BLASTX nr result
ID: Aconitum23_contig00029402
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum23_contig00029402
(1331 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 84 3e-23
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 82 4e-22
ref|XP_012441923.1| PREDICTED: uncharacterized protein LOC105766... 89 6e-22
emb|CDP17738.1| unnamed protein product [Coffea canephora] 75 1e-18
gb|ABD63150.1| Putative retroelement pol polyprotein, related [A... 79 2e-18
ref|XP_011000402.1| PREDICTED: uncharacterized protein LOC105107... 100 4e-18
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 65 1e-17
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 61 3e-17
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 60 1e-16
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 66 1e-16
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 66 1e-16
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 67 2e-16
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 66 2e-16
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 64 3e-16
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 65 4e-16
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 65 4e-16
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 65 4e-16
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 60 4e-16
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 68 6e-16
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 66 6e-16
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 84.0 bits (206), Expect(2) = 3e-23
Identities = 45/121 (37%), Positives = 65/121 (53%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M ND+ C+ G GSI+++ H L +VRYVP LK NLIS+G LE KG + + + +
Sbjct: 255 MGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGIL 314
Query: 567 RIFSNALVIARGVHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASERTRQ 746
+ S ALV+ +GV +NLYY +LW+MRL HA E++ Q
Sbjct: 315 KATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEATKLWHMRLGHAGEKSLQ 374
Query: 747 M 749
+
Sbjct: 375 I 375
Score = 53.9 bits (128), Expect(2) = 3e-23
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Frame = +1
Query: 37 QALYTRGRNQEKNSKSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEER* 216
+AL RGR Q S++ R SK++GR + KDE +EK ++ K E+
Sbjct: 140 EALVARGRQQ---SQTKERRGMSKSKGRA--VAKDECAFCHEKGHWKKDCPKLQKKEKVL 194
Query: 217 RKRSNPK*VLLKRSTKT*NTNFSLSF---DWILDSGCSFHICPVREWFSSFEKMSSDMV 384
+ + + S + + S S +WILDSGC++H+CP+R+WF F+++ +V
Sbjct: 195 QDANVAECKSDVESDISLIVSLSASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVV 253
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 81.6 bits (200), Expect(2) = 4e-22
Identities = 44/121 (36%), Positives = 64/121 (52%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M ND+ C+ G GSI+++ H L +VRYVP LK NLIS+G LE KG + + + +
Sbjct: 254 MGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGIL 313
Query: 567 RIFSNALVIARGVHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASERTRQ 746
+ ALV+ +GV +NLYY +LW+MRL HA E++ Q
Sbjct: 314 KATLGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQ 373
Query: 747 M 749
+
Sbjct: 374 I 374
Score = 52.4 bits (124), Expect(2) = 4e-22
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Frame = +1
Query: 37 QALYTRGRNQEKNSKSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEER* 216
+AL RGR Q S++ R SK++GR + KDE +EK ++ K E+
Sbjct: 139 EALVIRGRQQ---SQTKERRGMSKSKGR--VVAKDECAFCHEKGHWKKDCPKLQKKEKVP 193
Query: 217 RKRSNPK*VLLKRSTKT*NTNFSLSF---DWILDSGCSFHICPVREWFSSFEKMSSDMV 384
+ + + S + + S S +WILDSGC++H+CP+R+WF F+++ +V
Sbjct: 194 QDANVAECKSDVESDISLIVSLSASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVV 252
>ref|XP_012441923.1| PREDICTED: uncharacterized protein LOC105766925 [Gossypium
raimondii]
Length = 217
Score = 89.4 bits (220), Expect(2) = 6e-22
Identities = 46/120 (38%), Positives = 66/120 (55%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M ND +C+ G G+I++K H ++ LT+VRY+P LK NLIS+G LE KG I L + +
Sbjct: 38 MGNDSACKTMGVGTIQLKNHDGLIQVLTDVRYIPSLKKNLISLGVLESKGLTITLRDGLL 97
Query: 567 RIFSNALVIARGVHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASERTRQ 746
++ + L + +G +NLYYLN RLW+MRL HA E+ Q
Sbjct: 98 KVVAGILTVMKGTRRNNLYYLN-GSTIIGSTSTASTKDADSEATRLWHMRLGHAGEKALQ 156
Score = 44.3 bits (103), Expect(2) = 6e-22
Identities = 14/30 (46%), Positives = 24/30 (80%)
Frame = +1
Query: 295 DWILDSGCSFHICPVREWFSSFEKMSSDMV 384
+WILD GC++H+CP ++WFSS +++ +V
Sbjct: 7 EWILDLGCTYHMCPNKDWFSSLKELEGGIV 36
>emb|CDP17738.1| unnamed protein product [Coffea canephora]
Length = 798
Score = 75.1 bits (183), Expect(2) = 1e-18
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M ND+ C+ G GSI+++ H L +VRYVP LK +LIS+G LE KG ++ + + +
Sbjct: 339 MGNDNPCKTVGIGSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGIL 398
Query: 567 RIFSNALVIARGVHSSNLYYL-NCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASERTR 743
++ S AL++ +GV +NLYY +LW+MRL A E++
Sbjct: 399 KVTSGALLMLKGVRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSL 458
Query: 744 Q 746
Q
Sbjct: 459 Q 459
Score = 47.4 bits (111), Expect(2) = 1e-18
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Frame = +1
Query: 37 QALYTRGRNQEKNSKSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEER* 216
+AL RGR Q S+S R SK+ R + KDE EK ++ K
Sbjct: 226 EALVARGRQQ---SQSKGRRGWSKSISR---VAKDECAFCREKGHWKKDCPKLKK----- 274
Query: 217 RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVREWFSSFEKMS 372
K P+ V + ++FSL+ +WILDS C++H+ P+REWF FE++
Sbjct: 275 -KGKAPQDVNVAECKSDAESDFSLAVSRLTSHPDEWILDSTCTYHMTPMREWFFEFEELD 333
Query: 373 SDMV 384
V
Sbjct: 334 GGFV 337
>gb|ABD63150.1| Putative retroelement pol polyprotein, related [Asparagus
officinalis]
Length = 168
Score = 79.0 bits (193), Expect(2) = 2e-18
Identities = 36/79 (45%), Positives = 55/79 (69%)
Frame = +3
Query: 384 LMDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSG 563
+M+ND SC I G++R++MH ++ EL +VR+VP LK NLISVG LE KG+K+ E++
Sbjct: 38 IMENDQSCGICTIGTVRIRMHDGVVRELKDVRFVPQLKKNLISVGALEAKGFKVTFEDAE 97
Query: 564 VRIFSNALVIARGVHSSNL 620
++ +LV+ +GV S L
Sbjct: 98 AKVTKGSLVVMKGVCSLEL 116
Score = 43.1 bits (100), Expect(2) = 2e-18
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +1
Query: 298 WILDSGCSFHICPVREWFSSFEKMSSDMV 384
W+LDSG ++H+ P R+WFSSFE++ ++
Sbjct: 9 WMLDSGATYHVTPRRDWFSSFERLDGGVI 37
>ref|XP_011000402.1| PREDICTED: uncharacterized protein LOC105107971 [Populus
euphratica]
Length = 450
Score = 100 bits (248), Expect = 4e-18
Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Frame = +3
Query: 339 EGVVLKL*KNEF*YG--LMDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLIS 512
E ++ L EF G LM NDD C+I+G +I +KMH+ ++ LT++RYVP LK NL S
Sbjct: 123 EHLITTLLLEEFDEGVVLMGNDDVCKIKGVETIYLKMHNGVVKTLTKIRYVPYLKKNLFS 182
Query: 513 VGTLEMKGYKIVLENSGVRIFSNALVIARGVHSSNLYYLNCXXXXXXXXXXXXXXXXXXX 692
+G LE GYKI++ +R ALV+ RG NLY+L+
Sbjct: 183 LGVLESSGYKIIMHGGVLRAIHGALVVLRGTRKGNLYFLDGSIVISTVTVSKSLKDAEAD 242
Query: 693 XMRLWNMRLDHASERTRQ 746
RLW+MRL HA E Q
Sbjct: 243 NSRLWHMRLKHAGEEALQ 260
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 64.7 bits (156), Expect(2) = 1e-17
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Frame = +3
Query: 384 LMDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSG 563
LM ++ C++ G G+I++KM + L++VR++P LK NLIS+ TL+ KGY+ +
Sbjct: 271 LMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGI 330
Query: 564 VRIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASE 734
+++ +LV+ + + +++LY+L LW+MRL H SE
Sbjct: 331 LKVTKGSLVVMKADIKNADLYHLQ----GTTIVGNVAAVTDSLSNSDLWHMRLGHMSE 384
Score = 54.3 bits (129), Expect(2) = 1e-17
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 21/137 (15%)
Frame = +1
Query: 37 QALYTRGRNQEKN--------SKSNYNRFRSKTRGRRKELN---------KDEYPV*NEK 165
++L RGR QEKN S S Y R RSK+RGR K D + + N++
Sbjct: 140 ESLVVRGRQQEKNTDNKSRDKSSSGY-RGRSKSRGRYKSCKYCKRGGHDISDCWKLQNKE 198
Query: 166 RLGRESAQNQGKTEER*RKR----SNPK*VLLKRSTKT*NTNFSLSFDWILDSGCSFHIC 333
+ + + + +GK EE+ + + P LL T S +W+LD+GC++H+C
Sbjct: 199 K-HKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQT----SDEWLLDTGCTYHMC 253
Query: 334 PVREWFSSFEKMSSDMV 384
P R+WF+++E + V
Sbjct: 254 PNRDWFTTYEPVQGGNV 270
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 61.2 bits (147), Expect(2) = 3e-17
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M +D+ I G GS+++K H + L +VR++P + NLIS+ TL+ +GYK V
Sbjct: 323 MGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVV 382
Query: 567 RIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASE 734
++ +LV G ++S+NLY L LW+MRL H SE
Sbjct: 383 KVSKGSLVYMIGDMNSANLYVLR-GSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSE 438
Score = 56.2 bits (134), Expect(2) = 3e-17
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Frame = +1
Query: 34 GQALYTRGRNQEKNSKSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEER 213
G+AL RGR++++ + +R +S++RGR K K +K E K + +
Sbjct: 199 GEALQVRGRSEQRTYNDSSDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECW---KLQNK 255
Query: 214 *RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVREWFSSFEKM 369
+++S+ K ++ + + + + + F +WILD+ CSFHIC R+WFSS++ +
Sbjct: 256 EKRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSV 315
Query: 370 SS 375
+
Sbjct: 316 QN 317
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 60.5 bits (145), Expect(2) = 1e-16
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M +D+ I G GS+++K H + L +VR++P + NLIS+ TL+ +GYK V
Sbjct: 323 MGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVV 382
Query: 567 RIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASE 734
++ +LV G ++S+NLY L LW+MRL H SE
Sbjct: 383 KVSKGSLVYMIGDMNSANLYVLR-GSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSE 438
Score = 55.5 bits (132), Expect(2) = 1e-16
Identities = 34/125 (27%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Frame = +1
Query: 34 GQALYTRGRNQEKNSKSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEER 213
G+AL RGR++++ + + +S++RGR K K +K E K + +
Sbjct: 199 GEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNHFIEECW---KLQNK 255
Query: 214 *RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVREWFSSFEKM 369
+++S+ K ++ + + + + + F +WILD+ CSFHIC R+WFSS++ +
Sbjct: 256 EKRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSV 315
Query: 370 SSDMV 384
++ V
Sbjct: 316 QNEDV 320
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 66.2 bits (160), Expect(2) = 1e-16
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +3
Query: 384 LMDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSG 563
LM +D C + G G++++KM + L++VR++P LK +LIS+ TL+ KGYK +
Sbjct: 364 LMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGI 423
Query: 564 VRIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASE 734
+++ +LV+ + + S+NLY+L LW+MRL H SE
Sbjct: 424 LKVTKGSLVVMKADIKSANLYHLR-GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSE 480
Score = 49.7 bits (117), Expect(2) = 1e-16
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Frame = +1
Query: 37 QALYTRGRNQEKNSK-------SNYNRFRSKTRGRRKELN---KDEYPV*NEKRLGRESA 186
+ L RGR QEKN+K S+ R RSK+RGR K +D + + +L ++
Sbjct: 233 EGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKL-QDKD 291
Query: 187 QNQGKTEER*RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVR 342
+ GK + +K K ++ +T +++ WILD+ ++H+CP R
Sbjct: 292 KRTGKYIPKGKKEEEGKAAVVTDEKS--DTELLVAYAGCAQTSDQWILDTAWTYHMCPNR 349
Query: 343 EWFSSFEKMSSDMV 384
+WF+++E + V
Sbjct: 350 DWFATYEALQGGTV 363
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 66.2 bits (160), Expect(2) = 1e-16
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +3
Query: 384 LMDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSG 563
LM +D C + G G++++KM + L++VR++P LK +LIS+ TL+ KGYK +
Sbjct: 364 LMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGI 423
Query: 564 VRIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASE 734
+++ +LV+ + + S+NLY+L LW+MRL H SE
Sbjct: 424 LKVTKGSLVVMKADIKSANLYHLR-GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSE 480
Score = 49.7 bits (117), Expect(2) = 1e-16
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Frame = +1
Query: 37 QALYTRGRNQEKNSK-------SNYNRFRSKTRGRRKELN---KDEYPV*NEKRLGRESA 186
+ L RGR QEKN+K S+ R RSK+RGR K +D + + +L ++
Sbjct: 233 EGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKL-QDKD 291
Query: 187 QNQGKTEER*RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVR 342
+ GK + +K K ++ +T +++ WILD+ ++H+CP R
Sbjct: 292 KRTGKYIPKGKKEEEGKAAVVTDEKS--DTELLVAYAGCAQTSDQWILDTAWTYHMCPNR 349
Query: 343 EWFSSFEKMSSDMV 384
+WF+++E + V
Sbjct: 350 DWFATYEALQGGTV 363
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 66.6 bits (161), Expect(2) = 2e-16
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M +D+ C I G GS+++K + L VRY+P + NLIS+ TL+ +GYK + +
Sbjct: 321 MGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVL 380
Query: 567 RIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASERTR 743
++ +LV +G V+S+ LY L LW+MRL H S
Sbjct: 381 KVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGM 440
Query: 744 QMQXXXXXXXXXTSATISMQSH--LSKHAKSPFPT 842
TS+ I H KH + F T
Sbjct: 441 TELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNT 475
Score = 48.5 bits (114), Expect(2) = 2e-16
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Frame = +1
Query: 34 GQALYTRGRNQEKNS-KSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEE 210
G+AL+ RGR + + S + NY+R + R + K ++ V + + + + +E
Sbjct: 196 GEALHVRGRTENRTSNEKNYDR---RGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKE 252
Query: 211 R*RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVREWFSSFE 363
R K+ V ++ + + + F +WILDS CSFHIC R WFSS++
Sbjct: 253 RKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYK 311
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 66.2 bits (160), Expect(2) = 2e-16
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +3
Query: 384 LMDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSG 563
LM +D C + G G++++KM + L++VR++P LK +LIS+ TL+ KGYK +
Sbjct: 329 LMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGI 388
Query: 564 VRIFSNALVIAR-GVHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASE 734
+++ +LV+ + + S+NLY+L LW+MRL H SE
Sbjct: 389 LKVTKGSLVVMKASIKSANLYHLQ-GTTILGNVATVSDSLSNSDATNLWHMRLGHMSE 445
Score = 48.5 bits (114), Expect(2) = 2e-16
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Frame = +1
Query: 37 QALYTRGRNQEKN--------SKSNYNRFRSKTRGRRKELN---KDEYPV*NEKRLGRES 183
+ L RG QEKN S S+Y R RSK+RGR K +D + + +L ++
Sbjct: 198 EGLVVRGSQQEKNTNNKSRDKSSSSY-RGRSKSRGRYKSCKYCKRDGHDISKCWKL-QDK 255
Query: 184 AQNQGKTEER*RKRSNPK*VLL--KRSTKT*NTNFS----LSFDWILDSGCSFHICPVRE 345
+ GK + +K K ++ ++S ++ S WILD+ C++H+CP R+
Sbjct: 256 DKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRD 315
Query: 346 WFSSFEKMSSDMV 384
WF+++E + V
Sbjct: 316 WFATYEVVQGGTV 328
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 63.5 bits (153), Expect(2) = 3e-16
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M ND+ I G GS+++K H I L +VR++P + NLIS+ TL+ +GYK V
Sbjct: 323 MGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVV 382
Query: 567 RIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASE 734
++ +LV G ++S+NLY L LW+MRL H SE
Sbjct: 383 KVSKGSLVYMIGDMNSANLYVLR-GSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSE 438
Score = 50.8 bits (120), Expect(2) = 3e-16
Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Frame = +1
Query: 34 GQALYTRGRNQEKNSKSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEER 213
G+AL +GR++++ + +R +SK+RGR K K +K + K + +
Sbjct: 199 GEALQVKGRSEQRTYNDSNDRDKSKSRGRSKSRGKKFCKYCKKKI---HFIKECWKLQNK 255
Query: 214 *RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVREWFSSFEKM 369
+++S+ K ++ + + + + + F +WILD+ CSFHI R+WFSS++ +
Sbjct: 256 EKRKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSV 315
Query: 370 SS 375
+
Sbjct: 316 QN 317
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 65.5 bits (158), Expect(2) = 4e-16
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M +D+ C I G GS+++K + L VRY+P + NLIS+ TL+ +GYK + +
Sbjct: 323 MGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVL 382
Query: 567 RIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASERTR 743
++ +LV +G ++S+ LY L LW+MRL H S
Sbjct: 383 KVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGM 442
Query: 744 QMQXXXXXXXXXTSATISMQSH--LSKHAKSPFPT 842
TS+ I H KH + F T
Sbjct: 443 TELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNT 477
Score = 48.5 bits (114), Expect(2) = 4e-16
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Frame = +1
Query: 34 GQALYTRGRNQEKNS-KSNYNRFRSKTRGRRKELNKDEYPV*NEK-----RLGRESAQNQ 195
G+AL+ RGR + K S + NY+R RGR K P N+K +L +
Sbjct: 198 GEALHVRGRTENKTSNEKNYDR-----RGRSKSK-----PPGNKKFCVYCKLKNHNIDEC 247
Query: 196 GKTEER*RKRSNPK*VLLKRSTKT*NTNFSLSF----------DWILDSGCSFHICPVRE 345
K + + RK V + + + + + +WILDS CSFHIC R
Sbjct: 248 KKVQAKERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRN 307
Query: 346 WFSSFE 363
WFSS++
Sbjct: 308 WFSSYK 313
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 65.5 bits (158), Expect(2) = 4e-16
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M +D+ C I G GS+++K + L VRY+P + NLIS+ TL+ +GYK + +
Sbjct: 321 MGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVL 380
Query: 567 RIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASERTR 743
++ +LV +G ++S+ LY L LW+MRL H S
Sbjct: 381 KVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGM 440
Query: 744 QMQXXXXXXXXXTSATISMQSH--LSKHAKSPFPT 842
TS+ I H KH + F T
Sbjct: 441 TELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNT 475
Score = 48.5 bits (114), Expect(2) = 4e-16
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Frame = +1
Query: 34 GQALYTRGRNQEKNS-KSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEE 210
G+AL+ RGR + + S + NY+R + R + K ++ V + + + + +E
Sbjct: 196 GEALHVRGRTENRTSNEKNYDR---RGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKE 252
Query: 211 R*RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVREWFSSFE 363
R K+ V ++ + + + F +WILDS CSFHIC R WFSS++
Sbjct: 253 RKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYK 311
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 65.5 bits (158), Expect(2) = 4e-16
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M +D+ C I G GS+++K + L VRY+P + NLIS+ TL+ +GYK + +
Sbjct: 321 MGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVL 380
Query: 567 RIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASERTR 743
++ +LV +G ++S+ LY L LW+MRL H S
Sbjct: 381 KVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGM 440
Query: 744 QMQXXXXXXXXXTSATISMQSH--LSKHAKSPFPT 842
TS+ I H KH + F T
Sbjct: 441 TELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNT 475
Score = 48.5 bits (114), Expect(2) = 4e-16
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Frame = +1
Query: 34 GQALYTRGRNQEKNS-KSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEE 210
G+AL+ RGR + + S + NY+R + R + K ++ V + + + + +E
Sbjct: 196 GEALHVRGRTENRTSNEKNYDR---RGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKE 252
Query: 211 R*RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVREWFSSFE 363
R K+ V ++ + + + F +WILDS CSFHIC R WFSS++
Sbjct: 253 RKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYK 311
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 59.7 bits (143), Expect(2) = 4e-16
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M +D+ I G GS+++K H + L +VR++P + NLIS+ TL+ +GYK V
Sbjct: 218 MGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVV 277
Query: 567 RIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASE 734
++ +LV G ++S+NLY L +W+MRL H SE
Sbjct: 278 KVSKGSLVYMIGDMNSANLYVLR-GSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSE 333
Score = 54.3 bits (129), Expect(2) = 4e-16
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Frame = +1
Query: 34 GQALYTRGRNQEKNSKSNYNRFRSKTRGRRKELNKDEYPV*NEKRLGRESAQNQGKTEER 213
G+AL RGR++++ + +R ++++RGR K K +K E K + +
Sbjct: 94 GEALQVRGRSEQRTYNDSNDRDKNQSRGRSKSRGKKFCKYCKKKNHFIEECW---KLQNK 150
Query: 214 *RKRSNPK*VLLKRSTKT*NTNFSLSF--------DWILDSGCSFHICPVREWFSSFEKM 369
+++S+ K ++ + + + + + F +WILD+ CSFHIC R+WFSS++ +
Sbjct: 151 EKRKSDGKASVVTSADNSDSGDCLVVFVVCVSSHDEWILDTTCSFHICINRDWFSSYKSV 210
Query: 370 SS 375
+
Sbjct: 211 QN 212
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 67.8 bits (164), Expect(2) = 6e-16
Identities = 37/121 (30%), Positives = 60/121 (49%)
Frame = +3
Query: 387 MDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSGV 566
M N C++ GTGSI+++ H L EVR+VP + NLIS+ L+ KG+ ++ +
Sbjct: 309 MANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVL 368
Query: 567 RIFSNALVIARGVHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASERTRQ 746
R++ + +I +GV LY+L +LW++RL H ER Q
Sbjct: 369 RVWKGSNLILKGVMRGTLYFLQ-GSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQ 427
Query: 747 M 749
+
Sbjct: 428 I 428
Score = 45.4 bits (106), Expect(2) = 6e-16
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +1
Query: 298 WILDSGCSFHICPVREWFSSFEKMSSDMV 384
W+LDSG S+HICP REWF+++E++ +
Sbjct: 279 WVLDSGASYHICPRREWFTTYEQVDGGSI 307
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 66.2 bits (160), Expect(2) = 6e-16
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +3
Query: 384 LMDNDDSCRIEGTGSIRVKMHHNIMIELTEVRYVPCLKNNLISVGTLEMKGYKIVLENSG 563
LM +D C + G G++++KM + L++VR++P LK +LIS+ TL+ KGYK +
Sbjct: 314 LMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGI 373
Query: 564 VRIFSNALVIARG-VHSSNLYYLNCXXXXXXXXXXXXXXXXXXXXMRLWNMRLDHASE 734
+++ +LV+ + + S+NLY+L LW+MRL H SE
Sbjct: 374 LKVTKGSLVVMKADIKSANLYHLQ-GTTILGNVATVSDSLSNSDATNLWHMRLGHMSE 430
Score = 47.0 bits (110), Expect(2) = 6e-16
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Frame = +1
Query: 37 QALYTRGRNQEKN--------SKSNYNRFRSKTRGRRKELN---KDEYPV*NEKRLGRES 183
+ L +G QEKN S S+Y R RSK+RGR K +D + + +L ++
Sbjct: 183 EGLVVQGSQQEKNTNNKSRDKSSSSY-RGRSKSRGRYKSCKYCKRDGHDISKCWKL-QDK 240
Query: 184 AQNQGKTEER*RKRSNPK*VLL--KRSTKT*NTNFS----LSFDWILDSGCSFHICPVRE 345
+ GK + +K K ++ ++S ++ S WILD+ C++H+CP R+
Sbjct: 241 DKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRD 300
Query: 346 WFSSFEKMSSDMV 384
WF+++E + V
Sbjct: 301 WFATYEVVQGGTV 313