BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00031200
         (1442 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-...   369   5e-99
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ...   355   4e-95
gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sin...   353   3e-94
ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-...   352   4e-94
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   352   5e-94
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   350   2e-93
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   345   6e-92
ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB ...   345   7e-92
gb|KJB46073.1| hypothetical protein B456_007G347300 [Gossypium r...   344   1e-91
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ...   344   1e-91
gb|KJB46069.1| hypothetical protein B456_007G347300 [Gossypium r...   344   1e-91
gb|KDO49413.1| hypothetical protein CISIN_1g007404mg [Citrus sin...   338   2e-90
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac...   337   2e-89
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ...   335   6e-89
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   321   1e-84
ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB ...   320   2e-84
ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-...   318   6e-84
gb|KDO49417.1| hypothetical protein CISIN_1g007404mg [Citrus sin...   318   6e-84
gb|KDO49416.1| hypothetical protein CISIN_1g007404mg [Citrus sin...   318   6e-84
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   318   1e-83

>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
            nucifera]
          Length = 584

 Score =  369 bits (946), Expect = 5e-99
 Identities = 211/432 (48%), Positives = 258/432 (59%), Gaps = 12/432 (2%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIHS---------HTFFLKNRQPVCFQPQCSLPMTSTM--T 327
            MAC+LP FK    +IS HFR H          +    K+R  + FQ QC L  T+T   T
Sbjct: 1    MACLLPQFKCSPDTISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTT 60

Query: 328  TIVGLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXXXX 507
            T+V +EKLR+P+ ESH  S+A++RPL+Y GA G P K   E+TL  E + +G        
Sbjct: 61   TLVDVEKLRMPSLESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALIAAA 120

Query: 508  XXXXXXXXXXXXXXXXXX-LMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNV 684
                               LM  ++ S+ + +  +D  + S+  +L++A LT+    G +
Sbjct: 121  AAEAVALAKEAVEVAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEVGRI 180

Query: 685  GFDSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXX 864
               S+ +E  Q+EE  V+F  ++ D LD +D+E           IAVRSGRQTE      
Sbjct: 181  DH-SVGLESRQEEEQSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQARRA 239

Query: 865  XXXXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGV 1044
                                    ALQ+IDYSDPLRY                     G+
Sbjct: 240  RAMEKASTNVLSVKSGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSEGI 299

Query: 1045 QVLMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVI 1224
            Q L+KLE LH+EL ERCG +PTF QWAAAAGVDQ+TLR+ LN+GI CKDKMIKSNIRLVI
Sbjct: 300  QDLLKLEKLHEELAERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVI 359

Query: 1225 SIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 1404
            SIAKNYQGAGMNLQDLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 360  SIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 419

Query: 1405 TIRLPFHMVEAT 1440
            TIRLPFHMVEAT
Sbjct: 420  TIRLPFHMVEAT 431


>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
            gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
            polymerase sigma factor sigB [Jatropha curcas]
            gi|643732514|gb|KDP39610.1| hypothetical protein
            JCGZ_02630 [Jatropha curcas]
          Length = 577

 Score =  355 bits (912), Expect = 4e-95
 Identities = 205/427 (48%), Positives = 247/427 (57%), Gaps = 7/427 (1%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIH-----SHTFFLKNRQPVCFQPQCSLPMTS--TMTTIVG 339
            M+C+LP FK    + S HFR H     +     K+R+PVCF+ QC L  TS  T T ++ 
Sbjct: 1    MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLD 60

Query: 340  LEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXXXXXXXX 519
            LEKLRLP+FE+H  S+    P TY G+IG P KE   STL TE + +G            
Sbjct: 61   LEKLRLPSFEAHPDSLVANSPWTYVGSIGPP-KETFGSTLATETLITGDDAVIAAAAAEA 119

Query: 520  XXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNVGFDSM 699
                           +      ++      +IP+ ++ +  +    T+      +G DS+
Sbjct: 120  VALARAAAKVAKDAAILVKSFPSSEAESKLEIPSIADVSS-RWPQFTETDRARIIG-DSV 177

Query: 700  DVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXXXXX 879
              E    EE+P++ P +E D+L+PT +E           IAVRS RQTE           
Sbjct: 178  TAETGSREEHPMQHPTKESDHLEPTHEELELLQKQLSEGIAVRSRRQTERKERRTRAAEK 237

Query: 880  XXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQVLMK 1059
                                LQE+DYSDPLRY                     G+Q L+K
Sbjct: 238  AAANVMSWKSGSTSKKKRGPLQEVDYSDPLRYLRGTTSTSKLLTATEELELSEGIQDLLK 297

Query: 1060 LENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISIAKN 1239
            LE LH+EL ERCG +PTF QWAAAAGVDQ+TLR  LN+GI CKD+MIKSNIRLVISIAKN
Sbjct: 298  LERLHEELAERCGGQPTFQQWAAAAGVDQKTLRTRLNYGISCKDRMIKSNIRLVISIAKN 357

Query: 1240 YQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 1419
            YQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
Sbjct: 358  YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 417

Query: 1420 FHMVEAT 1440
            FHMVEAT
Sbjct: 418  FHMVEAT 424


>gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
          Length = 605

 Score =  353 bits (905), Expect = 3e-94
 Identities = 206/432 (47%), Positives = 254/432 (58%), Gaps = 10/432 (2%)
 Frame = +1

Query: 175  KTMACMLPHFKSPTHSISTHFR-IHSHTFFL----KNRQPVCFQPQCSL----PMTST-M 324
            K M+C+LP FK    + S HFR +H+H        K+++P+CF+  C L    P TST M
Sbjct: 22   KNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAM 81

Query: 325  TTIVGLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXXX 504
            TT++ +EKLRLP+ E+H +++A  R  TY GA+G   +E+L ++L TE + S        
Sbjct: 82   TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141

Query: 505  XXXXXXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNV 684
                               LM  +  SA    + A I + ++ N    A LT+      +
Sbjct: 142  SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASII 200

Query: 685  GFDSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXX 864
            G DS+ VE   +EE   + P+ +  +L+PT +E           IAVRS RQTE      
Sbjct: 201  G-DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 259

Query: 865  XXXXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGV 1044
                                   P++QE+DYSDPLRY                    AG+
Sbjct: 260  RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319

Query: 1045 QVLMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVI 1224
            Q L+KLE L + L+ERCG  PTF QWAAAAGVDQR LR+ LN+GI CKDKMI SNIRLVI
Sbjct: 320  QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379

Query: 1225 SIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 1404
            SIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 380  SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439

Query: 1405 TIRLPFHMVEAT 1440
            TIRLPFHMVEAT
Sbjct: 440  TIRLPFHMVEAT 451


>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
          Length = 572

 Score =  352 bits (904), Expect = 4e-94
 Identities = 205/429 (47%), Positives = 242/429 (56%), Gaps = 9/429 (2%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIHSHTFF------LKNRQPVCFQPQCSLPMTSTM--TTIV 336
            MAC+LP FK    ++S HF+ H H         LK R  +CF+ QC L  T+    TT+V
Sbjct: 1    MACLLPQFKCSPDTLSIHFKTHQHQHHYSNNSQLKARDLLCFRTQCILSTTTATMTTTVV 60

Query: 337  GLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTE-IIPSGXXXXXXXXXX 513
              EKLR+P+ E+H+ S+  +RPLTY GAI  P K   E+TL TE +I             
Sbjct: 61   DDEKLRMPSLEAHLISVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEALIAAAAVE 120

Query: 514  XXXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNVGFD 693
                            LM    PS+ +     DIP+  +    + A L +I         
Sbjct: 121  AVALAKAAVEIAKDAALMVSTNPSSKSDKWPPDIPSELDTYWHETAQLNEIE-------- 172

Query: 694  SMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXXX 873
               V+ +         P E+ D LDPTD+E           IAVRSGRQTE         
Sbjct: 173  --QVDMVHHSLGAESRPKEDSDYLDPTDEELKLLQMQLSKSIAVRSGRQTERRARRARAA 230

Query: 874  XXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQVL 1053
                                 ALQ++DYSDPLRY                     G+Q L
Sbjct: 231  EKVAANVVAVKSGSSSRKKRSALQDVDYSDPLRYLRGTTSTSRLLTATEELEFSEGIQDL 290

Query: 1054 MKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISIA 1233
            +KLE L++EL ER G +PTF QWAAAAG+DQ+TLR+ LN+GI CKDKMIKSNIRLVISIA
Sbjct: 291  LKLEKLYEELAERYGGQPTFAQWAAAAGIDQKTLRKRLNYGILCKDKMIKSNIRLVISIA 350

Query: 1234 KNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 1413
            KNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 351  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 410

Query: 1414 LPFHMVEAT 1440
            LPFHMVEAT
Sbjct: 411  LPFHMVEAT 419


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  352 bits (903), Expect = 5e-94
 Identities = 206/432 (47%), Positives = 253/432 (58%), Gaps = 10/432 (2%)
 Frame = +1

Query: 175  KTMACMLPHFKSPTHSISTHFR-IHSHTFFL----KNRQPVCFQPQCSL----PMTST-M 324
            K M+C+LP FK    + S HFR +H+H        K+++P+CF+  C L    P TST M
Sbjct: 22   KNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAM 81

Query: 325  TTIVGLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXXX 504
            TT++ +EKLRLP+ E+H +++A  R  TY GA+G   +E+L ++L TE + S        
Sbjct: 82   TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141

Query: 505  XXXXXXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNV 684
                               LM  +  SA    + A I   ++ N    A LT+      +
Sbjct: 142  SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISLSADTNTSMWAQLTERERASII 200

Query: 685  GFDSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXX 864
            G DS+ VE   +EE   + P+ +  +L+PT +E           IAVRS RQTE      
Sbjct: 201  G-DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 259

Query: 865  XXXXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGV 1044
                                   P++QE+DYSDPLRY                    AG+
Sbjct: 260  RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319

Query: 1045 QVLMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVI 1224
            Q L+KLE L + L+ERCG  PTF QWAAAAGVDQR LR+ LN+GI CKDKMI SNIRLVI
Sbjct: 320  QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379

Query: 1225 SIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 1404
            SIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 380  SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439

Query: 1405 TIRLPFHMVEAT 1440
            TIRLPFHMVEAT
Sbjct: 440  TIRLPFHMVEAT 451


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  350 bits (898), Expect = 2e-93
 Identities = 205/432 (47%), Positives = 253/432 (58%), Gaps = 10/432 (2%)
 Frame = +1

Query: 175  KTMACMLPHFKSPTHSISTHFR-IHSHTFFL----KNRQPVCFQPQCSL----PMTST-M 324
            K M+C+LP FK    + S HFR +H+H        K+++P+CF+  C L    P TST M
Sbjct: 22   KNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAM 81

Query: 325  TTIVGLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXXX 504
            TT++ +EKLRLP+ E+H +++A  R  TY GA+G   +E+L ++L TE + S        
Sbjct: 82   TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141

Query: 505  XXXXXXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNV 684
                               LM  +  SA    + A I   ++ +    A LT+      +
Sbjct: 142  SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISLSADTSTSMWAQLTERERASII 200

Query: 685  GFDSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXX 864
            G DS+ VE   +EE   + P+ +  +L+PT +E           IAVRS RQTE      
Sbjct: 201  G-DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 259

Query: 865  XXXXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGV 1044
                                   P++QE+DYSDPLRY                    AG+
Sbjct: 260  RAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319

Query: 1045 QVLMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVI 1224
            Q L+KLE L + L+ERCG  PTF QWAAAAGVDQR LR+ LN+GI CKDKMI SNIRLVI
Sbjct: 320  QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379

Query: 1225 SIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 1404
            SIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 380  SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439

Query: 1405 TIRLPFHMVEAT 1440
            TIRLPFHMVEAT
Sbjct: 440  TIRLPFHMVEAT 451


>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 578

 Score =  345 bits (885), Expect = 6e-92
 Identities = 203/430 (47%), Positives = 250/430 (58%), Gaps = 10/430 (2%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIHSHTFFLKNRQPVCFQPQCSLPMTSTMTT----IVGLEK 348
            M+C+LP FK    + S  FR H H+   K+++ +CF+ QC L  TS+ +T    ++ +EK
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRAH-HSHHSKHKESICFRSQCVLSTTSSTSTATTAVLDVEK 59

Query: 349  LRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTE-IIPSGXXXXXXXXXXXXXX 525
            LRLP+FE+H +S+ T+RP TYTGA G P +    +TL TE ++ S               
Sbjct: 60   LRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVAL 119

Query: 526  XXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQL--KEAMLTDITLTGNVG---F 690
                        +M  N  SA T  ++   P  S  + L  K  + T+    G VG    
Sbjct: 120  ARAAAKVAKDAAIMVKNHSSAKTEMKS---PGSSATDTLTSKWGLFTEAERAGIVGDYVS 176

Query: 691  DSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXX 870
            D +++E+   E+N  +    E D L+PT++E           IAVRS RQ E        
Sbjct: 177  DELEMEEDDFEQNSTK----ESDELEPTNEELKLLEEQLSRSIAVRSNRQPERKAKRTRA 232

Query: 871  XXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQV 1050
                                  ALQ+IDYSDPLRY                     G+Q 
Sbjct: 233  AEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQD 292

Query: 1051 LMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISI 1230
            L+KLE LH+EL ERCG  PTF QWAAAA VD++TLR+ LN+G  CKDKMIKSNIRLVISI
Sbjct: 293  LLKLEVLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICKDKMIKSNIRLVISI 352

Query: 1231 AKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 1410
            AKNYQGAGMNLQDLVQEGCRGL+RG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 353  AKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 412

Query: 1411 RLPFHMVEAT 1440
            RLPFHMVEAT
Sbjct: 413  RLPFHMVEAT 422


>ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
            gi|296090195|emb|CBI40014.3| unnamed protein product
            [Vitis vinifera]
          Length = 575

 Score =  345 bits (884), Expect = 7e-92
 Identities = 194/426 (45%), Positives = 248/426 (58%), Gaps = 6/426 (1%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIHSHTFFLKNRQPVCFQPQCSL-----PMTSTMTTIVGLE 345
            M+C+LP FK P  + STH ++H      KNR+ + F+ QC+L     P++++ T ++ +E
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLH---ILSKNREAIYFRVQCALSTTSPPLSTSTTAVLDIE 57

Query: 346  KLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTE-IIPSGXXXXXXXXXXXXX 522
            KLRLP+ ESH +S+A  RP TY G +G P + + E+TL  E ++ S              
Sbjct: 58   KLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVA 117

Query: 523  XXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNVGFDSMD 702
                          + G   SA +  + A   +G + +Q +    T+    G +G DS+ 
Sbjct: 118  LAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG-DSVG 176

Query: 703  VEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXXXXXX 882
             E    + N ++   E+ D+L+PT +E           I VRS RQ E            
Sbjct: 177  AETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 236

Query: 883  XXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQVLMKL 1062
                              +LQE+DYSDPLRY                     G+Q L+KL
Sbjct: 237  SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 296

Query: 1063 ENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISIAKNY 1242
            E L ++L ER G +PTF QWAAAAGVDQ+TLR+  N+GI+CKDKMIKSNIRLVISIAKNY
Sbjct: 297  EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 356

Query: 1243 QGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 1422
            QGAGMN+QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 357  QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 416

Query: 1423 HMVEAT 1440
            HMVEAT
Sbjct: 417  HMVEAT 422


>gb|KJB46073.1| hypothetical protein B456_007G347300 [Gossypium raimondii]
          Length = 560

 Score =  344 bits (883), Expect = 1e-91
 Identities = 203/430 (47%), Positives = 249/430 (57%), Gaps = 10/430 (2%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIHSHTFFLKNRQPVCFQPQCSLPMTSTM----TTIVGLEK 348
            M+C+LP FK    + S  FR H H+   K+++ +CF+ QC L  TS+     T ++ +EK
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRAH-HSHHSKHKESICFRSQCVLSTTSSTSMATTAVLDVEK 59

Query: 349  LRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTE-IIPSGXXXXXXXXXXXXXX 525
            LRLP+FE+H +S+ T+RP TYTGA G P +    +TL TE ++ S               
Sbjct: 60   LRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVAL 119

Query: 526  XXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQL--KEAMLTDITLTGNVG---F 690
                        +M  N  SA T  ++   P  S  + L  K  + T+    G VG    
Sbjct: 120  ARAAAKVAKDAAIMVKNHGSAKTEMKS---PGSSATDTLTSKWGLFTEAERAGIVGDYVS 176

Query: 691  DSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXX 870
            D +++E+   E+N  +    E D L+PT++E           IAVRS RQTE        
Sbjct: 177  DELELEEDHLEQNSTK----ESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRA 232

Query: 871  XXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQV 1050
                                  ALQ+IDYSDPLRY                     G+Q 
Sbjct: 233  AEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQD 292

Query: 1051 LMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISI 1230
            L+KLE LH+EL ERCG  PTF QWAAAA VD++TLR+ LN+G  C DKMIKSNIRLVISI
Sbjct: 293  LLKLEGLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISI 352

Query: 1231 AKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 1410
            AKNYQGAGMNLQDLVQEGCRGL+RG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 353  AKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 412

Query: 1411 RLPFHMVEAT 1440
            RLPFHMVEAT
Sbjct: 413  RLPFHMVEAT 422


>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
            gi|763778947|gb|KJB46070.1| hypothetical protein
            B456_007G347300 [Gossypium raimondii]
          Length = 578

 Score =  344 bits (883), Expect = 1e-91
 Identities = 203/430 (47%), Positives = 249/430 (57%), Gaps = 10/430 (2%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIHSHTFFLKNRQPVCFQPQCSLPMTSTM----TTIVGLEK 348
            M+C+LP FK    + S  FR H H+   K+++ +CF+ QC L  TS+     T ++ +EK
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRAH-HSHHSKHKESICFRSQCVLSTTSSTSMATTAVLDVEK 59

Query: 349  LRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTE-IIPSGXXXXXXXXXXXXXX 525
            LRLP+FE+H +S+ T+RP TYTGA G P +    +TL TE ++ S               
Sbjct: 60   LRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVAL 119

Query: 526  XXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQL--KEAMLTDITLTGNVG---F 690
                        +M  N  SA T  ++   P  S  + L  K  + T+    G VG    
Sbjct: 120  ARAAAKVAKDAAIMVKNHGSAKTEMKS---PGSSATDTLTSKWGLFTEAERAGIVGDYVS 176

Query: 691  DSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXX 870
            D +++E+   E+N  +    E D L+PT++E           IAVRS RQTE        
Sbjct: 177  DELELEEDHLEQNSTK----ESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRA 232

Query: 871  XXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQV 1050
                                  ALQ+IDYSDPLRY                     G+Q 
Sbjct: 233  AEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQD 292

Query: 1051 LMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISI 1230
            L+KLE LH+EL ERCG  PTF QWAAAA VD++TLR+ LN+G  C DKMIKSNIRLVISI
Sbjct: 293  LLKLEGLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISI 352

Query: 1231 AKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 1410
            AKNYQGAGMNLQDLVQEGCRGL+RG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 353  AKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 412

Query: 1411 RLPFHMVEAT 1440
            RLPFHMVEAT
Sbjct: 413  RLPFHMVEAT 422


>gb|KJB46069.1| hypothetical protein B456_007G347300 [Gossypium raimondii]
          Length = 498

 Score =  344 bits (883), Expect = 1e-91
 Identities = 203/430 (47%), Positives = 249/430 (57%), Gaps = 10/430 (2%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIHSHTFFLKNRQPVCFQPQCSLPMTSTM----TTIVGLEK 348
            M+C+LP FK    + S  FR H H+   K+++ +CF+ QC L  TS+     T ++ +EK
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRAH-HSHHSKHKESICFRSQCVLSTTSSTSMATTAVLDVEK 59

Query: 349  LRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTE-IIPSGXXXXXXXXXXXXXX 525
            LRLP+FE+H +S+ T+RP TYTGA G P +    +TL TE ++ S               
Sbjct: 60   LRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVAL 119

Query: 526  XXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQL--KEAMLTDITLTGNVG---F 690
                        +M  N  SA T  ++   P  S  + L  K  + T+    G VG    
Sbjct: 120  ARAAAKVAKDAAIMVKNHGSAKTEMKS---PGSSATDTLTSKWGLFTEAERAGIVGDYVS 176

Query: 691  DSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXX 870
            D +++E+   E+N  +    E D L+PT++E           IAVRS RQTE        
Sbjct: 177  DELELEEDHLEQNSTK----ESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRA 232

Query: 871  XXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQV 1050
                                  ALQ+IDYSDPLRY                     G+Q 
Sbjct: 233  AEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQD 292

Query: 1051 LMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISI 1230
            L+KLE LH+EL ERCG  PTF QWAAAA VD++TLR+ LN+G  C DKMIKSNIRLVISI
Sbjct: 293  LLKLEGLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISI 352

Query: 1231 AKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 1410
            AKNYQGAGMNLQDLVQEGCRGL+RG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 353  AKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 412

Query: 1411 RLPFHMVEAT 1440
            RLPFHMVEAT
Sbjct: 413  RLPFHMVEAT 422


>gb|KDO49413.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
            gi|641830324|gb|KDO49414.1| hypothetical protein
            CISIN_1g007404mg [Citrus sinensis]
          Length = 458

 Score =  338 bits (868), Expect(2) = 2e-90
 Identities = 199/425 (46%), Positives = 247/425 (58%), Gaps = 10/425 (2%)
 Frame = +1

Query: 175  KTMACMLPHFKSPTHSISTHFR-IHSHTFFL----KNRQPVCFQPQCSL----PMTST-M 324
            K M+C+LP FK    + S HFR +H+H        K+++P+CF+  C L    P TST M
Sbjct: 22   KNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAM 81

Query: 325  TTIVGLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXXX 504
            TT++ +EKLRLP+ E+H +++A  R  TY GA+G   +E+L ++L TE + S        
Sbjct: 82   TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141

Query: 505  XXXXXXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNV 684
                               LM  +  SA    + A I + ++ N    A LT+      +
Sbjct: 142  SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASII 200

Query: 685  GFDSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXX 864
            G DS+ VE   +EE   + P+ +  +L+PT +E           IAVRS RQTE      
Sbjct: 201  G-DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 259

Query: 865  XXXXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGV 1044
                                   P++QE+DYSDPLRY                    AG+
Sbjct: 260  RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319

Query: 1045 QVLMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVI 1224
            Q L+KLE L + L+ERCG  PTF QWAAAAGVDQR LR+ LN+GI CKDKMI SNIRLVI
Sbjct: 320  QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379

Query: 1225 SIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 1404
            SIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 380  SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439

Query: 1405 TIRLP 1419
            TIRLP
Sbjct: 440  TIRLP 444



 Score = 23.9 bits (50), Expect(2) = 2e-90
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 1413 PTISHGRGNL 1442
            P ISHGRGNL
Sbjct: 444  PVISHGRGNL 453


>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
            gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
            [Theobroma cacao]
          Length = 623

 Score =  337 bits (864), Expect = 2e-89
 Identities = 205/461 (44%), Positives = 249/461 (54%), Gaps = 41/461 (8%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIH-SHTFFL------------------------------- 264
            M+C+LP FK    + S  FR H SH F +                               
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 265  ---KNRQPVCFQPQCSLPMTS-----TMTTIVGLEKLRLPTFESHISSIATERPLTYTGA 420
               K+++ +CF+ QC L  TS     T T ++ +EKLRLP+FE+H +S+A +RP TY GA
Sbjct: 61   VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGA 120

Query: 421  IGLPLKEHLESTLVTE-IIPSGXXXXXXXXXXXXXXXXXXXXXXXXXXLMFGNEPSANTG 597
             G P +  L +TL T+ ++ S                           LM  N   A T 
Sbjct: 121  TGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTE 180

Query: 598  HRTADIPTGSNFNQLKEAMLTDITLTGNVGFDSMDVEDIQDEENPVRFPIEEFDNLDPTD 777
             ++       +F   K A+ T+    G +G DS   E   +E++  +    E D L+PT+
Sbjct: 181  MKSGVSFATDSFTS-KWALFTEAERAGIIG-DSPTDESEMEEDDSEQNSTTESDELEPTN 238

Query: 778  DEXXXXXXXXXXXIAVRSGRQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPALQEIDY 957
            +E           IAVRS RQTE                              ALQ++DY
Sbjct: 239  EELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDY 298

Query: 958  SDPLRYXXXXXXXXXXXXXXXXXXXXAGVQVLMKLENLHQELTERCGSEPTFPQWAAAAG 1137
            SDPLRY                     G+Q L+KLE L +EL ERCG +PTF QWAAAAG
Sbjct: 299  SDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAG 358

Query: 1138 VDQRTLRQNLNHGIKCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGTEKF 1317
            VDQ+TLR  LN+G+ CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG EKF
Sbjct: 359  VDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 418

Query: 1318 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 1440
            DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT
Sbjct: 419  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 459


>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
            grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
            EUGRSUZ_D01094 [Eucalyptus grandis]
          Length = 588

 Score =  335 bits (859), Expect = 6e-89
 Identities = 201/433 (46%), Positives = 250/433 (57%), Gaps = 9/433 (2%)
 Frame = +1

Query: 169  EIKTMA-CMLPHFKSPTHSISTHFRIHSHTFFLKNRQPVCFQPQCSLPMTSTMT------ 327
            E++ M+ C+LP FK    + S  FR H+     KNR+   F+ QC L  TS  T      
Sbjct: 9    EVQRMSSCLLPQFKCQPDTFSIQFRTHAQ----KNRETTYFRAQCLLSATSPSTLSSAAT 64

Query: 328  -TIVGLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTE-IIPSGXXXXXX 501
              ++ +EKLRLP+ E    S  + RP TYTGA+G P + +L +TL TE ++ S       
Sbjct: 65   AVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEAVIAA 124

Query: 502  XXXXXXXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGN 681
                                LM  NE S+N  ++  ++ + ++ +  K A L ++  + N
Sbjct: 125  AASEAVTLAKAALKSAKHAALMIRNESSSNIDNKL-ELSSRTSTSLSKHAELLELEHS-N 182

Query: 682  VGFDSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXX 861
            +  + M+ E    E N +++  ++ ++L+PT +E           IAVRS RQTE     
Sbjct: 183  ILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKEIR 242

Query: 862  XXXXXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAG 1041
                                     ALQE+DYSDPLRY                     G
Sbjct: 243  ERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELSEG 302

Query: 1042 VQVLMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLV 1221
            +Q L+KLE L  ELTERCG EP F QWAAAAGVDQ+TLR+ LN+G  CKDKMIKSNIRLV
Sbjct: 303  IQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIRLV 362

Query: 1222 ISIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 1401
            ISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 363  ISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 422

Query: 1402 RTIRLPFHMVEAT 1440
            RTIRLPFHMVEAT
Sbjct: 423  RTIRLPFHMVEAT 435


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  321 bits (822), Expect = 1e-84
 Identities = 200/428 (46%), Positives = 236/428 (55%), Gaps = 8/428 (1%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIHSHTFF-----LKNRQPVCFQPQCSLPMTS--TMTTIVG 339
            M+C+LP FK    + S HFR +   F       K+R+P+ ++ QC L  TS  T T ++ 
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVLD 61

Query: 340  LEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTE-IIPSGXXXXXXXXXXX 516
            LEKLRLP+FE+   SIA   P TY             STL TE +I S            
Sbjct: 62   LEKLRLPSFEAPSDSIAPNSPWTYAT---------FGSTLATETLITSDEAVIAAAAAEA 112

Query: 517  XXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNVGFDS 696
                           L+  N PSA T  +   + + S  +  +    T+      +G DS
Sbjct: 113  VALARAAVKVAKDAALLVKNFPSAETESK---LTSPSTIDASRWPQFTETERARIIG-DS 168

Query: 697  MDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXXXX 876
            +  E    EE+ ++  I+E D L+ T  E           IAVRS RQTE          
Sbjct: 169  VATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVE 228

Query: 877  XXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQVLM 1056
                                +LQE+DYSDPLRY                    A +Q L+
Sbjct: 229  KAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLL 288

Query: 1057 KLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISIAK 1236
            KLE L +EL ER G +PTF QWAAAAGVDQRTLR+ +NHG  CKDKMIKSNIRLVISIAK
Sbjct: 289  KLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAK 348

Query: 1237 NYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 1416
            NYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 349  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 408

Query: 1417 PFHMVEAT 1440
            PFHMVEAT
Sbjct: 409  PFHMVEAT 416


>ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Eucalyptus
            grandis]
          Length = 601

 Score =  320 bits (821), Expect = 2e-84
 Identities = 191/403 (47%), Positives = 234/403 (58%), Gaps = 8/403 (1%)
 Frame = +1

Query: 256  FFLKNRQPVCFQPQCSLPMTSTMT-------TIVGLEKLRLPTFESHISSIATERPLTYT 414
            F  KNR+   F+ QC L  TS  T        ++ +EKLRLP+ E    S  + RP TYT
Sbjct: 48   FAEKNRETTYFRAQCLLSATSPSTLSSAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYT 107

Query: 415  GAIGLPLKEHLESTLVTE-IIPSGXXXXXXXXXXXXXXXXXXXXXXXXXXLMFGNEPSAN 591
            GA+G P + +L +TL TE ++ S                           LM  NE S+N
Sbjct: 108  GAVGPPAEVNLGATLATETLLTSDEAVIAAAASEAVTLAKAALKSAKHAALMIRNESSSN 167

Query: 592  TGHRTADIPTGSNFNQLKEAMLTDITLTGNVGFDSMDVEDIQDEENPVRFPIEEFDNLDP 771
              ++  ++ + ++ +  K A L ++  + N+  + M+ E    E N +++  ++ ++L+P
Sbjct: 168  IDNKL-ELSSRTSTSLSKHAELLELEHS-NILTELMEPEGGLREGNVMQYSTDKSEDLEP 225

Query: 772  TDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPALQEI 951
            T +E           IAVRS RQTE                              ALQE+
Sbjct: 226  THEELQLLQVQLFKSIAVRSRRQTERKEIRERAAEKAAANVVSVKSGSLSKKKRAALQEV 285

Query: 952  DYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQVLMKLENLHQELTERCGSEPTFPQWAAA 1131
            DYSDPLRY                     G+Q L+KLE L  ELTERCG EP F QWAAA
Sbjct: 286  DYSDPLRYLRGTTSSSRLLTATEETELSEGIQDLLKLERLQVELTERCGGEPAFAQWAAA 345

Query: 1132 AGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGTE 1311
            AGVDQ+TLR+ LN+G  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG E
Sbjct: 346  AGVDQKTLRKRLNYGRLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGCE 405

Query: 1312 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 1440
            KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT
Sbjct: 406  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 448


>ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-like [Phoenix
            dactylifera]
          Length = 566

 Score =  318 bits (816), Expect = 6e-84
 Identities = 191/423 (45%), Positives = 236/423 (55%), Gaps = 3/423 (0%)
 Frame = +1

Query: 181  MACMLPHFKSPTHSISTHFRIHSHTFFL--KNRQPVCFQPQCSLPMTSTMTTIVGLEKLR 354
            MAC++P FK P+ S   HFR  SH   L  K R  VCF+  C     ST+T  V ++  R
Sbjct: 1    MACLVPQFKCPSISPDAHFRPLSHHPSLNSKARDSVCFRSPC----VSTLTAAV-IDIQR 55

Query: 355  LPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXXXXXXXXXXXXX 534
            +P+ E+H +S+   RPLTY GA+G P+K  +E+TL TE + +G                 
Sbjct: 56   IPSLEAHSTSLDATRPLTYVGAVGPPMKTSIEATLATETLLTGEEAVIAAAAAEAVALAR 115

Query: 535  XXXXXXXXXL-MFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGNVGFDSMDVED 711
                       + GN+PS     ++ D  + ++  +L+   LT++ L       +     
Sbjct: 116  AAVEVAKDAAQIIGNDPSVKL-EKSEDFSSEADAFRLERVRLTEMELIRTTNNST----P 170

Query: 712  IQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXXXXXXXXXXXX 891
               E +  + P +  D  + T  E           IAVRSGRQT+               
Sbjct: 171  TDTEPHEAKDPSQGTDVSNLTHKELESQQMQYPESIAVRSGRQTDRKARRTRAAEKAAVS 230

Query: 892  XXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAGVQVLMKLENL 1071
                             QE+DYSDPLRY                      +Q ++KLE L
Sbjct: 231  VIPVKSGSTSKKKRSTFQEVDYSDPLRYLRGTTSTSKLLTAAEELELSEAIQDMLKLERL 290

Query: 1072 HQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLVISIAKNYQGA 1251
             QEL ER G +PTF QWAAAAGVDQRTLR+ LN+G  CKDKMIKSNIRLVISIAKNYQGA
Sbjct: 291  QQELAERHGGQPTFAQWAAAAGVDQRTLRKRLNYGRFCKDKMIKSNIRLVISIAKNYQGA 350

Query: 1252 GMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 1431
            GMNLQDLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQAVR+SLS+QSRTIRLPFHMV
Sbjct: 351  GMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRRSLSEQSRTIRLPFHMV 410

Query: 1432 EAT 1440
            EAT
Sbjct: 411  EAT 413


>gb|KDO49417.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
          Length = 460

 Score =  318 bits (816), Expect = 6e-84
 Identities = 183/373 (49%), Positives = 221/373 (59%)
 Frame = +1

Query: 322  MTTIVGLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXX 501
            MTT++ +EKLRLP+ E+H +++A  R  TY GA+G   +E+L ++L TE + S       
Sbjct: 1    MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 60

Query: 502  XXXXXXXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGN 681
                                LM  +  SA    + A I + ++ N    A LT+      
Sbjct: 61   ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASI 119

Query: 682  VGFDSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXX 861
            +G DS+ VE   +EE   + P+ +  +L+PT +E           IAVRS RQTE     
Sbjct: 120  IG-DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 178

Query: 862  XXXXXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAG 1041
                                    P++QE+DYSDPLRY                    AG
Sbjct: 179  TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238

Query: 1042 VQVLMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLV 1221
            +Q L+KLE L + L+ERCG  PTF QWAAAAGVDQR LR+ LN+GI CKDKMI SNIRLV
Sbjct: 239  IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298

Query: 1222 ISIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 1401
            ISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 299  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358

Query: 1402 RTIRLPFHMVEAT 1440
            RTIRLPFHMVEAT
Sbjct: 359  RTIRLPFHMVEAT 371


>gb|KDO49416.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
          Length = 525

 Score =  318 bits (816), Expect = 6e-84
 Identities = 183/373 (49%), Positives = 221/373 (59%)
 Frame = +1

Query: 322  MTTIVGLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXX 501
            MTT++ +EKLRLP+ E+H +++A  R  TY GA+G   +E+L ++L TE + S       
Sbjct: 1    MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 60

Query: 502  XXXXXXXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGN 681
                                LM  +  SA    + A I + ++ N    A LT+      
Sbjct: 61   ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASI 119

Query: 682  VGFDSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXX 861
            +G DS+ VE   +EE   + P+ +  +L+PT +E           IAVRS RQTE     
Sbjct: 120  IG-DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 178

Query: 862  XXXXXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAG 1041
                                    P++QE+DYSDPLRY                    AG
Sbjct: 179  TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238

Query: 1042 VQVLMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLV 1221
            +Q L+KLE L + L+ERCG  PTF QWAAAAGVDQR LR+ LN+GI CKDKMI SNIRLV
Sbjct: 239  IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298

Query: 1222 ISIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 1401
            ISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 299  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358

Query: 1402 RTIRLPFHMVEAT 1440
            RTIRLPFHMVEAT
Sbjct: 359  RTIRLPFHMVEAT 371


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  318 bits (814), Expect = 1e-83
 Identities = 183/373 (49%), Positives = 220/373 (58%)
 Frame = +1

Query: 322  MTTIVGLEKLRLPTFESHISSIATERPLTYTGAIGLPLKEHLESTLVTEIIPSGXXXXXX 501
            MTT++ +EKLRLP+ E+H +++A  R  TY GA+G   +E+L ++L TE + S       
Sbjct: 1    MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 60

Query: 502  XXXXXXXXXXXXXXXXXXXXLMFGNEPSANTGHRTADIPTGSNFNQLKEAMLTDITLTGN 681
                                LM  +  SA    + A I   ++ N    A LT+      
Sbjct: 61   ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISLSADTNTSMWAQLTERERASI 119

Query: 682  VGFDSMDVEDIQDEENPVRFPIEEFDNLDPTDDEXXXXXXXXXXXIAVRSGRQTEXXXXX 861
            +G DS+ VE   +EE   + P+ +  +L+PT +E           IAVRS RQTE     
Sbjct: 120  IG-DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 178

Query: 862  XXXXXXXXXXXXXXXXXXXXXXXXPALQEIDYSDPLRYXXXXXXXXXXXXXXXXXXXXAG 1041
                                    P++QE+DYSDPLRY                    AG
Sbjct: 179  TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238

Query: 1042 VQVLMKLENLHQELTERCGSEPTFPQWAAAAGVDQRTLRQNLNHGIKCKDKMIKSNIRLV 1221
            +Q L+KLE L + L+ERCG  PTF QWAAAAGVDQR LR+ LN+GI CKDKMI SNIRLV
Sbjct: 239  IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298

Query: 1222 ISIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 1401
            ISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 299  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358

Query: 1402 RTIRLPFHMVEAT 1440
            RTIRLPFHMVEAT
Sbjct: 359  RTIRLPFHMVEAT 371