BLASTX nr result
ID: Akebia23_contig00008509
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00008509
(3832 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1423 0.0
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1416 0.0
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun... 1411 0.0
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun... 1398 0.0
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr... 1380 0.0
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1379 0.0
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1373 0.0
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 1370 0.0
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob... 1368 0.0
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 1366 0.0
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1364 0.0
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m... 1362 0.0
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1360 0.0
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 1358 0.0
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1358 0.0
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] 1355 0.0
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras... 1354 0.0
ref|XP_004509767.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 1353 0.0
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1352 0.0
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1350 0.0
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1423 bits (3683), Expect = 0.0
Identities = 713/989 (72%), Positives = 815/989 (82%), Gaps = 19/989 (1%)
Frame = -3
Query: 3620 MWRNVAKHVASSRNLTRFSQNSIIQK-----------KTRSFELKIQSSFDFSKMGIRN- 3477
MWRN+AKH A +R L SQ+S K R+ E + + G+R
Sbjct: 1 MWRNLAKH-AYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRI 59
Query: 3476 GVLLSQEEQMGRRNFRYFRNPISF-------KGFASVAEAVSSTDTEEDVSVVDEIQGLL 3318
GVL Q++++GR F + P++F KG+AS AEA++S EED+S VDE+Q L+
Sbjct: 60 GVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIAS---EEDMSGVDEVQELV 116
Query: 3317 EKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMC 3138
E+++K DK +KQ L+GG+ GK+++LR+RQ+K+ETEAW++AA+EY+ELL DMC
Sbjct: 117 EEVNKGDKL------EKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMC 170
Query: 3137 KQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMH 2958
+QKLAPNLPY+KSLFLGWF P RD I EQ+ ++GKNR YA YFDHLPADMMAVITMH
Sbjct: 171 EQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMH 230
Query: 2957 KLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVA 2778
KLMGLLMT + +G R+VQA+ IGEAIE EVRI F++K++ + S+ V
Sbjct: 231 KLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG-SNPVT 289
Query: 2777 KEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPP 2598
KE+EKL QDD KPWGQDA KVG RLIELL+ETAYIQPP
Sbjct: 290 KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPP 349
Query: 2597 VDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPM 2418
DQL DGPPDIRPAF H+LK V K+T K RR+GVIECDPLVR+GLEKTARH+VIPYMPM
Sbjct: 350 ADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPM 409
Query: 2417 LVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRV 2238
LVPP+NWT YDKGA+LFLPS VMR HG+R QREAIKRAPRK LE FEAL+TLGNTKWR+
Sbjct: 410 LVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRI 469
Query: 2237 NKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHS 2058
NKRV GVI +IWA+GGRLADLVDREDVPLP +PDTEDE EIR WKWKV+++KKENSERHS
Sbjct: 470 NKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHS 529
Query: 2057 KRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPL 1878
+RCD+ELKLAVA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPL
Sbjct: 530 QRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL 589
Query: 1877 GKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPF 1698
GKSGL+WLKIH+AN+YAGGVDKLSY+GR+AFTENHL+DIFDSAD+PLEGRRWWL AEDPF
Sbjct: 590 GKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPF 649
Query: 1697 QCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKP 1518
QCL CINLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KP
Sbjct: 650 QCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKP 709
Query: 1517 ADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGA 1338
ADVYSGIAARVL+IM+ DA+KDP T P+AL ARLLISQVDRKLVKQTVMTSVYGVTYIGA
Sbjct: 710 ADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGA 769
Query: 1337 RDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASEN 1158
RDQIKRRLKER AI D+ ++F AS YAAK TLTAL EMF+AAR IMSWLGDCAKVIASEN
Sbjct: 770 RDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASEN 829
Query: 1157 QLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDG 978
V+W TPLGLPVVQPYR LG HLIKTSLQ+L+L+RETDKVMV+RQ+TAFPPNFVHSLDG
Sbjct: 830 HPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDG 889
Query: 977 SHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLESFQE 798
SHMMMTA+AC+KAGLNFAGVHDSYWTHACDVD MN+ILREKFVELY PILENLLE FQ+
Sbjct: 890 SHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQK 949
Query: 797 SFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
SFP LNFPPLPERGDFDL+EVL+SPYFFN
Sbjct: 950 SFPTLNFPPLPERGDFDLREVLESPYFFN 978
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
protein product [Vitis vinifera]
Length = 1035
Score = 1416 bits (3666), Expect = 0.0
Identities = 725/1039 (69%), Positives = 829/1039 (79%), Gaps = 27/1039 (2%)
Frame = -3
Query: 3746 MSSSRTLIPTRNLCNKFDLF-HFDRQNHPQPYTQFCWSKISVDMWRNVAKHVA------- 3591
MSS +T I + NL DL F++ + +P K MWRN+AK
Sbjct: 1 MSSGKTPILSANLGRDLDLIISFEKPTNFRPNPL----KKPTVMWRNIAKRAIPRAPRKC 56
Query: 3590 ---SSRNLTR------FSQNSIIQK--KTRSFELKIQSSFDFSKMGIRN-GVLLSQEEQM 3447
S+ L+R FSQ+ I + K +FE SS FS+MG R G + S+E+ +
Sbjct: 57 VYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAV 116
Query: 3446 GRRNFRYFRNPISFKGF-----ASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFE 3282
GR +F RN + F GF ASVAEAVSSTD EEDVS DEIQ LL +M KE+K+
Sbjct: 117 GRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVN 176
Query: 3281 LGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMK 3102
++++ + GM G+Y LR+RQVKIETEAW+ AA+EYKELL DMC+QKLAPNLPYMK
Sbjct: 177 FKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMK 236
Query: 3101 SLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDH 2922
SLFLGWF P RD+I EQE R GKN+ YA YFD LPADMM+VITMHKL+GLLMT +H
Sbjct: 237 SLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEH 296
Query: 2921 GMVRLVQASLEIGEAIEQEVRIYNFLKKS-RSNTXXXXXXXXXESDAVAKEKEKLXXXXX 2745
G R+VQA+ IG+AIEQEVRI+NFL+K+ R D V E+EKL
Sbjct: 297 GSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVT 356
Query: 2744 XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVD-QLADGPPD 2568
D+ KPWG +A+AKVG RLIELLM+TAYIQPPVD QLAD PPD
Sbjct: 357 NLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPD 416
Query: 2567 IRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRY 2388
IRPAF H+ K V ++ K RRFGVIECDPLV++GLE+TARH+VIPY+PMLVPP+ WT Y
Sbjct: 417 IRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGY 476
Query: 2387 DKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHK 2208
DKGAHLFLPS VMRTHG+R QREA+KRAPR QLE VFEAL+TLGNTKWR+NKR+F V+ +
Sbjct: 477 DKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDR 536
Query: 2207 IWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLA 2028
IWA GG LADLVDR DVPLP +PDTEDE ++R WKWKVK++KK NSERHS+RCD+ELKLA
Sbjct: 537 IWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKLA 596
Query: 2027 VAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKI 1848
VA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGL WLKI
Sbjct: 597 VARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLKI 656
Query: 1847 HMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVACINLS 1668
H+ANL+AGGVDKLS++GRI FTENHLDDIFDSAD+PLEG+RWWL AEDPFQ L ACINLS
Sbjct: 657 HLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINLS 716
Query: 1667 DALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAAR 1488
+ALRSSSPETTISH+P+HQDGSCNGLQHYAALGRD+LGA AVNLVAG+KPADVYSGIAAR
Sbjct: 717 EALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAAR 776
Query: 1487 VLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 1308
VL+IM+ DAEKDP +PDAL AR+LI+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE
Sbjct: 777 VLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 836
Query: 1307 RGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWTTPLG 1128
R AI DD +LF A+ YAAKITLTAL EMFQAAR IMSWLGDCAK+IASENQ V+WTTPLG
Sbjct: 837 RNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTPLG 896
Query: 1127 LPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMTAIAC 948
LPVVQPYR LG HLIKTSLQ+LTL+RET+ +MV+RQ+TAFPPNFVHSLDGSHMMMTAIAC
Sbjct: 897 LPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIAC 956
Query: 947 KKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLESFQESFPKLNFPPL 768
KKAGLNFAGVHDSYWTHACDVD MN++LREKFV+LYETPILENLLESFQ+SFP L FPPL
Sbjct: 957 KKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPPL 1016
Query: 767 PERGDFDLKEVLKSPYFFN 711
PERGDFDL+EVL+SPYFFN
Sbjct: 1017 PERGDFDLREVLESPYFFN 1035
>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
gi|462411068|gb|EMJ16117.1| hypothetical protein
PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 1411 bits (3652), Expect = 0.0
Identities = 709/1032 (68%), Positives = 818/1032 (79%), Gaps = 20/1032 (1%)
Frame = -3
Query: 3746 MSSSRTLIPTRNLCNKFDLFHFDRQNHPQPYTQFCWSKISVDMWRNVAKHVASSR----- 3582
MS S+T + N+ F FH H P S IS +WRN AK S +
Sbjct: 1 MSRSQTPLSPANISKNFT-FHSPLIFHKNP------SMISTTVWRNFAKQAISRKQRFHI 53
Query: 3581 ---------NLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRN-GVLLSQEEQMGRRNF 3432
+L Q S+ + FEL SS FS++G R G + S E+ M + +F
Sbjct: 54 NSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSF 113
Query: 3431 RYFRNPISF-----KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQK 3267
RNPI F KG+ASVAEAVSSTD EE+VSVVDE+Q LL++MS E+K+ + Q+
Sbjct: 114 WSVRNPIWFNGFCPKGYASVAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYKQRT 173
Query: 3266 QQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLG 3087
+QN GMG GKYH+L++RQ+KIETEAW++AA+EY+EL+ DMC+QKLAPNLPYMKSLFLG
Sbjct: 174 RQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLG 233
Query: 3086 WFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRL 2907
WF P R++I EQ+ R+GKN+ YA Y D LPADMM+VITMHKLMGLLMT +HG R+
Sbjct: 234 WFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRV 293
Query: 2906 VQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXX 2727
V A+ IGEAIEQEVRI+ FL+ +R SDA KE+EKL
Sbjct: 294 VAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGE-SDAAKKEREKLNKKVTNLMKKQ 352
Query: 2726 XXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRH 2547
D K W +A+AKVG RLIELL +TA+IQPP DQLADGPPDIRPAF H
Sbjct: 353 KLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVH 412
Query: 2546 SLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLF 2367
+ + V KD +RR+GVIECDPLV +GLEKTARH+VIPYMPMLVPP+NWT YDKG + F
Sbjct: 413 TFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFF 472
Query: 2366 LPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGR 2187
LPS VMR HG+R QREAIKR PR+QLE VF+ALD LGNT+WRVNKRV V+ +IWA+GG
Sbjct: 473 LPSYVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGGH 532
Query: 2186 LADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKD 2007
LADLVDR DVPLP +PDTEDET ++ WKWKVK++KKEN ERHS+RCD ELKLAVA KMKD
Sbjct: 533 LADLVDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDTELKLAVARKMKD 592
Query: 2006 EDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYA 1827
E+GF+YPHNLDFRGRAYPMHP+LNHLGSD+CRGILEF EGRPLGKSGL WLKIH+ANLYA
Sbjct: 593 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHLANLYA 652
Query: 1826 GGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVACINLSDALRSSS 1647
GGVDKLS +GRIAFTENHLDDIFDS DKPLEGRRWWL AEDPFQCL CINL++ALRSSS
Sbjct: 653 GGVDKLSLEGRIAFTENHLDDIFDSVDKPLEGRRWWLKAEDPFQCLAVCINLAEALRSSS 712
Query: 1646 PETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRV 1467
PET ISH+P+HQDGSCNGLQHYAALGRDKLGAA+VNLV G+KPADVYSGIA RVLEIMR
Sbjct: 713 PETFISHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVTGEKPADVYSGIAVRVLEIMRR 772
Query: 1466 DAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDD 1287
DA+KDPV +P+AL A+LLI+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG+I DD
Sbjct: 773 DAQKDPVVFPEALRAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGSISDD 832
Query: 1286 SQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWTTPLGLPVVQPY 1107
+++F + YAAKITLTAL EMF+AAR IMSWLG+CAK+IASENQ V+WTTPLGLPVVQPY
Sbjct: 833 AEIFGCACYAAKITLTALGEMFEAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPY 892
Query: 1106 RVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMTAIACKKAGLNF 927
R G HLIKTSLQ+LTL+RET+KVMV+RQ+TAFPPNFVHSLD SHMMMTAIACKKAGL+F
Sbjct: 893 RKFGRHLIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDSSHMMMTAIACKKAGLSF 952
Query: 926 AGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLESFQESFPKLNFPPLPERGDFD 747
AGVHDSYWTHACDVD MNKILREKFV+LYETPILENLLESFQ+SFP L FPPLPERGDFD
Sbjct: 953 AGVHDSYWTHACDVDEMNKILREKFVQLYETPILENLLESFQQSFPALTFPPLPERGDFD 1012
Query: 746 LKEVLKSPYFFN 711
L++VL+SPYFFN
Sbjct: 1013 LRDVLESPYFFN 1024
>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
gi|462422319|gb|EMJ26582.1| hypothetical protein
PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 1398 bits (3618), Expect = 0.0
Identities = 700/1007 (69%), Positives = 816/1007 (81%), Gaps = 37/1007 (3%)
Frame = -3
Query: 3620 MWRNVAKHVASSR-NLTR-------------FSQNSIIQKKTRSFELKIQSSFDFSKMGI 3483
MWRN+AK VAS + NL+ FSQ S K R FE + + MG
Sbjct: 1 MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60
Query: 3482 RN-GVLLSQEEQMGRRNFRYFRNPISF-------KGFASVAEAVSSTDTEEDVSVVDEIQ 3327
R G + SQ+E++GR + P KG+ASVAEA++STD EED S +EIQ
Sbjct: 61 RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQ 120
Query: 3326 GLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLE 3147
+LE + +E+ E ++ + +V GMG GKY+LLRKRQ+K+ETEAW +AA+EY+ELL
Sbjct: 121 EMLEDLIRENN-MVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLA 179
Query: 3146 DMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVI 2967
DMC+QKLAPNLPY+KSLFLGWF P RD+I +Q+ ++ +R ++A YFDHLPAD MAVI
Sbjct: 180 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVI 239
Query: 2966 TMHKLMGLLMTSDDH-GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXES 2790
TMHKLMGLLMT++ G VR+VQA+ IGEAIE EVRI+ FL+K++ +S
Sbjct: 240 TMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADS 299
Query: 2789 --------------DAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAK 2652
+ + KE+E+L Q+DLKPWGQ+A K
Sbjct: 300 VPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVK 359
Query: 2651 VGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLV 2472
VGCRLI+LLM+TAYIQPPVDQ+ DGPPDIRPAF H+LK +T+DT KT+RR+GVIECDP+V
Sbjct: 360 VGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIV 419
Query: 2471 RQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQ 2292
R+G+EKTARH+V+PYMPMLVPPINWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQ
Sbjct: 420 RKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQ 479
Query: 2291 LESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIR 2112
LE VFEALDTLG+TKWRVNKRV GVI +IWA+GGRLADLVDREDVPLP +PDTEDE EIR
Sbjct: 480 LEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIR 539
Query: 2111 SWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNH 1932
WKWK+K KKENSERHS+RCD+ELKLA + KMKDE+GF+YPHNLDFRGRAYPMHP+LNH
Sbjct: 540 KWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 599
Query: 1931 LGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 1752
LGSD+CRGILEF+EGR LGKSGL+WLKIH+ANLYAGGVDKLS+D R AFTENH+D+IFDS
Sbjct: 600 LGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFDS 659
Query: 1751 ADKPLEGRRWWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAAL 1572
AD+PLEGRRWWLGAEDPFQCL ACINL +ALRS SPETTIS+MP+HQDGSCNGLQHYAAL
Sbjct: 660 ADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAAL 719
Query: 1571 GRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRK 1392
GRDKLGAAAVNLV GDKPADVYSGIAARVL+IMR DAEKDP T P+ALHARLLI+QVDRK
Sbjct: 720 GRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQVDRK 779
Query: 1391 LVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAA 1212
LVKQTVMTSVYGVTY+GARDQIKRRLKERG+I DD+ LF A+ YAA+ TLTAL EMF+AA
Sbjct: 780 LVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAA 839
Query: 1211 RCIMSWLGDCAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVM 1032
R IMSWLG+CAKVIASENQ V+W TPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVM
Sbjct: 840 RSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVM 899
Query: 1031 VQRQKTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKF 852
V+RQ+TAFPPNFVHSLDGSHMMMTA+ACKKAGLNFAGVHDSYWTHACD+D MN+ILREKF
Sbjct: 900 VKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILREKF 959
Query: 851 VELYETPILENLLESFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
VELYE PILENLLE FQ+SFP L FPPLP+RGDFDL++VL+SPYFFN
Sbjct: 960 VELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006
>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533045|gb|ESR44228.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 1030
Score = 1380 bits (3573), Expect = 0.0
Identities = 698/1032 (67%), Positives = 825/1032 (79%), Gaps = 20/1032 (1%)
Frame = -3
Query: 3746 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 3588
MS+++T P NKFD ++ + N+ +P +F KIS MWRNVAK S
Sbjct: 1 MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58
Query: 3587 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEEQMGRRNF 3432
+ + SQ+SI+++K + L + R G +L+ E+ MGR +F
Sbjct: 59 HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118
Query: 3431 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 3258
+N + +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE+++ E G + +
Sbjct: 119 GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRR 178
Query: 3257 LVG-GMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWF 3081
V GMG GKY +L+ RQVKIETEAW+QAA EY+ELL DMC+QKLAPNLPYMKSLFLGWF
Sbjct: 179 RVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238
Query: 3080 GPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQ 2901
P RD+I EQE+ R K++ YA YFD LPADMMAVITMHKLMGLLMT +HG R+VQ
Sbjct: 239 EPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQ 298
Query: 2900 ASLEIGEAIEQEVRIYNFLKKSR--SNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXX 2727
A+ IG+AIEQEVRI+ FL+K++ + T ES+ V E+EKL
Sbjct: 299 AACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQ 358
Query: 2726 XXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRH 2547
QDD KPWGQDA+AKVG R+IELL +TAYIQ P DQL D PPDI PAF H
Sbjct: 359 KLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTH 418
Query: 2546 SLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLF 2367
+L+ V+K+T ++++GVIEC+PLV +GLE+TARH+VIPYMPMLVPP+ WT YDKGAH F
Sbjct: 419 TLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFF 478
Query: 2366 LPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGR 2187
LPS VMRTHG++ QR+ +KR P+KQLE VFEALDTLGNTKWRVN RV V+ +IW+ GGR
Sbjct: 479 LPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGR 538
Query: 2186 LADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKD 2007
LADLVDR DVPLP +P+TEDE ++R W+WKV+ +KKEN ERHS+RCD+ELKL+VA KMKD
Sbjct: 539 LADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKD 598
Query: 2006 EDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYA 1827
E+GF+YPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSGL WLKIH+ANLYA
Sbjct: 599 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYA 658
Query: 1826 GGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVACINLSDALRSSS 1647
GGVDKLS++GR+AFTENHLDDIFDSADKPLEGRRWWL AEDPFQCL CINL++ALRSSS
Sbjct: 659 GGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSS 718
Query: 1646 PETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRV 1467
PET ISH+P+HQDGSCNGLQHYAALGRD LGAAAVNLVA +KPADVYSGIAARVL I+R
Sbjct: 719 PETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIRR 778
Query: 1466 DAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDD 1287
DA++DP +PDAL A+LL+SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA ++
Sbjct: 779 DAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEE 838
Query: 1286 SQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWTTPLGLPVVQPY 1107
++LF AS YAAK+TLTAL EMFQAAR IMSWLG+CAK+IASENQ V+WTTPLGLPVVQPY
Sbjct: 839 AELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPY 898
Query: 1106 RVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMTAIACKKAGLNF 927
R LG H +KTSLQILTL+RET+KVMV+RQ+TAFPPNFVHSLDGSHMMMTA+AC+KAGL F
Sbjct: 899 RKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTF 958
Query: 926 AGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLESFQESFPKLNFPPLPERGDFD 747
AGVHDSYWTHACDVD MN+ILREKFVELYE PILENLL+SFQ+SFPKL PPLPERGDFD
Sbjct: 959 AGVHDSYWTHACDVDEMNRILREKFVELYEMPILENLLDSFQKSFPKLVLPPLPERGDFD 1018
Query: 746 LKEVLKSPYFFN 711
L+EVL SPYFFN
Sbjct: 1019 LREVLGSPYFFN 1030
>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Citrus sinensis]
Length = 1026
Score = 1379 bits (3569), Expect = 0.0
Identities = 696/1031 (67%), Positives = 825/1031 (80%), Gaps = 19/1031 (1%)
Frame = -3
Query: 3746 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 3588
MS+++T P NKFD ++ + N+ +P +F KIS MWRNVAK S
Sbjct: 1 MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58
Query: 3587 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEEQMGRRNF 3432
+ + SQ+SI+++K + L + R G +L+ E+ MGR +F
Sbjct: 59 HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118
Query: 3431 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 3258
+N + +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE + G + ++
Sbjct: 119 GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEQQSG---GGRNRRR 175
Query: 3257 LVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFG 3078
+ GMG GKY +L+ RQVKIETEAW++AA EY+ELL DMC+QKLAPNLPYMKSLFLGWF
Sbjct: 176 VARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFE 235
Query: 3077 PFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQA 2898
P RD+I EQE+ R K++ YA YFD LPADMMAVITMHKLMGLLMT +HG R+VQA
Sbjct: 236 PLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQA 295
Query: 2897 SLEIGEAIEQEVRIYNFLKKSR--SNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXX 2724
+ IG+AIEQEVRI+ FL+K++ + T ES+ V E+EKL
Sbjct: 296 ACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQK 355
Query: 2723 XXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHS 2544
QDD KPWGQDA+AKVG R+IELL +TAYIQ P DQLAD PPDI PAF H+
Sbjct: 356 LPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHA 415
Query: 2543 LKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFL 2364
L+ V+K+T ++++GVIEC+PLV +GLE+TARH+VIPYMPMLVPP+ WT YDKGAH FL
Sbjct: 416 LRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFL 475
Query: 2363 PSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRL 2184
PS VMRTHG++ QR+ +KR P+KQLE VFEALDTLGNTKWRVN RV V+ +IW+ GGRL
Sbjct: 476 PSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRL 535
Query: 2183 ADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDE 2004
ADLVDR DVPLP +P+TEDE ++R W+WKV+ +KKEN ERHS+RCD+ELKL+VA KMKDE
Sbjct: 536 ADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDE 595
Query: 2003 DGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAG 1824
+GF+YPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSGL WLKIH+ANLYAG
Sbjct: 596 EGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAG 655
Query: 1823 GVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVACINLSDALRSSSP 1644
GVDKLS++GR+AFTENHLDDIFDSADKPLEGRRWWL AEDPFQCL CINL++ALRSSSP
Sbjct: 656 GVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSP 715
Query: 1643 ETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVD 1464
ET ISH+P+HQDGSCNGLQHYAALGRD LGAAAVNLVA +KPADVYSGIAARVL I++ D
Sbjct: 716 ETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRD 775
Query: 1463 AEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDS 1284
A++DP +PDAL A+LL+SQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA +++
Sbjct: 776 AQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEA 835
Query: 1283 QLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWTTPLGLPVVQPYR 1104
+LF AS YAAK+TLTAL EMFQAAR IMSWLG+CAK+IASENQ V+WTTPLGLPVVQPYR
Sbjct: 836 ELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYR 895
Query: 1103 VLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMTAIACKKAGLNFA 924
LG H +KTSLQILTL+RET+KVMV+RQ+TAFPPNFVHSLDGSHMMMTA+AC+KAGL FA
Sbjct: 896 KLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFA 955
Query: 923 GVHDSYWTHACDVDVMNKILREKFVELYETPILENLLESFQESFPKLNFPPLPERGDFDL 744
GVHDSYWTHACDVD MN+ILREKFVELYE PILENLL+SFQ+SFPKL FPPLPERGDFDL
Sbjct: 956 GVHDSYWTHACDVDEMNRILREKFVELYEMPILENLLDSFQKSFPKLVFPPLPERGDFDL 1015
Query: 743 KEVLKSPYFFN 711
+EVL SPYFFN
Sbjct: 1016 REVLGSPYFFN 1026
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 1373 bits (3555), Expect = 0.0
Identities = 684/989 (69%), Positives = 805/989 (81%), Gaps = 19/989 (1%)
Frame = -3
Query: 3620 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKTRSFELKIQSSFDFSKMGIR 3480
MWRN+ K ++S S+N T F Q+S+ + T+ F I S MG +
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTK-FRSLIPISCSNIVMGFQ 93
Query: 3479 N-GVLLSQEEQMGRRNFRYFRNPISF---KGFASVAEAV--SSTDTEEDVSVVDEIQGLL 3318
N G L +E + R + N F K +ASVAEAV SSTD EEDVSVVDE+Q LL
Sbjct: 94 NLGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELL 153
Query: 3317 EKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMC 3138
++ KE+KK F ++KQ+ L GMG KY L++RQVK+ETEAW+QAA+EYKELL DMC
Sbjct: 154 TELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 213
Query: 3137 KQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMH 2958
+QKLAPNLPY+KSLFLGWF P RD I EQE +GK++ YA+Y LPADMMAVITMH
Sbjct: 214 EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMH 273
Query: 2957 KLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVA 2778
KLMGLLMT DHG R+VQA+L IG+AIEQEVRI+NFL+K++ + V
Sbjct: 274 KLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED-GEHVT 332
Query: 2777 KEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPP 2598
+E+EKL QDD KPWGQDA+AKVG RLIELL++TAYIQPP
Sbjct: 333 QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPP 392
Query: 2597 VDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPM 2418
+QLA PPDIRPAF HS++ V K+T +RR+G+I+CD LV +GLE+TARH+VIPYMPM
Sbjct: 393 ANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPM 452
Query: 2417 LVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRV 2238
LVPP+ WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEALDTLG+TKWR+
Sbjct: 453 LVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRI 512
Query: 2237 NKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHS 2058
NKRV VI +IWA GGRLADLVDR+D PLP +PDTEDE W+WKVK++KKEN ERHS
Sbjct: 513 NKRVLSVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHS 572
Query: 2057 KRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPL 1878
+RCD+ELKLAVA KMKDE+GFFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+L FAEGRPL
Sbjct: 573 QRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPL 632
Query: 1877 GKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPF 1698
G+SGL+WLKIH+ANL+AGGV+KLS +GRIAFTENH+DDIFDSADKPLEGRRWWL AEDPF
Sbjct: 633 GESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPF 692
Query: 1697 QCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKP 1518
QCL CINLS+A+RSSSPET+ISH+P+HQDGSCNGLQHYAALGRD+LGAAAVNLVAG+KP
Sbjct: 693 QCLAVCINLSEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKP 752
Query: 1517 ADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGA 1338
ADVYSGIAARVL+IM+ DA++DP +PDA+ AR L++QVDRKLVKQTVMTSVYGVTYIGA
Sbjct: 753 ADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGA 812
Query: 1337 RDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASEN 1158
RDQIKRRLKERGAI DDS+LF A+ YAAK+TLTAL EMF+AAR IM+WLG+CAK+IASEN
Sbjct: 813 RDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASEN 872
Query: 1157 QLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDG 978
+ V+WTTPLGLPVVQPYR +G HLIKTSLQILTL++ET+KVMV+RQ+TAFPPNF+HSLDG
Sbjct: 873 EPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDG 932
Query: 977 SHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLESFQE 798
SHMMMTA+AC++AGLNFAGVHDSYWTHACDVD +N+ILREKFVELYETPILE LLESFQ
Sbjct: 933 SHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQT 992
Query: 797 SFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
S+P L FPPLPERGDFDL++VL+SPYFFN
Sbjct: 993 SYPTLLFPPLPERGDFDLRDVLESPYFFN 1021
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1370 bits (3547), Expect = 0.0
Identities = 680/988 (68%), Positives = 803/988 (81%), Gaps = 18/988 (1%)
Frame = -3
Query: 3620 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKTRSFELKIQSSFDFSKMGIR 3480
MWRN+ K ++S S+N T F Q+SI + T+ F I S MG +
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTK-FRSLIPISCSNIVMGFQ 93
Query: 3479 N-GVLLSQEEQMGRRNFR--YFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEIQGLLE 3315
N G L +E + R + N K +ASVAEAV SSTD EEDVSVVDE+ LL
Sbjct: 94 NLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLT 153
Query: 3314 KMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCK 3135
++ KE+KK F ++KQ+ L GMG KY L++RQVK+ETEAW+QAA+EYKELL DMC+
Sbjct: 154 ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCE 213
Query: 3134 QKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHK 2955
QKLAPNLPY+KSLFLGWF P RD I EQE +GK++ YA+YF LPADMMAVITMHK
Sbjct: 214 QKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHK 273
Query: 2954 LMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAK 2775
LMGLLMT DHG R+VQA+L IG+AIEQEVRI+NFL+K++ + V +
Sbjct: 274 LMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED-GEHVTQ 332
Query: 2774 EKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPV 2595
E+EKL QDD KPWGQDA+AKVG RLI+LL++TAYIQPP
Sbjct: 333 EQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPA 392
Query: 2594 DQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPML 2415
+QLA PPDIRPAF HS++ V K+T +RR+G+I+CD LV +GLE+TARH+VIPYMPML
Sbjct: 393 NQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPML 452
Query: 2414 VPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVN 2235
VPP+ WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEALDTLGNTKWR+N
Sbjct: 453 VPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRIN 512
Query: 2234 KRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSK 2055
KRV V+ +IWA GGRLADLVDR+D PLP +PDTEDE W+WKVK++KKEN ERHS+
Sbjct: 513 KRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQ 572
Query: 2054 RCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLG 1875
RCD+ELKLAVA KMKDE+ FFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG
Sbjct: 573 RCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLG 632
Query: 1874 KSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQ 1695
+SGL+WLKIH+ANL+AGGV+KLS +GRI FTENH+DDIFDS+DKPLEGRRWWL AEDPFQ
Sbjct: 633 ESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQ 692
Query: 1694 CLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPA 1515
CL CINLS+A+RSSSPET++SH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPA
Sbjct: 693 CLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPA 752
Query: 1514 DVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGAR 1335
DVYSGIAARVL+IM+ DA++DP +PDA+ AR+L++QVDRKLVKQTVMTSVYGVTYIGAR
Sbjct: 753 DVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGAR 812
Query: 1334 DQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQ 1155
DQIKRRLKERGAI DDS+LF A+ YAAK+TLTAL EMF+AAR IM+WLG+CAK+IASEN+
Sbjct: 813 DQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENE 872
Query: 1154 LVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGS 975
V+WTTPLGLPVVQPYR +G HLIKTSLQILTL+RET+KVMV+RQ+TAFPPNF+HSLDGS
Sbjct: 873 PVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGS 932
Query: 974 HMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLESFQES 795
HMMMTA+AC++AGLNFAGVHDSYWTHACDVD +N+ILREKFVELYE PILE LLESFQ S
Sbjct: 933 HMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTS 992
Query: 794 FPKLNFPPLPERGDFDLKEVLKSPYFFN 711
+P L FPPLPERGDFD+++VL+SPYFFN
Sbjct: 993 YPTLLFPPLPERGDFDMRDVLESPYFFN 1020
>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|590698457|ref|XP_007045722.1| DNA-directed RNA
polymerase isoform 1 [Theobroma cacao]
gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
Length = 996
Score = 1368 bits (3542), Expect = 0.0
Identities = 692/1001 (69%), Positives = 798/1001 (79%), Gaps = 31/1001 (3%)
Frame = -3
Query: 3620 MWRNVAKHVA----------------SSRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKM 3489
MWR++ K A SS + T FSQ+S+ K R+ E + +
Sbjct: 1 MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60
Query: 3488 GIRN-GVLLSQEEQMGRRNFRYFRNPISF-------KGFASVAEAVSSTDTEEDVSVVDE 3333
G R GV SQ++ +G+ + +P+ F KG+AS AEAV ST EED+S +E
Sbjct: 61 GFRQIGVFSSQKDDLGKFSLNQPGDPLRFSGKFWNLKGYASAAEAVIST--EEDMSGSEE 118
Query: 3332 IQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKEL 3153
I L+E M++E+KK L Q K+ + GMG KY+ L+KRQ+KIETEAW++AA+EY+EL
Sbjct: 119 IHELMEAMAREEKKMSFLVQPKK--VAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQEL 176
Query: 3152 LEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMA 2973
L DMC+ KLAPNLPY+KSLFLGWF P RDSI GEQE + R ++A YF+ L ADMMA
Sbjct: 177 LMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMA 235
Query: 2972 VITMHKLMGLLMTSD-DHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXX 2796
V+TMHKLMGLLMT+ G +R+VQA+ +IGEAIE E +I +FL K++
Sbjct: 236 VVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGE 295
Query: 2795 ES------DAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLI 2634
+ + K++EKL D K WGQ+A KVGCRLI
Sbjct: 296 SEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLI 355
Query: 2633 ELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEK 2454
+LL+E AYIQPPVDQL D PPDIRPAF HSLK +TKD K +RR+GVIECD LVR+GLEK
Sbjct: 356 QLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEK 415
Query: 2453 TARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFE 2274
TARH+VIPYMPMLVPP NWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE +FE
Sbjct: 416 TARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFE 475
Query: 2273 ALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKV 2094
ALDTLGNTKWR+NKRV GV+ ++WA GGR+A LVDREDVPLP +PDTEDE EI+ WKWKV
Sbjct: 476 ALDTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKV 535
Query: 2093 KTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLC 1914
K K+N+ERHS RCDVELKLAVA KM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLC
Sbjct: 536 KAANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 595
Query: 1913 RGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLE 1734
RG+LEFAEGRPLGKSGL+WLKIH+ANLYAGGVDKLSY+GRIAFTENHLDDIFDSAD+PLE
Sbjct: 596 RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLE 655
Query: 1733 GRRWWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLG 1554
GRRWWL AEDPFQCL ACINLS+ALRSSSPETTISHMP+HQDGSCNGLQHYAALGRDKLG
Sbjct: 656 GRRWWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLG 715
Query: 1553 AAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTV 1374
AA+VNLVAG+KPADVYSGIAARV++IMR DAEKDP P ALHARLLI+QVDRKLVKQTV
Sbjct: 716 AASVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQTV 775
Query: 1373 MTSVYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSW 1194
MTSVYGVTYIGARDQIKRRLKER AI DD+++F AS YAA+ TLTAL EMFQAAR IM+W
Sbjct: 776 MTSVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNW 835
Query: 1193 LGDCAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKT 1014
LG+CAKVI+SENQ V+W TPLGLPVVQPYR LG HLIKTSLQ+LTL+RETDKVM +RQ+T
Sbjct: 836 LGECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRT 895
Query: 1013 AFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYET 834
AFPPNFVHSLDGSHMMMTA+ACKKAGLNFAGVHDSYWTHACDVD MN+ILREKFVELYE
Sbjct: 896 AFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEA 955
Query: 833 PILENLLESFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
PILENLLESFQ+SFP LNFPPLPERGDFDL+EVL+SPYFFN
Sbjct: 956 PILENLLESFQKSFPSLNFPPLPERGDFDLREVLESPYFFN 996
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1366 bits (3536), Expect = 0.0
Identities = 677/988 (68%), Positives = 802/988 (81%), Gaps = 18/988 (1%)
Frame = -3
Query: 3620 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKTRSFELKIQSSFDFSKMGIR 3480
MWRN+ K ++S S+N T F Q+SI + T+ F I S MG +
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTK-FRSLIPISCSNIVMGFQ 93
Query: 3479 N-GVLLSQEEQMGRRNFR--YFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEIQGLLE 3315
N G L +E + R + N K +ASVAEAV SSTD EEDVSVVDE+ LL
Sbjct: 94 NLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLT 153
Query: 3314 KMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCK 3135
++ KE+KK F ++KQ+ L GMG KY L++RQVK+ETEAW+QAA+EYKELL DMC+
Sbjct: 154 ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCE 213
Query: 3134 QKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHK 2955
QKLAPNLPY+KSLFLGWF P RD I EQE +GK++ YA+YF LPADMMAVITMHK
Sbjct: 214 QKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHK 273
Query: 2954 LMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAK 2775
LMGLLMT DHG R+VQA+L IG+AIEQEVRI+NFL+K++ + V +
Sbjct: 274 LMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED-GEHVTQ 332
Query: 2774 EKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPV 2595
E+EKL QDD KPWGQDA+AKVG RLI+LL++TAYIQPP
Sbjct: 333 EQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPA 392
Query: 2594 DQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPML 2415
+QLA PPDI PAF HS++ V K+T +RR+G+I+CD LV +GLE+TARH+VIPYMPML
Sbjct: 393 NQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPML 452
Query: 2414 VPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVN 2235
VPP+ WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL+ VFEALDTLGNTKWR+N
Sbjct: 453 VPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRIN 512
Query: 2234 KRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSK 2055
KRV V+ +IWA GGRLADLVDR+D PLP +PDTEDE + W+WKVK++KKEN ERHS+
Sbjct: 513 KRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQ 572
Query: 2054 RCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLG 1875
RCD+ELKLAVA KMKDE+ FFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG
Sbjct: 573 RCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLG 632
Query: 1874 KSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQ 1695
+SGL+WLKIH+ANL+AGGV+KLS +GRI FTENH+DDIFDS+DKPLEGRRWWL AEDPFQ
Sbjct: 633 ESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQ 692
Query: 1694 CLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPA 1515
CL CINLS+A+RSSSPET++SH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPA
Sbjct: 693 CLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPA 752
Query: 1514 DVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGAR 1335
+ YSGIAARVL+IM+ DA++DP +PDA+ AR+L++QVDRKLVKQTVMTSVYGVTYIGAR
Sbjct: 753 EAYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGAR 812
Query: 1334 DQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQ 1155
DQIKRRLKERGAI DDS+LF A+ YAAK+TLTAL EMF+AAR IM+WLG+CAK+IASEN+
Sbjct: 813 DQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENE 872
Query: 1154 LVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGS 975
V+WTTPLGLPVVQPYR +G HLIKTSLQILTL+RET+KVMV+RQ+TAFPPNF+HSLDGS
Sbjct: 873 PVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGS 932
Query: 974 HMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLESFQES 795
HMMMTA+AC++AGLNFAGVHDSYWTHACDVD +N+ILREKFVELYE PILE LLESFQ S
Sbjct: 933 HMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTS 992
Query: 794 FPKLNFPPLPERGDFDLKEVLKSPYFFN 711
+P L FPPLPERGDFD+++VL+SPYFFN
Sbjct: 993 YPTLLFPPLPERGDFDMRDVLESPYFFN 1020
>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
tuberosum]
Length = 993
Score = 1364 bits (3531), Expect = 0.0
Identities = 681/992 (68%), Positives = 797/992 (80%), Gaps = 3/992 (0%)
Frame = -3
Query: 3677 RQNHPQPYTQFCWSKISVDMWRNVAKHVASSRNLTRFSQNSIIQK---KTRSFELKIQSS 3507
R H + F S + + + + + NL SQ+SI + K+R + + S
Sbjct: 15 RNTHDSDFLGFAQSFGKTRPLQGLCEEIYRNPNLG-VSQSSIFTRVNGKSRCLDGMCEDS 73
Query: 3506 FDFSKMGIRNGVLLSQEEQMGRRNFRYFRNPISFKGFASVAEAVSSTDTEEDVSVVDEIQ 3327
+G + S+ + +FR + + + S AEA++ST E+ +DEIQ
Sbjct: 74 CRNHYLGFSESSIFSRV----KGDFRVCGSLGILRSYGSAAEAIASTSEED----IDEIQ 125
Query: 3326 GLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLE 3147
L+E+M+KE++ Q KQ VGGMG GKY+LLR+RQ+K+ETEAW+ AA+EY+ELL
Sbjct: 126 ELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYNLLRRRQIKVETEAWEDAAKEYQELLM 185
Query: 3146 DMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVI 2967
DMC+QKLAPNLPY+KSLFLGWF P RD+I EQ+ GKNRG YA +FD LPA+MMAVI
Sbjct: 186 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVI 245
Query: 2966 TMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESD 2787
TMHKLMGLLMT G R+VQA+ IGEAIE E RI+ FL+K++ N
Sbjct: 246 TMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEETAGD- 304
Query: 2786 AVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYI 2607
+ KE+E+L QDD KPWGQD KVGC+LI++L+ETAYI
Sbjct: 305 -IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILIETAYI 363
Query: 2606 QPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPY 2427
QPP DQL D PPDIRPAF H+LK V +T+K +RR+GVI+CDPLVR+GL+KTARH+VIPY
Sbjct: 364 QPPNDQLDDCPPDIRPAFMHTLKTV--ETVKGSRRYGVIQCDPLVRKGLDKTARHMVIPY 421
Query: 2426 MPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTK 2247
MPMLVPP NW+ YD+GA+LFLPS +MRTHG++ QREA+KR P+KQLE VF+ALDTLGNTK
Sbjct: 422 MPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTK 481
Query: 2246 WRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSE 2067
WRVNKRV G++ +IWA+GGRLADLVDREDVPLP +PDTEDE EI+ WKWKVK KKEN E
Sbjct: 482 WRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVKAAKKENCE 541
Query: 2066 RHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEG 1887
RHS+RCD+ELKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEF+EG
Sbjct: 542 RHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEG 601
Query: 1886 RPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAE 1707
RPLGKSGL+WLKIH+AN+Y GGVDKLSY+GR AF+ENH++DIFDSAD+PLEGRRWWLGAE
Sbjct: 602 RPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSADRPLEGRRWWLGAE 661
Query: 1706 DPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 1527
DPFQCL CIN+S+ALRS SPET+ISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAG
Sbjct: 662 DPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 721
Query: 1526 DKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTY 1347
DKPADVYSGIAARVL+IM+ DA+KDP T P+ + ARLLI+QVDRKLVKQTVMTSVYGVTY
Sbjct: 722 DKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVTY 781
Query: 1346 IGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIA 1167
IGARDQIKRRLKERGAIEDD++LF A+ YAAK TLTAL EMF+AAR IMSWLGDCAK+IA
Sbjct: 782 IGARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIA 841
Query: 1166 SENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHS 987
ENQ V+WTTPLGLPVVQPYR LG HLIKTSLQILTL+RETDKVMV+RQ+TAFPPNFVHS
Sbjct: 842 MENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHS 901
Query: 986 LDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLES 807
LDGSHMMMTAI CK+AGL+FAGVHDSYWTHA DVD MNKILREKFVELY+ PILENLLES
Sbjct: 902 LDGSHMMMTAITCKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLES 961
Query: 806 FQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
FQ+SFP L FPPLPERGDFDL+EVL+SPYFFN
Sbjct: 962 FQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
DNA-directed RNA polymerase 2, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 997
Score = 1362 bits (3526), Expect = 0.0
Identities = 685/997 (68%), Positives = 796/997 (79%), Gaps = 27/997 (2%)
Frame = -3
Query: 3620 MWRNVAKHVA-SSRNL------TRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRN-GVLL 3465
MWRN A+ + SS+ L T+ +Q+ I +K R E + +S +G R L
Sbjct: 1 MWRNFARRTSLSSKKLNFSSDCTQLNQDLDILQKVRHPEAQTLLCSPYSFLGSRRISGLS 60
Query: 3464 SQEEQMGRRNFRYFRNPISF-----KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKE 3300
SQ + + +F NP F KG+A+ A V ++ E D S DE+Q +E+++K
Sbjct: 61 SQNHEFIKPSFTNLTNPFGFSHFLFKGYATAAAQVIASTDESDFSGCDELQEQIEEINKH 120
Query: 3299 DKKF---FELGQQKQQN--LVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCK 3135
KK F QQ+QQ + GMG GKY +L+KRQ+K+ETEAW++AAREY+ELL DMC+
Sbjct: 121 HKKMDAHFRQQQQQQQRKKTIAGMGIGKYTILKKRQIKMETEAWEEAAREYQELLTDMCE 180
Query: 3134 QKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHK 2955
QKLAPNLPY+KSLFLGWF P RD+I EQE R N+ ++ YFD LPADMMAVITMHK
Sbjct: 181 QKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHK 240
Query: 2954 LMGLLMTSDD-HGMVRLVQASLEIGEAIEQEVRIYNFL------KKSRSNTXXXXXXXXX 2796
LMGLLMT++ +G VR+VQA+ +GEAIE E RI+ FL KKS N
Sbjct: 241 LMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPV 300
Query: 2795 ESDA--VAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLM 2622
SDA +AKE+EKL DD PWGQ+AQ KVGCRLI+LL+
Sbjct: 301 TSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLI 360
Query: 2621 ETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARH 2442
ETAYIQPPV+QL DG PDIRPAF H+LK V KDT KT+RR+GVIECDP+VR GLEK+ARH
Sbjct: 361 ETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARH 420
Query: 2441 VVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDT 2262
+VIPYMPMLVPP+NW YD+GA+LFLPS VMRTHG++ QR A+KR P KQLE V+EAL+T
Sbjct: 421 MVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNT 480
Query: 2261 LGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLK 2082
LGNTKWR+NK++ V+ +IWA GGRLA L+DRED PLP + +TEDE EI+ WKWKVK +K
Sbjct: 481 LGNTKWRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKNVK 540
Query: 2081 KENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGIL 1902
KENSERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHPHLNHLGSD+CRGIL
Sbjct: 541 KENSERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGIL 600
Query: 1901 EFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRW 1722
EFAEGRPLGKSG +WLKIH+AN+YAGGVDKLSY+GR+AFTENHLD IFDSAD+PLEGRRW
Sbjct: 601 EFAEGRPLGKSGFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDSADRPLEGRRW 660
Query: 1721 WLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAV 1542
WLGAEDPFQCL C NL++A RSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 661 WLGAEDPFQCLATCFNLAEAFRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAV 720
Query: 1541 NLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSV 1362
NLV+G+KPADVYSGIAARVL+IMR DAEKDP T P+ALHA+LLI++VDRKLVKQTVMTSV
Sbjct: 721 NLVSGEKPADVYSGIAARVLDIMRTDAEKDPGTNPNALHAKLLINEVDRKLVKQTVMTSV 780
Query: 1361 YGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDC 1182
YGVTYIGARDQIKRRLKER A+ DD L+ AS YAAK TL ALEEMF+ AR IM+WLG+C
Sbjct: 781 YGVTYIGARDQIKRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSIMAWLGEC 840
Query: 1181 AKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPP 1002
AKVIASENQ VQWTTPLGLPVVQPYR LG HLIKTSLQ+L L++ETDK+MV+RQ+TAFPP
Sbjct: 841 AKVIASENQPVQWTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQRTAFPP 900
Query: 1001 NFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYETPILE 822
NFVHSLDGSHMMMTA+ACK AGLNFAGVHDSYWTHACDVD MN+ILRE FVELYE PILE
Sbjct: 901 NFVHSLDGSHMMMTAVACKHAGLNFAGVHDSYWTHACDVDEMNRILRENFVELYEAPILE 960
Query: 821 NLLESFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
NLLE FQ+SFPKL FPPLP+RGDFDL++VL+SPYFFN
Sbjct: 961 NLLEGFQKSFPKLKFPPLPDRGDFDLRDVLESPYFFN 997
>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
lycopersicum]
Length = 993
Score = 1360 bits (3520), Expect = 0.0
Identities = 681/1001 (68%), Positives = 798/1001 (79%), Gaps = 31/1001 (3%)
Frame = -3
Query: 3620 MWRNVAKHVASSR-------NLTRFSQN--------SIIQKKTRSFELKIQSSFDFSKMG 3486
MWR ++K V S + + F+Q+ + ++ R+ L + S FS++
Sbjct: 1 MWRYISKQVYSRKLRNTHDSDFLGFAQSFRKTRPLQGLCEEGYRNPNLGVSQSSIFSRVN 60
Query: 3485 IRNGVLLSQEEQMGRRNFRYFRNPISF----------------KGFASVAEAVSSTDTEE 3354
++ L E R ++ F F + + S AEA++ST E+
Sbjct: 61 GKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCGSLGVLRSYGSAAEAIASTSEED 120
Query: 3353 DVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQA 3174
+DEIQ L+E+M+KE++ Q KQ VGGMG GKY+LLR+RQ+K+ETEAW+ A
Sbjct: 121 ----IDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYNLLRRRQIKVETEAWEDA 176
Query: 3173 AREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDH 2994
A+EY+ELL DMC+QKLAPNLPY+KSLFLGWF P +D+I EQ+ GKNRG YA +FD
Sbjct: 177 AKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRGAYAPFFDQ 236
Query: 2993 LPADMMAVITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXX 2814
LPA+MMAVITMHKLMGLLMT G R+VQA+ IGEAIE E RI+ FL+K++ N
Sbjct: 237 LPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDG 296
Query: 2813 XXXXXXESDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLI 2634
+ KE+E+L QDD KPWGQD KVGCRLI
Sbjct: 297 SLEETAGD--IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLI 354
Query: 2633 ELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEK 2454
++L+ETAYIQPP DQL D PPDIRPAF H+LK V DT+K +RR+GVI+CDPLVR+GL+K
Sbjct: 355 QILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTV--DTVKGSRRYGVIQCDPLVRKGLDK 412
Query: 2453 TARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFE 2274
TARH+VIPYMPMLVPP NW+ YD+GA+LFLPS +MRTHG++ QREA+KR P+KQLE VF+
Sbjct: 413 TARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQ 472
Query: 2273 ALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKV 2094
ALDTLGNTKWRVNKRV G++ +IWA+GGRLADLVDREDVPLP +PDTE+E EI+ WKWKV
Sbjct: 473 ALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTENEEEIKKWKWKV 532
Query: 2093 KTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLC 1914
K KKEN ERHS+RCD+ELKLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLC
Sbjct: 533 KAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 592
Query: 1913 RGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLE 1734
RGILEF+EGRPLGKSGL+WLKIH+AN+Y GGVDKLS +GR AF+ENH++DIFDSAD+PLE
Sbjct: 593 RGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSCEGRAAFSENHVEDIFDSADRPLE 652
Query: 1733 GRRWWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLG 1554
GRRWWLGAEDPFQCL CI++S+ALRS SPET+ISHMPIHQDGSCNGLQHYAALGRDKLG
Sbjct: 653 GRRWWLGAEDPFQCLATCISISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLG 712
Query: 1553 AAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTV 1374
AAAVNLVAGDKPADVYSGIAARVL+IM+ DA+KDP T P+ + ARLLI+QVDRKLVKQTV
Sbjct: 713 AAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTV 772
Query: 1373 MTSVYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSW 1194
MTSVYGVTYIGARDQIKRRLKERGAIEDD++LF A+ YAAK TLTAL EMF+AAR IMSW
Sbjct: 773 MTSVYGVTYIGARDQIKRRLKERGAIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSW 832
Query: 1193 LGDCAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKT 1014
LGDCAK+IA ENQ V+WTTPLGLPVVQPYR LG HLIKTSLQILTL+RETDKVMV+RQ+T
Sbjct: 833 LGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRT 892
Query: 1013 AFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYET 834
AFPPNFVHSLDGSHMMMTAIACK+AGL+FAGVHDSYWTHA DVD MNKILREKFVELY+
Sbjct: 893 AFPPNFVHSLDGSHMMMTAIACKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDA 952
Query: 833 PILENLLESFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
PILENLLESFQ+SFP L FPPLPERGDFDL+EVL+SPYFFN
Sbjct: 953 PILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 1358 bits (3516), Expect = 0.0
Identities = 682/1009 (67%), Positives = 792/1009 (78%), Gaps = 39/1009 (3%)
Frame = -3
Query: 3620 MWRNVAKHVASSR-------NLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLS 3462
MWR ++KH S + L FSQ S KTR + + S +G+ + S
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60
Query: 3461 Q------------EEQMGRRNFRYFRNPI--SFKG------------------FASVAEA 3378
+ EE + +N S KG + S AEA
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120
Query: 3377 VSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKI 3198
+ ST E+ +DEIQ L+E+M KE++ Q KQ +GGMG GKY+ LR+RQ+K+
Sbjct: 121 IVSTSEED----IDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKV 176
Query: 3197 ETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRG 3018
ETEAW++AA+EY+ELL DMC+QKLAPNLPYMKSLFLGWF P RD+I EQ+ GKNRG
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 3017 NYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKK 2838
YA +FD LPA+MMAVITMHKLMGLLMT G R+VQA+ IGEAIE E RI+ FL+K
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 2837 SRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQ 2658
++ + D + KE+E+L QDD KPWGQD
Sbjct: 297 TKKSNALSGDLEETPGDMM-KERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNL 355
Query: 2657 AKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDP 2478
KVGCRLI++LMETAYIQPP DQL DGPPDIRPAF H+LK V +T+K +RR+GVI+CDP
Sbjct: 356 VKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDP 413
Query: 2477 LVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPR 2298
LVR+GL+KTARH+VIPYMPMLVPP +W YDKG +LFLPS +MRTHG++ QREA+KR P+
Sbjct: 414 LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPK 473
Query: 2297 KQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETE 2118
KQLE VF+ALDTLGNTKWRVN++V G++++IWA+GGRLADLVDREDVPLP PDTEDE E
Sbjct: 474 KQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAE 533
Query: 2117 IRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHL 1938
IR WKWKVK +KKEN ERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+L
Sbjct: 534 IRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYL 593
Query: 1937 NHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIF 1758
NHLGSDLCRGILEFAEGRPLG SGL+WLKIH+AN+Y GGVDKLSY+GR+AF+ENHL+DIF
Sbjct: 594 NHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIF 653
Query: 1757 DSADKPLEGRRWWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYA 1578
DSA++PLEG+RWWLGAEDPFQCL CIN+++ALRS SPET IS+MPIHQDGSCNGLQHYA
Sbjct: 654 DSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYA 713
Query: 1577 ALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVD 1398
ALGRDKLGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA KDP P+ + ARLLI+QVD
Sbjct: 714 ALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVD 773
Query: 1397 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQ 1218
RKLVKQTVMTSVYGVTYIGARDQIK+RLKERG IEDD++LF A+ YAAK TLTAL EMF+
Sbjct: 774 RKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFE 833
Query: 1217 AARCIMSWLGDCAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDK 1038
AAR IMSWLGDCAK+IA EN V+WTTPLGLPVVQPYR LG HLIKTSLQILTL+RETDK
Sbjct: 834 AARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDK 893
Query: 1037 VMVQRQKTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILRE 858
VMV+RQ+TAFPPNFVHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHACDVD MNKILRE
Sbjct: 894 VMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILRE 953
Query: 857 KFVELYETPILENLLESFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
KFVELY+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVL+SPYFFN
Sbjct: 954 KFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1B; Flags: Precursor
Length = 1002
Score = 1358 bits (3514), Expect = 0.0
Identities = 682/1009 (67%), Positives = 791/1009 (78%), Gaps = 39/1009 (3%)
Frame = -3
Query: 3620 MWRNVAKHVASSR-------NLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLS 3462
MWR ++KH S + L FSQ S KTR + + S +G+ + S
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60
Query: 3461 Q------------EEQMGRRNFRYFRNPI--SFKG------------------FASVAEA 3378
+ EE + +N S KG + S AEA
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120
Query: 3377 VSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKI 3198
+ ST E+ +DEIQ L+E+M KE++ Q KQ +GGMG GKY+ LR+RQ+K+
Sbjct: 121 IVSTSEED----IDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKV 176
Query: 3197 ETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRG 3018
ETEAW++AA+EY+ELL DMC+QKLAPNLPYMKSLFLGWF P RD+I EQ+ GKNRG
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 3017 NYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKK 2838
YA +FD LPA+MMAVITMHKLMGLLMT G R+VQA+ IGEAIE E RI+ FL+K
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 2837 SRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQ 2658
++ + D + KE+E+L QDD KPWGQD
Sbjct: 297 TKKSNALSGDLEETPGDMM-KERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNL 355
Query: 2657 AKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDP 2478
KVGCRLI++LMETAYIQPP DQL DGPPDIRPAF H+LK V +T+K +RR+GVI+CDP
Sbjct: 356 VKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDP 413
Query: 2477 LVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPR 2298
LVR+GL+KTARH+VIPYMPMLVPP +W YDKG +LFLPS +MRTHG++ QREA+KR P+
Sbjct: 414 LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPK 473
Query: 2297 KQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETE 2118
KQLE VF+ALDTLGNTKWRVN++V G++ +IWA+GGRLADLVDREDVPLP PDTEDE E
Sbjct: 474 KQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAE 533
Query: 2117 IRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHL 1938
IR WKWKVK +KKEN ERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHP+L
Sbjct: 534 IRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYL 593
Query: 1937 NHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIF 1758
NHLGSDLCRGILEFAEGRPLG SGL+WLKIH+AN+Y GGVDKLSY+GR+AF+ENHL+DIF
Sbjct: 594 NHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIF 653
Query: 1757 DSADKPLEGRRWWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYA 1578
DSA++PLEG+RWWLGAEDPFQCL CIN+++ALRS SPET IS+MPIHQDGSCNGLQHYA
Sbjct: 654 DSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYA 713
Query: 1577 ALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVD 1398
ALGRDKLGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA KDP P+ + ARLLI+QVD
Sbjct: 714 ALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVD 773
Query: 1397 RKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQ 1218
RKLVKQTVMTSVYGVTYIGARDQIK+RLKERG IEDD++LF A+ YAAK TLTAL EMF+
Sbjct: 774 RKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFE 833
Query: 1217 AARCIMSWLGDCAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDK 1038
AAR IMSWLGDCAK+IA EN V+WTTPLGLPVVQPYR LG HLIKTSLQILTL+RETDK
Sbjct: 834 AARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDK 893
Query: 1037 VMVQRQKTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILRE 858
VMV+RQ+TAFPPNFVHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHACDVD MNKILRE
Sbjct: 894 VMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILRE 953
Query: 857 KFVELYETPILENLLESFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
KFVELY+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVL+SPYFFN
Sbjct: 954 KFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1355 bits (3507), Expect = 0.0
Identities = 671/956 (70%), Positives = 782/956 (81%), Gaps = 4/956 (0%)
Frame = -3
Query: 3566 SQNSI---IQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEEQMGRRNFRYFRNPISF-KG 3399
SQNSI I +K R E + S +G+ L S + R + + F +
Sbjct: 54 SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113
Query: 3398 FASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLL 3219
+ S AEA++ST E+ +DEIQ L+E+M+KE++ Q KQ +GGMG GKY+LL
Sbjct: 114 YGSAAEAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLL 169
Query: 3218 RKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQF 3039
R+RQ+K+ETEAW++AA+EY+ELL DMC+QKLAPNLPYMKSLFLGWF P RD+I EQ+
Sbjct: 170 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 229
Query: 3038 RRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVR 2859
GKNRG YA +FD LPA+MMAVITMHKLMGLLMT G R+VQA+ IGEAIE E R
Sbjct: 230 DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEAR 289
Query: 2858 IYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLK 2679
I+ FL+K++ + D + KE+E+L QDD K
Sbjct: 290 IHRFLEKTKKSNALSGDLEDTPGD-IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEK 348
Query: 2678 PWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRF 2499
PWGQD KVGCRLI++LMETAYIQPP DQL D PPDIRPAF H+LK V +T+K +RR+
Sbjct: 349 PWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRY 406
Query: 2498 GVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQRE 2319
GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP +W YDKGA+LFLPS +MRTHG++ QRE
Sbjct: 407 GVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQRE 466
Query: 2318 AIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQP 2139
A+KR P+KQLE VF+ALDTLGNTKWR+N++V G++ +IWA+GGRLADLVDREDVPLP +P
Sbjct: 467 AVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEP 526
Query: 2138 DTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRA 1959
D EDE +IR WKWKVK +KKEN ERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRA
Sbjct: 527 DAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRA 586
Query: 1958 YPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTE 1779
YPMHP+LNHLGSDLCRGILEFAEGRPLGKSGL+WLKIH+AN+Y GGVDKLSY+GR+AF+E
Sbjct: 587 YPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSE 646
Query: 1778 NHLDDIFDSADKPLEGRRWWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSC 1599
NH++DIFDSA++PLEG+RWWLGAEDPFQCL CIN+++ALRS SPET IS+MPIHQDGSC
Sbjct: 647 NHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSC 706
Query: 1598 NGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHAR 1419
NGLQHYAALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA KDP P+ + AR
Sbjct: 707 NGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRAR 766
Query: 1418 LLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLT 1239
LLI+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG IEDD++LF A+ YAAK TLT
Sbjct: 767 LLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLT 826
Query: 1238 ALEEMFQAARCIMSWLGDCAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILT 1059
AL EMF+AAR IMSWLGDCAK+IA EN V+WTTPLGLPVVQPYR LG HLIKTSLQILT
Sbjct: 827 ALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILT 886
Query: 1058 LRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDV 879
L+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHA DVD
Sbjct: 887 LQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQ 946
Query: 878 MNKILREKFVELYETPILENLLESFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
MNKILREKFVELY+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVL+SPYFFN
Sbjct: 947 MNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
subunit RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1354 bits (3504), Expect = 0.0
Identities = 670/956 (70%), Positives = 782/956 (81%), Gaps = 4/956 (0%)
Frame = -3
Query: 3566 SQNSI---IQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEEQMGRRNFRYFRNPISF-KG 3399
SQNSI I +K R E + S +G+ L S + R + + F +
Sbjct: 54 SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113
Query: 3398 FASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLL 3219
+ S AEA++ST E+ +DEIQ L+E+M+KE++ Q KQ +GGMG GKY+LL
Sbjct: 114 YGSAAEAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLL 169
Query: 3218 RKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQF 3039
R+RQ+K+ETEAW++AA+EY+ELL DMC+QKLAPNLPYMKSLFLGWF P RD+I EQ+
Sbjct: 170 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 229
Query: 3038 RRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVR 2859
GKNRG YA +FD LPA+MMAVITMHKLMGLLMT G R+VQA+ IGEAIE E R
Sbjct: 230 DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEAR 289
Query: 2858 IYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLK 2679
I+ FL+K++ + D + KE+E++ QDD K
Sbjct: 290 IHRFLEKTKKSNALSGDLEDTPGD-IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEK 348
Query: 2678 PWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRF 2499
PWGQD KVGCRLI++LMETAYIQPP DQL D PPDIRPAF H+LK V +T+K +RR+
Sbjct: 349 PWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRY 406
Query: 2498 GVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQRE 2319
GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP +W YDKGA+LFLPS +MRTHG++ QRE
Sbjct: 407 GVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQRE 466
Query: 2318 AIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQP 2139
A+KR P+KQLE VF+ALDTLGNTKWR+N++V G++ +IWA+GGRLADLVDREDVPLP +P
Sbjct: 467 AVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEP 526
Query: 2138 DTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRA 1959
D EDE +IR WKWKVK +KKEN ERHS+RCD+ELKLAVA KMKDEDGF+YPHNLDFRGRA
Sbjct: 527 DAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRA 586
Query: 1958 YPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTE 1779
YPMHP+LNHLGSDLCRGILEFAEGRPLGKSGL+WLKIH+AN+Y GGVDKLSY+GR+AF+E
Sbjct: 587 YPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSE 646
Query: 1778 NHLDDIFDSADKPLEGRRWWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSC 1599
NH++DIFDSA++PLEG+RWWLGAEDPFQCL CIN+++ALRS SPET IS+MPIHQDGSC
Sbjct: 647 NHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSC 706
Query: 1598 NGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHAR 1419
NGLQHYAALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA KDP P+ + AR
Sbjct: 707 NGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRAR 766
Query: 1418 LLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLT 1239
LLI+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG IEDD++LF A+ YAAK TLT
Sbjct: 767 LLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLT 826
Query: 1238 ALEEMFQAARCIMSWLGDCAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILT 1059
AL EMF+AAR IMSWLGDCAK+IA EN V+WTTPLGLPVVQPYR LG HLIKTSLQILT
Sbjct: 827 ALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILT 886
Query: 1058 LRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDV 879
L+RETDKVMV+RQ+TAFPPNFVHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHA DVD
Sbjct: 887 LQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQ 946
Query: 878 MNKILREKFVELYETPILENLLESFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
MNKILREKFVELY+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVL+SPYFFN
Sbjct: 947 MNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>ref|XP_004509767.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Cicer
arietinum]
Length = 1002
Score = 1353 bits (3503), Expect = 0.0
Identities = 679/1005 (67%), Positives = 800/1005 (79%), Gaps = 35/1005 (3%)
Frame = -3
Query: 3620 MWRNVAKHVASSR-NLT-----------RFSQNSIIQKKTRSFELKIQSSFDFSKMGIRN 3477
MW N+ K +S + NL+ RFSQ+S +K I S F G
Sbjct: 1 MWTNIVKRASSKKFNLSYSISSSSSSSLRFSQHSNFPEKILPQTRIINSRHPF--FGFSQ 58
Query: 3476 GVLLSQEEQMGRRNFRYFRNPISF--------KGFASVAEAVSSTDTEEDVSVVDEIQGL 3321
+ + E ++GR N + +P +F +G+ SVAEA+ S+DTE+D S +E+Q L
Sbjct: 59 VSIFNSENKLGRSNLSFSEDPFTFSSTSVAHFRGYGSVAEAIESSDTEDDHSGCEEVQKL 118
Query: 3320 LEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDM 3141
LE+M KE+KK EL QK N GGM KY +L++RQ+KIETEAW++AAREY+ELLEDM
Sbjct: 119 LEEMVKEEKKKPELENQKN-NSGGGMASYKYKMLKRRQIKIETEAWEEAAREYQELLEDM 177
Query: 3140 CKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITM 2961
+QKLAPNLPYMKSLFLGWF P +++I +QE + ++R +++ YF+ LP DMMAVITM
Sbjct: 178 REQKLAPNLPYMKSLFLGWFEPLKNAIADDQELCKDYRHRASHSPYFNELPPDMMAVITM 237
Query: 2960 HKLMGLLMT-SDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRS-------NTXXXXXX 2805
HKLMGLLMT S+ G R++QA+ +IGEAIE E +IY F++K++ +
Sbjct: 238 HKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGKIYRFMEKTKGKKTTTGKSAGESVLA 297
Query: 2804 XXXESDAVAKEKEK-------LXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVG 2646
+ A+EKEK L +D+ KPWGQ+AQ KVG
Sbjct: 298 PVKIDEMTAEEKEKFKKEQTRLRRKVASLIKKQKTQQAMGIVRGRDEGKPWGQEAQVKVG 357
Query: 2645 CRLIELLMETAYIQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQ 2466
RL++LL+ETAY+QPP +Q D PPDI PAF+H+LK V+ D+ ++R+GVIECDPL+++
Sbjct: 358 SRLVQLLIETAYLQPPANQFGDSPPDIYPAFKHTLKTVSADSNNGSKRYGVIECDPLIQK 417
Query: 2465 GLEKTARHVVIPYMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLE 2286
GLEKTARH+VIPYMPMLVPP NWT DKGA+LFLPS VMR HG++ QREA+KRAP+ QL+
Sbjct: 418 GLEKTARHMVIPYMPMLVPPTNWTGDDKGAYLFLPSYVMRIHGAKQQREAVKRAPKNQLK 477
Query: 2285 SVFEALDTLGNTKWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSW 2106
VFEAL+TLG+TKWRVNK V GVI +IWA GGRLADLVDR+D PLP +PDTEDE EIR W
Sbjct: 478 PVFEALNTLGDTKWRVNKSVLGVIDQIWANGGRLADLVDRDDTPLPEEPDTEDEAEIRKW 537
Query: 2105 KWKVKTLKKENSERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLG 1926
KWKVK++KKENSERHS+RCD+ELKLAVA KMK+E+GF+YPHNLDFRGRAYPMHP+LNHLG
Sbjct: 538 KWKVKSVKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPYLNHLG 597
Query: 1925 SDLCRGILEFAEGRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSAD 1746
SDLCRGILEFAEGRPLGKSG+QWLKIH+ANLY GGVDKL YDGRIAFTE+HLDDIFDSAD
Sbjct: 598 SDLCRGILEFAEGRPLGKSGMQWLKIHLANLYGGGVDKLCYDGRIAFTEDHLDDIFDSAD 657
Query: 1745 KPLEGRRWWLGAEDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGR 1566
+PLEG+RWWL AEDPFQCL ACINLS+ALRS +PETT+SHMP+HQDGSCNGLQHYAALGR
Sbjct: 658 RPLEGKRWWLQAEDPFQCLAACINLSEALRSDTPETTLSHMPVHQDGSCNGLQHYAALGR 717
Query: 1565 DKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLV 1386
DKLGAAAVNLV GD+PADVYSGIAARVLEIM+ DA KDP T P ALHAR LISQVDRKLV
Sbjct: 718 DKLGAAAVNLVGGDQPADVYSGIAARVLEIMKSDALKDPKTNPHALHARRLISQVDRKLV 777
Query: 1385 KQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARC 1206
KQTVMTSVYGVTYIGARDQIKRRLKER AIEDDS+LF AS YAAK TLTALEEMF+AAR
Sbjct: 778 KQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDSELFAASCYAAKTTLTALEEMFEAARS 837
Query: 1205 IMSWLGDCAKVIASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQ 1026
IMSWLGDCAKVIAS NQ V+W TPLGLPVVQPYR +G HLIKTSLQ+LTL+RETDKVMV+
Sbjct: 838 IMSWLGDCAKVIASTNQAVRWVTPLGLPVVQPYREIGRHLIKTSLQVLTLQRETDKVMVK 897
Query: 1025 RQKTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVE 846
RQ+TAFPPNFVHSLDGSHMMMTA+ACKKAG++FAGVHDSYWTHACDVD MN+ILREKFVE
Sbjct: 898 RQRTAFPPNFVHSLDGSHMMMTAVACKKAGMSFAGVHDSYWTHACDVDEMNRILREKFVE 957
Query: 845 LYETPILENLLESFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
LYE PILENLLE F+++FP L FPPLPERGDFDL++VL+SPYFFN
Sbjct: 958 LYEAPILENLLEDFEKTFPTLKFPPLPERGDFDLRQVLESPYFFN 1002
>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Solanum tuberosum]
Length = 1019
Score = 1352 bits (3499), Expect = 0.0
Identities = 675/993 (67%), Positives = 796/993 (80%), Gaps = 23/993 (2%)
Frame = -3
Query: 3620 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKT--RSFELKIQSSFDFSKMG 3486
MWRN+ K +S S+N T F Q+S+ + K RSF S+ F +MG
Sbjct: 31 MWRNIVKQFSSRTPQKILLTSKNRTYSFLGFGQDSVFKDKRILRSFIPVSCSNSGFLEMG 90
Query: 3485 IRNGVLLSQEEQMGRRNF------RYFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEI 3330
+N L + ++ RR + N I K +ASVAEAV SSTD EEDVSVV E+
Sbjct: 91 FQN---LGEFDEFLRRPLLCAMKSQVSNNDICRKSYASVAEAVAVSSTDAEEDVSVVGEV 147
Query: 3329 QGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELL 3150
Q LL ++ KE+KK F ++ Q+ L G+ KY L++RQVKIET+AW+ AA+EY+ELL
Sbjct: 148 QELLTELKKEEKKQFTFRRRNQRLLTSGIDRRKYPALKRRQVKIETQAWELAAKEYRELL 207
Query: 3149 EDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAV 2970
DMC+QKLAPNLPY+KSLFLGWF P RD I EQE +GK++ Y++YF LPADMMAV
Sbjct: 208 FDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMMAV 267
Query: 2969 ITMHKLMGLLMTSDDHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXES 2790
ITMHKLMGLLMT +HG R+VQA+L IG+AIEQEVRI+ FL+K+ +
Sbjct: 268 ITMHKLMGLLMTGGEHGNARVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRKMEDGE 327
Query: 2789 DAVAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAY 2610
A ++K KL QDD KPWGQDA+AKVG RLIE L++TAY
Sbjct: 328 HATLEQK-KLHKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTAY 386
Query: 2609 IQPPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIP 2430
IQ P DQLA PPDIRPAF HS + V K+T +RR+GVI+CD LV +GLE+TARH+VIP
Sbjct: 387 IQSPADQLAVDPPDIRPAFIHSTRTVAKETKSASRRYGVIQCDELVFKGLERTARHMVIP 446
Query: 2429 YMPMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNT 2250
YMPMLVPP+ WT YDKG HL+LPS VMRTHG+R QREA+KRA R QL VFEALDTLG+T
Sbjct: 447 YMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLRPVFEALDTLGST 506
Query: 2249 KWRVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENS 2070
KWR+NKRV V+ +IWA GGRLADLVDR+D PLP +PDTEDE W+WKVK++KKEN
Sbjct: 507 KWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEAVCTKWRWKVKSVKKENR 566
Query: 2069 ERHSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAE 1890
ERHS+RCD+ELKLAVA +MKDE+GFFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFA
Sbjct: 567 ERHSQRCDIELKLAVAHRMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAA 626
Query: 1889 GRPLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGA 1710
GRPLG+SGL+WLKIH+ANL+AGGVDKLS DGRIAFTE+HLDDIFDSADKPLEGRRWWL A
Sbjct: 627 GRPLGESGLRWLKIHLANLFAGGVDKLSLDGRIAFTESHLDDIFDSADKPLEGRRWWLNA 686
Query: 1709 EDPFQCLVACINLSDALRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVA 1530
EDPFQCL CINLS+A+RSSSPET ISH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLVA
Sbjct: 687 EDPFQCLAVCINLSEAVRSSSPETVISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVA 746
Query: 1529 GDKPADVYSGIAARVLEIMRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVT 1350
G+KPADVYSGIAARVL+IM DA++DP +PDA+ AR+L++QVDRKLVKQTVMTSVYGVT
Sbjct: 747 GEKPADVYSGIAARVLDIMNRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVT 806
Query: 1349 YIGARDQIKRRLKERGAIEDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVI 1170
YIGARDQIKRRLKERGAI DDS+LF A++YAAK+TLTAL EMF+AAR IM+WL +CAK+I
Sbjct: 807 YIGARDQIKRRLKERGAIADDSELFGAASYAAKVTLTALGEMFEAARSIMTWLAECAKII 866
Query: 1169 ASENQLVQWTTPLGLPVVQPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVH 990
ASEN+ V+WTTPLGLPVVQPYR +G H IKTSLQILTL+RET+KVMV+RQ+TAFPPNF+H
Sbjct: 867 ASENEPVRWTTPLGLPVVQPYRKIGRHFIKTSLQILTLQRETEKVMVKRQRTAFPPNFIH 926
Query: 989 SLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLE 810
SLDGSHMMMTA+AC++AGLNFAGVHDSYWTHACDVD +N+ILREKFVELYETPILE LLE
Sbjct: 927 SLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLE 986
Query: 809 SFQESFPKLNFPPLPERGDFDLKEVLKSPYFFN 711
SFQ S+P L+FPPLPERGDFDL++V++SPYFFN
Sbjct: 987 SFQVSYPTLSFPPLPERGDFDLRDVIESPYFFN 1019
>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Solanum lycopersicum]
Length = 1022
Score = 1350 bits (3495), Expect = 0.0
Identities = 686/1035 (66%), Positives = 813/1035 (78%), Gaps = 23/1035 (2%)
Frame = -3
Query: 3746 MSSSRTLIPTRNLCNKFDLFHFDRQNHPQPYTQFCWSKISVDMWRNVAKHVAS------- 3588
MS ++T I +L +FD F D + +P IS MWRN+ K ++
Sbjct: 1 MSCTKTPI---SLTIRFDQFT-DLETNPY--------HISPIMWRNIVKQFSTRTPQKIL 48
Query: 3587 --SRN----LTRFSQNSIIQKKT--RSFELKIQSSFDFSKMGIRN-GVLLSQEEQMGR-- 3441
S+N F +S+ + K RSF S+ F +MG +N G L +E + R
Sbjct: 49 LTSKNHAYSYLGFGLHSVFKDKRTLRSFIPVSCSNSGFLEMGFQNLGEFLPGDEFLRRPL 108
Query: 3440 ---RNFRYFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELG 3276
+ N I K +ASVAEAV SSTD EEDVSVV E+Q LL ++ KE+KK F
Sbjct: 109 LCAMKSQVSNNDICRKNYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKEEKKQFTFR 168
Query: 3275 QQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSL 3096
++KQ+ L G+ KY L +RQVKIET+AW+QAA+EY+ELL DMC+QKLAPNLPY+KSL
Sbjct: 169 RRKQRMLTSGIDRRKYPALMRRQVKIETQAWEQAAKEYRELLFDMCEQKLAPNLPYVKSL 228
Query: 3095 FLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHLPADMMAVITMHKLMGLLMTSDDHGM 2916
FLGWF P RD I EQE +GK++ Y++YF LPADMMAVITMHKLMGLLMT +HG
Sbjct: 229 FLGWFEPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMMAVITMHKLMGLLMTGGEHGN 288
Query: 2915 VRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXXXX 2736
VR+VQA+L IG+AIEQEVRI+ FL+K+ + A ++K KL
Sbjct: 289 VRVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRNMEDGEHATLEQK-KLHKKVTSLM 347
Query: 2735 XXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIRPA 2556
QDD KPWGQDA+AKVG RLIE L++TAYIQ P DQLA PPDIRPA
Sbjct: 348 KKQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTAYIQSPADQLAVDPPDIRPA 407
Query: 2555 FRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDKGA 2376
F HS + + K+T +RR+GVI+CD LV +GLE+TARH+VIPYMPMLVPP+ WT YDKG
Sbjct: 408 FIHSTRTLAKETKSASRRYGVIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGG 467
Query: 2375 HLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIWAT 2196
HL+LPS VMRTHG+R QREA+KR R QL+ VFEALDTLG+TKWR+NKRV V+ +IWA
Sbjct: 468 HLYLPSYVMRTHGARQQREAVKRTSRNQLQPVFEALDTLGSTKWRINKRVLSVVDRIWAG 527
Query: 2195 GGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVAWK 2016
GGRLADLVDR+DVPLP +PDTEDE W+WKVK++KKEN ERHS+RCD+ELKLAVA +
Sbjct: 528 GGRLADLVDRDDVPLPEEPDTEDEAVCTKWRWKVKSVKKENRERHSQRCDIELKLAVAHR 587
Query: 2015 MKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHMAN 1836
MKDE+GFFYPHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFA GRPLGKSGL+WLKIH+AN
Sbjct: 588 MKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAAGRPLGKSGLRWLKIHLAN 647
Query: 1835 LYAGGVDKLSYDGRIAFTENHLDDIFDSADKPLEGRRWWLGAEDPFQCLVACINLSDALR 1656
L+AGGVDKLS DGRIAFTE+HLDDIFDSADKPLEGR WWL AEDPFQCL CINLS+A+R
Sbjct: 648 LFAGGVDKLSLDGRIAFTESHLDDIFDSADKPLEGRCWWLNAEDPFQCLAVCINLSEAVR 707
Query: 1655 SSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEI 1476
SSSPET ISH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSGIAARVL+I
Sbjct: 708 SSSPETVISHVPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDI 767
Query: 1475 MRVDAEKDPVTYPDALHARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAI 1296
M DA++DP +PDA+ AR+L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAI
Sbjct: 768 MNRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAI 827
Query: 1295 EDDSQLFQASNYAAKITLTALEEMFQAARCIMSWLGDCAKVIASENQLVQWTTPLGLPVV 1116
DD++LF A+ YAAK+TLTAL EMF+AAR IM+WLG+CAK+IASEN+ V+WTTPLGLPVV
Sbjct: 828 ADDTELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVV 887
Query: 1115 QPYRVLGMHLIKTSLQILTLRRETDKVMVQRQKTAFPPNFVHSLDGSHMMMTAIACKKAG 936
QPYR +G H IKTSLQILTL+RET+KVMV+RQ+TAFPPNF+HSLDGSHMMMTA+AC++AG
Sbjct: 888 QPYRKIGRHFIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAG 947
Query: 935 LNFAGVHDSYWTHACDVDVMNKILREKFVELYETPILENLLESFQESFPKLNFPPLPERG 756
LNFAGVHDSYWTHACDVD +N+ILREKFVELYETPILE LLE FQ S+P L+FPPLPERG
Sbjct: 948 LNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLEGFQVSYPTLSFPPLPERG 1007
Query: 755 DFDLKEVLKSPYFFN 711
DFDL++V++SPYFFN
Sbjct: 1008 DFDLRDVIESPYFFN 1022