BLASTX nr result
ID: Aconitum23_contig00029096
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum23_contig00029096
(524 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_862746.2| RNA polymerase beta subunit [Calycanthus florid... 162 1e-46
sp|Q7YJX8.1|RPOB_CALFG RecName: Full=DNA-directed RNA polymerase... 162 1e-46
ref|YP_002836082.1| RNA polymerase beta subunit [Megaleranthis s... 162 4e-46
ref|YP_007475611.1| RNA polymerase beta subunit [Heliconia colli... 160 6e-45
ref|YP_009161546.1| RNA polymerase beta subunit (chloroplast) [P... 159 1e-44
ref|YP_005097866.1| RNA polymerase beta subunit (chloroplast) [C... 159 1e-44
gb|AKU70966.1| RNA polymerase beta subunit (chloroplast) [Cinnam... 158 1e-44
ref|YP_004769939.1| RNA polymerase beta subunit (chloroplast) [W... 159 1e-44
gb|AFB18353.1| RNA polymerase beta subunit, partial (plastid) [S... 158 2e-44
ref|YP_003433967.1| RNA polymerase beta subunit [Typha latifolia... 158 2e-44
ref|YP_001595500.1| RNA polymerase beta subunit [Lemna minor] gi... 158 2e-44
gb|AFB18346.1| RNA polymerase beta subunit, partial (plastid) [N... 158 2e-44
gb|AFB18334.1| RNA polymerase beta subunit, partial (plastid) [F... 158 2e-44
gb|AFB18325.1| RNA polymerase beta subunit, partial (plastid) [B... 158 3e-44
ref|YP_009144971.1| RNA polymerase beta subunit (chloroplast) [D... 159 3e-44
gb|AEK94334.2| RNA polymerase beta subunit (chloroplast) [Spirod... 158 4e-44
ref|YP_004769622.1| RNA polymerase beta subunit (chloroplast) [S... 158 4e-44
ref|YP_004842231.1| RNA polymerase beta subunit [Pyrus pyrifolia... 155 4e-44
ref|YP_740642.1| RNA polymerase beta subunit [Nandina domestica]... 154 5e-44
gb|AGE93190.1| RNA polymerase beta subunit [Calectasia narragara] 160 6e-44
>ref|NP_862746.2| RNA polymerase beta subunit [Calycanthus floridus var. glaucus]
Length = 1069
Score = 162 bits (410), Expect(2) = 1e-46
Identities = 83/106 (78%), Positives = 90/106 (84%)
Frame = -1
Query: 428 NQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIF 249
++KS +VYL SRDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQIHLRSIF
Sbjct: 459 SEKSKEIVYLPPSRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSIF 518
Query: 248 PFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
PF YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 519 PFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 564
Score = 51.2 bits (121), Expect(2) = 1e-46
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKEL 415
+ +LAIHARIG+WGS+E PFYE SEKSKE+
Sbjct: 435 LIGSLAIHARIGHWGSIESPFYEISEKSKEI 465
>sp|Q7YJX8.1|RPOB_CALFG RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|32399371|emb|CAD28713.1| RNA polymerase beta subunit
[Calycanthus floridus var. glaucus]
Length = 1060
Score = 162 bits (410), Expect(2) = 1e-46
Identities = 83/106 (78%), Positives = 90/106 (84%)
Frame = -1
Query: 428 NQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIF 249
++KS +VYL SRDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQIHLRSIF
Sbjct: 450 SEKSKEIVYLPPSRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSIF 509
Query: 248 PFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
PF YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 510 PFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 555
Score = 51.2 bits (121), Expect(2) = 1e-46
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKEL 415
+ +LAIHARIG+WGS+E PFYE SEKSKE+
Sbjct: 426 LIGSLAIHARIGHWGSIESPFYEISEKSKEI 456
>ref|YP_002836082.1| RNA polymerase beta subunit [Megaleranthis saniculifolia]
gi|226933874|gb|ACO92007.1| RNA polymerase beta subunit
(chloroplast) [Megaleranthis saniculifolia]
Length = 1071
Score = 162 bits (411), Expect(2) = 4e-46
Identities = 84/107 (78%), Positives = 89/107 (83%)
Frame = -1
Query: 431 RNQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSI 252
++ K VVYL SRDEYYMVAA NSLALNQGIQEEQVVPARYRQ F TIAWEQIHLRSI
Sbjct: 460 KSTKELRVVYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQEFLTIAWEQIHLRSI 519
Query: 251 FPFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
FPF YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 520 FPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 566
Score = 48.9 bits (115), Expect(2) = 4e-46
Identities = 23/32 (71%), Positives = 28/32 (87%), Gaps = 1/32 (3%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKS-KEL 415
+ +LAIHARIG+WGS+ERPFYE S+KS KEL
Sbjct: 434 LIGSLAIHARIGHWGSLERPFYEISDKSTKEL 465
>ref|YP_007475611.1| RNA polymerase beta subunit [Heliconia collinsiana]
gi|449326090|gb|AGE92676.1| RNA polymerase beta subunit
[Heliconia collinsiana]
Length = 1083
Score = 160 bits (404), Expect(2) = 6e-45
Identities = 81/107 (75%), Positives = 90/107 (84%)
Frame = -1
Query: 431 RNQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSI 252
R+++ +VYL +RDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQIHLRSI
Sbjct: 461 RSKEEAQIVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSI 520
Query: 251 FPFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
FPF YFSIGASLIPFIEHND + L+ SNMQ Q VPLSQ +CIVGT
Sbjct: 521 FPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSERCIVGT 567
Score = 47.8 bits (112), Expect(2) = 6e-45
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SE+SKE
Sbjct: 435 LIGSLAIHVRIGHWGSIESPFYEISERSKE 464
>ref|YP_009161546.1| RNA polymerase beta subunit (chloroplast) [Pinellia ternata]
gi|827505696|gb|AKJ83683.1| RNA polymerase beta subunit
(chloroplast) [Pinellia ternata]
Length = 1072
Score = 159 bits (402), Expect(2) = 1e-44
Identities = 81/105 (77%), Positives = 88/105 (83%)
Frame = -1
Query: 425 QKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIFP 246
+K +VYL SRDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQ+HLRSIFP
Sbjct: 463 EKEAQMVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQVHLRSIFP 522
Query: 245 FYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
F YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 523 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 567
Score = 47.8 bits (112), Expect(2) = 1e-44
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SE+SKE
Sbjct: 434 LIGSLAIHVRIGHWGSIESPFYEISERSKE 463
>ref|YP_005097866.1| RNA polymerase beta subunit (chloroplast) [Colocasia esculenta]
gi|340536631|gb|AEK48398.1| RNA polymerase beta subunit
(chloroplast) [Colocasia esculenta]
gi|340536718|gb|AEK48484.1| RNA polymerase beta subunit
(chloroplast) [Colocasia esculenta]
Length = 1072
Score = 159 bits (402), Expect(2) = 1e-44
Identities = 81/105 (77%), Positives = 88/105 (83%)
Frame = -1
Query: 425 QKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIFP 246
+K +VYL SRDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQ+HLRSIFP
Sbjct: 463 EKEAQMVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQVHLRSIFP 522
Query: 245 FYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
F YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 523 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 567
Score = 47.8 bits (112), Expect(2) = 1e-44
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SE+SKE
Sbjct: 434 LIGSLAIHVRIGHWGSIESPFYEISERSKE 463
>gb|AKU70966.1| RNA polymerase beta subunit (chloroplast) [Cinnamomum micranthum f.
kanehirae]
Length = 1077
Score = 158 bits (399), Expect(2) = 1e-44
Identities = 83/114 (72%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Frame = -1
Query: 428 NQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIF 249
+++S +VYL SRDEYYMVAA NSLALN+GIQEEQVVPA YRQ F TIAWEQIHLRSIF
Sbjct: 467 SERSKKMVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPAGYRQEFLTIAWEQIHLRSIF 526
Query: 248 PFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGTD-DCLSVL 90
PF YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT +C + L
Sbjct: 527 PFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLECQAAL 580
Score = 48.5 bits (114), Expect(2) = 1e-44
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKEL 415
+ +LAIHARIG+WGS+E PFYE SE+SK++
Sbjct: 443 LIGSLAIHARIGHWGSIESPFYEISERSKKM 473
>ref|YP_004769939.1| RNA polymerase beta subunit (chloroplast) [Wolffia australiana]
gi|341834231|gb|AEK94500.1| RNA polymerase beta subunit
[Wolffia australiana]
Length = 1072
Score = 159 bits (401), Expect(2) = 1e-44
Identities = 80/105 (76%), Positives = 88/105 (83%)
Frame = -1
Query: 425 QKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIFP 246
+K +VYL SRDEYYM+AA NSLALN+GIQEEQVVPARYRQ F TIAWEQ+HLRSIFP
Sbjct: 463 EKEARMVYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQVHLRSIFP 522
Query: 245 FYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
F YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 523 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 567
Score = 47.8 bits (112), Expect(2) = 1e-44
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SE+SKE
Sbjct: 434 LIGSLAIHVRIGHWGSIETPFYEISERSKE 463
>gb|AFB18353.1| RNA polymerase beta subunit, partial (plastid) [Sparganium
eurycarpum]
Length = 1083
Score = 158 bits (400), Expect(2) = 2e-44
Identities = 81/105 (77%), Positives = 88/105 (83%)
Frame = -1
Query: 425 QKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIFP 246
+K +VYL +RDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQIHLRSIFP
Sbjct: 474 EKESQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSIFP 533
Query: 245 FYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
F YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 534 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 578
Score = 47.8 bits (112), Expect(2) = 2e-44
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SE+SKE
Sbjct: 445 LIGSLAIHVRIGHWGSIESPFYEISERSKE 474
>ref|YP_003433967.1| RNA polymerase beta subunit [Typha latifolia]
gi|69216922|gb|AAZ03995.1| RNA polymerase beta chain
[Typha latifolia] gi|281371764|gb|ADA63691.1| RNA
polymerase beta subunit [Typha latifolia]
Length = 1072
Score = 158 bits (400), Expect(2) = 2e-44
Identities = 81/105 (77%), Positives = 88/105 (83%)
Frame = -1
Query: 425 QKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIFP 246
+K +VYL +RDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQIHLRSIFP
Sbjct: 463 EKESQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSIFP 522
Query: 245 FYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
F YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 523 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 567
Score = 47.8 bits (112), Expect(2) = 2e-44
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SE+SKE
Sbjct: 434 LIGSLAIHVRIGHWGSIESPFYEISERSKE 463
>ref|YP_001595500.1| RNA polymerase beta subunit [Lemna minor]
gi|182676567|sp|A9L988.1|RPOB_LEMMI RecName:
Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
(chloroplast) [Lemna minor] gi|88696762|gb|ABD48487.1|
RNA polymerase beta subunit (chloroplast) [Lemna minor]
Length = 1072
Score = 158 bits (400), Expect(2) = 2e-44
Identities = 79/105 (75%), Positives = 88/105 (83%)
Frame = -1
Query: 425 QKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIFP 246
+K ++YL SRDEYYM+AA NSLALN+GIQEEQVVPARYRQ F TIAWEQ+HLRSIFP
Sbjct: 463 EKEARMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQVHLRSIFP 522
Query: 245 FYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
F YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 523 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 567
Score = 47.8 bits (112), Expect(2) = 2e-44
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SE+SKE
Sbjct: 434 LIGSLAIHVRIGHWGSIETPFYEISERSKE 463
>gb|AFB18346.1| RNA polymerase beta subunit, partial (plastid) [Neoregelia
carolinae]
Length = 1085
Score = 158 bits (400), Expect(2) = 2e-44
Identities = 81/107 (75%), Positives = 89/107 (83%)
Frame = -1
Query: 431 RNQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSI 252
+ +K +VYL +RDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQIHLRSI
Sbjct: 474 QKEKEPQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSI 533
Query: 251 FPFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
FPF YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 534 FPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 580
Score = 47.4 bits (111), Expect(2) = 2e-44
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SEK KE
Sbjct: 447 LIGSLAIHVRIGHWGSIESPFYEISEKQKE 476
>gb|AFB18334.1| RNA polymerase beta subunit, partial (plastid) [Fosterella
caulescens]
Length = 1082
Score = 158 bits (400), Expect(2) = 2e-44
Identities = 81/107 (75%), Positives = 89/107 (83%)
Frame = -1
Query: 431 RNQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSI 252
+ +K +VYL +RDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQIHLRSI
Sbjct: 471 QKEKEPQMVYLSPTRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSI 530
Query: 251 FPFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
FPF YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 531 FPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 577
Score = 47.4 bits (111), Expect(2) = 2e-44
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SEK KE
Sbjct: 444 LIGSLAIHVRIGHWGSIESPFYEISEKQKE 473
>gb|AFB18325.1| RNA polymerase beta subunit, partial (plastid) [Brocchinia
micrantha]
Length = 1085
Score = 158 bits (399), Expect(2) = 3e-44
Identities = 81/107 (75%), Positives = 89/107 (83%)
Frame = -1
Query: 431 RNQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSI 252
+ +K +VYL +RDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQIHLRSI
Sbjct: 474 QKEKEPQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSI 533
Query: 251 FPFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
FPF YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 534 FPFQYFSIGASLIPFIEHNDANRALMSSNMQRQGVPLSRSEKCIVGT 580
Score = 47.4 bits (111), Expect(2) = 3e-44
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SEK KE
Sbjct: 447 LIGSLAIHVRIGHWGSIESPFYEISEKQKE 476
>ref|YP_009144971.1| RNA polymerase beta subunit (chloroplast) [Dieffenbachia seguine]
gi|827504840|gb|AKJ83426.1| RNA polymerase beta subunit
(chloroplast) [Dieffenbachia seguine]
Length = 1072
Score = 159 bits (403), Expect(2) = 3e-44
Identities = 82/105 (78%), Positives = 88/105 (83%)
Frame = -1
Query: 425 QKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIFP 246
+K +VYL SRDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQIHLRSIFP
Sbjct: 463 EKEAQMVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSIFP 522
Query: 245 FYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
F YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 523 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 567
Score = 45.8 bits (107), Expect(2) = 3e-44
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFY SE+SKE
Sbjct: 434 LIGSLAIHVRIGHWGSIESPFYRISERSKE 463
>gb|AEK94334.2| RNA polymerase beta subunit (chloroplast) [Spirodela polyrhiza]
Length = 1072
Score = 158 bits (400), Expect(2) = 4e-44
Identities = 80/100 (80%), Positives = 86/100 (86%)
Frame = -1
Query: 410 VVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIFPFYYFS 231
+VYL SRDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQ+HLRSIFPF YFS
Sbjct: 468 MVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFS 527
Query: 230 IGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
IGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 528 IGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 567
Score = 46.6 bits (109), Expect(2) = 4e-44
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SE+SK+
Sbjct: 434 LIGSLAIHVRIGHWGSIESPFYEISERSKD 463
>ref|YP_004769622.1| RNA polymerase beta subunit (chloroplast) [Spirodela polyrhiza]
Length = 1072
Score = 158 bits (400), Expect(2) = 4e-44
Identities = 80/100 (80%), Positives = 86/100 (86%)
Frame = -1
Query: 410 VVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIFPFYYFS 231
+VYL SRDEYYMVAA NSLALN+GIQEEQVVPARYRQ F TIAWEQ+HLRSIFPF YFS
Sbjct: 468 MVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFS 527
Query: 230 IGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
IGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 528 IGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 567
Score = 46.6 bits (109), Expect(2) = 4e-44
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKE 418
+ +LAIH RIG+WGS+E PFYE SE+SK+
Sbjct: 434 LIGSLAIHVRIGHWGSIESPFYEISERSKD 463
>ref|YP_004842231.1| RNA polymerase beta subunit [Pyrus pyrifolia]
gi|568246723|ref|YP_008965485.1| RNA polymerase beta
subunit [Pyrus spinosa] gi|345433553|dbj|BAK69375.1| RNA
polymerase beta subunit [Pyrus pyrifolia]
gi|565666457|emb|CDI73557.1| RNA polymerase beta subunit
[Pyrus spinosa]
Length = 1068
Score = 155 bits (393), Expect(2) = 4e-44
Identities = 78/106 (73%), Positives = 89/106 (83%)
Frame = -1
Query: 428 NQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQIHLRSIF 249
+++S ++YL S+DEYYMVAA NSLALN+GIQEEQVVPARYRQ F TI WEQ+HLRSIF
Sbjct: 458 SERSKRMLYLSPSKDEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIEWEQVHLRSIF 517
Query: 248 PFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
PF YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 518 PFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 563
Score = 49.3 bits (116), Expect(2) = 4e-44
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSKEL 415
+ +LAIHA+IGYWGS+E PFYE SE+SK +
Sbjct: 434 LIGSLAIHAKIGYWGSLESPFYEISERSKRM 464
>ref|YP_740642.1| RNA polymerase beta subunit [Nandina domestica]
gi|122165969|sp|Q09FW9.1|RPOB_NANDO RecName:
Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|114054462|gb|ABI49855.1| RNA polymerase beta subunit
(chloroplast) [Nandina domestica]
Length = 1070
Score = 154 bits (390), Expect(2) = 5e-44
Identities = 80/112 (71%), Positives = 86/112 (76%)
Frame = -1
Query: 446 FMKILRNQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQI 267
F +I K V+YL S DEYYMV A NSLALN GIQEEQVVPARYRQ F TIAWEQI
Sbjct: 454 FYEISERSKGVRVIYLSPSIDEYYMVTAGNSLALNHGIQEEQVVPARYRQEFLTIAWEQI 513
Query: 266 HLRSIFPFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
LRSIFPF YFS+GASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 514 QLRSIFPFQYFSVGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 565
Score = 50.1 bits (118), Expect(2) = 5e-44
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSK 421
+ +LAIHARIG+WGS+ERPFYE SE+SK
Sbjct: 434 LIGSLAIHARIGHWGSLERPFYEISERSK 462
>gb|AGE93190.1| RNA polymerase beta subunit [Calectasia narragara]
Length = 1074
Score = 160 bits (404), Expect(2) = 6e-44
Identities = 83/112 (74%), Positives = 89/112 (79%)
Frame = -1
Query: 446 FMKILRNQKSYIVVYL*SSRDEYYMVAASNSLALNQGIQEEQVVPARYRQ*FPTIAWEQI 267
F +I K +VYL +RDEYY VAA NSLALNQGIQEEQVVPARYRQ F TIAWEQI
Sbjct: 454 FYEISERSKGAQMVYLSPNRDEYYRVAAGNSLALNQGIQEEQVVPARYRQEFLTIAWEQI 513
Query: 266 HLRSIFPFYYFSIGASLIPFIEHNDVKQDLLCSNMQCQKVPLSQFGKCIVGT 111
HLRSIFPF YFSIGASLIPFIEHND + L+ SNMQ Q VPLS+ KCIVGT
Sbjct: 514 HLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGT 565
Score = 44.3 bits (103), Expect(2) = 6e-44
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -3
Query: 507 MFDALAIHARIGYWGSMERPFYENSEKSK 421
+ +L IH RIG+WGS+E PFYE SE+SK
Sbjct: 434 LIGSLGIHVRIGHWGSIESPFYEISERSK 462