT ELR EWK M+ ++ WR GTWE LV+DE+YKMPRGYLDLAI D +
Sbjct: 969 PTTELRDEWKGLMEPRDQDKWRFGTWESSLLKSARTLVIDEVYKMPRGYLDLAIHADASI 1028
Query: 2771 EMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIANFFGVPTT 2592
+ VI+LGDP+QGEYHSTHP SSN +LS E +LRPY+DFYC W+RR P+ +A GVP+T
Sbjct: 1029 QFVILLGDPIQGEYHSTHPSSSNARLSPEHVYLRPYIDFYCFWSRRIPQYVATILGVPST 1088
Query: 2591 SQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHS 2412
S+ G+ R + P+N IL ++ ++A +L + +A TI++SQGST + PV IHLD H+
Sbjct: 1089 SKVSGYARHSSQFPLNGKILISAMTSAKSLVDCGYQAITIASSQGSTVNGPVHIHLDNHA 1148
Query: 2411 SQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQGSNSPDDRYPIQTHF 2232
+LS+ +LVA+TRS G++F+GD S+ S LFS +
Sbjct: 1149 RRLSHQHSLVAITRSRAGLVFTGDPSVADGTSSSNLLFSAV------------------- 1189
Query: 2231 IEQLRGVTLISTPLKSRKLVGA----CPTEVKHSSTVRAFNPHTIRGSTVRDPSYQPSFA 2064
L++ P+ R L A CP +P T R +R Y
Sbjct: 1190 --------LMNHPISVRSLFSALLPRCPF---------VESPPTSRSVLLRGAGYG---- 1228
Query: 2063 HVVRHTSPAVYHPELNRLHPDFKGDAVRS-AVIVCGDGIDHLPRVSPHFIAETRLPYHSD 1887
++P + E + PDF+GD + + GDG + P+VS HF+ E+R P H D
Sbjct: 1229 -----SAPPLRPRESPPMRPDFQGDVIADLSAPFLGDGSSNAPQVSTHFLPESRRPLHFD 1283
Query: 1886 MPSAMPSQCSLSP--PTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQF 1713
+PSA Q + P P SA EPVYPGE FE LA+ FLP D +EI F+GE S QF
Sbjct: 1284 VPSAR-HQVADHPLKPDHSACAIEPVYPGESFEQLAALFLPPTDAESKEIRFRGELSNQF 1342
Query: 1712 PYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVISPKDQLLGELL 1533
P+L++PF++ QP +L+A H+ + DPTLLPASI KRLRFR N + Y IS +D++LG LL
Sbjct: 1343 PHLDKPFEISAQPSSLLAPVHNSKHDPTLLPASIAKRLRFRHNDSAYTISARDEILGGLL 1402
Query: 1532 FISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANANRSDPDWRWSAVR 1353
+ + C+AY R P +EPFD L+A+CINLNEFAQLSSKTQ TIMANANRSDPDWRWSAVR
Sbjct: 1403 YEAWCRAYRRSPLDIEPFDPVLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVR 1462
Query: 1352 IFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPAHIYVHASH 1173
IF+K+QHK NE S+FGSWKACQTLALMHDAVVLLLGPVKKYQR+FD RDRP+H+YVHA H
Sbjct: 1463 IFAKTQHKVNEGSLFGSWKACQTLALMHDAVVLLLGPVKKYQRVFDQRDRPSHLYVHAGH 1522
Query: 1172 TPFQMSDWCREHLSPCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKT 993
TPF+M++WC++HL+P +ANDYTAFDQSQHGEAVV E KM RLSIP+ LI LH YLKT
Sbjct: 1523 TPFEMAEWCQQHLTPAIKLANDYTAFDQSQHGEAVVFERFKMSRLSIPQELIDLHVYLKT 1582
Query: 992 NVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNP 813
NV+TQFGPLTCMRLTGEPGTYDDNTDYN+AV+H +Y + S P MVSGDDSL+D +P
Sbjct: 1583 NVSTQFGPLTCMRLTGEPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSLLDSEPPVRD 1642
Query: 812 LWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASY 633
W + PML L FK E RY FCGY VG +GAVRSP LFAK ++A+DD S+DDKL +Y
Sbjct: 1643 QWAAVEPMLALTFKKERGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDESIDDKLIAY 1702
Query: 632 LTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILS 453
LTEF+VGHSLG W ++P+E V YQ+A FDFFCR+A + K++L++GE P++++S
Sbjct: 1703 LTEFTVGHSLGDAFWTILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSMAFQ 1762
Query: 452 SARAIARPLYAYLSSSARKLLLKGSKTYR--PFDTEESLQFEGVLQH 318
+ + +YA ++SS R+ LL S+ R P D E S Q +G L H
Sbjct: 1763 GLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVS-QLQGELLH 1808
>gb|ACV53023.1| polyprotein [Blackberry virus S]
Length = 2035
Score = 1488 bits (3851), Expect = 0.0
Identities = 843/1904 (44%), Positives = 1110/1904 (58%), Gaps = 11/1904 (0%)
Frame = -3
Query: 5972 GSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISG 5793
G+ ++ E+L+ T HRDT++S L+E V DP R SL++YP++V +FL GI+ SG
Sbjct: 41 GAGFKDVIEALAPTSHRDTISSALLETVVDPFRSSLQRYPWSVPTHHQTFLQNCGIDASG 100
Query: 5792 YGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLT 5613
+G K+HPHP HK +E ++ + W L S+V+FMKPSKF KL+ +F EL NYRL
Sbjct: 101 FGFKSHPHPVHKILETNLIHNTWSCLASTDSAVMFMKPSKFAKLQAAQPHFTELHNYRLV 160
Query: 5612 PQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFT 5433
+D+TRYP +S+ +P T+FMHD +MYYTP + DLFL +P + +LYA+LVVPPES FT
Sbjct: 161 AKDSTRYPVTSSHVPNIETIFMHDTIMYYTPAQVLDLFLQSPKLQKLYASLVVPPESDFT 220
Query: 5432 ETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESI 5253
+ +PELY F F LVYELE NP+H+Y QPKSAL WL+T+TI D +L++SIL+S
Sbjct: 221 SITLYPELYRFRFDGHSLVYELEQNPAHNYTQPKSALVWLKTTTIIGPDFSLTVSILDSQ 280
Query: 5252 GPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPLAAYHSLRAYVM 5073
GP+H LLIQRG P H + T +F TP LLPAP+SL+Q+ R RLVP Y ++ YV
Sbjct: 281 GPLHSLLIQRGEPPLHSRHDTAEFRTPPAILLPAPSSLNQDVRHRLVPKKVYDAVFLYVR 340
Query: 5072 AVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARV 4893
VRTLR TDPAGF+RTQS+K E +WVT+ AWD+L +FAL T + RP +Y F+S+ AR+
Sbjct: 341 TVRTLRVTDPAGFIRTQSSKAEHSWVTSFAWDNLAHFALQTASHRPRTTYYLFSSALARL 400
Query: 4892 KHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQVVRPSCPLNSPFN 4713
HW S+ASV + S+ F L S N
Sbjct: 401 SHWCRNHQLAL-----------SWASVVAISPAAALSSLSVSKF----------LRSELN 439
Query: 4712 LHQYFSRTAQLPPSLSASLPRFELVTSPRIVTKWSPCLARFLLSTPFFRTLTTQLNFLSK 4533
F R + PP + L S R + A T F T NF S
Sbjct: 440 SLAIFRRWIKAPPHFLFAPKAPFLSMSFRALRTGPLLFANTGFQTRLFPTAAQ--NFCSA 497
Query: 4532 KCFFAKGFPHSKKXXXXXXXXXXXXXA------YRRFMGPDAPQAMFDQYNGYFNPKPWK 4371
A FP R+F+GPD+PQ+M D Y F+P W+
Sbjct: 498 NPLLASFFPVKPLHRGAFLASLLAASVPVALLLVRQFVGPDSPQSMHDAYADLFHPADWR 557
Query: 4370 LRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQTEVPEHIRSLALTK 4191
L + P S FLP P + D+ + +++I + P SLA
Sbjct: 558 LIFNRKPLFASPEPFLPITTVPAPV--------DLPQIESIAIPAPSPAPPSPTSLA--- 606
Query: 4190 PIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHSASQPAPLESRDAVSAETSI 4011
P P LDP+P + AP P + + PAP A + I
Sbjct: 607 PTPIPPVTSTLDPAPA--------------SASAPAATPPAIAAPAPAPEPQAEALSLLI 652
Query: 4010 PAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXXXXXXXXXPTSVQTIVVP 3831
P+E ++ P + + + +
Sbjct: 653 PSEH--QPAAPPPIPELLP---------------------------------AAGQLQLE 677
Query: 3830 SSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHH 3651
SS G + + A P+ + PE S L D S G V F++L+P Y+ F R R
Sbjct: 678 SS--GVVSNLTPAAPEPAAPEPSPLQADSSARGPVQLFSELFPGSYIGTTGAFNSRYRAS 735
Query: 3650 GVSSAPFPA-MPCLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNSQITTCGLSTDHLTAL 3474
G + P+PA CLL + ++ +LW TL +LPD LL +I+ GLSTDH L
Sbjct: 736 GRAPTPYPAGTDCLLVTIEQATSISRRDLWETLVTNLPDCLLAPCEISKHGLSTDHFAVL 795
Query: 3473 SHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGSP---GHFFITSEPGAPPPPKXX 3303
+ FY + + P G+ A T R +H S GHF + + P
Sbjct: 796 AFFYSLRVTFLTSHGPVD--LGMSDATTNFRIDHQPESKDLMGHFSLHQDS----KPVPT 849
Query: 3302 XXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQH 3123
T F L+G LLPF TVH + RAKNLISNMKNGFDGV+A +DP H
Sbjct: 850 LNGGTGSELATAATRFNLDGCLLPFNTVHTFVTAPSRAKNLISNMKNGFDGVLANIDPHH 909
Query: 3122 PNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTA 2943
++A+++ + DGI+D+AK R V+L HIAGF GCGKSYPI RLL T P R F+++VPT
Sbjct: 910 TSTARDRLLCLDGIIDVAKPRRVRLFHIAGFAGCGKSYPIARLLKT-PLFREFKVAVPTV 968
Query: 2942 ELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMV 2763
ELR EWK + + P WR+ TWE LV+DE+YKMPRGY+DLA+ DP +E+V
Sbjct: 969 ELRAEWKDLLKIRPGAQWRLSTWESSLLKSARILVIDEVYKMPRGYVDLAVHADPTIELV 1028
Query: 2762 IVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIANFFGVPTTSQE 2583
I+LGDPLQG YHSTHP S+N +LS E ++L Y+DFYC W+ R P+ +A FFGV +T+
Sbjct: 1029 ILLGDPLQGVYHSTHPSSTNSRLSPETHYLSKYIDFYCLWSHRIPQDVAKFFGVHSTNLA 1088
Query: 2582 PGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQL 2403
PGF + V +L + ILTNS ++ TL + + TI++SQGSTY I LDR+S+ L
Sbjct: 1089 PGFSKWVPNLSPSSKILTNSQNSMKTLVDCGFASVTIASSQGSTYPGATNILLDRNSALL 1148
Query: 2402 SNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQGSNSPDDRYPIQTHFIEQ 2223
S+S +LVALTRS KGV+F+GD+ +L+ GP S LFS+ F G + F +
Sbjct: 1149 SHSNSLVALTRSKKGVVFTGDRKMLEEGPTSNLLFSRY--FTGKV-----VSLAGLFPSE 1201
Query: 2222 LRGVTLISTPLKSRKLVGACPTEVKHSSTVRAFNPHTIRGSTVRDPSYQPSFAHVVRHTS 2043
L ++ PL SR + + H+ R+ + I+ S D P
Sbjct: 1202 LPKCPHLTVPLTSRSVKLSGAGLYDHAIPFRSASAPMIKSSVTSDVILDP---------- 1251
Query: 2042 PAVYHPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQ 1863
VR + GDG + P++S HF+ ETR P H D+PS PS
Sbjct: 1252 -------------------VRPFL---GDGDLNAPQISTHFLPETRRPLHFDIPSGKPSS 1289
Query: 1862 CSLSPPTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLF 1683
S + + PV EPVYPGE FE LA+ FLP HDP REI F+G+ S QFP++N+PF+L
Sbjct: 1290 DSPASAEPTVPVHEPVYPGETFENLAAHFLPCHDPEDREIHFRGQLSNQFPHINRPFELA 1349
Query: 1682 LQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVISPKDQLLGELLFISLCKAYGR 1503
Q +L+AA H + DPTLLPASIPKRLRFR ++ PY ++ KD++LG LL+ LC+AY R
Sbjct: 1350 CQSSSLLAAVHSERDDPTLLPASIPKRLRFRPSSAPYRLTAKDEVLGSLLYEGLCRAYHR 1409
Query: 1502 HPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTN 1323
+ +V PF+E L+ +CI LNEFAQLSSKTQ+ IMAN+ RSDPDWR+SAVRIFSK+QHK N
Sbjct: 1410 NSFTVLPFNETLYLECIALNEFAQLSSKTQSVIMANSKRSDPDWRYSAVRIFSKAQHKVN 1469
Query: 1322 EASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCR 1143
E SIFG+WKACQTLALMHDAVVLLLGPVKKYQR+FD +DRPAH+YVHA +TP QMS WC+
Sbjct: 1470 ENSIFGNWKACQTLALMHDAVVLLLGPVKKYQRMFDAQDRPAHLYVHAGNTPAQMSSWCQ 1529
Query: 1142 EHLSPCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLT 963
HL+ H+ANDYTAF QSQHGEAVVLE KKM RLSIP+ LI LH +LKTNV TQFGPLT
Sbjct: 1530 NHLTDTVHLANDYTAFVQSQHGEAVVLERKKMERLSIPQALIDLHVFLKTNVETQFGPLT 1589
Query: 962 CMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLH 783
CMRLTGEPGTYDDN+DYNLAVI+ +Y + +P M+SGDDSL+D +P P W + P+L
Sbjct: 1590 CMRLTGEPGTYDDNSDYNLAVINLEYSASHVPTMISGDDSLLDFEPPRRPEWSALEPLLA 1649
Query: 782 LRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSL 603
LRFK E RY FCGY VG +GAVRSPI LFAK ++A+DDGSL DKL SYL EF+VGHSL
Sbjct: 1650 LRFKKERDRYATFCGYYVGKAGAVRSPIALFAKLMIAVDDGSLGDKLISYLAEFAVGHSL 1709
Query: 602 GQEMWNLIPIEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLY 423
G W L+P+E V +Q+A FDFFCR+A K+ LK+GEV ++I++ + + +Y
Sbjct: 1710 GDPFWTLLPLEAVLFQSACFDFFCRRAPPALKISLKLGEVSESIMARLGRGLNWASSAVY 1769
Query: 422 AYLSSSARKLLLKGSKTYRPF-DTEESLQFEGVLQHAVSIATPP 294
+ LSS+ R+ LL S+ R D E + +G L + P
Sbjct: 1770 SMLSSAQRRALLTSSRQGRSLPDNPEVSKLQGELLQSFQFVPQP 1813
>ref|YP_002756536.1| putative 230 kDa polyprotein [Grapevine Syrah virus 1]
gi|225691150|gb|ACO06249.1| putative 230 kDa polyprotein
[Grapevine Syrah virus 1]
Length = 2081
Score = 1458 bits (3774), Expect = 0.0
Identities = 850/2013 (42%), Positives = 1121/2013 (55%), Gaps = 61/2013 (3%)
Frame = -3
Query: 6125 SVYYSPSSQTFFYYPTMN-----PTNFPHLFRTKTTVNPPNVPR------PIKPL----- 5994
+ Y SPS+ F + + P H R V P +PR PI L
Sbjct: 6 TAYASPSAAFFALFQEQDLRCFRPLTLAHSLRYDAPVRPRQLPRLRSITVPITSLDEGFT 65
Query: 5993 ------PSPRLFGGSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSL 5832
PS L GG L L E L+ T HRDTV SP++EAVA PLR S+++YPY V
Sbjct: 66 PILIARPSLPLLGGG-LKELVEMLAPTTHRDTVASPILEAVAGPLRTSIQRYPYEVPAHA 124
Query: 5831 TSFLSKRGINISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQK 5652
L + GI SG+G K HPHP HK IE ++L + W NL R+ S+VLFMK SKF KL+ +
Sbjct: 125 VPVLQRFGIEASGFGFKAHPHPVHKTIEIHLLFEHWLNLCRSPSAVLFMKQSKFEKLQHE 184
Query: 5651 DSNFHELINYRLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQL 5472
++NF L NY LT +DTTRY + P + FMHDAL Y++ +A F PH+ +L
Sbjct: 185 NANFEALANYNLTARDTTRYEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKL 244
Query: 5471 YATLVVPPESSFTETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRC 5292
+A+LVVPPES FT S FPE+Y + F S L Y+LEGNP H Y QP+ AL+WL+T+TIRC
Sbjct: 245 FASLVVPPESDFTNLSLFPEIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRC 304
Query: 5291 SDLTLSISILESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLV 5112
+L L+++ LES GPVH LLIQRG H E+ F PD LP +L Q+ R RLV
Sbjct: 305 GNLYLTVTKLESWGPVHSLLIQRGKPSVHLEHDEVSFVGPDAVALPEAAALRQDLRHRLV 364
Query: 5111 PLAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPA 4932
P Y +L YV AVRTLRTTDP GFVRTQS K E++WVT+ AWD+LQ+F T R
Sbjct: 365 PRTVYDALFVYVRAVRTLRTTDPVGFVRTQSNKAEYSWVTSAAWDNLQHFVTETAAHRVP 424
Query: 4931 VSYLTFASSFARVKHWXXXXXXXXXXXXXXXXXXAS-FASVKIAHYCSTRQVDSLILFGK 4755
+ F S+FA+ ++W + F K+A S+R + +L +F
Sbjct: 425 NRHFFFNSTFAKCRYWCSQHKLGLLTVTTPPACGLTLFTGAKLASAMSSR-LTALAVFHH 483
Query: 4754 QVVRPSCPLNSPFNLHQYFSRTAQLPPSLSASLPRFELVT---SPRIVTKWSPCLARFLL 4584
VV P +P + +LP L +S+P S R++ ++ P L RF
Sbjct: 484 WVVPPPTLFFTP-KAPLLAIQLTRLPQPLFSSVPFLHKPLGKLSLRLLNRF-PFLRRFFP 541
Query: 4583 STPF--FRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMF 4410
P + L T LS + A R F+GPDAPQA+
Sbjct: 542 DAPIPTWARLLTVAIALSPAVWLA----------------------IRHFIGPDAPQALN 579
Query: 4409 DQYNGYFNPKPWKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQT 4230
D Y +F+P W+L + P + + P+ P P + D D+
Sbjct: 580 DHYVRFFHPDRWQLTFERQPRFVALDRTFPW-PLPQAPEPTEPRDSDV------------ 626
Query: 4229 EVPEHIRSLALTKPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHSASQPAP 4050
P E + P P++ P A PP +
Sbjct: 627 ------------------PLETVPSPLPVVAPLPAPAT-------SVPPVD--------- 652
Query: 4049 LESRDAVSAETSIPAEPLISKSSHPTL---SSXXXXXXXXXXXPISEAPISTXXXXXXXX 3879
SA T EP +S S T+ S I P +
Sbjct: 653 ------TSATTVSAVEPSLSTESLKTVEAPSGTTILQPRELKDTIFPLPAAALAVTPPEP 706
Query: 3878 XXXXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDST----PERSALILDPSGFGEVSTFAQ 3711
P S T++ + L+ L T +V+ P PE S L D S GEVS F
Sbjct: 707 APAPAEPVSASTVLGTAPLSRDLHTGHVSTPATEPGLVEPEHSPLAADSSATGEVSEFFN 766
Query: 3710 LYPDDYVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSL 3531
L+P D++ A F R+R +S A +PAM CLL AV + LW T+C + PDS+
Sbjct: 767 LHPADWIAPTATFLARRRGETISGAKYPAMDCLLAAVSAGANIPKDALWKTICSYFPDSM 826
Query: 3530 LQNSQITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGS--- 3360
L+ I GLST H AL+ ++ +A T GV+ + +HT S
Sbjct: 827 LREEDIAKHGLSTHHFAALAREHRLQA--TFHSAGNQFVLGVEHPSVSFHIDHTPESATA 884
Query: 3359 PGHFFITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNL 3180
PGHF + ++ P F++ +LPFQ H+Y NV RAKNL
Sbjct: 885 PGHFSLRADERQHSP---RLLGGRAADLVHAALKFKVGSAVLPFQQAHDYTTNVARAKNL 941
Query: 3179 ISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQ 3000
ISNMKNGFDGV+A +DP H N ++++ ++ DG +DIA R VKLIHIAGFPGCGKSYPI
Sbjct: 942 ISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAMDIAAPRDVKLIHIAGFPGCGKSYPIA 1001
Query: 2999 RLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYK 2820
+LL + ++F+I+VPT ELR+EWK + ++P++NWRI TWE LV+DEIYK
Sbjct: 1002 QLLKSRA-FKHFKIAVPTVELRNEWKGVLKVKPQDNWRISTWESSLLKSARILVIDEIYK 1060
Query: 2819 MPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWT 2640
MPRGYLDLAI DP +++VI LGDPLQG YHSTH SSNH+LSSE+ HL+PY+D+YC W+
Sbjct: 1061 MPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTHSDSSNHRLSSEVKHLQPYMDYYCLWS 1120
Query: 2639 RRCPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQ 2460
R P+ I FFG+ +TS PGF ++P N L NS SAA L + + TI++SQ
Sbjct: 1121 HRVPQDIGTFFGIKSTSTVPGFKSYQANIPSNLRQLANSQSAAKVLNQCGFSSVTIASSQ 1180
Query: 2459 GSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQF 2280
GSTYS+P IHLDRHS LS++ +LVALTRS GV+F+GD+ +L+ P LFS Q
Sbjct: 1181 GSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSGVIFTGDKRVLE-APGGNLLFSSYFQ- 1238
Query: 2279 QGSNSPDDRYPIQTHFIEQLRGVTLISTPLKSRKLVGACPTEVKHSSTVRAFNPHTIRGS 2100
+ + ++ F + ++ PLK R PT++ +
Sbjct: 1239 ------EKKVDLRALFPTEFPCCPILLEPLKRR------PTDLTGGA------------- 1273
Query: 2099 TVRDPSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHF 1920
P + E +P+ + D A +VCGDG + P+VS HF
Sbjct: 1274 -------------------PFPFRDEARVFNPERRDDVFVEAAVVCGDGSSNAPQVSTHF 1314
Query: 1919 IAETRLPYHSDMPSAMPSQCSLSPPTFSAPVF-EPVYPGEDFETLASTFLPAHDPHLREI 1743
+ ETR P H D+PSA P + P F EPVYPGE FE +A+ FLPAHDP ++EI
Sbjct: 1315 LPETRRPLHFDLPSAKPEFAAHEAPAPLTDTFIEPVYPGETFENIAAHFLPAHDPEVKEI 1374
Query: 1742 IFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVIS 1563
+FK +RS QFP+++QPF + QP +L AA HH +KDPTLL ASI KRLRFR + PY I+
Sbjct: 1375 LFKDQRSNQFPFIDQPFHVGAQPASLCAAVHHSKKDPTLLAASIEKRLRFRASDAPYQIT 1434
Query: 1562 PKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANANRS 1383
KD++LG +LF + C+A R P+ PFDEALFA+CI LNEFAQL+SKTQ IMAN RS
Sbjct: 1435 AKDEILGSMLFEAHCRAMRRDPNVRVPFDEALFAECIALNEFAQLTSKTQAVIMANHERS 1494
Query: 1382 DPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDR 1203
DPDWR++AVRIF+K+QHK N S+FG WKACQTLALMHDAV+LL GPVKKYQ + D RDR
Sbjct: 1495 DPDWRYTAVRIFAKNQHKVNSGSLFGPWKACQTLALMHDAVILLFGPVKKYQLIHDERDR 1554
Query: 1202 PAHIYVHASHTPFQMSDWCREHLSP-------------------C--EHVANDYTAFDQS 1086
P HI+++A TP +MS+WC++ L+P C VANDYTAFDQS
Sbjct: 1555 PEHIFIYAGRTPQEMSEWCQKFLTPRSASSPVPVMVSGDDSLIGCHPHFVANDYTAFDQS 1614
Query: 1085 QHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNL 906
QHGEA VLE KM R++IPE LI LH +KT++TTQFGPLTCMRLTGEPGTY DN+DYNL
Sbjct: 1615 QHGEAAVLERLKMERVNIPEWLIALHIMIKTHITTQFGPLTCMRLTGEPGTYFDNSDYNL 1674
Query: 905 AVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVG 726
AVI +Y M+ + NPLW I P+L LRFK E TRY FCGY VG
Sbjct: 1675 AVIFLEYSMSG-------------QWLSENPLWPAIKPLLALRFKKEKTRYGNFCGYYVG 1721
Query: 725 PSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAAL 546
+GAVR P LFAK +A++D S+ DK+ASY TEF++GHSLG +W+L+P+E+V YQ+A+
Sbjct: 1722 AAGAVRMPRALFAKIFIAVEDASIADKMASYATEFAIGHSLGDALWSLLPVEEVVYQSAV 1781
Query: 545 FDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLL-KGSKTY 369
FDF CR A RE KL+ K+G V +++ + A + Y +L+S+ RK+LL + + +
Sbjct: 1782 FDFLCRNAPRELKLLFKLGPVERSVVEAVQEFATWASYAFYRFLNSAQRKVLLTRSPQLH 1841
Query: 368 RPFDTEESLQFEGVLQHAVSIATPPPRLTGGSL 270
P D E Q +G L + S+ P LTGG L
Sbjct: 1842 FPGDAPEVSQLQGELLQSFSMMQPTLPLTGGLL 1874
>gb|ACV83739.1| replicase-associated polyprotein [Grapevine virus Q]
Length = 2081
Score = 1457 bits (3771), Expect = 0.0
Identities = 850/2014 (42%), Positives = 1119/2014 (55%), Gaps = 62/2014 (3%)
Frame = -3
Query: 6125 SVYYSPSSQTFFYYPTMN-----PTNFPHLFRTKTTVNPPNVPR------PIKPL----- 5994
+ Y SPS+ F + + P H R V P +PR PI L
Sbjct: 6 TAYASPSAAFFALFQEQDLRCFRPLTLAHSLRYDAPVRPRQLPRLRSITVPITSLDEGFT 65
Query: 5993 ------PSPRLFGGSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSL 5832
PS L GG L L E L+ T HRDTV SP++EAVA PLR S+++YPY V
Sbjct: 66 PILIARPSLPLLGGG-LKELVEMLAPTTHRDTVASPILEAVAGPLRTSIQRYPYEVPAHA 124
Query: 5831 TSFLSKRGINISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQK 5652
L + GI SG+G K HPHP HK IE ++L + W NL R+ S+VLFMK SKF KL+ +
Sbjct: 125 VPVLQRFGIEASGFGFKAHPHPVHKTIEIHLLFEHWLNLCRSPSAVLFMKQSKFEKLQHE 184
Query: 5651 DSNFHELINYRLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQL 5472
++NF L NY LT +DTTRY + P + FMHDAL Y++ +A F PH+ +L
Sbjct: 185 NANFEALANYNLTARDTTRYEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKL 244
Query: 5471 YATLVVPPESSFTETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRC 5292
+A+LVVPPES FT S FPE+Y + F S L Y+LEGNP H Y QP+ AL+WL+T+TIRC
Sbjct: 245 FASLVVPPESDFTNLSLFPEIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRC 304
Query: 5291 SDLTLSISILESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLV 5112
+L L+++ LES GPVH LLIQRG H E+ F PD LP +L Q+ R RLV
Sbjct: 305 GNLYLTVTKLESWGPVHSLLIQRGKPSVHLEHDEVSFVGPDAVALPEAAALRQDLRHRLV 364
Query: 5111 PLAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPA 4932
P Y +L YV AVRTLRTTDP GFVRTQS K E++WVT+ AWD+LQ+F T R
Sbjct: 365 PRTVYDALFVYVRAVRTLRTTDPVGFVRTQSNKAEYSWVTSAAWDNLQHFVTETAAHRVP 424
Query: 4931 VSYLTFASSFARVKHWXXXXXXXXXXXXXXXXXXAS-FASVKIAHYCSTRQVDSLILFGK 4755
+ F S+FA+ ++W + F K+A S+R + +L +F
Sbjct: 425 NRHFFFNSTFAKCRYWCSQHKLGLLTVTTPPACGLTLFTGAKLASAMSSR-LTALAVFHH 483
Query: 4754 QVVRPSCPLNSPFNLHQYFSRTAQLPPSLSASLPRFELVTSPRIVTKWSPCLARFLLSTP 4575
VV P +P + +LP L +S+P L P
Sbjct: 484 WVVPPPTLFFTP-KAPLLAIQLTRLPQPLFSSVP---------------------FLHKP 521
Query: 4574 FFRTLTTQLNFLSKKCFFAKGFPHS------KKXXXXXXXXXXXXXAYRRFMGPDAPQAM 4413
+ LNF S F + FP + + A R F+GPDAPQA+
Sbjct: 522 LGKLSLRLLNFDS---FLRRFFPDAPIPTWARLLTVAIALSPAVWLAIRHFIGPDAPQAL 578
Query: 4412 FDQYNGYFNPKPWKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQ 4233
D Y +F+P W+L + P + + P+ P P + D D+
Sbjct: 579 NDHYVRFFHPDRWQLTFERQPRFVALDRTFPW-PLPQAPEPTEPRDSDV----------- 626
Query: 4232 TEVPEHIRSLALTKPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHSASQPA 4053
P E + P P++ P A PP +
Sbjct: 627 -------------------PLETVPSPLPVVAPLPAPAT-------SVPPVD-------- 652
Query: 4052 PLESRDAVSAETSIPAEPLISKSSHPT---LSSXXXXXXXXXXXPISEAPISTXXXXXXX 3882
SA T+ EP +S S T S I P +
Sbjct: 653 -------TSATTASAVEPSLSTESLKTDEAPSGTTILQPRELKDTIFPLPAAALAVTPPE 705
Query: 3881 XXXXXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDST----PERSALILDPSGFGEVSTFA 3714
P S T++ + L+ L T +V+ P PE S L D S GEVS F
Sbjct: 706 PAPAPAEPVSASTVLGTAPLSRDLHTGHVSTPATEPGLVEPEHSPLAADSSATGEVSEFF 765
Query: 3713 QLYPDDYVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDS 3534
L+P D++ A F R+R +S A +PAM CLL AV + LW T+C + PDS
Sbjct: 766 NLHPADWIAPTATFLARRRGETISGAKYPAMDCLLAAVSAGANIPKDALWKTICSYFPDS 825
Query: 3533 LLQNSQITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGS-- 3360
+L+ I GLST H AL+ ++ +A T GV+ + +HT S
Sbjct: 826 MLREEDIAKHGLSTHHFAALAREHRLQA--TFHSAGNQFVLGVEHPSVSFHIDHTPESAT 883
Query: 3359 -PGHFFITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKN 3183
PGHF + ++ P F++ +LPFQ H+Y NV RAKN
Sbjct: 884 APGHFSLRADERQHSP---RLLGGRAADLVHAALKFKVGSAVLPFQQAHDYTTNVARAKN 940
Query: 3182 LISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPI 3003
LISNMKNGFDGV+A +DP H N ++++ ++ DG +DIA R VKLIHIAGFPGCGKSYPI
Sbjct: 941 LISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAMDIAAPRDVKLIHIAGFPGCGKSYPI 1000
Query: 3002 QRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIY 2823
+LL + ++F+I+VPT ELR+EWK + ++P++NWRI TWE LV+DEIY
Sbjct: 1001 AQLLKSRA-FKHFKIAVPTVELRNEWKGVLKVKPQDNWRISTWESSLLKSARILVIDEIY 1059
Query: 2822 KMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAW 2643
KMPRGYLDLAI DP +++VI LGDPLQG YHSTH SSNH+LSSE+ HL+PY+D+YC W
Sbjct: 1060 KMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTHSDSSNHRLSSEVKHLQPYMDYYCLW 1119
Query: 2642 TRRCPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISAS 2463
+ R P+ I FFG+ +TS PGF ++P N L NS SAA L + + TI++S
Sbjct: 1120 SHRVPQDIGTFFGIKSTSTVPGFKSYQANIPGNLRQLANSQSAAKVLNQCGFSSVTIASS 1179
Query: 2462 QGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQ 2283
QGSTYS+P IHLDRHS LS++ +LVALTRS GV+F+GD+ +L+ P LFS Q
Sbjct: 1180 QGSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSGVIFTGDKRVLE-APGGNLLFSSYFQ 1238
Query: 2282 FQGSNSPDDRYPIQTHFIEQLRGVTLISTPLKSRKLVGACPTEVKHSSTVRAFNPHTIRG 2103
+ + ++ F + ++ PLK R PT++ +
Sbjct: 1239 -------EKKVDLRALFPTEFPCRPILLEPLKRR------PTDLTGGA------------ 1273
Query: 2102 STVRDPSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPH 1923
P + E +P+ + D A +VCGDG + P+VS H
Sbjct: 1274 --------------------PFPFRDEARVFNPERRDDVFVEAAVVCGDGSSNAPQVSTH 1313
Query: 1922 FIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVF-EPVYPGEDFETLASTFLPAHDPHLRE 1746
F+ ETR P H D+PSA P + P F EPVYPGE FE +A+ FLPAHDP ++E
Sbjct: 1314 FLPETRRPLHFDLPSAKPEFAAHEAPAPLTDTFIEPVYPGETFENIAAHFLPAHDPEVKE 1373
Query: 1745 IIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVI 1566
I+FK +RS QFP+++QPF + QP +L AA HH +KDPTLL ASI KRLRFR + PY I
Sbjct: 1374 ILFKDQRSNQFPFIDQPFHVGAQPASLCAAVHHSKKDPTLLAASIEKRLRFRASDAPYQI 1433
Query: 1565 SPKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANANR 1386
+ KD++LG +LF + C+A R P+ PFDEALFA+CI LNEFAQL+SKTQ IMAN R
Sbjct: 1434 TAKDEILGSILFEAHCRAMRRDPNVRVPFDEALFAECIALNEFAQLTSKTQAVIMANHER 1493
Query: 1385 SDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRD 1206
SDPDWR++AVRIF+K+QHK N S+FG WKACQTLALMHDAV+LL GPVKKYQ + D RD
Sbjct: 1494 SDPDWRYTAVRIFAKNQHKVNSGSLFGPWKACQTLALMHDAVILLFGPVKKYQLIHDERD 1553
Query: 1205 RPAHIYVHASHTPFQMSDWCREHLSP-------------------C--EHVANDYTAFDQ 1089
RP HI+++A TP +MS+WC++ L+P C VANDYTAFDQ
Sbjct: 1554 RPEHIFIYAGRTPQEMSEWCQKFLTPRSASSPVPVMVSGDDSLIGCHPHFVANDYTAFDQ 1613
Query: 1088 SQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYN 909
SQHGEA VLE KM R++IPE LI LH +KT++TTQFGPLTCMRLTGEPGTY DN+DYN
Sbjct: 1614 SQHGEAAVLERLKMERVNIPEWLITLHIMIKTHITTQFGPLTCMRLTGEPGTYFDNSDYN 1673
Query: 908 LAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLV 729
LAVI +Y M+ + NPLW I P+L LRFK E TRY FCGY V
Sbjct: 1674 LAVIFLEYSMSG-------------QWLSENPLWPAIKPLLALRFKKEKTRYGNFCGYYV 1720
Query: 728 GPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAA 549
G +GAVR P LFAK L+A++D S+ DK+ASY TEF++GHSLG +W+L+P+E+V YQ+A
Sbjct: 1721 GAAGAVRMPRALFAKILIAVEDASIADKMASYATEFAIGHSLGDALWSLLPVEEVVYQSA 1780
Query: 548 LFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLL-KGSKT 372
+FDFFCR A RE KL+ K+G V +++ + A + Y +L+S+ RK+LL + +
Sbjct: 1781 VFDFFCRNAPRELKLLFKLGPVERSVVEAVQEFATWASYAFYRFLNSAQRKVLLTRSPQL 1840
Query: 371 YRPFDTEESLQFEGVLQHAVSIATPPPRLTGGSL 270
+ P D E Q +G L + S+ P LTGG L
Sbjct: 1841 HFPGDAPEVSQLQGELLQSFSMMQPTFPLTGGLL 1874
>gb|AFV34757.1| polyprotein [Grapevine Syrah virus 1]
Length = 2081
Score = 1456 bits (3768), Expect = 0.0
Identities = 849/2011 (42%), Positives = 1119/2011 (55%), Gaps = 61/2011 (3%)
Frame = -3
Query: 6125 SVYYSPSSQTFFYYPTMN-----PTNFPHLFRTKTTVNPPNVPR------PIKPL----- 5994
+ Y SPS+ F + + P H R V P +PR PI L
Sbjct: 6 TAYASPSAAFFALFQEQDLRCFRPLTLAHSLRYDAPVRPRQLPRLRSITVPITSLDEGFT 65
Query: 5993 ------PSPRLFGGSPLGNLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSL 5832
PS L GG L L E L+ T HRDTV SP++EAVA PLR S+++YPY V
Sbjct: 66 PILIARPSLPLLGGG-LKELVEMLAPTTHRDTVASPILEAVAGPLRTSIQRYPYEVPAHA 124
Query: 5831 TSFLSKRGINISGYGAKTHPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQK 5652
L + GI SG+G K HPHP HK IE ++L + W NL R+ S+VLFMK SKF KL+ +
Sbjct: 125 VPVLQRFGIEASGFGFKAHPHPVHKTIEIHLLFEHWLNLCRSPSAVLFMKQSKFEKLQHE 184
Query: 5651 DSNFHELINYRLTPQDTTRYPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQL 5472
++NF L NY LT +DTTRY + P + FMHDAL Y++ +A F PH+ +L
Sbjct: 185 NANFEALANYNLTARDTTRYEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKL 244
Query: 5471 YATLVVPPESSFTETSFFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRC 5292
+A+LVVPPES FT S FPE+Y + F S L Y+LEGNP H Y QP+ AL+WL+T+TIRC
Sbjct: 245 FASLVVPPESDFTNLSLFPEIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRC 304
Query: 5291 SDLTLSISILESIGPVHHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLV 5112
+L L+++ LES GPVH LLIQRG H E+ F PD LP +L Q+ R RLV
Sbjct: 305 GNLYLTVTKLESWGPVHSLLIQRGKPSVHLEHDEVSFVGPDAVALPEAAALRQDLRHRLV 364
Query: 5111 PLAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPA 4932
P Y +L YV AVRTLRTTDP GFVRTQS K E++WVT+ AWD+LQ+F T R
Sbjct: 365 PRTVYDALFVYVRAVRTLRTTDPVGFVRTQSNKAEYSWVTSAAWDNLQHFVTETAAHRVP 424
Query: 4931 VSYLTFASSFARVKHWXXXXXXXXXXXXXXXXXXAS-FASVKIAHYCSTRQVDSLILFGK 4755
+ F S+FA+ ++W + F K+A S+R + +L +F
Sbjct: 425 NRHFFFNSTFAKCRYWCSQHKLGLLTVTTPPACGLTLFTGAKLASAMSSR-LTALAVFHH 483
Query: 4754 QVVRPSCPLNSPFNLHQYFSRTAQLPPSLSASLPRFELVT---SPRIVTKWSPCLARFLL 4584
VV P +P + +LP L +S+P S R++ ++ P L RF
Sbjct: 484 WVVPPPTLFFTP-KAPLLAIQLTRLPQPLFSSVPFLHKPLGKLSLRLLNRF-PFLRRFFP 541
Query: 4583 STPF--FRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMF 4410
P + L T LS + A R F+GPDAPQA+
Sbjct: 542 DAPIPTWARLLTVAIALSPAVWLA----------------------IRHFIGPDAPQALN 579
Query: 4409 DQYNGYFNPKPWKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQT 4230
D Y +F+P W+L + P + + P+ P P + D D+
Sbjct: 580 DHYVRFFHPDRWQLTFERQPRFVALDRTFPW-PLPQAPEPTEPRDSDV------------ 626
Query: 4229 EVPEHIRSLALTKPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHSASQPAP 4050
P E + P P++ P A PP +
Sbjct: 627 ------------------PLETVPSPLPVVAPLPAPAT-------SVPPVD--------- 652
Query: 4049 LESRDAVSAETSIPAEPLISKSSHPTL---SSXXXXXXXXXXXPISEAPISTXXXXXXXX 3879
SA T EP +S S T+ S I P +
Sbjct: 653 ------TSATTVSAVEPSLSTESLKTVEAPSGTTILQPRELKDTIFPLPAAALAVTPPEP 706
Query: 3878 XXXXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDST----PERSALILDPSGFGEVSTFAQ 3711
P S T++ + L+ L T +V+ P PE S L D S GEVS F
Sbjct: 707 APAPAEPVSASTVLGTAPLSRDLHTGHVSTPATEPGLVEPEHSPLAADSSATGEVSEFFN 766
Query: 3710 LYPDDYVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSL 3531
L+P D++ A F R+R +S A +PAM CLL AV + LW T+C + PDS+
Sbjct: 767 LHPADWIAPTATFLARRRGETISGAKYPAMDCLLAAVSAGANIPKDALWKTICSYFPDSM 826
Query: 3530 LQNSQITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGS--- 3360
L+ I GLST H AL+ ++ +A T GV+ + +HT S
Sbjct: 827 LREEDIAKHGLSTHHFAALAREHRLQA--TFHSAGNQFVLGVEHPSVSFHIDHTPESATA 884
Query: 3359 PGHFFITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNL 3180
PGHF + ++ P F++ +LPFQ H+Y NV RAKNL
Sbjct: 885 PGHFSLRADERQHSP---RLLGGRAADLVHAALKFKVGSAVLPFQQAHDYTTNVARAKNL 941
Query: 3179 ISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQ 3000
ISNMKNGFDGV+A +DP H N ++++ ++ DG +DIA R VKLIHIAGFPGCGKSYPI
Sbjct: 942 ISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAMDIAAPRDVKLIHIAGFPGCGKSYPIA 1001
Query: 2999 RLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYK 2820
+LL + ++F+I+VPT ELR+EWK + ++P++NWRI TWE LV+DEIYK
Sbjct: 1002 QLLKSRA-FKHFKIAVPTVELRNEWKGVLKVKPQDNWRISTWESSLLKSARILVIDEIYK 1060
Query: 2819 MPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWT 2640
MPRGYLDLAI DP +++VI LGDPLQG YHSTH SSNH+LSSE+ HL+PY+D+YC W+
Sbjct: 1061 MPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTHSDSSNHRLSSEVKHLQPYMDYYCLWS 1120
Query: 2639 RRCPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQ 2460
R P+ I FFG+ +TS PGF ++P N L NS SAA L + + TI++SQ
Sbjct: 1121 HRVPQDIGTFFGIKSTSTVPGFKSYQANIPSNLRQLANSQSAAKVLNQCGFSSVTIASSQ 1180
Query: 2459 GSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQF 2280
GSTYS+P IHLDRHS LS++ +LVALTRS GV+F+GD+ +L+ P LFS Q
Sbjct: 1181 GSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSGVIFTGDKRVLE-APGGNLLFSSYFQ- 1238
Query: 2279 QGSNSPDDRYPIQTHFIEQLRGVTLISTPLKSRKLVGACPTEVKHSSTVRAFNPHTIRGS 2100
+ + ++ F + ++ PLK R PT++ +
Sbjct: 1239 ------EKKVDLRALFPTEFPCCPILLEPLKRR------PTDLTGGA------------- 1273
Query: 2099 TVRDPSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHF 1920
P + E +P+ + D A +VCGDG + P+VS HF
Sbjct: 1274 -------------------PFPFRDEARVFNPERRDDVFVEAAVVCGDGSSNAPQVSTHF 1314
Query: 1919 IAETRLPYHSDMPSAMPSQCSLSPPTFSAPVF-EPVYPGEDFETLASTFLPAHDPHLREI 1743
+ ETR P H D+PSA P + P F EPVYPGE FE +A+ FLPAHDP ++EI
Sbjct: 1315 LPETRRPLHFDLPSAKPEFAAHEAPAPLTDTFIEPVYPGETFENIAAHFLPAHDPEVKEI 1374
Query: 1742 IFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVIS 1563
+FK +RS QFP+++QPF + QP +L AA HH +KDPTLL ASI KRLRFR + PY I+
Sbjct: 1375 LFKDQRSNQFPFIDQPFHVGAQPASLCAAVHHSKKDPTLLAASIEKRLRFRASDAPYQIT 1434
Query: 1562 PKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANANRS 1383
KD++LG +LF + C+A R P+ PFDEALFA+CI LNEFAQL+SKTQ IMAN RS
Sbjct: 1435 AKDEILGSMLFEAHCRAMRRDPNVRVPFDEALFAECIALNEFAQLTSKTQAVIMANHERS 1494
Query: 1382 DPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDR 1203
DPDWR +AVRIF+K+QHK N S+FG WKACQTLALMHDAV+LL GPVKKYQ + D RDR
Sbjct: 1495 DPDWRHTAVRIFAKNQHKVNSGSLFGPWKACQTLALMHDAVILLFGPVKKYQLIHDERDR 1554
Query: 1202 PAHIYVHASHTPFQMSDWCREHLSP-------------------C--EHVANDYTAFDQS 1086
P HI+++A TP +MS+WC++ L+P C VANDYTAFDQS
Sbjct: 1555 PEHIFIYAGRTPQEMSEWCQKFLTPRSASSPVPVMVSGDDSLIGCHPHFVANDYTAFDQS 1614
Query: 1085 QHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNL 906
QHGEA VLE KM R++IPE LI LH +KT++TTQFGPLTCMRLTGEPGTY DN+DYNL
Sbjct: 1615 QHGEAAVLERLKMERVNIPEWLIALHIMIKTHITTQFGPLTCMRLTGEPGTYFDNSDYNL 1674
Query: 905 AVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVG 726
AVI +Y M+ + NPLW I P+L LRFK E TRY FCGY VG
Sbjct: 1675 AVIFLEYSMSG-------------QWLSENPLWPAIKPLLALRFKKEKTRYGNFCGYYVG 1721
Query: 725 PSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAAL 546
+GAVR P LFAK +A++D S+ DK+ASY TEF++GHSLG +W+L+P+E+V YQ+A+
Sbjct: 1722 AAGAVRMPRALFAKIFIAVEDASIADKMASYATEFAIGHSLGDALWSLLPVEEVVYQSAV 1781
Query: 545 FDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLL-KGSKTY 369
FDF CR A RE KL+ K+G V +++ + A + Y +L+S+ RK+LL + + +
Sbjct: 1782 FDFLCRNAPRELKLLFKLGPVERSVVEAVQEFATWASYAFYRFLNSAQRKVLLTRSPQLH 1841
Query: 368 RPFDTEESLQFEGVLQHAVSIATPPPRLTGG 276
P D E Q +G L + S+ P LTGG
Sbjct: 1842 FPGDAPEVSQLQGELLQSFSMMQPTLPLTGG 1872
>ref|YP_004300278.1| replication-associated polyprotein [Fig fleck-associated virus]
gi|326380895|emb|CAQ86912.3| replication-associated
polyprotein [Fig fleck-associated virus]
Length = 2161
Score = 1362 bits (3524), Expect = 0.0
Identities = 824/1935 (42%), Positives = 1071/1935 (55%), Gaps = 60/1935 (3%)
Frame = -3
Query: 5957 NLFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKT 5778
++ E LS T H+D TSPL+E+++ PLR SL+ Y +A+S TS L GIN+SG G+
Sbjct: 5 SILEQLSFTSHKDASTSPLMESISLPLRKSLDLYKFALSKEHTSMLQAYGINVSGLGSTP 64
Query: 5777 HPHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTT 5598
HPHPAHK IE ++L D W L + S+V+FMK SKF KL + NF L+N+ L P+D
Sbjct: 65 HPHPAHKTIETHLLFDHWSFLATSPSTVMFMKESKFNKLSKLQPNFQTLLNFHLHPKDFA 124
Query: 5597 RYPSSSTTL--PAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFTETS 5424
RY L P VFMHDALMYY+ I DLF +P ++ LYA+L++PPE+ FT+ S
Sbjct: 125 RYGPDPLPLAFPETPLVFMHDALMYYSRAQILDLFFRSPKVSHLYASLIIPPEADFTDLS 184
Query: 5423 FFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSD---LTLSISILESI 5253
P LY F F DL+Y LE NPS Y QP+S+L+WL+T+ I S L+LS+++LES
Sbjct: 185 LNPSLYQFQFLGQDLLYSLESNPSAQYTQPQSSLEWLKTTVIHSSTHPGLSLSVTVLESW 244
Query: 5252 GPVHHLLIQRGLAPKHRENTTRD---FDTPDCFLLPAPTSLSQNTRDRLVPLAAYHSLRA 5082
GP+H LLI R L + + D F TPDC LLP P SL+ +RD LVP YH+L
Sbjct: 245 GPIHSLLISR-LTKESPIPASEDRLLFKTPDCVLLPPPLSLNVPSRDLLVPAQVYHNLFL 303
Query: 5081 YVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSF 4902
YV AVRTLR TDP+GF+RTQ++KPE+AWVT+ AWD L F LLTC RP + +
Sbjct: 304 YVRAVRTLRVTDPSGFIRTQNSKPEYAWVTSNAWDHLAQFMLLTCPIRPNSHFAYLVTPL 363
Query: 4901 ARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQVVRPSCP-LN 4725
R++H + +A + + + LF ++ + P LN
Sbjct: 364 LRLRHQLKTLSRSSLNSLILAVPSSFLCLGLLARRLFSSTITQIFLFRNPLLASTTPPLN 423
Query: 4724 SP------------FNLHQYFSRTAQLPPSLSASLPRFELVTSPRIVTKWSP--CLARFL 4587
+ N F + PPS LP F++V +P+ V P FL
Sbjct: 424 NARQPVLTRLADWFLNQLPSFVQRKLSPPS--PRLPIFKVVLTPKPVQYTYPPDVPPLFL 481
Query: 4586 LSTP--FFRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAM 4413
P ++N + + F + R P +PQ +
Sbjct: 482 KFAPPRILHLFRQEVNHVPRWLF---------PITLSASALSALYLLFVRLSSPSSPQEL 532
Query: 4412 FDQYNGYFNPKPWKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQ 4233
D Y YF+PKPWKL + + F P I + D +
Sbjct: 533 SDSYRRYFHPKPWKLFLERKEHFTPEAPFFP---------------QKIENAPLLLPDQE 577
Query: 4232 TEVPEHIRSLALTKPIHFEPSEHILDP-SPILVPTKVAAKVTELITP--EAPPTEPHSAS 4062
VP + T+P P +P +P++ P A I P +A T P+ +S
Sbjct: 578 KSVPSSDSTKFSTEPRQTCPLSSQTEPLTPLVYPRSSCATAPITIAPNHQAQATTPYPSS 637
Query: 4061 QPAPLESRDAVSAETSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXX 3882
Q R + + + I S HP S+A S+
Sbjct: 638 QLCTGARRPSPTTKPEIT-------SPHPPPGQTNT----------SDASTSSVLPP--- 677
Query: 3881 XXXXXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEVSTFAQLYP 3702
VP L+ L N E S LILDP+ G V+TF+
Sbjct: 678 ---------------VPPPLSPHLS--NPRSSSSPPAENSRLILDPTAIGPVTTFSSTLS 720
Query: 3701 DDYVLGCAEFFCRKRHHGVSSAPFP-----AMP---CLLDAVGTCLGVTPVELWSTLCHH 3546
++ GCA+F R+R+ G P+P + P CLL A GV LW+ LC
Sbjct: 721 RSWLPGCADFPFRRRNPGSPHLPYPPPLASSSPHPCCLLVAFSNATGVFKETLWTLLCET 780
Query: 3545 LPDSLLQNSQITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTT 3366
PDSLL TT GLST+HLTAL +Y A V S+ YGV + HTT
Sbjct: 781 FPDSLLD----TTLGLSTEHLTALCGYYFAAATVHSEHASCV--YGVTDPVIKLTIRHTT 834
Query: 3365 GSPGHFFITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAK 3186
G PGHF + G P + F + + LP + VHNY A RAK
Sbjct: 835 GFPGHFELILLGGTP------NAFSMVSPLSQSILNFTYSKKPLPIKQVHNYVALPHRAK 888
Query: 3185 NLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYP 3006
NL SN+KN FDG+MA+ +P P++A FV+ D LD R V+L+H+AGF GCGKS P
Sbjct: 889 NLSSNLKNSFDGIMASANPLSPSTAAAAFVSLDNRLDFQPPRCVQLVHLAGFAGCGKSLP 948
Query: 3005 IQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEI 2826
IQ LL RNFR+SVPT ELR+EWK + L+ +WRI TWE LV+DEI
Sbjct: 949 IQNLLRHNQDFRNFRVSVPTTELRNEWKKDLQLKSTESWRINTWESSLLKTSPILVIDEI 1008
Query: 2825 YKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCA 2646
YKMPRGYLDL IL DP ++ VI+LGDPLQGEYHS +P SSNH LSSEI HL PY+D+YC
Sbjct: 1009 YKMPRGYLDLTILADPTIQFVIILGDPLQGEYHSLNPSSSNHHLSSEITHLLPYIDYYCM 1068
Query: 2645 WTRRCPKLIANFFGVPTTSQEPGFCRPVNHLPMN--CPILTNSHSAALTLTEAHSRACTI 2472
W+ R P+ +ANFF + ++++ PGFC HLP + PILT S S A L + RA TI
Sbjct: 1069 WSYRVPRKLANFFNISSSNKNPGFCSFSLHLPTDPSSPILTCSQSQAKILNDTGHRALTI 1128
Query: 2471 SASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQ 2292
S+SQG T P I+LDR+ LS S +VALTRS G+ F+GD + S +
Sbjct: 1129 SSSQGLTLDKPAHIYLDRNIPLLSPSNVIVALTRSRVGLCFTGDSDMFNCIRRSTPILEA 1188
Query: 2291 LTQFQGSNSPDDRYPIQTHFIEQLRGVTLISTPLKSRK-LVGACPTEVKHSSTVRAFNPH 2115
L F G + + HF L V +I++PL +R+ L G P+ HSS P
Sbjct: 1189 L--FSGR-----QIDLAHHFPSILSRVNIITSPLPARRTLFGGAPS---HSSLSSGPRPR 1238
Query: 2114 TIRGSTVRDPSYQPSFAHVVRHTS-----PAVYHP------ELNRLHPDFKGDAVRSAVI 1968
+ P+ P S PAV +P ++ + PD + D V +
Sbjct: 1239 LV-------PALVPGLNRFTSLPSAPRPGPAVANPPSLPLSQMQSVDPDSQHDVV----L 1287
Query: 1967 VCGDGIDHLPR--VSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVFEPVYPGEDFE 1794
V I+ P+ + ETR P H ++P S + SP FS F YPG D++
Sbjct: 1288 VYPQPIECEPQRAADATILPETRRPLHHELPFVELSSPNPSPALFSETAFSHSYPGVDWQ 1347
Query: 1793 TLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPAS 1614
+A FL P +EI+++G S+QFP+LN L QP TL AA H+ ++D TLLPAS
Sbjct: 1348 LIAGHFLSPFTPEEKEIMYRGTLSSQFPHLNIESRLGPQPLTLSAANHNSKRDSTLLPAS 1407
Query: 1613 IPKRLRFRRNATPYVISPKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFA 1434
I KRLRFR +A PY ISP DQLLG LLF+SLCKAY R P +E F+ LF DCI LN+++
Sbjct: 1408 IKKRLRFRPSARPYSISPSDQLLGHLLFLSLCKAYHRSPDPIE-FNFPLFVDCIELNDYS 1466
Query: 1433 QLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVL 1254
QL+SKTQ TI ANA RSDPDWRWSA RIF+K+QHK NE SIFG WKACQTLAL+HDAV+L
Sbjct: 1467 QLTSKTQKTIQANAYRSDPDWRWSAARIFAKTQHKVNEGSIFGPWKACQTLALLHDAVIL 1526
Query: 1253 LLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQHGE 1074
+ GP+KKYQR FD++DRP H+YVHA TP Q+S WC++ L+P +ANDYTAFDQSQ GE
Sbjct: 1527 IFGPIKKYQRHFDDKDRPPHLYVHAGKTPHQLSSWCQQFLTPGPRLANDYTAFDQSQGGE 1586
Query: 1073 AVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIH 894
A VLE+ KMRR+SIPE LIQLH +KT++TTQFGPLTCMRLTGEPGTYDDNTDYN A+++
Sbjct: 1587 AAVLEVLKMRRVSIPEHLIQLHKTIKTSITTQFGPLTCMRLTGEPGTYDDNTDYNTAILY 1646
Query: 893 SQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGA 714
SQ+ + P +VSGDDSLIDR PLP+P W TI +L LR K E++ + LFCGY VGP GA
Sbjct: 1647 SQFQLGDTPVLVSGDDSLIDRVPLPHPHWPTISNLLLLRPKPEISNFSLFCGYFVGPEGA 1706
Query: 713 VRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFF 534
VR+P LFAK +A D G LD LAS+L EF+VGHSLG +WNLIP + + YQ ALFD F
Sbjct: 1707 VRAPRALFAKLAIAFDLGELDKCLASFLAEFTVGHSLGDLVWNLIPPDLLIYQFALFDAF 1766
Query: 533 CRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKL---LLKGSK---- 375
CR+ SREQKL L++GE+PD ++ L SSAR+L L +G K
Sbjct: 1767 CRECSREQKLALRLGEIPDYSRLLRFDQFHQFTFASFSLLKSSARRLYLRLFRGKKLRNV 1826
Query: 374 -TYRPFDTEESLQFE 333
T+ F E + F+
Sbjct: 1827 NTFPAFHPEGAASFD 1841
>gb|AAB92649.1| replicase protein [Turnip yellow mosaic virus]
Length = 1844
Score = 1306 bits (3380), Expect = 0.0
Identities = 793/1933 (41%), Positives = 1053/1933 (54%), Gaps = 54/1933 (2%)
Frame = -3
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH
Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP
Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFSKLAQVNSNFRELKNYRLHPNDSTRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFTETSFFPEL 5409
+S LP T+FMHDALMYY P I DLFL P++ +LYA+LVVPPE+ ++ SFFP+L
Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLQKPNLERLYASLVVPPEAHLSDQSFFPKL 187
Query: 5408 YNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI
Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247
Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVP 5109
QRG P + F PD LP T L Q RDRLVP
Sbjct: 248 QRGTPPPDPSLQAPSTLMASDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307
Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929
A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V
Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367
Query: 4928 SYLTFASSFARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQV 4749
Y S A + + + + +V S+ F +++
Sbjct: 368 VYHVLQSPIASLALYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSITAFRREL 427
Query: 4748 VRPSCPLN--SPFNLHQ----YFSRTAQLPPSLSASLPRFELVTSPRIVTKWSPCLAR-- 4593
R P + F+L Q Y S + + P AS P L P + K + L R
Sbjct: 428 YRKKAPHHPLDVFHLQQHLRNYHSAISAVRP---ASPPHQRL---PHALQKAALLLLRPI 481
Query: 4592 --FLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQ 4419
L +TPFFR+ + ++ + K F + + P Q
Sbjct: 482 SPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSPPTLQ 541
Query: 4418 AMFDQYNGYFNPKPWKLRIAQGPTKCSRGQ-FLPFCPRPNSLTQDSDSDDDIFLVNAVSI 4242
A D Y+ + +P + L+ + P R FLPF P ++ D
Sbjct: 542 AQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDHS------------- 588
Query: 4241 DLQTEVPEHIRSLALTKPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHSAS 4062
+ +P S ++ +P S P+ P TP P H S
Sbjct: 589 --EASLPPAFASTSVPRPPPVASSPGAQPPTTTAAPP----------TPIEPTQRAHQNS 636
Query: 4061 QPAPLESRDAVSAETSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXX 3882
++ E+S P EP P + P P
Sbjct: 637 D---------LTLESSTPIEPPPPSIQSPDIPPSAPVLFPEINSPRRFPPQLPTTPDFEP 687
Query: 3881 XXXXXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDST-PERSALIL------DPSGFGEVS 3723
TS Q P+ ++ ++P T P S+ +L DP+ G V
Sbjct: 688 TRTSPPPSTSHQDSTDPADPLMGSHLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAIGPVL 747
Query: 3722 TFAQLYPDDYVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHL 3543
F +L+P Y A F R R + P P + CLL AV V+ LW +L L
Sbjct: 748 PFEELHPRKYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEDHLWESLQTIL 807
Query: 3542 PDSLLQNSQITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTG 3363
PDS L+N +I + GLST+HLTAL+H Y F+A V SD+ P +G I HTTG
Sbjct: 808 PDSQLRNEEINSLGLSTEHLTALAHLYNFQATVYSDRGPIL--FGPSDTIKRIDITHTTG 865
Query: 3362 SPGHF-----FITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANV 3198
P HF + S+P A P +F+++G LPF HN+ ++
Sbjct: 866 PPSHFSPGKRLLGSQPSAKRHPSDSLIRAMK--------SFKVSGNYLPFSEAHNHPTSI 917
Query: 3197 KRAKNLISNMKNGFDGVMATVDPQHPN----SAKEKFVTTDGILDIAKSRSVKLIHIAGF 3030
AKNL+SNMKNGFDGV++ +D + K+ + D LD ++ ++H AGF
Sbjct: 918 SHAKNLVSNMKNGFDGVLSLLDVSTGQRTGPTPKDAIIQIDHYLDTNPGKTTPVVHFAGF 977
Query: 3029 PGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXX 2850
GCGK+YPIQ+LL T ++FR+S PT ELR EWK +M+L +WR TWE
Sbjct: 978 AGCGKTYPIQQLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSS 1036
Query: 2849 XXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLR 2670
LV+DEIYKMPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+L SE L
Sbjct: 1037 RILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLL 1096
Query: 2669 PYLDFYCAWTRRCPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAH 2490
PY+D YC W+ R P+ IA F + + + G V+ P+LTNSH+++LT
Sbjct: 1097 PYIDMYCWWSYRIPQCIARLFRIHSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLG 1156
Query: 2489 SRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHS 2310
R+CTIS+SQG T+ P +I LD ++ LS++ LVALTRS GV F G S + S
Sbjct: 1157 YRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGS 1216
Query: 2309 AKLFSQLTQFQGSNSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGACPTEVKHSST 2136
+ +FS F S DRY F + LI++PL +R KL GA P+
Sbjct: 1217 SAMFSDA--FNNSLIIMDRY-----FPSLFPQLKLITSPLTTRSPKLNGAAPSA------ 1263
Query: 2135 VRAFNPHTIRGSTVRDPSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCGD 1956
T R P++ H+ H P Y + ++P +
Sbjct: 1264 ----------SPTHRSPNF-----HLPPHI-PLSYDRDFVTVNPTLPDQGPET------- 1300
Query: 1955 GIDHLPRVSPHFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVYPGEDFETLA 1785
R+ HF+ +RLP H D+P A+ P S+ PP A PVYPGE F++LA
Sbjct: 1301 ------RLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKA---SPVYPGEFFDSLA 1351
Query: 1784 STFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPK 1605
+ FLPAHDP REI+ K + S QFP+ ++PF L QP +LI+A+H DPTLLPASI K
Sbjct: 1352 AFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDPTLLPASINK 1411
Query: 1604 RLRFRRNATPYVISPKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLS 1425
RLRFR + P+ I+ D +LG LF SLC+AY R P+S PF+ LFA+CI+LNE+AQLS
Sbjct: 1412 RLRFRPSEAPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECISLNEYAQLS 1471
Query: 1424 SKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLG 1245
SKTQ+TI+ANA+RSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALMHD V+L+LG
Sbjct: 1472 SKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMHDYVILVLG 1531
Query: 1244 PVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLS-PCEHVANDYTAFDQSQHGEAV 1068
PVKKYQR+FDN DRP+HIY H TP Q+ DWC+EHL+ +ANDYTAFDQSQHGE+V
Sbjct: 1532 PVKKYQRIFDNADRPSHIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAFDQSQHGESV 1591
Query: 1067 VLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQ 888
VLE KM+RL+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTDYNLAVI+SQ
Sbjct: 1592 VLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQ 1651
Query: 887 YLMASIPHMVSGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAV 711
Y + S P MVSGDDSLID PLP W ++ LHLRFKLE+T +PLFCGY VGP+G +
Sbjct: 1652 YDVGSCPIMVSGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCGYYVGPAGCI 1710
Query: 710 RSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFC 531
R+P+ LF K ++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V YQ+A FDFFC
Sbjct: 1711 RNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQYQSACFDFFC 1770
Query: 530 RKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPFDTE 351
R+ + +K++L +++ I SS R + + + L + R + S+T ++
Sbjct: 1771 RRCPKHEKMLLDDSTPTLSLLERITSSPRWLTKNVMYLLPAKLRLAITSLSQTQSFPESI 1830
Query: 350 ESLQFEGVLQHAV 312
E + E L H V
Sbjct: 1831 EVSRAESELLHYV 1843
>sp|P28477.1|POLR_TYMVC RecName: Full=RNA replicase polyprotein gi|62220|emb|CAA34415.1|
unnamed protein product [Turnip yellow mosaic virus]
Length = 1844
Score = 1303 bits (3371), Expect = 0.0
Identities = 799/1923 (41%), Positives = 1055/1923 (54%), Gaps = 44/1923 (2%)
Frame = -3
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH
Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP
Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFTETSFFPEL 5409
+S LP T+FMHDALMYY P I DLFL P++ +LYA+LVVPPE+ ++ SF+P+L
Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKL 187
Query: 5408 YNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI
Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247
Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVP 5109
QRG P + F PD LP T L Q RDRLVP
Sbjct: 248 QRGTPPPDPSLQAPPTLMASDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307
Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929
A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V
Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367
Query: 4928 SYLTFASSFARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQV 4749
Y S A + + + + +V S+ F +++
Sbjct: 368 VYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSITAFRREL 427
Query: 4748 VR---PSCPLNSPFNLHQYFSRTAQLPPSLSASLPRFELVTSPRIVTKWSPCLAR----F 4590
R P PL+ H+ + + + AS P +L P + K + L R
Sbjct: 428 YRKKEPHHPLDVFHLQHRIRNYHSAISAVRPASPPHQKL---PHALQKAALLLLRPISPL 484
Query: 4589 LLSTPFFRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMF 4410
L +TPFFR+ + ++ + K F + + P QA
Sbjct: 485 LTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSPPTLQAQH 544
Query: 4409 DQYNGYFNPKPWKLRIAQGPTKCSRGQ-FLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQ 4233
D Y+ + +P + L+ + P R FLPF P ++ D + L A +
Sbjct: 545 DTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRS---EASLPPAFASTFV 601
Query: 4232 TEVPEHIRSLALTKPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHSASQPA 4053
P A + P P+ P+PI PT+ A + ++L + TEP P
Sbjct: 602 PRPPP-----AASSPGAQPPTTTAAPPTPI-EPTQRAHQNSDLALESSTSTEP----PPP 651
Query: 4052 PLESRDAVSAETSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXXXXX 3873
P+ S D + + E + P L + P+S
Sbjct: 652 PIRSPDMTPSAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLS--------------IP 697
Query: 3872 XXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEVSTFAQLYPDDY 3693
SV ++ L SL S + L DP+ G V F +L+P Y
Sbjct: 698 HQDPTDSVDPLMGSHLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRRY 757
Query: 3692 VLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNSQI 3513
A F R R + P P + CLL AV V+ LW +L LPDS L N +
Sbjct: 758 PENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEET 817
Query: 3512 TTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGSPGHF----- 3348
T GLST+HLTAL+H Y F+A V SD+ P +G I HTTG P HF
Sbjct: 818 NTLGLSTEHLTALAHLYNFQATVYSDRGPIL--FGPSDTIKRIDITHTTGPPSHFSPGKR 875
Query: 3347 FITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNM 3168
+ S+P A P +F+++G LPF HN+ ++ AKNLISNM
Sbjct: 876 LLGSQPSAKGHPSDPLIRAMK--------SFKVSGNYLPFSEAHNHPTSISHAKNLISNM 927
Query: 3167 KNGFDGVMATVDPQHPN----SAKEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQ 3000
KNGFDGV++ +D + KE+ + D LD ++ ++H AGF GCGK+YPIQ
Sbjct: 928 KNGFDGVLSLLDVSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQ 987
Query: 2999 RLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYK 2820
+LL T ++FR+S PT ELR EWK +M+L +WR TWE LV+DEIYK
Sbjct: 988 QLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYK 1046
Query: 2819 MPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWT 2640
MPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+L SE L PY+D YC W+
Sbjct: 1047 MPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWS 1106
Query: 2639 RRCPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQ 2460
R P+ IA F + + + G V+ P+LTNSH+++LT R+CTIS+SQ
Sbjct: 1107 YRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQ 1166
Query: 2459 GSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQF 2280
G T+ P +I LD ++ LS++ LVALTRS GV F G S + S+ +FS F
Sbjct: 1167 GLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDA--F 1224
Query: 2279 QGSNSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGACPTEVKHSSTVRAFNPHTIR 2106
S DRY F + LI++PL +R KL GA P+ S T R+ N H
Sbjct: 1225 NNSLIIMDRY-----FPSLFPQLKLITSPLTTRGPKLNGATPSA---SPTHRSPNFHLPP 1276
Query: 2105 GSTVRDPSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSP 1926
+ SY F V N PD + R+
Sbjct: 1277 HIPL---SYDRDFVTV-------------NSTLPDQGPET----------------RLDT 1304
Query: 1925 HFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVYPGEDFETLASTFLPAHDPH 1755
HF+ +RLP H D+P A+ P S+ PP A PVYPGE F++LA+ FLPAHDP
Sbjct: 1305 HFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKA---SPVYPGEFFDSLAAFFLPAHDPS 1361
Query: 1754 LREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATP 1575
REI+ K + S QFP+ ++PF L QP +LI+A+H DPTLLPASI KRLRFR + +P
Sbjct: 1362 TREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDPTLLPASINKRLRFRPSDSP 1421
Query: 1574 YVISPKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMAN 1395
+ I+ D +LG LF SLC+AY R P+S PF+ LFA+CI+LNE+AQLSSKTQ+TI+AN
Sbjct: 1422 HQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECISLNEYAQLSSKTQSTIVAN 1481
Query: 1394 ANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFD 1215
A+RSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALMHD V+L+LGPVKKYQR+FD
Sbjct: 1482 ASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMHDYVILVLGPVKKYQRIFD 1541
Query: 1214 NRDRPAHIYVHASHTPFQMSDWCREHLS-PCEHVANDYTAFDQSQHGEAVVLEIKKMRRL 1038
N DRP +IY H TP Q+ DWC+EHL+ +ANDYTAFDQSQHGE+VVLE KM+RL
Sbjct: 1542 NADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAFDQSQHGESVVLEALKMKRL 1601
Query: 1037 SIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMV 858
+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTDYNLAVI+SQY + S P MV
Sbjct: 1602 NIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQYDVGSCPIMV 1661
Query: 857 SGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKS 681
SGDDSLID PLP W ++ LHLRFKLE+T +PLFCGY VGP+G +R+P+ LF K
Sbjct: 1662 SGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCGYYVGPAGCIRNPLALFCKL 1720
Query: 680 LMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFCRKASREQKLV 501
++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V YQ+A FDFFCR+ R +K++
Sbjct: 1721 MIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQYQSACFDFFCRRCPRHEKML 1780
Query: 500 LKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPFDTEESLQFEGVLQ 321
L +++ I SS R + + L + R + S+T ++ E E L
Sbjct: 1781 LDDSTPALSLLERITSSPRWLTKNAMYLLPAKLRLAITSLSQTQSFPESIEVSHAESELL 1840
Query: 320 HAV 312
H V
Sbjct: 1841 HYV 1843
>gb|AFC95826.1| RNA polymerase [Watercress white vein virus]
Length = 1828
Score = 1293 bits (3347), Expect = 0.0
Identities = 788/1928 (40%), Positives = 1045/1928 (54%), Gaps = 51/1928 (2%)
Frame = -3
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++L+ T HRD P++E+ D +R S+ YP+AV L L+ GI SG G HPH
Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSITTYPWAVPKLLLPLLNSYGIPTSGLGTSHHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
AHK IE ++L W SSV+FMKPSKF KL + NF EL NYRL P D+TRYP
Sbjct: 68 AAHKTIETFLLHIHWSFQATTPSSVMFMKPSKFHKLASVNPNFKELKNYRLHPNDSTRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFTETSFFPEL 5409
++S LP+H TVFMHDALMYY P I LF + P++ +LYA+LVVPPE+ ++ SF+P+L
Sbjct: 128 TTSPDLPSHPTVFMHDALMYYHPSQILHLFQAKPNLEKLYASLVVPPEALLSDHSFYPQL 187
Query: 5408 YNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y + + L Y EG+ + Y QP AL WLR + + DL LS++ILES GPVH LLI
Sbjct: 188 YRYSTTRNTLHYVPEGHEAGSYNQPADALSWLRINELSLDDLHLSVTILESWGPVHSLLI 247
Query: 5228 QRGL-------------------APKHRENTTR-DFDTPDCFLLPAPTSLSQNTRDRLVP 5109
QRG+ + H+ F TPD LP T L Q R RLVP
Sbjct: 248 QRGVPHPDPALLSPLPLTGHDLFSSYHQPRIDLVSFRTPDAVALPEATFLDQPLRHRLVP 307
Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929
Y++L Y AVRTLRT+DPA FVR S+KPE WVT AWD+LQ FALL RP V
Sbjct: 308 RTVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPEHDWVTPTAWDNLQTFALLNVPLRPNV 367
Query: 4928 SYLTFASSFARVKHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQV 4749
Y S A +K + + + +V S+ LF K+V
Sbjct: 368 VYHVLQSPLAALKLYLKQHWRRLAATAAPILSSLTLLQHFLPLSLPLPEVKSICLFHKEV 427
Query: 4748 VRPS--CPLNSPFN----LHQYFSRTAQLPPSLSASLPRFELVTSPRIVTKWSPCLARFL 4587
R P PF L +F T ++ P+ P+ L+ R++ P LA L
Sbjct: 428 YRKRELLPSFHPFQVCPPLRTFFQETLRVKPNCRPGSPQHFLLQ--RVLNSLRP-LAPLL 484
Query: 4586 LSTPFFRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXAYRRFMGPDAPQAMFD 4407
TP + L ++ + K F + + P A QA D
Sbjct: 485 AMTPLYSRKPKPLLPHAELSWTLKSFALPWQASLALLAISELSILVHKMTSPPALQAQHD 544
Query: 4406 QYNGYFNPKPWKLRIAQGPTKCSRGQ-FLPFCPRPNSLTQDSDSDDDIFL---VNAVSID 4239
Y+ + +P + L+ + P + SR FLPF P ++ S L +NA +
Sbjct: 545 IYHRHMHPGSYVLQWERTPLRLSRSTAFLPFTPTISTAPLASSQAITAPLFSNMNARPLP 604
Query: 4238 LQTEVPEHIRSLALTKPIHFE---PSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHS 4068
T P + T+ + + P H L P P ++ +P PP PH
Sbjct: 605 PSTH-PSRPPAPTTTEVLQTQTESPPNHSLPDQPFTTPPSLSPTAHPPTSPHPPP--PHP 661
Query: 4067 ASQPAPLESRDAVSAETSIPAE------PLISKSSHPTLSSXXXXXXXXXXXPISEAPIS 3906
+S APL IPA P + +HP + AP
Sbjct: 662 SSDDAPLRPDPLAMFPELIPASNPSSSRPAVPPGTHPAPPT---------------AP-- 704
Query: 3905 TXXXXXXXXXXXXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEV 3726
T+ + P+ L L + + AV G V
Sbjct: 705 ----------------TTAARSIPPALLPPPLPSDHTAV------------------GPV 730
Query: 3725 STFAQLYPDDYVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHH 3546
F QL+P +Y A++ R R S P P + CLL AV V+ LW +L
Sbjct: 731 LPFHQLHPRNYPPNTADYHTRLRVLPPSPLPHPILNCLLTAVSLQTNVSEEHLWHSLQTI 790
Query: 3545 LPDSLLQNSQITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTT 3366
LPDS L N ++ T GLSTDHLTAL+H Y F+A V SD +G + I HT
Sbjct: 791 LPDSQLDNDEVRTFGLSTDHLTALAHLYNFQARVHSDHGQLL--FGPHDSAQRINITHTV 848
Query: 3365 G----SPGHFFITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANV 3198
G SP ++ P PP +F+++ LPF H + ++
Sbjct: 849 GPHPTSPPALDSSAVPRPNPPEPSHPLVRAMK-------SFKVSDHYLPFLEAHRHPTSI 901
Query: 3197 KRAKNLISNMKNGFDGVMATVD----PQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGF 3030
AKNL+SNMKNGFDGV++ +D P+ ++ +E+ + D LD ++V L+HIAGF
Sbjct: 902 SHAKNLVSNMKNGFDGVLSLIDVSSNPRPGHTPRERIIELDRHLDTNPEKTVPLVHIAGF 961
Query: 3029 PGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXX 2850
GCGK++PIQ+LL + ++FR+S PT ELR+EWK+SM L +WR TWE
Sbjct: 962 AGCGKTHPIQKLL-QSKLFKDFRVSCPTTELRNEWKSSMSLPGNQSWRFCTWESSLLKSS 1020
Query: 2849 XXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLR 2670
LV+DEIYKMPRGYLDL+IL DP +E+VI+LGDPLQGEYHS SSNH+L SE L
Sbjct: 1021 KILVIDEIYKMPRGYLDLSILSDPAVELVIILGDPLQGEYHSLSKDSSNHRLPSETIRLV 1080
Query: 2669 PYLDFYCAWTRRCPKLIANFFGVPTTSQEPGFCRPVNHLPMNC-PILTNSHSAALTLTEA 2493
Y+D YC W+ R P++IA F + + + + G + P++C PILTNSH+AALT
Sbjct: 1081 DYIDAYCWWSYRIPQVIARLFSITSFNYDTGIIGSIP-TPVDCHPILTNSHAAALTFNNL 1139
Query: 2492 HSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPH 2313
RACTIS+SQG T S P VI LD ++ LS S LVALTRS GV F G + +
Sbjct: 1140 GYRACTISSSQGITLSDPAVIVLDNYTRYLSASNGLVALTRSRTGVQFMGPTTYIGGTNG 1199
Query: 2312 SAKLFSQLTQFQGSNSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGACPTEVKHSS 2139
S+ +FS N + +F + LI +P++SR +L GA P+
Sbjct: 1200 SSAMFSDAVNRTPIN-------LDQYFPSLFHRLPLIHSPIQSRLLRLTGATPSS----- 1247
Query: 2138 TVRAFNPHTIRGSTVRDPSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCG 1959
P+++ + H+ H P Y + L+P + S
Sbjct: 1248 ----------------SPTFRSTNFHLPPHV-PLSYSSDFVALNPSLDPKVLDS------ 1284
Query: 1958 DGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVFEPVYPGEDFETLAST 1779
R+ HF+ +RLP H D+ S + S P + P YPGE+FE+LA+
Sbjct: 1285 -------RLETHFLPPSRLPLHFDLESPSLPPPAPSKPEPTLPKATACYPGENFESLAAF 1337
Query: 1778 FLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRL 1599
FLPAHDP REI+++ + S QFP+ ++PF L QP +LI+A+H DPTLLPASI KRL
Sbjct: 1338 FLPAHDPAQREILYRDQSSNQFPWFDRPFSLSCQPSSLISAKHSPASDPTLLPASINKRL 1397
Query: 1598 RFRRNATPYVISPKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSK 1419
RFR + P+ I+ D +LG LF SLC+AY R PS PF+ LFADCI+LNE+AQLSSK
Sbjct: 1398 RFRPSEAPHAITSDDVILGLQLFHSLCRAYNRQPSQSIPFNPELFADCISLNEYAQLSSK 1457
Query: 1418 TQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPV 1239
TQ TI+ANA+RSDPDWR + V+IF+K+QHK N+ SIFG WKACQTLALMHD V+L+LGPV
Sbjct: 1458 TQATIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGPWKACQTLALMHDFVILVLGPV 1517
Query: 1238 KKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHL-SPCEHVANDYTAFDQSQHGEAVVL 1062
KKYQR+FDN DRP HIY H TP Q+ DWC++HL S VANDYTAFDQSQHGE+VVL
Sbjct: 1518 KKYQRIFDNSDRPEHIYSHCGKTPIQLRDWCQQHLTSFTPKVANDYTAFDQSQHGESVVL 1577
Query: 1061 EIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYL 882
E KM+RL+IP LI+LH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTDYNLAVI SQY
Sbjct: 1578 EALKMKRLNIPAHLIELHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVIFSQYE 1637
Query: 881 MASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSP 702
+ S P MVSGDDSLIDR W + LHL+FKLE T PLFCGY VGP+G +R+P
Sbjct: 1638 VGSCPIMVSGDDSLIDRVLPTRSDWPDVLKRLHLKFKLEHTTNPLFCGYYVGPAGCLRNP 1697
Query: 701 ITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFCRKA 522
+ LF K ++A+DD +L D+ SYLTEF+ GH LG+ +W+L+P E V YQ+A FDFFCR
Sbjct: 1698 LALFCKLMIAVDDDALPDRRLSYLTEFTTGHRLGEPLWSLLPSELVKYQSACFDFFCRHC 1757
Query: 521 SREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPFDTEESL 342
+ +K++L +++ + SS R + + L + R + S+ ++ E
Sbjct: 1758 PKHEKMLLSDEPPTASLLDRVTSSPRWLTKNAMYLLPAKLRLAISSLSQVQSFPESPEVS 1817
Query: 341 QFEGVLQH 318
Q E L H
Sbjct: 1818 QVESELLH 1825
>ref|NP_542612.1| replicase [Grapevine fleck virus] gi|81956065|sp|Q8UZB6.1|RDRP_GFKVM
RecName: Full=RNA replication protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase; Includes: RecName: Full=Methyltransferase
gi|18073602|emb|CAC84400.1| replicase [Grapevine fleck
virus]
Length = 1949
Score = 1290 bits (3339), Expect = 0.0
Identities = 821/1988 (41%), Positives = 1046/1988 (52%), Gaps = 93/1988 (4%)
Frame = -3
Query: 6074 NPTNFPHLFR--------TKTTVNPPNVPRPIKPLPS--PRLF-GGSPLGNL---FESLS 5937
NPTNFPHLFR T+ T PP P P P S PR+F GG+P + L
Sbjct: 66 NPTNFPHLFRHHRPPPPCTRLTPRPPP-PTPAPPSASTLPRVFHGGAPPAAFQPAIDFLH 124
Query: 5936 NTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPHPAHK 5757
NTI +DT+ S ++ A+ L SL YPYA+ P S L++ GI + YG ++HPHP HK
Sbjct: 125 NTIQKDTIASSIIAALNPSLTSSLTLYPYALPPRWPSALNQAGIPATSYGHQSHPHPIHK 184
Query: 5756 NIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKD-------SNFHELINYRLTPQDTT 5598
IE ++L + W N S+V+FMK SKF KL + SNF L+N LT +D
Sbjct: 185 TIETHLLHEHWANRATLPSTVMFMKRSKFDKLRVSNAALVKSASNFLHLLNPILTARDAD 244
Query: 5597 RYPSSST--TLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFTETS 5424
RY TLP+ FMH +LMY++P IA LFL+AP + +LYA+LV+P ES+
Sbjct: 245 RYTHLPLPDTLPSTPLYFMHHSLMYFSPSQIAGLFLAAPFLERLYASLVLPAESTIGSHP 304
Query: 5423 FFPELYNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPV 5244
FFP LY + L Y LEGNPS Y QP +A WL TS+I DL L++++LES V
Sbjct: 305 FFPSLYRYRTTGEHLHYVLEGNPSSSYTQPLTATQWLTTSSITAGDLHLTVTVLESWFSV 364
Query: 5243 HHLLIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPLAAYHSLRAYVMAVR 5064
H +LI RG+ P +PD LLP P++ R RLVP SL YV AVR
Sbjct: 365 HSILITRGVRPLELPRDIISLPSPDAVLLPNPSAFDIPLRSRLVPRDVCESLFVYVRAVR 424
Query: 5063 TLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARVKHW 4884
TLRTTDPAGF+RTQS K EF WVTAEAWD L FALLT RP +L S A V+HW
Sbjct: 425 TLRTTDPAGFIRTQSNKAEFDWVTAEAWDHLAQFALLTAPVRPNTYFLPLLSPLAVVRHW 484
Query: 4883 XXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQVDSLILFGKQVVRPSCPLNSPFNLHQ 4704
+ A T V L + G P
Sbjct: 485 LFRKQRPIFATLTLLSASTAAAIPIAIARLRTHSVTQLTILGHHFTPPKI---------- 534
Query: 4703 YFSRTAQLPPSLSASLPRFELVTSP---RIVTKWSPCL---------ARFLLSTPFFRTL 4560
A+LP +L +P+ L P R WSP ARFL +T
Sbjct: 535 ----LARLPVALKRLIPKRLLPHLPSHLRPPPSWSPVFTLTFSELPKARFLTFPISGQTH 590
Query: 4559 TTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXA--YRRFMGPDAPQAMFDQYNGYFN 4386
T FA P YR F+ PQ ++++Y+ +
Sbjct: 591 TLLRQLHVPAILFAPQRPSRPLIFAGLLIGTVPVLYGAYRWFVSRFDPQTVYNRYSDLLH 650
Query: 4385 PKPWKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDIFLVNAVSIDLQTEVPEHIRS 4206
W L + P C PF P
Sbjct: 651 RPTWHLTFEREPLSCFP---TPFLPH---------------------------------- 673
Query: 4205 LALTKPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAPPTEPHSASQPAPLESRDAVS 4026
PS H + A ++ L P APP P P P S
Sbjct: 674 ----------PSSH----------PRRARRLPPL--PPAPPLPPQPPPPPPPQPSPHPPL 711
Query: 4025 AETSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXXXXXXXXXPTSVQ 3846
SIP+ P S P +S P ST T +
Sbjct: 712 FPASIPSPPPRPSSPPPPATS----------------PASTPAL------------TPIP 743
Query: 3845 TIVVPSSLTGSLDTVNVAVPDDSTPER-SALILDPSGFGEVSTFAQLYPDDYVLGCAEFF 3669
LT T+ VA PD R S L L PS F++LYP Y FF
Sbjct: 744 APKTAPPLTFPSPTL-VAEPDAPVTARPSPLPLAPS-----RPFSELYPGHYADHSGSFF 797
Query: 3668 CRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNSQITTCGLSTD 3489
++ SS P+PA+ CLL + G+ +LW+TLCH P S L ++ GLST+
Sbjct: 798 LQQPLVA-SSVPYPALDCLLVSCSAASGIPKEDLWATLCHIFPPSDL----VSDLGLSTN 852
Query: 3488 HLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGSP----GHFFITS----- 3336
HLTAL+ YQ+ LVT +G+ SAP HT P GHF +++
Sbjct: 853 HLTALAFTYQW--LVTLRSGELVQRHGLLSAPFAFEITHTPPVPPATVGHFALSAPLTPT 910
Query: 3335 -----------------------------EPGAPPPPKXXXXXXXXXXXXXXLTTF---- 3255
P AP PP + F
Sbjct: 911 SACLTGGAPSPVISGPKASASLPRARFGPRPEAPRPPLTPPGFTPITEPTPATSPFALAA 970
Query: 3254 ---RLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDG 3084
RLN + LP + VH Y + RAKNL+SN+KNGFDG+++++ + D
Sbjct: 971 LRFRLNRQPLPIRQVHAYSIALPRAKNLVSNLKNGFDGLVSSLPASDRTNLLPLIQALDH 1030
Query: 3083 ILDIAKSRS-VKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDL 2907
D +R V LIHIAGF GCGKSYPIQ+LL T R+FR+ PT ELRHEWK ++ L
Sbjct: 1031 TADFPPARPPVGLIHIAGFAGCGKSYPIQQLLATQT-FRHFRVVTPTTELRHEWKRALKL 1089
Query: 2906 EPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYH 2727
E ++WR+ TWE LV+DE+YK+PRGYLDLA+L DP +E VI+LGDPLQG Y+
Sbjct: 1090 EGPSSWRVSTWETALAKRASVLVIDEVYKLPRGYLDLALLADPTVEFVIILGDPLQGSYN 1149
Query: 2726 STHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIANFFGVPTTSQEPGFCRPVNHLPM 2547
T+P SSNH+L E +HLRP++DFYC WTRR P+L+A+FFGVPTT+ G +
Sbjct: 1150 PTNPDSSNHRLIPEEDHLRPFIDFYCLWTRRLPRLVADFFGVPTTNPTRGHLAFASLNTT 1209
Query: 2546 NCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRS 2367
P+L S S A LT RA T +ASQGSTY +PV I LDR+S+ ++N +ALVALTRS
Sbjct: 1210 QSPLLVPSDSMARALTAGGHRAITYAASQGSTYPAPVHIFLDRNSNLVTNHVALVALTRS 1269
Query: 2366 TKGVLFSGDQSILQPGPHSA-----KLFSQLTQFQGSNSPDDRYPIQTH--FIEQLRGVT 2208
GV F L P K L + S P+ F +QLRG+T
Sbjct: 1270 RSGVHFRPRAQDLPRHPQHLFTAFYKYAIDLLAHEADPSKPRPTPVDVTLLFQQQLRGLT 1329
Query: 2207 LISTPLKSRKLVGACPTEVKHSSTVRAFNPHTIRGSTVRDPSYQPSFAHVVRHTSPAVYH 2028
++ P SR GA + H+ N H +R +T P P+ + + P YH
Sbjct: 1330 ILRDPSFSRITGGATHAFLAHAPLFT--NLHGLRPTTF--PDNLPTAPTYLARSLP--YH 1383
Query: 2027 PELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSP 1848
+ V A D PRV+P F+AETRLP S++ +PSQ SP
Sbjct: 1384 -QTESYPTSALPHRVFPASTTDWSAADDHPRVNPTFVAETRLPLQSELAPTLPSQPEPSP 1442
Query: 1847 PTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQT 1668
S FE VYPG D E LA TFL A DP EI F+ S QFP++N+P + P T
Sbjct: 1443 TYHSPATFETVYPGVDGEALARTFLAATDPLELEIFFRNNWSNQFPFINRPDTVACNPLT 1502
Query: 1667 LIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVISPKDQLLGELLFISLCKAYGRHPSSV 1488
L+A H+ ++DPTLL AS+ KRLRFR + PY I+ KDQ LG +L+ SL +AY R P V
Sbjct: 1503 LVAPTHNQKQDPTLLHASLAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSPEPV 1562
Query: 1487 EPFDEALFADCINLNEFAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIF 1308
PFD LFA CI N+FAQL+SKTQ TI ANA RSDPDWR + VRIFSK+QHK NE S+F
Sbjct: 1563 -PFDPVLFASCIAENDFAQLTSKTQATIQANAFRSDPDWRHTFVRIFSKTQHKVNENSLF 1621
Query: 1307 GSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSP 1128
SWKACQTLALMHD ++L+LGPVKKYQR+ D+RDRPAH+Y+HA TP Q+S+WC+ HL+P
Sbjct: 1622 TSWKACQTLALMHDYLILVLGPVKKYQRILDSRDRPAHLYIHAGQTPHQLSEWCQNHLTP 1681
Query: 1127 CEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLT 948
H+ANDYTAFDQSQHGEAVVLE KMRR SIPEP I LH ++KTN+ QFGPLTCMR+T
Sbjct: 1682 SVHLANDYTAFDQSQHGEAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFGPLTCMRIT 1741
Query: 947 GEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKL 768
GEPGTYDDNTDYNLA++++QYL+ P +VSGDDSL+DR P NP W + P+ L+ K
Sbjct: 1742 GEPGTYDDNTDYNLAILYTQYLLHRTPVLVSGDDSLVDRVPPMNPSWPALAPLFALKPKP 1801
Query: 767 EVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMW 588
E + + LFCGY VGP+GAVR+P LFAK +AL+DGSL +K+ASY+ EFSVG SLG +W
Sbjct: 1802 ETSPFGLFCGYFVGPAGAVRAPRALFAKLAIALEDGSLPEKIASYVAEFSVGQSLGDSLW 1861
Query: 587 NLIPIEQVHYQAALFDFFCRKASREQKLVLKIGEVPD--TIISTILSSARAIARPLYAYL 414
+LIP E V YQ+A FD CR AS + KL L++GEVPD +++S + R + RPL+A L
Sbjct: 1862 SLIPPELVIYQSACFDLICRHASPQLKLALRLGEVPDWGSLLSQL--KLRFLTRPLFALL 1919
Query: 413 SSSARKLL 390
+ R ++
Sbjct: 1920 DAHTRVMV 1927
>ref|NP_067737.1| replication protein [Chayote mosaic virus]
gi|6456718|gb|AAF09240.1|AF195000_2 replication protein
[Chayote mosaic virus]
Length = 1835
Score = 1246 bits (3223), Expect = 0.0
Identities = 766/1910 (40%), Positives = 1020/1910 (53%), Gaps = 53/1910 (2%)
Frame = -3
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++LS+T HRD+ P++++V+ PLR S++ YP+ V FL + GI ISG+G+ HPH
Sbjct: 8 DALSHTTHRDSSVFPVLDSVSQPLRSSIQDYPWIVPKEHLPFLIQSGIQISGFGSTPHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
P HK +E +L + W +L R S+VLFMKPSKFR+L++ + +F +L+NYRL+ DT RYP
Sbjct: 68 PVHKVLETNLLFNHWNHLCRVPSTVLFMKPSKFRRLQEANPHFSQLLNYRLSSADTARYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFTETSFFPEL 5409
++S+ LP + FMHDALMY+ P I DLFL P + LY +LV+PPES FT+ S +P L
Sbjct: 128 TTSSILPTLTNAFMHDALMYFHPSQILDLFLQCPQLETLYCSLVIPPESDFTDFSLYPHL 187
Query: 5408 YNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y F S L Y E + + Y QP AL WL+ +I LTLSI+ LES GP+H +L+
Sbjct: 188 YQFQVTGSSLHYTPESHHAGSYNQPSLALSWLKVHSITSPHLTLSITKLESWGPLHSILV 247
Query: 5228 QRGLAPKH--------------------------RENTTRDFDTPDCFLLPAPTSLSQNT 5127
QRGL +H ++ + F TPDC LP T L Q
Sbjct: 248 QRGLPLQHPLSIHAPPPSPPQTLSLSTPSFSDFASTDSLQSFQTPDCLELPQATFLHQPL 307
Query: 5126 RDRLVPLAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTC 4947
R RLVP Y +L Y AVRTLR +DPAGFVR S KPE +WVT++AWD+LQ FALL
Sbjct: 308 RHRLVPTKVYEALFTYTRAVRTLRVSDPAGFVRMHSNKPEHSWVTSQAWDNLQTFALLNA 367
Query: 4946 NQRPAVSYLTFASSFARV-----KHWXXXXXXXXXXXXXXXXXXASFASVKIAHYCSTRQ 4782
RP Y F + ++ +HW S + + S
Sbjct: 368 PIRPPAMYSFFLNPVRKLLLVARQHWQSILLKVSPALSASVLFLLSQSHLITLPLPSVNI 427
Query: 4781 VDSLILFGKQVVRPSCPLNSPFNLHQYFSR-----TAQLPPSLSASLPRFELVTSPRIVT 4617
L F + P PL + FSR + LP SL F L SP V
Sbjct: 428 RGLLPTFSRSPAYPPNPLLDQSPSEEAFSRHLHLLLSSLPQSLPQMAKDFFLSLSP--VD 485
Query: 4616 KWSP-----CLARFLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSKKXXXXXXXXXXXXXA 4452
SP R + + P F+T LS F
Sbjct: 486 PASPPRPPALTIRTVKAIPIFQTSLPVRFLLSLTPQFL--------------------LC 525
Query: 4451 YRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSRGQ-FLPFCPRPNSLTQDSDSD 4275
R + P QA+ D Y+ +P ++L+ S+ FLP P L S +
Sbjct: 526 LNRLLSPLPLQALHDTYHSVLHPPQFRLQWKLRSFHVSKAHPFLPLSLTPPPLLSSSSTA 585
Query: 4274 DDIFLVNAVSIDLQTEVPEHIRSLALTKPIHFEPSEHILDPSPILVPTKVAAKVTELITP 4095
D+ P F P I +P P++ A + + P
Sbjct: 586 PDV-------------------------PPLFPPIHIIPEPESASPPSEAALSLPADL-P 619
Query: 4094 EAPPTEPHSASQPAPLESRDAVSAETSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEA 3915
+ T P PAP S + A ++ P P ++ P+L+ S
Sbjct: 620 QPNLTAPSLTPTPAPT-SEASSQATSATPLPPAVTSIDSPSLTQA------------SIP 666
Query: 3914 PISTXXXXXXXXXXXXXXPTSVQTIVVPSSLT--GSLDTVNVAVPDDSTPERSALILDPS 3741
P S + T++ +LT S + ++ +P + L DPS
Sbjct: 667 PQSAQTGCPSPSEILFPESSGSPTVLPTGALTFSNSPSSPQTSLQSKKSPPPTPLESDPS 726
Query: 3740 GFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWS 3561
G V F++ +P Y A F R R S PA+ CLL+A + + +LW
Sbjct: 727 CTGPVVPFSEAFPAYYYSDTASFHTRVRCLPPSQIAVPALCCLLEAFSSETKLPVDDLWL 786
Query: 3560 TLCHHLPDSLLQNSQITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIR 3381
TL HLPDSLL NS+I+T GLSTD LTAL FY + + ++ +G+ ++ I
Sbjct: 787 TLRSHLPDSLLSNSEISTYGLSTDLLTALCFFYHLRCSLHTNSGVLL--FGIQNSEQHIC 844
Query: 3380 FNHTTGSPGHFFITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRAN 3201
HT+G P H+ PGA F+ LPF+ H + +
Sbjct: 845 ITHTSGPPAHY----SPGARLNGSAPRSNPLNSPLVRAALRFKYQNHFLPFERAHAFTTS 900
Query: 3200 VKRAKNLISNMKNGFDGVMATVDPQHPN--SAKEKFVTTDGILDIAKSRSVKLIHIAGFP 3027
+ AKNLISNMKNGFDG+++++D + S +EK D ++D ++R+V +IHIAGF
Sbjct: 901 LPHAKNLISNMKNGFDGILSSLDSPSSSGPSPREKLFAIDALIDSTQARTVPIIHIAGFA 960
Query: 3026 GCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXX 2847
GCGK++PIQ+LL T P R+FR+S PT +LR EWK M P N WR TWE
Sbjct: 961 GCGKTHPIQQLLRT-PLFRDFRVSCPTTDLRSEWKDDMKPSPPNVWRFSTWESSLLKTSS 1019
Query: 2846 XLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRP 2667
LV+DE+YK+P GYLDL+IL DP +++VI+LGDPLQGEYHST SSN +L SEI L P
Sbjct: 1020 VLVIDEVYKLPSGYLDLSILSDPAIQLVILLGDPLQGEYHSTSLSSSNSRLESEITRLSP 1079
Query: 2666 YLDFYCAWTRRCPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHS 2487
++D YC W+ R P+ +A V + + GF R P N L NS + A L
Sbjct: 1080 FIDCYCWWSYRIPQSVAEVLDVTSFNPTRGFIRASLTHPQNSKNLVNSIATANALQHMGH 1139
Query: 2486 RACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSA 2307
A TIS+SQG T+S I LDR+++QLS + LV LTRS GV+F G+ + +
Sbjct: 1140 HAMTISSSQGVTFSEANTILLDRNTNQLSPNTCLVGLTRSRTGVIFVGNLHLASNSFGTC 1199
Query: 2306 KLFSQLTQFQGSNSPDDRYPIQTHFIEQLRGVTLISTPLKSRKLVGACPTEVKHSSTVRA 2127
+FS+ S P D + LR + T K+R L G + V H + +
Sbjct: 1200 YIFSRAL----SGQPIDYASLFPRVFPTLRRIFSPITSRKTRLLGGF--SLVSHDTNLPL 1253
Query: 2126 FNPHTIRGSTVRDPSYQPSFAHVVRHTSPAVYHP-ELNRLHPDFKGDAVRSAVIVCGDGI 1950
F S P S + V TS V+ E +RL
Sbjct: 1254 FARLLAFRSLSLPPHIPVSHSSDVLITSAQVFSTLEESRL------------------ST 1295
Query: 1949 DHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVFEPVYP------GEDFETL 1788
HLP TRLP H D+P A P SPP A F + P GE F++L
Sbjct: 1296 LHLP--------PTRLPLHYDLPPAAP-----SPPPAPAVDFSGLTPISHAFAGEFFDSL 1342
Query: 1787 ASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIP 1608
A+ FLP HDP RE +S QFP+++ PF+L QP +LIAA+H DP LL AS+
Sbjct: 1343 AAFFLPPHDPQTREHPDPSIQSNQFPWVDLPFELSCQPSSLIAAKHSPSSDPLLLSASLS 1402
Query: 1607 KRLRFRRNATPYVISPKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQL 1428
KRLRFR + PY I+P DQLLGE LF SL +AY R + PF LFA+CI NE+AQL
Sbjct: 1403 KRLRFRPSENPYSITPMDQLLGEHLFASLQRAYKRPVEQILPFHPELFAECICANEYAQL 1462
Query: 1427 SSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLL 1248
SSKTQ TI+AN RSDPDWR++AV+IF+KSQHK N+ SIFGSWKACQTLALMHD V+L+L
Sbjct: 1463 SSKTQATIVANHTRSDPDWRFTAVKIFAKSQHKVNDGSIFGSWKACQTLALMHDYVILVL 1522
Query: 1247 GPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQHGEAV 1068
GPVKKYQRLFD+RDRP ++Y+H TP +S +C H P + VANDYT+FDQSQ GEAV
Sbjct: 1523 GPVKKYQRLFDDRDRPPNLYIHRGQTPLDLSHFCSSHSLPSKFVANDYTSFDQSQRGEAV 1582
Query: 1067 VLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQ 888
VLE+ KM+RLSIP L LH +LKTNV TQFGPLTCMRLTGEPGTYDDNTDYNLA I SQ
Sbjct: 1583 VLELLKMQRLSIPSHLQALHLFLKTNVRTQFGPLTCMRLTGEPGTYDDNTDYNLATIFSQ 1642
Query: 887 YLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVR 708
Y + P VSGDDS+I +P +P W + PML+LRFK E TRYPLFCGY + P GA+R
Sbjct: 1643 YAITDQPVFVSGDDSVIASEPPQSPSWRDVLPMLNLRFKTEHTRYPLFCGYYLTPQGAIR 1702
Query: 707 SPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFCR 528
+P+ LFAK ++ +DDGS+ DK+ SY++EFSVGHS G + + +P + Y +A FDFFCR
Sbjct: 1703 NPLALFAKLMICVDDGSVKDKILSYISEFSVGHSAGDTILHHLPSHLLPYHSACFDFFCR 1762
Query: 527 KASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378
A+ QKL L + +P++I +++ R +R L++ L AR L+ S
Sbjct: 1763 FATPSQKLTLSLDPIPESIWMSLIHKIRWASRSLFSQLPQKARDYLISRS 1812
>ref|NP_044328.1| replicase [Kennedya yellow mosaic virus]
gi|548564|sp|P36304.1|POLR_KYMVJ RecName: Full=RNA
replicase polyprotein gi|221971|dbj|BAA00532.1| unnamed
protein product [Kennedya yellow mosaic virus]
Length = 1874
Score = 1001 bits (2588), Expect = 0.0
Identities = 554/1169 (47%), Positives = 726/1169 (62%), Gaps = 17/1169 (1%)
Frame = -3
Query: 3788 PDDSTPERSALILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSSAPFPAMPCLL 3609
P T +S L+ DP+ G +F+ LYP D+ A F R R + P P CLL
Sbjct: 753 PKPPTEVQSPLMADPTCVGPAVSFSSLYPRDFFPNTASFLTRLRLSPPTPLPMPKNNCLL 812
Query: 3608 DAVGTCLGVTPVELWSTLCHHLPDSLLQNSQITTCGLSTDHLTALSHFYQFKALVTSDQE 3429
AV L + P LW++L LPDSLL NS+I + G+STD LTALSH + F+A+V S++
Sbjct: 813 TAVAPSLHINPHRLWTSLQEVLPDSLLSNSEIDSVGMSTDLLTALSHLFNFQAVVHSERG 872
Query: 3428 PTPHPYGVDSAPTTIRFNHTTGSPGHFFITSEPGAPPPPKXXXXXXXXXXXXXXLTT--- 3258
+G+ SA T I HT G P H+ PPPK L
Sbjct: 873 DIL--FGLQSAKTVIHIYHTNGPPAHY--------SPPPKIIGSNSPPSSQQHPLEQAAL 922
Query: 3257 -FRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDP----QHPNSAKEKFVT 3093
F+ G LPF + H++ +V+ AKNLISNMKNGFDGVM+T++P Q +S +EKF+
Sbjct: 923 RFKYQGSHLPFSSFHSFTTSVQHAKNLISNMKNGFDGVMSTIEPSIRHQPGHSPREKFIA 982
Query: 3092 TDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASM 2913
D ++D+A+ ++V + H+AGF GCGK+ P+Q LL T P +FR+S PT ELR+EWK M
Sbjct: 983 LDAMIDLARPKTVSMFHLAGFAGCGKTKPLQSLLSTRP-FHSFRVSTPTTELRNEWKKDM 1041
Query: 2912 DLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGE 2733
+L +R TWE LV+DEIYK+PRGYLDL IL DP LE+VI+LGDPLQGE
Sbjct: 1042 NLPASQAFRFCTWESSLLKQTKILVIDEIYKLPRGYLDLCILADPCLELVIILGDPLQGE 1101
Query: 2732 YHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIANFFGVPTTSQEPGF----CRP 2565
YHST P SSNH+L SE L P++D YC WT R P IA+ F VP+ ++ G R
Sbjct: 1102 YHSTSPHSSNHQLQSETTRLLPFIDHYCWWTYRVPSHIADLFSVPSFNRSEGHYQMAVRT 1161
Query: 2564 VNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMAL 2385
+ L NS + A + + A TISASQG T+ + V I LD+HS LS S L
Sbjct: 1162 ADSYTPGHFNLVNSVATANAVIQLGFPATTISASQGVTHHNRVTILLDKHSRLLSPSNTL 1221
Query: 2384 VALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQGSNSPDDRYPIQTHFIEQLRGVTL 2205
VALTRST GV F GD L +S+ +FS+ Q N + + F + L
Sbjct: 1222 VALTRSTVGVEFLGDIGSLSGTNNSSDMFSRAIYRQPIN-------LSSSFPRIFHLLPL 1274
Query: 2204 ISTPL--KSRKLVGACPTEVKHSSTVRAFNPHTIRGSTVRDPSYQPSFAHVVRHTSPAVY 2031
++ P+ +S +L+G+ HS H R + + P + P Y
Sbjct: 1275 LNKPISRRSTRLIGS------HSPIF-----HNPRLTNIHLPPH-----------IPTSY 1312
Query: 2030 HPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLS 1851
+ +P F+G A PR+ HF+ TRLP S++ A SQ +
Sbjct: 1313 SQDFVVSNPIFQGQAD--------------PRLDTHFLPPTRLPLQSELLPAQLSQTTKP 1358
Query: 1850 PPTFSAPV-FEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQP 1674
+F+ F PVYPGE+FE LA+ FLPAHDP L+E+ + + SAQFP+ ++PF L QP
Sbjct: 1359 TDSFTNNTPFTPVYPGENFENLAAFFLPAHDPELKEVTRRDQTSAQFPWFDRPFSLSCQP 1418
Query: 1673 QTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVISPKDQLLGELLFISLCKAYGRHPS 1494
+LIAA+H +DPTLLP SIPKRLRFR++ P+V+S D LLG LF +LCKAY R+P+
Sbjct: 1419 SSLIAAKHSPSQDPTLLPFSIPKRLRFRKSDNPHVLSAIDVLLGNQLFFNLCKAYRRNPT 1478
Query: 1493 SVEPFDEALFADCINLNEFAQLSSKTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEAS 1314
V PF+ ALFA+CI LN++AQLSSKTQ T++AN +RSDPDWR +AV+IF+KSQHK N+AS
Sbjct: 1479 HVGPFNPALFAECIALNDYAQLSSKTQATLVANHSRSDPDWRHTAVKIFAKSQHKVNDAS 1538
Query: 1313 IFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHL 1134
IFG+WKACQTLALMHD V+L LGPVKKYQR+FD DRP H+Y H +P +S WC+ HL
Sbjct: 1539 IFGNWKACQTLALMHDFVILSLGPVKKYQRIFDALDRPPHLYTHCGKSPADLSAWCQTHL 1598
Query: 1133 SPCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMR 954
+ + NDYTAFDQSQHGE+V+LE KM+RLSIP LIQLH +LKTNV TQFGPLTCMR
Sbjct: 1599 TGQIKLTNDYTAFDQSQHGESVILEALKMKRLSIPSHLIQLHVHLKTNVATQFGPLTCMR 1658
Query: 953 LTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRF 774
LTGEPGTYDDN+DYNLAVIHSQ+ M IP MVSGDDSLIDRQP W +LHLRF
Sbjct: 1659 LTGEPGTYDDNSDYNLAVIHSQFDMKDIPVMVSGDDSLIDRQPPLAQSWEATKRLLHLRF 1718
Query: 773 KLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQE 594
K E T +PLFCGY G +GA+R+P+ LF+K ++A+DD ++ D+ SYLTEFS GH LG
Sbjct: 1719 KTEKTTHPLFCGYYTGSAGAIRNPLALFSKLMIAIDDEAIHDRRLSYLTEFSTGHQLGDA 1778
Query: 593 MWNLIPIEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYL 414
+W L+P YQ+A FD+FCR + +K +L E+PD++IS I SS + +++ + L
Sbjct: 1779 LWTLLPESTQIYQSACFDYFCRHSPPHEKALLSSFELPDSVISKISSSTKWLSKNAFYAL 1838
Query: 413 SSSARKLLL--KGSKTYRPFDTEESLQFE 333
S RK ++ + S ++ L+FE
Sbjct: 1839 PSKIRKAVIASRHSSSFPENPDVSQLEFE 1867
Score = 328 bits (840), Expect = 3e-86
Identities = 179/376 (47%), Positives = 224/376 (59%), Gaps = 21/376 (5%)
Frame = -3
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++L++T H+D P++E+V D L DSL+ YP+ V L FL K GI I+ +G+ HPH
Sbjct: 8 DALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDLQPFLLKSGIPINSFGSSPHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
PAHK +E ++L W +L SSVLFMKP KF KL++K+ F L NYRLTP D+ R+P
Sbjct: 68 PAHKTLETHLLFTHWMHLCTQPSSVLFMKPQKFMKLQRKNKFFQHLHNYRLTPTDSVRFP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFTETSFFPEL 5409
S+S LP VFMHDALMYY P I LF P +T L+ +LV PPES FT S P+L
Sbjct: 128 STSPHLPNTPFVFMHDALMYYQPEQILHLFHQVPQLTNLFCSLVTPPESHFTHLSLMPDL 187
Query: 5408 YNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y F L Y EG+ + Y QP +AL WL+ ++I +L LSI+ILES GP+H +LI
Sbjct: 188 YTFTLKGQTLHYTPEGHSAGSYNQPITALSWLKINSILSPNLNLSITILESWGPLHSILI 247
Query: 5228 QRGLA---PK-------------HRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPLAAY 5097
QRGL PK E F P LP T LSQ R RLVP + Y
Sbjct: 248 QRGLPLPDPKLLVRSLPPFSRSPDPETDLVSFQVPKSVELPQATFLSQPLRHRLVPESVY 307
Query: 5096 HSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLT 4917
++L Y AVRTLR +DPAGFVRTQS KPE WVT AWD+LQ FALL C RP V Y
Sbjct: 308 NALFTYTRAVRTLRVSDPAGFVRTQSNKPEHKWVTPSAWDNLQTFALLNCPLRPNVVYHV 367
Query: 4916 FASSFARVK-----HW 4884
+ ++K HW
Sbjct: 368 LLNPLQKMKLYFSQHW 383
>ref|YP_007517180.1| viral replication protein [Andean potato latent virus]
gi|452883301|gb|AGG15964.1| viral replication protein
[Andean potato latent virus]
Length = 1831
Score = 993 bits (2566), Expect = 0.0
Identities = 571/1292 (44%), Positives = 759/1292 (58%), Gaps = 13/1292 (1%)
Frame = -3
Query: 4193 KPIHFEPSEHILDPSPILVPTKV-AAKVTELITPEAPPTEPHSASQ--PAPLESRDAVSA 4023
+P+H + + L P L+P + + P PP P A + P P S S
Sbjct: 577 QPMHVDSPQPFL---PYLLPAPTNPSTFPQTPLPVTPPISPPQAQRATPPPAPSPSPSSP 633
Query: 4022 ETSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPISTXXXXXXXXXXXXXXPTSVQT 3843
S P L+S S+ P S+ +S+ + T T
Sbjct: 634 AESEPPIGLVSSSTLPPSSTTHQTPPPLPN--LSDDLLQVIPPSSDTPPSIPPDSTVTYT 691
Query: 3842 IVVPSSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEVSTFAQLYPDDYVLGCAEFFCR 3663
+ S++ T V + P L+ DP+ G+V F +P Y A F R
Sbjct: 692 GALNHSIS---PTPFVPQHLPAEPIIPPLMADPTCAGDVIPFHNAFPGLYFSNTASFPTR 748
Query: 3662 KRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHHLPDSLLQNSQITTCGLSTDHL 3483
R S+ P PA+ CLL+ + LW +LC LPD LL N +I T GLSTD L
Sbjct: 749 IRILPSSNLPVPALNCLLETFSQLTHYPVLSLWQSLCSMLPDCLLDNEEIRTVGLSTDLL 808
Query: 3482 TALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTTGSPGHF-----FITSEPGAPP 3318
TAL Y + ++ + HPYG+ ++ T+I ++ G P HF FI S PG+ P
Sbjct: 809 TALCFTYHIQCILHTPSGN--HPYGMPASSTSIEIDYLPGPPRHFSPHNRFIASAPGSNP 866
Query: 3317 PPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMAT 3138
+ F+ NG LPF H + +++ AKNLISNMKNGFDG+M +
Sbjct: 867 SSEPLVREALR---------FKHNGHFLPFHQAHLHSVSLQHAKNLISNMKNGFDGIMHS 917
Query: 3137 VDPQHPNSA--KEKFVTTDGILDIAKSRSVKLIHIAGFPGCGKSYPIQRLLLTAPRARNF 2964
+ +S K++ +T D I D+A+ R+V +IHIAGF GCGK++PIQ+LL + P ++F
Sbjct: 918 ISTSSSSSPSPKQQILTLDSICDVAQPRTVPVIHIAGFAGCGKTHPIQKLLASKP-FKDF 976
Query: 2963 RISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILM 2784
RIS PT ELR EWK MD P N WR TWE L++DE+YK+PRGYLDL+IL
Sbjct: 977 RISTPTNELRSEWKRDMDPSPSNLWRFSTWESSLFKHSSVLIIDEVYKLPRGYLDLSILA 1036
Query: 2783 DPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIANFFG 2604
DP+L++V +LGDPLQGEYHST+P SSN +L SEI+ R Y+D YC WT R PKL+A F
Sbjct: 1037 DPNLKLVFILGDPLQGEYHSTNPHSSNIRLPSEIDRFRRYIDCYCWWTYRLPKLVAELFQ 1096
Query: 2603 VPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHL 2424
+PT S E G V+ P L NS S A +L + A TIS+SQG T+ I L
Sbjct: 1097 IPTFSSEQGSIIAVSSHPPGSKNLVNSTSTATSLQQMGHHAITISSSQGITFPEINTILL 1156
Query: 2423 DRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQGSNSPDDRYPI 2244
DRH++ LS + LVA+TRS KG F G+ + ++ +FSQ Q N
Sbjct: 1157 DRHTNLLSPNNCLVAMTRSRKGFAFVGNLHLASNSFGTSYMFSQALARQPIN-------- 1208
Query: 2243 QTHFIEQLRGVTLISTPLKSRKLVGACPTEVKHSSTVRAFNPHTIRGSTVRDPSYQPSFA 2064
+ + L+ P+ +R L H ST+ N H A
Sbjct: 1209 MANCFHSFHQLLLLHHPITTRNL----RFVAGHQSTLP--NVHK---------------A 1247
Query: 2063 HVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDM 1884
H TS + P + D D + + +V GD ID PR+ + + TRLP H+++
Sbjct: 1248 HQKLSTSGKLSLPP--HIPIDHAEDFIITNPVVFGDAID--PRLPTNHLPPTRLPLHTEL 1303
Query: 1883 PSAMPSQCSLSPP--TFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFP 1710
PS S P F+ P F GE FE LA+ FLPAHDP L+EI++ + S QFP
Sbjct: 1304 LGTNPSSTDSSSPDLLFNTP-FSLGLSGETFENLAAHFLPAHDPSLKEILYHDQSSLQFP 1362
Query: 1709 YLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKRLRFRRNATPYVISPKDQLLGELLF 1530
+L++PF L QP +LIAA H +D TLLPASI KRLRFR + PY I+ DQLLG+ LF
Sbjct: 1363 WLDRPFSLSCQPSSLIAATHSPSQDSTLLPASIKKRLRFRESDQPYQITANDQLLGQHLF 1422
Query: 1529 ISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANANRSDPDWRWSAVRI 1350
SLCKAYGR P S PF+ LFA+CI+LNE+AQLSSKT+ TI+ANA RSDPDWR + V+I
Sbjct: 1423 SSLCKAYGRSPLSSVPFNPVLFAECISLNEYAQLSSKTRATIVANAQRSDPDWRHTTVKI 1482
Query: 1349 FSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPAHIYVHASHT 1170
F+K+QHK N+ SIFGSWKACQTLALMHD ++L+LGPVKKYQR+ D++DRP +Y+H HT
Sbjct: 1483 FAKAQHKVNDGSIFGSWKACQTLALMHDYIILILGPVKKYQRVIDSKDRPPQLYIHCGHT 1542
Query: 1169 PFQMSDWCREHLSPCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTN 990
P Q+S WC+ HLS ++ANDYT+FDQSQHGEAVVLE+ KM+RL+ P + LH +LKTN
Sbjct: 1543 PHQLSSWCQTHLSGQTYLANDYTSFDQSQHGEAVVLELLKMQRLNFPSFFLDLHLHLKTN 1602
Query: 989 VTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPL 810
V TQFGPLTCMRLTGEPGTYDDN+DYNLAVI S+YL+ S P M+SGDDS+I P +P
Sbjct: 1603 VQTQFGPLTCMRLTGEPGTYDDNSDYNLAVIFSKYLIHSHPIMISGDDSVICGNPSIHPS 1662
Query: 809 WITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYL 630
W +I P+LHL+FK E +PLFCGY V P GAVR+P LFAK ++ +DD +LDDK+ SYL
Sbjct: 1663 WSSIEPILHLKFKTETNSHPLFCGYYVSPLGAVRNPFALFAKLMICIDDCTLDDKILSYL 1722
Query: 629 TEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSS 450
+EFSVGH+LG + ++IP + YQ+A DFFCR + QKL+L + +P++ I ++
Sbjct: 1723 SEFSVGHTLGDSLIHVIPSAILPYQSACHDFFCRNCTPSQKLLLSLDPLPESTILRLILK 1782
Query: 449 ARAIARPLYAYLSSSARKLLL-KGSKTYRPFD 357
+ ++ ++ L S AR LL+ KGS PFD
Sbjct: 1783 IKWASKAFFSLLPSKARDLLVSKGSLQSMPFD 1814
Score = 331 bits (848), Expect = 3e-87
Identities = 177/407 (43%), Positives = 231/407 (56%), Gaps = 52/407 (12%)
Frame = -3
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
E+L++T+HRD T+P++ +V +PL+ SL +YP+ + + FL GI SG G HPH
Sbjct: 8 EALNSTVHRDAATNPILNSVVEPLQQSLVQYPWLLPKEVLPFLLSSGIPNSGLGTTPHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
P HK IE ++L + W L S+++FMKP KF+KL ++NF L NYRLTP DTTRYP
Sbjct: 68 PTHKVIETFLLYNHWSCLANQPSTIMFMKPQKFQKLRNLNNNFTHLCNYRLTPADTTRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFTETSFFPEL 5409
++S LP VFMHDALMY+ P I DLFL++P I LY +L+VPPES FT+ S P L
Sbjct: 128 TTSLHLPNTPVVFMHDALMYFNPAQILDLFLNSPIINSLYCSLIVPPESDFTDLSLQPIL 187
Query: 5408 YNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y F L Y EG+ + Y QP ALDWL+ +I +L LS++ L+S GPVH +LI
Sbjct: 188 YQFSISGQTLHYVPEGHNAGSYNQPLHALDWLKIHSILSRELNLSVTKLDSWGPVHSILI 247
Query: 5228 QRGLAPKH-----------------------------------------------RENTT 5190
QR L P H +
Sbjct: 248 QRNLPPLHPARQSPINHSLSSLFPQHNRAPRALRSQRDSSQHLQSALQALFPPPQAAHAL 307
Query: 5189 RDFDTPDCFLLPAPTSLSQNTRDRLVPLAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKP 5010
F P+C LP+ T L+Q R RLVPL Y++L Y AVRTLRT+DPAGFVRTQS K
Sbjct: 308 ASFKIPECLELPSATFLNQPLRHRLVPLQVYNALFTYTRAVRTLRTSDPAGFVRTQSNKA 367
Query: 5009 EFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARVK-----HW 4884
E++WVT AWD+LQ FAL+ RP V Y F + F ++K HW
Sbjct: 368 EYSWVTPNAWDNLQTFALMNAPIRPRVFYEFFLNPFQKLKLHFRQHW 414
>ref|YP_002048673.1| replicase-associated protein RP [Diascia yellow mottle virus]
gi|194295001|gb|ACF40325.1| replicase-associated protein
RP [Diascia yellow mottle virus]
Length = 1790
Score = 991 bits (2561), Expect = 0.0
Identities = 600/1368 (43%), Positives = 761/1368 (55%), Gaps = 16/1368 (1%)
Frame = -3
Query: 4433 PDAPQAMFDQYNGYFNPKP----WKLRIAQGPTKCSRGQFLPFCPRPNSLTQDSDSDDDI 4266
P + Q++ D Y+ + +P W L PT R FLP P + S
Sbjct: 496 PQSVQSLHDGYHTHLHPSEFNLSWPLESFHVPT---RRNFLP----PGMASNPSPPPTPF 548
Query: 4265 FLVNAVSIDLQTEVPEHIRSLALTKPIHFEPSEHILDPSPILVPTKVAAKVTELITPEAP 4086
V+ T P P EP L PS L P TP
Sbjct: 549 -----VAPPFATNSPH---------PPPPEPPTASLGPSQPLAPHHP--------TPPTN 586
Query: 4085 PTEPHSASQPAPLESRDAVSAETSIPAEPLISKSSHPTLSSXXXXXXXXXXXPISEAPIS 3906
P P S+S P L +ETS P S P+ SS S
Sbjct: 587 PPAPASSSAPPELSLSQNPRSETSSPPS---QPSPSPSQSSPLPAGPPPHPSDGSCRCAD 643
Query: 3905 TXXXXXXXXXXXXXXPTSVQTIVVPSSLTGSLDTVNVAVPDDSTPERSALILDPSGFGEV 3726
+ PS L +N + P P S L+ DPS G V
Sbjct: 644 CQPEHQHLRSINEFGALNQNPAPTPSPL------LNRSEPKADLPG-SDLLSDPSCVGPV 696
Query: 3725 STFAQLYPDDYVLGCAEFFCRKRHHGVSSAPFPAMPCLLDAVGTCLGVTPVELWSTLCHH 3546
F L+P Y F R+R SSAP PA CLL ++ LGV LW+ LC
Sbjct: 697 VEFECLFPGVYHNSNGTFLTRQRAQASSSAPLPAKRCLLTSISPQLGVPEATLWNYLCEM 756
Query: 3545 LPDSLLQNSQITTCGLSTDHLTALSHFYQFKALVTSDQEPTPHPYGVDSAPTTIRFNHTT 3366
LPDSLL N +I GLSTDHLTAL+ F+ ++ + T PY A T ++
Sbjct: 757 LPDSLLDNPEIRNYGLSTDHLTALASRLNFECVIHTGH--TTLPYSCVGASTRVQITFHP 814
Query: 3365 GSPGHF-----FITSEPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRAN 3201
G P HF S PG+ P F+LNG+ LPF H ++ +
Sbjct: 815 GPPKHFSPNIRLSASAPGSNPSKSPLVRAALR---------FQLNGDFLPFMNSHKHKVS 865
Query: 3200 VKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSVKLIHIAGFPGC 3021
V AKNL+SNMKNGFDG+ + + S K+K + D +D+A R V +IHIAGFPGC
Sbjct: 866 VPHAKNLVSNMKNGFDGITSQLSESSGRSPKQKLLELDATIDVAFPREVDVIHIAGFPGC 925
Query: 3020 GKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXL 2841
GKS+P+Q+LL T R+FR+SVPT ELR EWK+ M L WR+ TWE L
Sbjct: 926 GKSHPVQKLLQTKA-FRHFRLSVPTNELRTEWKSDMSLPESEIWRLCTWETSLFKSSSIL 984
Query: 2840 VVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYL 2661
V+DEIYK+PRGYLDLA+L DP +VI+LGDPLQGEYHS+HP SSN++L SE + L Y+
Sbjct: 985 VIDEIYKLPRGYLDLALLADPSTSLVILLGDPLQGEYHSSHPSSSNNRLESETSRLSKYI 1044
Query: 2660 DFYCAWTRRCPKLIANFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRA 2481
D YC WT RCP+ +A+ FGV T + E GF R P P L NS + A T+ A
Sbjct: 1045 DCYCWWTYRCPRAVADLFGVKTFNTEQGFIRGELSHPQGLPNLVNSIATATTMQNLGHHA 1104
Query: 2480 CTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKL 2301
TIS+SQG TYSSP I LDRHS+ LS VALTRS KG++F G+ ++ +
Sbjct: 1105 LTISSSQGMTYSSPTTILLDRHSTLLSPQNCFVALTRSRKGIIFIGNMYQASGYFGTSYM 1164
Query: 2300 FSQLTQFQGSNSPDD---RYPIQTHFIEQLRGVTLISTPLKSR--KLVGACPTEVKHS-S 2139
F+Q + SP D +P+ + LI P+KSR +LV P + S S
Sbjct: 1165 FTQAL----TGSPVDLMCAFPL-------YHTLPLIFDPIKSRRQRLVAGDPLPISTSES 1213
Query: 2138 TVRAFNPHTIRGSTVRDPSYQPSFAHVVRHTSPAVYHPELNRLHPDFKGDAVRSAVIVCG 1959
+R + R P + P+ D+ D S+ +V
Sbjct: 1214 AIRNYG---------RLPPHIPT----------------------DYAKDCFVSSQVVFS 1242
Query: 1958 DGIDH-LPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVFEPVYPGEDFETLAS 1782
+G D LP + + +RLP H A PS+ LS S GE FE LA+
Sbjct: 1243 EGEDRTLPTL---HLPPSRLPLHLLTEPAAPSEVLLSETEPSKSPITLALLGESFEELAA 1299
Query: 1781 TFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDPTLLPASIPKR 1602
FLPAHDP L+EIIF + S+QFP+L+ PF+L QP +L+AA H DPTLL +SI KR
Sbjct: 1300 HFLPAHDPELKEIIFADQSSSQFPFLDVPFELSCQPSSLLAASHRPASDPTLLVSSIKKR 1359
Query: 1601 LRFRRNATPYVISPKDQLLGELLFISLCKAYGRHPSSVEPFDEALFADCINLNEFAQLSS 1422
LRFR + PY IS D LLG+ LF SLC+A+ R P V PFD LFA+CI LNE+AQLSS
Sbjct: 1360 LRFRPSDCPYFISSNDILLGQHLFNSLCRAFNRSPLEVIPFDPVLFAECIALNEYAQLSS 1419
Query: 1421 KTQTTIMANANRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGP 1242
KT+ TI+ANA+RSDPDWR++AVRIF+K+QHK N+ SIFGSWKACQTLALMHD V++ LGP
Sbjct: 1420 KTKATIVANASRSDPDWRFTAVRIFAKAQHKVNDGSIFGSWKACQTLALMHDYVIMTLGP 1479
Query: 1241 VKKYQRLFDNRDRPAHIYVHASHTPFQMSDWCREHLSPCEHVANDYTAFDQSQHGEAVVL 1062
VKKYQR+ D++DRP+HIY H TP Q+S WC++ + NDYT+FDQSQHGEAVVL
Sbjct: 1480 VKKYQRILDHQDRPSHIYTHCGKTPAQLSSWCQKFSLDGPSLCNDYTSFDQSQHGEAVVL 1539
Query: 1061 EIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYL 882
E KMRR SIP+ LIQLH +LKTN++TQFGPLTCMRLTGEPGTYDDNTDYNLAVI+SQY
Sbjct: 1540 ECLKMRRCSIPDNLIQLHLHLKTNISTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQYQ 1599
Query: 881 MASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSP 702
M + P MVSGDDS+I P +P W + +LHLRFK E T PLFCGY VGPSG R+P
Sbjct: 1600 MGATPCMVSGDDSVIFANPPIHPTWPAVENLLHLRFKTESTTQPLFCGYYVGPSGCCRNP 1659
Query: 701 ITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPIEQVHYQAALFDFFCRKA 522
+ LFAK ++ D G+LDD L+SYL E+S+GH LG +L+P YQ+A FDFFCRKA
Sbjct: 1660 LALFAKLMITTDKGNLDDTLSSYLYEYSIGHRLGDACLSLLPSHLHSYQSACFDFFCRKA 1719
Query: 521 SREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378
S QK +L E +++ + SS+ + PL A L + + + LL+ S
Sbjct: 1720 SPLQKTLLSFEEPSPSLLKKLASSSAWASGPLLAQLDNDSLQSLLERS 1767
Score = 333 bits (855), Expect = 5e-88
Identities = 173/353 (49%), Positives = 225/353 (63%), Gaps = 6/353 (1%)
Frame = -3
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
E+LS T HRD+ +P++ PL+ SL+ +P+ ++ FL+ GI +SG+G HPH
Sbjct: 8 EALSTTSHRDSSLNPVLYHSVSPLQRSLDLFPWIITRDALPFLNSCGIPVSGFGTTPHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
HK IE ++L W +L SSV+FMKPSKFRKL + NF EL N+RLTP DT RYP
Sbjct: 68 AVHKAIETFLLFSHWSSLASTLSSVMFMKPSKFRKLAAINPNFDELTNFRLTPADTVRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHITQLYATLVVPPESSFTETSFFPEL 5409
++S++LP H VFMHDALMY+TP I DLF P + +L+ +LVVPPESSFT+ S FP +
Sbjct: 128 TTSSSLPQHEIVFMHDALMYFTPHQIVDLFERCPLLNRLHCSLVVPPESSFTDLSLFPTI 187
Query: 5408 YNFHFHDSDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y + + ++L Y EG+ + Y QP+SA+ WL+ I LS++ILES GPVH +LI
Sbjct: 188 YTYQLNSNNLHYTPEGHHAGSYDQPRSAIRWLKLRRITSPFFNLSVTILESWGPVHSILI 247
Query: 5228 QRG------LAPKHRENTTRDFDTPDCFLLPAPTSLSQNTRDRLVPLAAYHSLRAYVMAV 5067
QRG LAP H F P +LP T L+Q R R+VP Y +L Y AV
Sbjct: 248 QRGLPISDSLAPPH-----ASFKVPQARVLPEATFLNQPLRHRMVPSEVYDALFTYTRAV 302
Query: 5066 RTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFAS 4908
RTLRT+DPAGFVRT S KP+ AWVT +AWD+LQ +ALL RP V Y F S
Sbjct: 303 RTLRTSDPAGFVRTHSNKPKHAWVTPQAWDNLQTYALLNAPVRPRVVYNFFLS 355