BLASTX nr result
ID: Akebia22_contig00006953
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia22_contig00006953
(1943 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera] 113 3e-60
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 112 3e-55
gb|AAB82754.1| retrofit [Oryza longistaminata] 101 1e-54
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 100 1e-54
emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera] 91 3e-54
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 103 6e-54
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 103 1e-53
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 103 1e-53
emb|CAN73071.1| hypothetical protein VITISV_032383 [Vitis vinifera] 103 1e-53
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 101 1e-53
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 103 6e-53
gb|AAC02672.1| polyprotein [Arabidopsis arenosa] 113 6e-53
emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group] 100 6e-53
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera] 98 8e-53
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 111 8e-53
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 100 1e-52
gb|AAC02666.1| polyprotein [Arabidopsis thaliana] 112 4e-52
gb|AAC02664.1| polyprotein [Arabidopsis thaliana] 112 4e-52
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana] 103 6e-52
emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera] 112 1e-51
>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
Length = 1361
Score = 113 bits (282), Expect(4) = 3e-60
Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 8/162 (4%)
Frame = +1
Query: 1117 ASMLI*HSRDGPVILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAH 1296
+S+ HS G V LLLYV+D+I++G + + FI L++ FSMKDLG+L++FLGVE
Sbjct: 1016 SSLFFYHSSLGTVYLLLYVDDMIITGSTPSLVHTFITRLSNEFSMKDLGDLHYFLGVEVQ 1075
Query: 1297 RTSSSLQLTQ-KDTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLL---PFFR----AK 1452
L L+Q K L+LL + MID +P STP G +LS EG L FR A
Sbjct: 1076 ANEKGLFLSQTKYALDLLQRASMIDAKPISTPFVVGQHLS-AEGTLFSDPTLFRSLAGAL 1134
Query: 1453 KYHSIAVPNVFYAANHVSQFMHTPQTSQYQAVKCILHYLKGT 1578
+Y +I P++ ++ N + QFMH P ++A+K IL Y+KGT
Sbjct: 1135 QYLTITRPDLSFSVNSIFQFMHAPTEDHFRALKRILRYVKGT 1176
Score = 70.1 bits (170), Expect(4) = 3e-60
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
FLHG L E VYM++P G+ HVCRL + +YGL+QAPRAWF +FS FLL+ GF S
Sbjct: 953 FLHGFLNEEVYMEQPPGYTDPQFPQHVCRLKRALYGLKQAPRAWFHRFSSFLLKHGFHSS 1012
Score = 66.6 bits (161), Expect(4) = 3e-60
Identities = 41/106 (38%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Frame = +1
Query: 478 HPIITRSRNGTCCPNLRSSFPNDILCQSLSLLFYTLHQHCLPHS-NM*ASNPKWVAAMAD 654
HP+ITR + G P L + S S LF P A +P+W++AM D
Sbjct: 803 HPMITRGKAGIFKPRLYHAMH----ISSSSQLFQAFLALKEPRGFKSAAKHPEWLSAMDD 858
Query: 655 EYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
E AL +D W+LVP ++VGC WI K H+D SIE +KA L
Sbjct: 859 EIHALKKNDTWVLVPRPQHHNVVGCRWIFKTKLHSDGSIERHKARL 904
Score = 53.1 bits (126), Expect(4) = 3e-60
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
+ F TFSP V+ TVRI+LSLAV+ GW++ QLDVKNA
Sbjct: 915 LDFGDTFSPVVRPATVRIILSLAVTSGWRLHQLDVKNA 952
>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
Length = 1384
Score = 112 bits (280), Expect(4) = 3e-55
Identities = 66/162 (40%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Frame = +1
Query: 1120 SMLI*HSRDGPVILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHR 1299
SM ++R +ILL+YV+DI+++G +++ ++ I +LNS FSMKDLG +++FLG+E
Sbjct: 1051 SMFTFNNRGIYIILLIYVDDILITGNNSSHISHLIHNLNSLFSMKDLGSVHYFLGIETVY 1110
Query: 1300 TSSSLQLTQ-KDTLELLFKTEMIDCRPSSTPVTFGSNLSLLEG-------DLLPFFRAKK 1455
L LTQ K ++LL KT++ D RP TPV G LS+ +G + A +
Sbjct: 1111 NGDHLHLTQHKYIVDLLKKTKLHDSRPYPTPVLSGKKLSVYDGVKLEDPSEYRSIVGALQ 1170
Query: 1456 YHSIAVPNVFYAANHVSQFMHTPQTSQYQAVKCILHYLKGTM 1581
Y ++ P++ YA N V QFMH+P + AVK IL YLK T+
Sbjct: 1171 YLTLTRPDICYAVNQVCQFMHSPTNVHWVAVKRILRYLKYTL 1212
Score = 66.6 bits (161), Expect(4) = 3e-55
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
FLHG L E +YM++ GF+ HVC+L + +YGL+QAPRAWF+ FS +L + GFL+S
Sbjct: 987 FLHGYLNEDIYMKQHVGFVDPKFPQHVCKLRRSLYGLKQAPRAWFRCFSDYLEELGFLES 1046
Score = 58.5 bits (140), Expect(4) = 3e-55
Identities = 35/103 (33%), Positives = 52/103 (50%)
Frame = +1
Query: 484 IITRSRNGTCCPNLRSSFPNDILCQSLSLLFYTLHQHCLPHSNM*ASNPKWVAAMADEYD 663
I+TRS++G PN + + + +L L YT A P+W AM E+
Sbjct: 846 IVTRSKHGISKPNPKYAMHSTLLALPLEPTCYTQA----------AKYPEWREAMDHEFK 895
Query: 664 ALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
AL + W LVP S ++I+ W+ IK+ +D S+E YKA L
Sbjct: 896 ALQQAGTWFLVPPSSLMNILPNKWVFRIKKRSDGSVERYKARL 938
Score = 48.9 bits (115), Expect(4) = 3e-55
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKN 929
+ +++TFSP VK T+R+VL+LAVS W IRQLDV+N
Sbjct: 949 LDYTETFSPVVKHSTIRLVLALAVSHRWPIRQLDVQN 985
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 101 bits (252), Expect(4) = 1e-54
Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 10/149 (6%)
Frame = +1
Query: 1153 VILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-K 1329
+ +L+YV+DII++ A T + LN F++KDLG+L++FLG+E + S+ + LTQ K
Sbjct: 1125 MFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEK 1184
Query: 1330 DTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLL---------PFFRAKKYHSIAVPNV 1482
+LL + M +C+P STP++ L+L EG L A +Y ++ P++
Sbjct: 1185 YANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDI 1244
Query: 1483 FYAANHVSQFMHTPQTSQYQAVKCILHYL 1569
Y+ N V QF+H P TS + AVK IL YL
Sbjct: 1245 AYSVNKVCQFLHAPTTSHWIAVKRILRYL 1273
Score = 67.0 bits (162), Expect(4) = 1e-54
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FLHG L E VYMQ+P GF ++ D+VC+L K +YGL+QAPRAW+ + S L++ GF
Sbjct: 1050 FLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGF 1106
Score = 58.5 bits (140), Expect(4) = 1e-54
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +1
Query: 634 WVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
W AM EY+AL+ +D W LVP+ +I+GC W++ IKR AD +++ YKA L
Sbjct: 949 WRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARL 1001
Score = 57.0 bits (136), Expect(4) = 1e-54
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
I + TFSP VK+ T+RI+LS+AVSRGW +RQLDV+NA
Sbjct: 1012 IDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNA 1049
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 100 bits (250), Expect(4) = 1e-54
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 10/149 (6%)
Frame = +1
Query: 1153 VILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-K 1329
+ +L+YV+DII++ A T + LN F++KDLG+L++FLG+E + + + LTQ K
Sbjct: 1116 MFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEK 1175
Query: 1330 DTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFRAKKYHSI---------AVPNV 1482
+LL + M +C+P STP++ L+L EG L A +Y SI P++
Sbjct: 1176 YANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDI 1235
Query: 1483 FYAANHVSQFMHTPQTSQYQAVKCILHYL 1569
Y+ N V QF+H P T + AVK IL YL
Sbjct: 1236 AYSVNKVCQFLHAPTTDHWTAVKRILRYL 1264
Score = 63.9 bits (154), Expect(4) = 1e-54
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FLHG L E VYMQ+P GF ++ ++VC+L K +YGL+QAPRAW+ + S L++ GF
Sbjct: 1041 FLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGF 1097
Score = 62.4 bits (150), Expect(4) = 1e-54
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +1
Query: 634 WVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
W AAM EYDAL+ +D W LVP+ +++GC W++ IKR AD +++ YKA L
Sbjct: 940 WKAAMEAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLDRYKARL 992
Score = 57.0 bits (136), Expect(4) = 1e-54
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
I + TFSP VK+ T+RI+LS+AVSRGW +RQLDV+NA
Sbjct: 1003 IDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNA 1040
>emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera]
Length = 1501
Score = 90.9 bits (224), Expect(4) = 3e-54
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 10/168 (5%)
Frame = +1
Query: 1078 FSFTVWFS*KLNYASMLI*HSRDGPVILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKD 1257
F T+ FS S+ + H + + LLLYV+DII++G + + L F L+S F+ KD
Sbjct: 987 FLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKD 1046
Query: 1258 LGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLL 1434
LG L +FLG+EA T L ++Q K ++L + +++D +P TP+ +L++
Sbjct: 1047 LGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGS--- 1103
Query: 1435 PFFR---------AKKYHSIAVPNVFYAANHVSQFMHTPQTSQYQAVK 1551
PF A +Y +I P++ +A N VSQF+H P + AVK
Sbjct: 1104 PFSNPTLYRSLVGALQYLTIXRPDIAHAVNSVSQFLHAPTIDHFLAVK 1151
Score = 69.7 bits (169), Expect(4) = 3e-54
Identities = 73/253 (28%), Positives = 103/253 (40%), Gaps = 15/253 (5%)
Frame = +1
Query: 79 HKGYQCLDPLSGKVFIPRYVIFDETCFPFVDRITKSPSIPKSLPSYFPSVCLPLYSRMLL 258
HKG++CLDP + +++I R+ FDET FP V PS S PL S +
Sbjct: 667 HKGFRCLDPTTSRLYITRHAQFDETHFPTV-------------PS---SQAQPLSSLHI- 709
Query: 259 YLKIRPFHPRSNLQHSYLHHL---------LSNHQL*AQLSPHALHYHLLILHPWHQLSH 411
SN LHH+ S+H + SP + L+ S
Sbjct: 710 ----------SNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCNICSDLVDESVQVDTSL 759
Query: 412 HWSTL-----KYHLLHPLHQCLK*LRIHPIITRSRNGTCCPNLRSSFPNDILCQSLSLLF 576
S+L H + L HP+ITR++ G ++ P ++ S L
Sbjct: 760 AGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGI----FKTRHPANLGVLGSSGLL 815
Query: 577 YTLHQHCLPHS-NM*ASNPKWVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKR 753
L P A NP W+AAM +E AL + W+LVP + +IVG W+ K
Sbjct: 816 XALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKY 875
Query: 754 HADRSIESYKALL 792
D S+E KA L
Sbjct: 876 LPDGSVERLKARL 888
Score = 69.7 bits (169), Expect(4) = 3e-54
Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FL+G L E VYM++P G+I HVC L K +YGL+QAPRAWFQ+FS FLL GF
Sbjct: 937 FLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGF 993
Score = 52.8 bits (125), Expect(4) = 3e-54
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
+ ++ TFSP VK+ TVR+VLSLAV+ W +RQLDVKNA
Sbjct: 899 LDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNA 936
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1621
Score = 103 bits (258), Expect(4) = 6e-54
Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 10/161 (6%)
Frame = +1
Query: 1120 SMLI*HSRDGPVILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHR 1299
S+ + D + +L+YV+DII++ A + +L F++KDLGEL++FLG+E +
Sbjct: 844 SLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQNLKGEFALKDLGELHYFLGIEVSK 903
Query: 1300 TSSSLQLTQ-KDTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFRAKKYHSI--- 1467
+ + L Q K +LL K MIDC+P++TP++ LSL EG LL A Y S+
Sbjct: 904 VQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGA 963
Query: 1468 ------AVPNVFYAANHVSQFMHTPQTSQYQAVKCILHYLK 1572
P++ ++ N V QF+H P T + AVK IL YLK
Sbjct: 964 LQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLK 1004
Score = 63.9 bits (154), Expect(4) = 6e-54
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FLHG L E VYM +P GF + HVC+L K +YGL+QAPRAWF + S L+ GF
Sbjct: 780 FLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 836
Score = 57.4 bits (137), Expect(4) = 6e-54
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +1
Query: 634 WVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
W AM EYDAL+ + W LVP +I+GC W++ IKR AD +++ YKA L
Sbjct: 679 WKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARL 731
Score = 56.6 bits (135), Expect(4) = 6e-54
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
I + TFSP VK+ T+RI+LSLAVS+GW +RQLDV+NA
Sbjct: 742 IDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNA 779
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 103 bits (256), Expect(4) = 1e-53
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 10/161 (6%)
Frame = +1
Query: 1120 SMLI*HSRDGPVILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHR 1299
S+ + D + +L+YV+DII++ A + L F++KDLGEL++FLG+E +
Sbjct: 1115 SLFFLNKGDITMFVLVYVDDIIVASSSERATAALLQDLKGEFALKDLGELHYFLGIEVSK 1174
Query: 1300 TSSSLQLTQ-KDTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFRAKKYHSI--- 1467
+ + L Q K +LL K MIDC+P++TP++ LSL EG LL A Y S+
Sbjct: 1175 VQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGA 1234
Query: 1468 ------AVPNVFYAANHVSQFMHTPQTSQYQAVKCILHYLK 1572
P++ ++ N V QF+H P T + AVK IL YLK
Sbjct: 1235 LQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLK 1275
Score = 63.9 bits (154), Expect(4) = 1e-53
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FLHG L E VYM +P GF + HVC+L K +YGL+QAPRAWF + S L+ GF
Sbjct: 1051 FLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 1107
Score = 57.4 bits (137), Expect(4) = 1e-53
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +1
Query: 634 WVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
W AM EYDAL+ + W LVP +I+GC W++ IKR AD +++ YKA L
Sbjct: 950 WKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARL 1002
Score = 56.6 bits (135), Expect(4) = 1e-53
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
I + TFSP VK+ T+RI+LSLAVS+GW +RQLDV+NA
Sbjct: 1013 IDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNA 1050
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 103 bits (256), Expect(4) = 1e-53
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 10/161 (6%)
Frame = +1
Query: 1120 SMLI*HSRDGPVILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHR 1299
S+ + D + +L+YV+DII++ A + L F++KDLGEL++FLG+E +
Sbjct: 1122 SLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSK 1181
Query: 1300 TSSSLQLTQ-KDTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFRAKKYHSI--- 1467
+ + L Q K +LL K MIDC+P++TP++ LSL EG LL A Y S+
Sbjct: 1182 VQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGA 1241
Query: 1468 ------AVPNVFYAANHVSQFMHTPQTSQYQAVKCILHYLK 1572
P++ ++ N V QF+H P T + AVK IL YLK
Sbjct: 1242 LQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLK 1282
Score = 63.9 bits (154), Expect(4) = 1e-53
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FLHG L E VYM +P GF + HVC+L K +YGL+QAPRAWF + S L+ GF
Sbjct: 1058 FLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 1114
Score = 57.4 bits (137), Expect(4) = 1e-53
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +1
Query: 634 WVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
W AM EYDAL+ + W LVP +I+GC W++ IKR AD +++ YKA L
Sbjct: 957 WKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARL 1009
Score = 56.6 bits (135), Expect(4) = 1e-53
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
I + TFSP VK+ T+RI+LSLAVS+GW +RQLDV+NA
Sbjct: 1020 IDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNA 1057
>emb|CAN73071.1| hypothetical protein VITISV_032383 [Vitis vinifera]
Length = 1239
Score = 103 bits (256), Expect(4) = 1e-53
Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Frame = +1
Query: 1078 FSFTVWFS*KLNYASMLI*HSRDGPVILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKD 1257
F T+ FS S+ + H + + LLLYV+DII++G + + L F L+S F+ KD
Sbjct: 870 FLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKD 929
Query: 1258 LGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLL 1434
LG L +FLG+EA T L ++Q K ++L + +++D +P TP+ +L++
Sbjct: 930 LGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGS--- 986
Query: 1435 PFFR---------AKKYHSIAVPNVFYAANHVSQFMHTPQTSQYQAVKCILHYLKGTM 1581
PF A +Y +I P++ +A N VSQF+H P + AVK IL Y+KGT+
Sbjct: 987 PFSNPTLYRSLVGALQYLTITRPDIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTL 1044
Score = 69.7 bits (169), Expect(4) = 1e-53
Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FL+G L E VYM++P G+I HVC L K +YGL+QAPRAWFQ+FS FLL GF
Sbjct: 820 FLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGF 876
Score = 55.5 bits (132), Expect(4) = 1e-53
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +1
Query: 478 HPIITRSRNGTCCPNLRSSFPNDILCQSLSLLFYTLHQHCLPHS-NM*ASNPKWVAAMAD 654
HP+ITR++ G ++ P ++ S L L P A NP W+AAM +
Sbjct: 670 HPMITRAKAGI----FKTRHPANLGVLGSSGLLSALLSSTEPKGFKSAAKNPAWLAAMDE 725
Query: 655 EYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
E AL + W+LVP + +IVG W+ K D S+E KA L
Sbjct: 726 EVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYFPDGSVERLKARL 771
Score = 52.8 bits (125), Expect(4) = 1e-53
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
+ ++ TFSP VK+ TVR+VLSLAV+ W +RQLDVKNA
Sbjct: 782 LDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNA 819
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 101 bits (252), Expect(4) = 1e-53
Identities = 58/149 (38%), Positives = 88/149 (59%), Gaps = 10/149 (6%)
Frame = +1
Query: 1153 VILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-K 1329
+ +L+YV+DII++ A T + LN F++KDLG+L++FLG+E + S+ + LTQ K
Sbjct: 1128 MFVLVYVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEK 1187
Query: 1330 DTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFRAKKYHSI---------AVPNV 1482
++L + M +C+P STP++ L+L EG L A +Y SI P++
Sbjct: 1188 YANDMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDI 1247
Query: 1483 FYAANHVSQFMHTPQTSQYQAVKCILHYL 1569
Y+ N V QF+H P TS + AVK IL YL
Sbjct: 1248 AYSVNKVCQFLHAPTTSHWIAVKRILRYL 1276
Score = 67.0 bits (162), Expect(4) = 1e-53
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FLHG L E VYMQ+P GF ++ D+VC+L+K +YGL+QAPRAW+ + S L + GF
Sbjct: 1053 FLHGFLEEEVYMQQPPGFESSSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGF 1109
Score = 56.6 bits (135), Expect(4) = 1e-53
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 634 WVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
W AM EY+AL+ +D W LVP+ +I+GC W++ +KR AD +++ YK L
Sbjct: 952 WRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRL 1004
Score = 55.5 bits (132), Expect(4) = 1e-53
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKN 929
I + TFSP VK+ T+RI+LS+AVSRGW +RQLDV+N
Sbjct: 1015 IDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQN 1051
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 103 bits (256), Expect(4) = 6e-53
Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 10/153 (6%)
Frame = +1
Query: 1153 VILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-K 1329
+ LL+YV+DII++ +A + + L+ F++KDLG+L++FLG+E H+ L L+Q K
Sbjct: 1073 IFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEK 1132
Query: 1330 DTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLL---------PFFRAKKYHSIAVPNV 1482
+LL + M +C+P STP++ LS+ EG LL A +Y ++ P++
Sbjct: 1133 YASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDI 1192
Query: 1483 FYAANHVSQFMHTPQTSQYQAVKCILHYLKGTM 1581
++ N V QF+H P T+ + AVK IL Y+K T+
Sbjct: 1193 SFSINKVCQFLHAPTTTHWAAVKRILRYVKYTV 1225
Score = 63.2 bits (152), Expect(4) = 6e-53
Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
FLHG L E VYM++P G+ K+ ++VC+L K +YGL+QAPRAW+ + S L + GF+ S
Sbjct: 998 FLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPS 1057
Score = 59.7 bits (143), Expect(4) = 6e-53
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
I + TFSP VK+ T+RIVLSLAVSRGW +RQLDVKNA
Sbjct: 960 IDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNA 997
Score = 52.4 bits (124), Expect(4) = 6e-53
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +1
Query: 622 SNPKWVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
+N W AM EY AL+ + W LVP +++ C W++ +KR AD S++ YKA L
Sbjct: 893 NNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARL 949
>gb|AAC02672.1| polyprotein [Arabidopsis arenosa]
Length = 1390
Score = 113 bits (283), Expect(4) = 6e-53
Identities = 67/148 (45%), Positives = 92/148 (62%), Gaps = 8/148 (5%)
Frame = +1
Query: 1159 LLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-T 1335
+L+YV+D++++G DTN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK
Sbjct: 1128 VLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYV 1187
Query: 1336 LELLFKTEMIDCRPSSTPVTFGSNLSLLEG---DLLPFFRA----KKYHSIAVPNVFYAA 1494
L+LL KT M+ P TP++ LSL G D +RA +Y S P++ YA
Sbjct: 1188 LDLLEKTNMLAAHPVLTPMSPTPKLSLTSGTPLDKPSEYRAVLGSLQYLSFTRPDIAYAV 1247
Query: 1495 NHVSQFMHTPQTSQYQAVKCILHYLKGT 1578
N +SQ+MH P +QA K IL YL GT
Sbjct: 1248 NRLSQYMHCPTDLHWQAAKRILRYLAGT 1275
Score = 72.0 bits (175), Expect(4) = 6e-53
Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 932 FLHGKLY-EVYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
FL G L EVY+ +P GF+ K HVCRLHK +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1051 FLQGTLSDEVYVMQPPGFVDKDNPHHVCRLHKALYGLKQAPRAWYQELRSYLLTQGFVNS 1110
Score = 53.1 bits (126), Expect(4) = 6e-53
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 825 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
F +TFSP +KS TVR VL +AVS+GW IRQ+DV NA
Sbjct: 1015 FKETFSPVIKSTTVRSVLHVAVSKGWSIRQIDVNNA 1050
Score = 39.7 bits (91), Expect(4) = 6e-53
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1
Query: 625 NPKWVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
+P W AM DE +A + + LVP + + +++GC W+ +K + ++ YKA L
Sbjct: 947 DPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVIGCKWVFTLKYLPNGVLDRYKARL 1002
>emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group]
Length = 950
Score = 100 bits (248), Expect(4) = 6e-53
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 10/149 (6%)
Frame = +1
Query: 1153 VILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-K 1329
+ +L+YV+DII++ A T + LN F++KDLG+L++FLG+E + S+ + LTQ K
Sbjct: 193 MFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGIILTQEK 252
Query: 1330 DTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFRAKKYHSI---------AVPNV 1482
+LL + M +C+P STP++ L+L EG L A +Y SI P++
Sbjct: 253 YANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDI 312
Query: 1483 FYAANHVSQFMHTPQTSQYQAVKCILHYL 1569
Y+ N V QF+H P T + VK IL YL
Sbjct: 313 AYSVNKVCQFLHAPTTRHWTGVKRILRYL 341
Score = 63.9 bits (154), Expect(4) = 6e-53
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +1
Query: 601 PHSNM*ASNPK-WVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIES 777
P +N A K W+AAM EYDAL+ ++ W LVP+ +I+GC W++ IKR AD +++
Sbjct: 5 PQNNREALGDKNWIAAMQAEYDALIKNNTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDR 64
Query: 778 YKALL 792
YKA L
Sbjct: 65 YKARL 69
Score = 62.4 bits (150), Expect(4) = 6e-53
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FLHG L E VYMQ+P GF ++ ++VC+L K +YGL+QA RAW+ + S L++ GF
Sbjct: 118 FLHGFLQEEVYMQQPPGFESSSKPNYVCKLDKALYGLKQATRAWYSRLSKKLVELGF 174
Score = 52.0 bits (123), Expect(4) = 6e-53
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKN 929
I + TFS VK+ T+RI+LS+A+SRGW +RQLDV+N
Sbjct: 80 IDYEDTFSSVVKAATIRIILSIAISRGWSLRQLDVQN 116
>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
Length = 773
Score = 98.2 bits (243), Expect(4) = 8e-53
Identities = 60/162 (37%), Positives = 95/162 (58%), Gaps = 8/162 (4%)
Frame = +1
Query: 1120 SMLI*HSRDGPVILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHR 1299
S+ I H+ +ILL+YV+DI+++G + ++ FI +L + F+++DLG L +FLG++A +
Sbjct: 383 SLFIFHTATDILILLVYVDDILVTGSNPTLVSHFISYLRTKFALRDLGPLSYFLGIQAQQ 442
Query: 1300 TSSSLQLTQ-KDTLELLFKTEMIDCRPSSTPVTFGSNLSLLEG----DLLPFFR---AKK 1455
S L L Q K +LL +T+M +P+ TP G LS +G D + R A +
Sbjct: 443 LGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGVSLSDPSEYRRTVGALQ 502
Query: 1456 YHSIAVPNVFYAANHVSQFMHTPQTSQYQAVKCILHYLKGTM 1581
Y ++ P++ +A N QFM P + AVK IL YLKGT+
Sbjct: 503 YVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTI 544
Score = 69.7 bits (169), Expect(4) = 8e-53
Identities = 71/241 (29%), Positives = 104/241 (43%), Gaps = 3/241 (1%)
Frame = +1
Query: 79 HKGYQCLDPLSGKVFIPRYVIFDETCFPFVDRITKSPSIPKSLPSYFPSVCLPLYSRMLL 258
HKGY CLD + +++I R VIF E+ FPF +S S P S PS LP
Sbjct: 84 HKGYLCLDVSTNRIYISRNVIFHESSFPF-----QSSSPPSS-----PSPHLP------- 126
Query: 259 YLKIRPFHPRSNLQHSYLHHLLSNHQL*AQLSPHALHYHLLI---LHPWHQLSHHWSTLK 429
S L+++ L A SP A+ ++ + P + S+
Sbjct: 127 ---------------SSTPALINSPSLSAPSSP-AVSSPIITSDSIPPLIPVPFATSSPA 170
Query: 430 YHLLHPLHQCLK*LRIHPIITRSRNGTCCPNLRSSFPNDILCQSLSLLFYTLHQHCLPHS 609
PL L HP++TR+++G + + SF ++ +T +
Sbjct: 171 APSPPPLP-----LNTHPMVTRAKSGI---HKKRSF----------IVQHTTEPRTYSQA 212
Query: 610 NM*ASNPKWVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKAL 789
N WV AM EY AL+ ++ W LVP S IVGC WI+ +K D SI+ +KA
Sbjct: 213 ---FKNDSWVQAMNSEYQALLRNNTWSLVPPPSSAHIVGCRWIYKLKYRPDGSIDRHKAR 269
Query: 790 L 792
L
Sbjct: 270 L 270
Score = 63.5 bits (153), Expect(4) = 8e-53
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
FL+G L E V+M +P GF+ +VC+LHK +YGL+QAPRAWFQ+ LL GF S
Sbjct: 319 FLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSS 378
Score = 46.6 bits (109), Expect(4) = 8e-53
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKN 929
I + TFSP VK T+R++L+LAVS W +RQLDV+N
Sbjct: 281 IDYFDTFSPVVKPCTIRLILALAVSFQWSVRQLDVEN 317
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 111 bits (277), Expect(3) = 8e-53
Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 8/149 (5%)
Frame = +1
Query: 1159 LLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDT 1335
+L+YV+DI++ G DT A+T I LNS FS+KDLGE+++FLG++ T++ L L+Q K
Sbjct: 1127 VLVYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYI 1186
Query: 1336 LELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFR-------AKKYHSIAVPNVFYAA 1494
+LL KT+M+ C+P+ TP+ G L + +GD + A +Y +I P + ++
Sbjct: 1187 RDLLQKTKMVHCKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSV 1246
Query: 1495 NHVSQFMHTPQTSQYQAVKCILHYLKGTM 1581
N V QFM P ++ VK IL YL+GT+
Sbjct: 1247 NKVCQFMQNPTEEHWKVVKRILRYLQGTL 1275
Score = 78.6 bits (192), Expect(3) = 8e-53
Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 11/249 (4%)
Frame = +1
Query: 79 HKGYQCLDPLSGKVFIPRYVIFDETCFPFVDRITKSP----SIPKSLPSYFPSVCLPLYS 246
HKGY+C+ +G+V+I VIF+ET FP+ I S ++ S PS P+ S
Sbjct: 780 HKGYKCMSS-NGRVYISHDVIFNETSFPYSKTIQVSSCLLSTVSPSTSHLSPSASPPVLS 838
Query: 247 RMLLYLKIRPFHPRSNLQHSYLHHLLSNHQL*AQLSPHALHYHLLILHPWHQLSHHWSTL 426
+L P + S + +++S H PHA + L P +S+ +T
Sbjct: 839 PTMLPTPTSPISSARPI--SEMDNIVSTH-------PHAPNSADTTLTPAQVVSNPVATP 889
Query: 427 KYHLLHPLHQCLK*LRI-------HPIITRSRNGTCCPNLRSSFPNDILCQSLSLLFYTL 585
H++ + I HP+ITR+++G P + + + S +L
Sbjct: 890 VQHVVSSIADASVTRTIAKDADNTHPMITRAKSGIVKPKIFIAAIREPSSVSAAL----- 944
Query: 586 HQHCLPHSNM*ASNPKWVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADR 765
+W AM EYDAL ++ W LVP +GC W++ K + D
Sbjct: 945 ------------QQDEWKKAMVAEYDALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDG 992
Query: 766 SIESYKALL 792
+++ YKA L
Sbjct: 993 TVQKYKARL 1001
Score = 67.8 bits (164), Expect(3) = 8e-53
Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Frame = +2
Query: 794 VAKGFH*EDSFLQDLQSFS*ICNCSYC--TFTCSFS-GLAN*AT*C*ECFLHGKLYE-VY 961
VAKGFH + F ++FS + S FT + S A FL+G L E V+
Sbjct: 1002 VAKGFHQQAGF-DFTETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVF 1060
Query: 962 MQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
MQ+P GFI + + VCRLHK +YGL+QAPRAWF++ LL GF+ +
Sbjct: 1061 MQQPQGFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSA 1109
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 100 bits (249), Expect(4) = 1e-52
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 10/149 (6%)
Frame = +1
Query: 1153 VILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-K 1329
+ +L+YV+DII++ A T + LN F++KDLG+L++FLG+E + S+ + LTQ K
Sbjct: 1128 MFVLVYVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEK 1187
Query: 1330 DTLELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFRAKKYHSI---------AVPNV 1482
++L + M +C P STP++ L+L EG L A +Y SI P++
Sbjct: 1188 YANDMLKRVNMSNCTPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDI 1247
Query: 1483 FYAANHVSQFMHTPQTSQYQAVKCILHYL 1569
Y+ N V QF+H P TS + AVK IL YL
Sbjct: 1248 AYSVNKVCQFLHAPTTSHWIAVKRILRYL 1276
Score = 64.7 bits (156), Expect(4) = 1e-52
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 1099
FL G L E VYMQ+P GF ++ D+VC+L+K +YGL+QAPRAW+ + S L + GF
Sbjct: 1053 FLRGFLEEEVYMQQPPGFESSSKRDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGF 1109
Score = 56.6 bits (135), Expect(4) = 1e-52
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 634 WVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
W AM EY+AL+ +D W LVP+ +I+GC W++ +KR AD +++ YK L
Sbjct: 952 WRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRL 1004
Score = 55.5 bits (132), Expect(4) = 1e-52
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKN 929
I + TFSP VK+ T+RI+LS+AVSRGW +RQLDV+N
Sbjct: 1015 IDYEDTFSPVVKAATIRIILSIAVSRGWNLRQLDVQN 1051
>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 112 bits (279), Expect(4) = 4e-52
Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 10/150 (6%)
Frame = +1
Query: 1159 LLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-T 1335
+L+YV+D++++G DTN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK
Sbjct: 1132 VLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYV 1191
Query: 1336 LELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFRAKKYHSI---------AVPNVFY 1488
L+LL KT M+ P TP++ LSL G P + +Y ++ P++ Y
Sbjct: 1192 LDLLEKTNMLAAHPVLTPMSPTPKLSLTSGK--PLDKPSEYRAVLGSLQYLLFTRPDIAY 1249
Query: 1489 AANHVSQFMHTPQTSQYQAVKCILHYLKGT 1578
A N +SQ+MH P +QA K IL YL GT
Sbjct: 1250 AVNRLSQYMHCPTDLHWQAAKRILRYLAGT 1279
Score = 69.3 bits (168), Expect(4) = 4e-52
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 932 FLHGKLY-EVYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
FL G L EVY+ +P GF+ K HVCRL+K +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1055 FLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNS 1114
Score = 53.5 bits (127), Expect(4) = 4e-52
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 825 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
F +TFSP +KS TVR VL +AVS+GW IRQ+DV NA
Sbjct: 1019 FKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNA 1054
Score = 40.8 bits (94), Expect(4) = 4e-52
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +1
Query: 625 NPKWVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
+P W AM DE +A + + LVP + + ++VGC W+ +K ++ ++ YKA L
Sbjct: 951 DPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKYLSNGVLDRYKARL 1006
>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 112 bits (279), Expect(4) = 4e-52
Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 10/150 (6%)
Frame = +1
Query: 1159 LLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-T 1335
+L+YV+D++++G DTN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK
Sbjct: 1132 VLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYV 1191
Query: 1336 LELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLLPFFRAKKYHSI---------AVPNVFY 1488
L+LL KT M+ P TP++ LSL G P + +Y ++ P++ Y
Sbjct: 1192 LDLLEKTNMLAAHPVLTPMSPTPKLSLTSGK--PLDKPSEYRAVLGSLQYLLFTRPDIAY 1249
Query: 1489 AANHVSQFMHTPQTSQYQAVKCILHYLKGT 1578
A N +SQ+MH P +QA K IL YL GT
Sbjct: 1250 AVNRLSQYMHCPTDLHWQAAKRILRYLAGT 1279
Score = 69.3 bits (168), Expect(4) = 4e-52
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 932 FLHGKLY-EVYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
FL G L EVY+ +P GF+ K HVCRL+K +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1055 FLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNS 1114
Score = 53.5 bits (127), Expect(4) = 4e-52
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 825 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
F +TFSP +KS TVR VL +AVS+GW IRQ+DV NA
Sbjct: 1019 FKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNA 1054
Score = 40.8 bits (94), Expect(4) = 4e-52
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +1
Query: 625 NPKWVAAMADEYDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
+P W AM DE +A + + LVP + + ++VGC W+ +K ++ ++ YKA L
Sbjct: 951 DPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKYLSNGVLDRYKARL 1006
>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
Length = 1429
Score = 103 bits (257), Expect(4) = 6e-52
Identities = 68/163 (41%), Positives = 95/163 (58%), Gaps = 9/163 (5%)
Frame = +1
Query: 1117 ASMLI*HSRDGPVILLLYVNDIILSGPDTNALT-GFIGHLNS*FSMKDLGELYFFLGVEA 1293
AS+ I + + + +L+YV+DII++G NAL F L S FS+KDLG L +FLG+EA
Sbjct: 1097 ASLFIYNRHNTFMYVLVYVDDIIIAGE--NALVQAFNASLASRFSLKDLGPLSYFLGIEA 1154
Query: 1294 HRTSSSLQLTQKDTL-ELLFKTEMIDCRPSSTPVTFGSNLSLLEGDLL-------PFFRA 1449
RTS L L Q+ + +LL K M+D +P STP++ LSLL G L +
Sbjct: 1155 TRTSRGLHLMQRKYITDLLKKHNMLDTKPVSTPMSPTPKLSLLSGTALDDATEYRTVLGS 1214
Query: 1450 KKYHSIAVPNVFYAANHVSQFMHTPQTSQYQAVKCILHYLKGT 1578
+Y + P++ +A N +SQFMH P +QA K IL YL GT
Sbjct: 1215 LQYLAFTRPDIAFAVNRLSQFMHRPTNEHWQAAKRILRYLAGT 1257
Score = 74.7 bits (182), Expect(4) = 6e-52
Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
FL G L E VY+ +P GFI + R HVCRL+K +YGL+QAPRAW+Q+ FLLQ GF+ S
Sbjct: 1034 FLQGTLNEEVYVSQPPGFIDRDRPSHVCRLNKALYGLKQAPRAWYQELRRFLLQAGFVNS 1093
Score = 49.7 bits (117), Expect(4) = 6e-52
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
I +S+TFSP +KS T+R VL +AV R W I Q+D+ NA
Sbjct: 996 IDYSETFSPVIKSTTIRTVLEVAVKRNWSIHQVDINNA 1033
Score = 47.0 bits (110), Expect(4) = 6e-52
Identities = 31/105 (29%), Positives = 48/105 (45%)
Frame = +1
Query: 478 HPIITRSRNGTCCPNLRSSFPNDILCQSLSLLFYTLHQHCLPHSNM*ASNPKWVAAMADE 657
HP+ TR++N P + + L S + T+ Q +P W AM++E
Sbjct: 890 HPMRTRAKNQITKPKTKFNLTTS-LTSSKPTIPTTVAQAL--------KDPNWRNAMSEE 940
Query: 658 YDALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKALL 792
+A M + W LV + ++ C WI +K + D SI YKA L
Sbjct: 941 INAQMKNHTWDLVSPEEAKHVISCKWIFTLKYNVDGSIARYKARL 985
>emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera]
Length = 1556
Score = 112 bits (281), Expect(4) = 1e-51
Identities = 66/163 (40%), Positives = 101/163 (61%), Gaps = 9/163 (5%)
Frame = +1
Query: 1120 SMLI*HSRDGPVILLLYVNDIILSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHR 1299
S+ I HS G +ILLLYV+DI+L+G T ++ FI L+S F+MKDLG++++FLG+E +
Sbjct: 1182 SLFIFHSNLGSLILLLYVDDILLTGSSTALVSTFIQLLSSEFAMKDLGQIHYFLGIEISQ 1241
Query: 1300 TSSSLQLTQKD-TLELLFKTEMIDCRPSSTPVTFGS----NLSLLEGDLLPFFR----AK 1452
T+ L L+Q +L + M+DC+P STP+ + N LLE +FR A
Sbjct: 1242 TADGLHLSQSHYAFTILERANMVDCKPMSTPLEAKTKTLPNSVLLEDP--SYFRGLVGAL 1299
Query: 1453 KYHSIAVPNVFYAANHVSQFMHTPQTSQYQAVKCILHYLKGTM 1581
+Y ++ P++ Y+ N+ SQFMH P + V+ IL Y+KGT+
Sbjct: 1300 QYLTLTRPDLSYSVNYASQFMHAPTLVHLKMVRRILRYVKGTI 1342
Score = 67.4 bits (163), Expect(4) = 1e-51
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +2
Query: 932 FLHGKLYE-VYMQKPTGFIGKARHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 1108
FLHG + E ++M++P G HVC+L K +YGL+QAPRAWF +FS FLL+ GF S
Sbjct: 1118 FLHGLISEDIHMEQPPGMADLEHPTHVCKLQKALYGLKQAPRAWFDRFSAFLLKYGFFCS 1177
Score = 47.4 bits (111), Expect(4) = 1e-51
Identities = 20/38 (52%), Positives = 31/38 (81%)
Frame = +3
Query: 819 IPFSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 932
+ +++TFSP +K T+R+VL++A+ + W IRQLDVKNA
Sbjct: 1080 LDYTETFSPVIKPGTIRMVLTIALVKKWPIRQLDVKNA 1117
Score = 46.2 bits (108), Expect(4) = 1e-51
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +1
Query: 484 IITRSRNGTCCPNLRSSFPNDILCQSLSLLFYTLHQHCLPHSNM*A-SNPKWVAAMADEY 660
+ITRS+ G PN + + + S+ PH+ A ++P W AAM +E
Sbjct: 975 MITRSQRGIIKPNPKYALTSTTNSTSIPRE---------PHNIRDALAHPGWKAAMDEEL 1025
Query: 661 DALMPSDKWLLVPHSHSISIVGCWWIHNIKRHADRSIESYKA 786
AL + W+LVP + ++ ++G W+ K D S++ KA
Sbjct: 1026 QALHTNKTWVLVPRTSNMHVIGSKWVFKPKLKPDGSLDRLKA 1067