BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00002106
         (896 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   174   5e-41
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   170   8e-40
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   166   9e-39
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                162   2e-37
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               162   2e-37
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   161   3e-37
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...   157   5e-36
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...   157   5e-36
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   157   5e-36
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...   156   1e-35
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...   154   6e-35
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               153   8e-35
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   152   2e-34
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   152   2e-34
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]           150   5e-34
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   148   2e-33
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           148   2e-33
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   146   9e-33
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   145   2e-32
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   144   4e-32

>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  174 bits (440), Expect = 5e-41
 Identities = 95/243 (39%), Positives = 132/243 (54%), Gaps = 1/243 (0%)
 Frame = -1

Query: 896  SFDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXX 717
            +F  F  LS L+ N ++S I+ AG+  N+  +++Q+     G+ PV+YLGIPL       
Sbjct: 546  AFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRM 605

Query: 716  XXXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLC 537
                        R++SW+ + LS  G ++LI+SVL S+QVYW S L+LPKKVLK IE   
Sbjct: 606  QDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEKRL 665

Query: 536  IKFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWV 357
              FLW G   G     + W  I   K EGGLG+ +L   NKA +   IW++ S  +  W 
Sbjct: 666  RCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWT 725

Query: 356  DWV*RNMMKGRHFWTTTSPSNTSWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW-PK 180
            DWV   ++KG  FW    PS  SW  RK+L+ RE       + IG+G  T++W D W P 
Sbjct: 726  DWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVNIIGDGRATSLWFDNWHPL 785

Query: 179  GVL 171
            G L
Sbjct: 786  GPL 788


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  170 bits (430), Expect = 8e-40
 Identities = 94/268 (35%), Positives = 147/268 (54%), Gaps = 2/268 (0%)
 Frame = -1

Query: 893  FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
            F+ F  +S L+++  KS+I+ AGI  N K +I+Q    + G+LPVKYLG+PL  +     
Sbjct: 872  FEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQS 931

Query: 713  XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                       R+ SW  RFLS  G ++LIKSVL S+  +W SV  LPK  L+ IE +  
Sbjct: 932  DYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFS 991

Query: 533  KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
             FLW GP L  K   I W  + + K EGGLGL  L+  N+  + + IW + S ++ +WV 
Sbjct: 992  AFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVK 1051

Query: 353  WV*RNMMKGRHFWTTTSPSNT-SWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW-PK 180
            WV +++++   FW+    +   SW+ RKIL+ R+  +     ++ +G  T+ W+D W P 
Sbjct: 1052 WVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPL 1111

Query: 179  GVLRNNLNI*ELLYLRIHGAAKVSSLIS 96
            G L  ++     + L I   A V+ +++
Sbjct: 1112 GRLHQHMGSRGTIDLGIPNNATVAEVMN 1139


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  166 bits (421), Expect = 9e-39
 Identities = 86/236 (36%), Positives = 125/236 (52%), Gaps = 1/236 (0%)
 Frame = -1

Query: 890 DMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXXX 711
           ++F K SGL++N  K+++Y AG+ D+N+  +I       G LPV+YLG+PL  +      
Sbjct: 131 NLFAKRSGLQINMEKTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKED 190

Query: 710 XXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCIK 531
                     R+ +W  R+LS  G + LI SVL S   +W S   LP   LK I S+C  
Sbjct: 191 LSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSA 250

Query: 530 FLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVDW 351
           FLW GP L  +   + W  I + K EGGLGL +L   N   + + IW V S  + +WV W
Sbjct: 251 FLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKW 310

Query: 350 V*RNMMKGRHFWTTTSPSNT-SWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
              N++K   FW+ T  S+  SWM +K+L+ RE  +     ++ NG  T+ W D W
Sbjct: 311 SKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNW 366


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  162 bits (410), Expect = 2e-37
 Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 2/268 (0%)
 Frame = -1

Query: 893  FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
            F  F   SGL ++  KS++Y AG+ + N+  I+       G LPV+YLG+PL  +     
Sbjct: 298  FKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTA 357

Query: 713  XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                       ++ SW  R LS  G + LI SV++S+  +W S   LP   +K IE LC 
Sbjct: 358  DYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCS 417

Query: 533  KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
             FLW GP L  K   I W  + + K EGGLG+ +L   NK    + IW + S+++ +WV+
Sbjct: 418  AFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVN 477

Query: 353  WV*RNMMKGRHFWTTTSPSNT-SWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPWPK- 180
            WV   +++   FW+    S+  SWM +K+L+ R+  + M   +I +G  T+ W D W + 
Sbjct: 478  WVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQL 537

Query: 179  GVLRNNLNI*ELLYLRIHGAAKVSSLIS 96
            G L +  N    + + I  AA V+++++
Sbjct: 538  GQLVDVTNARRTIDMGIPLAATVATVLA 565


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  162 bits (409), Expect = 2e-37
 Identities = 81/237 (34%), Positives = 125/237 (52%), Gaps = 1/237 (0%)
 Frame = -1

Query: 893 FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
           FD+F K SGL+++  KS+I+ AG+   ++  +      + G LP++YLG+PL  +     
Sbjct: 278 FDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSV 337

Query: 713 XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                      R+ SW  RFLS  G   LI S++ S   +W S   LP+  ++ IE LC 
Sbjct: 338 DYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCS 397

Query: 533 KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
            FLW G +L +K   I W ++ + K EGGLGL +L+  N     + +W + S  + +WV 
Sbjct: 398 SFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVK 457

Query: 353 WV*RNMMKGRHFWTTTSPSNT-SWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
           WV  N++K   FW     +N  SW+ +KIL+ R   +     ++GNG  T+ W D W
Sbjct: 458 WVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDW 514


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  161 bits (408), Expect = 3e-37
 Identities = 79/237 (33%), Positives = 124/237 (52%), Gaps = 1/237 (0%)
 Frame = -1

Query: 893  FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
            FD F K SGL ++  KS++Y AG+    +  +        G LPV+YLG+PL  +     
Sbjct: 725  FDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTT 784

Query: 713  XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                       R+ SW  RFLS  G + LI SVL S+  +W +   LP+K ++ +E +C 
Sbjct: 785  DCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCS 844

Query: 533  KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
             FLW G  + +    I W  + + K EGGLGL +L+  N     + +W + S  N +WV 
Sbjct: 845  AFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVK 904

Query: 353  WV*RNMMKGRHFW-TTTSPSNTSWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
            WV +++++   FW    + S  SW+ +K+L+ RE  + +   ++GNG  T+ W D W
Sbjct: 905  WVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNW 961


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  157 bits (397), Expect = 5e-36
 Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 1/237 (0%)
 Frame = -1

Query: 893 FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
           FD F K S L+++  KS++Y AG+    ++ +I       G+LPV+YLG+PL  +     
Sbjct: 55  FDTFAKCSDLKISMEKSTVYLAGLSHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFSST 114

Query: 713 XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                      ++ SW  RFLS TG + LI S+L S+  +W     LP+  ++ I+ +C 
Sbjct: 115 DYLPLIDHIKQKICSWSARFLSYTGRLNLISSILWSICNFWMGAFRLPRDCIREIDKMCS 174

Query: 533 KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
            +LW G  L      I W  + + K EGGLGL +L+  N     + IW + S  + +WV 
Sbjct: 175 AYLWSGGELNTSKAKIAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVK 234

Query: 353 WV*RNMMKGRHFWTT-TSPSNTSWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
           W+  +++K   FW    + S  SWM RKIL+ R+  + +   +I NG  T+ W D W
Sbjct: 235 WIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYDDW 291


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score =  157 bits (397), Expect = 5e-36
 Identities = 83/236 (35%), Positives = 123/236 (52%), Gaps = 1/236 (0%)
 Frame = -1

Query: 890  DMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXXX 711
            ++F K SGL++N  K+++Y AG+ D+N+  +I         LPV+YLG+PL  +      
Sbjct: 643  NLFAKRSGLKINMEKTTLYTAGVSDHNRHMMISRYPFGLAQLPVRYLGLPLVTKRLTKED 702

Query: 710  XXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCIK 531
                      R+ +W  R+LS  G + LI SVL S   +W S   LP   LK I S+C  
Sbjct: 703  LSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSA 762

Query: 530  FLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVDW 351
            FLW GP L  +   + W  I + K +GGLGL +L   N   + + IW V S  + +WV W
Sbjct: 763  FLWSGPELNRRKAKVSWDDICKPK-QGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKW 821

Query: 350  V*RNMMKGRHFWTTTSPSNT-SWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
               N++K   FW+    S+  SWM +K+L+ RE  +     ++ NG  T+ W D W
Sbjct: 822  SKMNLLKQESFWSLKPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNW 877


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score =  157 bits (397), Expect = 5e-36
 Identities = 81/236 (34%), Positives = 121/236 (51%)
 Frame = -1

Query: 893 FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
           FD F K SGL+++  K++IY+AGI  +  +          G LPV+YL +PL  +     
Sbjct: 243 FDSFAKQSGLKISMAKTTIYFAGISKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQ 302

Query: 713 XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                      R+ +W  RFLS  G + L+ SVL S+  +W S   LP++ ++ I+ LC 
Sbjct: 303 DYSPLLEQIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCS 362

Query: 533 KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
            FLW GP L      I W  + R K EGGLGL +++  N     + IW + SQ + +WV 
Sbjct: 363 AFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQ 422

Query: 353 WV*RNMMKGRHFWTTTSPSNTSWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
           W+   ++K   FW+  S S  SWM +K+L+ R+  +      I NG   + W D W
Sbjct: 423 WIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDW 478


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score =  156 bits (394), Expect = 1e-35
 Identities = 81/237 (34%), Positives = 122/237 (51%), Gaps = 1/237 (0%)
 Frame = -1

Query: 893  FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
            F  F   SGL ++  KS++Y A + + N+  I+       G LPV+YLG PL  +     
Sbjct: 867  FKDFAGKSGLHISLEKSTLYLAEVSELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTA 926

Query: 713  XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                       ++ SW  R LS  G + LI SV++S+  +W S   LP   +K IE LC 
Sbjct: 927  DYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCS 986

Query: 533  KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
             FLW GP L  K   I W  + + K EGGLG+ +L   NK    + IW + S+++ +WV+
Sbjct: 987  AFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVN 1046

Query: 353  WV*RNMMKGRHFWTTTSPSNT-SWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
            WV   +++   FW+    S+  SWM +K+L  R+  + M   +I +G  T+ W D W
Sbjct: 1047 WVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEIKSGSSTSFWYDNW 1103


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score =  154 bits (388), Expect = 6e-35
 Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 1/237 (0%)
 Frame = -1

Query: 893 FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
           F+ F K SGL ++  KS++Y+AG+   + + ++       G+LPV+YLG+PL  +     
Sbjct: 107 FETFAKCSGLRISMEKSTVYFAGLSHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSST 166

Query: 713 XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                      ++ SW  RFLS  G + LI SVL S+  +W     LP++ ++ I+ +C 
Sbjct: 167 DYLPLIEHIKKKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIREIDKMCS 226

Query: 533 KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
            +LW G  L      I W  + + K EGGLGL +L+  N     + IW + S  + +WV 
Sbjct: 227 AYLWSGGDLNTSKAKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVK 286

Query: 353 WV*RNMMKGRHFWTT-TSPSNTSWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
           W+   ++K   FW    + S  SWM +K+L+ R+A   +   ++ NG  T  W D W
Sbjct: 287 WIHATLLKQVSFWAVRENTSLGSWMWKKVLKFRDAAIQLCKAEVNNGAHTFFWYDNW 343


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  153 bits (387), Expect = 8e-35
 Identities = 80/237 (33%), Positives = 120/237 (50%), Gaps = 1/237 (0%)
 Frame = -1

Query: 893  FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
            FD F K SGL ++  KS++Y AG+    K+ I        G LPV+YLG+PL  +     
Sbjct: 372  FDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSA 431

Query: 713  XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                       R+ +W  RF S  G   LIKSVL S+  +W +   LP++ ++ I+ LC 
Sbjct: 432  DYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCS 491

Query: 533  KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
             FLW G  + +    I W  + + K EGGLGL NL+  N     + +W + S  N +W  
Sbjct: 492  SFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTK 551

Query: 353  WV*RNMMKGRHFWT-TTSPSNTSWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
            WV   +++ +  W+   S S  SW+ RKIL+ R+  +     ++GNG   + W D W
Sbjct: 552  WVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHW 608


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  152 bits (384), Expect = 2e-34
 Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 1/237 (0%)
 Frame = -1

Query: 893  FDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXX 714
            F  F   SGL+++  KS+IY AG+  +++   +       G LPV+YLG+PL  +     
Sbjct: 1022 FKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTA 1081

Query: 713  XXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCI 534
                       ++ SW  R LS  G + L+ SV++S+  +W S   LP   ++ IE LC 
Sbjct: 1082 DYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCS 1141

Query: 533  KFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVD 354
             FLW GP L  K   I W  I + K EGGLG+ +L   NK    + IW + S +  +WV 
Sbjct: 1142 AFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVT 1201

Query: 353  WV*RNMMKGRHFWTTTSPSNT-SWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW 186
            W+   +++   FW+    S+  SWM +K+L+ RE  + M   ++ NG  T+ W D W
Sbjct: 1202 WIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHW 1258


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  152 bits (383), Expect = 2e-34
 Identities = 75/216 (34%), Positives = 118/216 (54%)
 Frame = -1

Query: 896  SFDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXX 717
            +F+ F K SGL+ +  KS IY+ G+       +   +Q+  GSLP +YLG+PL  +    
Sbjct: 712  AFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNF 771

Query: 716  XXXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLC 537
                        R Q W    LS  G ++L+K++L SMQ YW  +  LPKK++K +E+ C
Sbjct: 772  SQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTC 831

Query: 536  IKFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWV 357
             KFLW G    +    + W  +++ K  GGL + N+ L NKA I + +W +  +++ +WV
Sbjct: 832  RKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWV 891

Query: 356  DWV*RNMMKGRHFWTTTSPSNTSWM*RKILQNREAI 249
             WV    +K ++    T  SNTSW+ RKI ++RE +
Sbjct: 892  RWVNAYYIKRQNIENVTVSSNTSWILRKIFESRELL 927


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score =  150 bits (380), Expect = 5e-34
 Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 1/218 (0%)
 Frame = -1

Query: 830 AGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXXXXXXXXXXXXXRVQSWKIRFL 651
           AG+KDN+K  I+       G+LPV+YLG+PL  +                R+  W  R L
Sbjct: 2   AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHL 61

Query: 650 SMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCIKFLWVGPSLGNKMHCIGWRRI 471
           S  G ++LI SV+ S+  +W S   LP   +K I+S+C  FLW GP L  K   + W  +
Sbjct: 62  SFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDV 121

Query: 470 ERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVDWV*RNMMKGRHFWTTTSPSNT 291
              K EGGLG+ +L+  NK  + + IW + S  + +WV W+   +++   FW+ +  +  
Sbjct: 122 CTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTS-LWVQWLRLYLLRKGSFWSISGNTTL 180

Query: 290 -SWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPWPK 180
            SWM +KIL++R      + H I NG +T+ W D W K
Sbjct: 181 GSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 218


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  148 bits (374), Expect = 2e-33
 Identities = 89/276 (32%), Positives = 129/276 (46%), Gaps = 1/276 (0%)
 Frame = -1

Query: 896  SFDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXX 717
            + D F   SGL++N +KS ++ AG+ D ++R          G+ P++YLG+PL  +    
Sbjct: 578  TLDDFADWSGLKVNKDKSQLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRI 636

Query: 716  XXXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLC 537
                        R++SW  + LS  G  +LI SV+  +  +W S  +LPK  +K IESLC
Sbjct: 637  ADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLC 696

Query: 536  IKFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWV 357
             KFLW G   G K   + W      K EGGLG  +    NK  + R IW +  +   +W 
Sbjct: 697  SKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWA 756

Query: 356  DWV*RNMMKGRHFWTTTSPSNTSWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPWPK- 180
             W   + +    FW   +     W  + +L  R   +  I  K+GNGG  + W D W   
Sbjct: 757  QWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSL 816

Query: 179  GVLRNNLNI*ELLYLRIHGAAKVSSLISKGSWRMPL 72
            G L   L       LRI  +AKV+  I    WR+PL
Sbjct: 817  GPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPL 852


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  148 bits (374), Expect = 2e-33
 Identities = 89/276 (32%), Positives = 129/276 (46%), Gaps = 1/276 (0%)
 Frame = -1

Query: 896  SFDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXX 717
            + D F   SGL++N +KS ++ AG+ D ++R          G+ P++YLG+PL  +    
Sbjct: 578  TLDDFADWSGLKVNKDKSQLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRI 636

Query: 716  XXXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLC 537
                        R++SW  + LS  G  +LI SV+  +  +W S  +LPK  +K IESLC
Sbjct: 637  ADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLC 696

Query: 536  IKFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWV 357
             KFLW G   G K   + W      K EGGLG  +    NK  + R IW +  +   +W 
Sbjct: 697  SKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWA 756

Query: 356  DWV*RNMMKGRHFWTTTSPSNTSWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPWPK- 180
             W   + +    FW   +     W  + +L  R   +  I  K+GNGG  + W D W   
Sbjct: 757  QWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSL 816

Query: 179  GVLRNNLNI*ELLYLRIHGAAKVSSLISKGSWRMPL 72
            G L   L       LRI  +AKV+  I    WR+PL
Sbjct: 817  GPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPL 852


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  146 bits (369), Expect = 9e-33
 Identities = 70/214 (32%), Positives = 116/214 (54%)
 Frame = -1

Query: 896  SFDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXX 717
            +F  F   SGL  +  KS+IY+ G+ D   R +   + ++ G LP +YLG+PLT +    
Sbjct: 709  AFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTY 768

Query: 716  XXXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLC 537
                        R Q+W  + LS  G ++LIKS+L SMQ YW  +  L KKV++ +E +C
Sbjct: 769  AQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVC 828

Query: 536  IKFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWV 357
             KFLW G +   K   + W  I+R K  GG  + N++  N+A + + +W +  +++ +WV
Sbjct: 829  RKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWV 888

Query: 356  DWV*RNMMKGRHFWTTTSPSNTSWM*RKILQNRE 255
             W+    +K +   T    + T+W+ RKI++ R+
Sbjct: 889  RWIHSYYIKRQDILTVNISNQTTWILRKIVKARD 922


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  145 bits (367), Expect = 2e-32
 Identities = 78/244 (31%), Positives = 125/244 (51%), Gaps = 2/244 (0%)
 Frame = -1

Query: 890  DMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXXXX 711
            + F    GL++   K+++Y AG+ D++++ +        G LPV+YLG+PL  +      
Sbjct: 447  NQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSD 506

Query: 710  XXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLCIK 531
                      R+  W  R+LS  G + LI SVL S+  +W +   LP++ +  I  +   
Sbjct: 507  YSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSA 566

Query: 530  FLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWVDW 351
             LW GP L  K   + W  I + K EGGLGL +L   NK    + IW + S ++ +WV W
Sbjct: 567  LLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKW 626

Query: 350  V*RNMMKGRHFWTTTSPSNT-SWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW-PKG 177
               N++K   FW+  + S   SW+ R++L++RE  +     ++ NG +T+ W D W  KG
Sbjct: 627  TRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKG 686

Query: 176  VLRN 165
             L N
Sbjct: 687  PLIN 690


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  144 bits (364), Expect = 4e-32
 Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 2/273 (0%)
 Frame = -1

Query: 896  SFDMFGKLSGLEMNANKSSIYYAGIKDNNKRTIIQLLQIKEGSLPVKYLGIPLTEQSSXX 717
            S + F   SGL MN NK+ +Y+AG+  +   ++      K GSLPV+YLG+PL  +    
Sbjct: 615  SLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMASY-GFKLGSLPVRYLGLPLMSRKLTI 673

Query: 716  XXXXXXXXXXXXRVQSWKIRFLSMTGHMELIKSVLLSMQVYWFSVLMLPKKVLKGIESLC 537
                        R  SW +R LS  G ++L+ SV+  +  +W S  +LP   +K IESLC
Sbjct: 674  AEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLC 733

Query: 536  IKFLWVGPSLGNKMHCIGWRRIERSKMEGGLGLHNLELQNKAGITRQIWDVASQKNIIWV 357
             +FLW        +  + W ++   K EGG+GL    + N+    R IW + S    +WV
Sbjct: 734  SRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWV 793

Query: 356  DWV*RNMM-KGRHFWTTTSPSNTSWM*RKILQNREAIQYMITHKIGNGGDTNIWNDPW-P 183
             W  ++ + K   FW      + SW  + +L+ R   +  I   +GNG D + W D W P
Sbjct: 794  AWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTP 853

Query: 182  KGVLRNNLNI*ELLYLRIHGAAKVSSLISKGSW 84
             G L   L       LR+H  AK+S + +   W
Sbjct: 854  FGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGW 886