BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00028114
         (474 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposo...    89   1e-15
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]    88   2e-15
emb|CAN63293.1| hypothetical protein VITISV_025722 [Vitis vinifera]    83   7e-14
gb|AFB73912.1| polyprotein [Citrus sinensis]                           83   9e-14
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      83   9e-14
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]               81   3e-13
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...    81   3e-13
gb|AFB73911.1| polyprotein [Citrus sinensis]                           81   3e-13
gb|KHN13199.1| Retrovirus-related Pol polyprotein from transposo...    80   5e-13
gb|KHN13198.1| Retrovirus-related Pol polyprotein from transposo...    80   5e-13
gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subc...    80   5e-13
ref|XP_006484589.1| PREDICTED: uncharacterized protein LOC102625...    80   6e-13
emb|CBG76256.1| OO_Ba0005L10-OO_Ba0081K17.7 [Oryza officinalis]        79   2e-12
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]               79   2e-12
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]               79   2e-12
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]               79   2e-12
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]         78   2e-12
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-...    78   2e-12
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]                78   2e-12
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                 78   2e-12

>gb|KHN13665.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 337

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 55/152 (36%), Positives = 88/152 (57%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGLMARGRSKNRGFNRNKSRSKSRVQTKGRCFKCG 180
           V  TL S EL+ K +  NK +    + LMARGR + R  +++K++ +S+ + +  C+ C 
Sbjct: 174 VKATLNSRELKKKITE-NKGEGGDPEALMARGRLEKRD-SKSKNKRRSKYKNEKACYYCK 231

Query: 181 EQGHN*HEGRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEASEKWF 360
           ++GH   E    E+     KK NN K  D+ +++     D  E    + ++  + SE+W 
Sbjct: 232 KEGHFRKE--CPER-----KKKNNGKYNDESDIAVVA--DGYESAEVLSISTKKHSEEWI 282

Query: 361 LYSDCSYHMCPNRKWFTTYESIDGGTVLIGNN 456
           L S CS+HM PN +WF++Y+ IDGG VL+GNN
Sbjct: 283 LDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNN 314


>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
          Length = 344

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 63/160 (39%), Positives = 85/160 (53%), Gaps = 4/160 (2%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGLMARGRS--KNRGFNRNKSRSKSRVQTKGRCFK 174
           V   L S EL+       K D    +GL+ARGR+  KN G  R +SRSKSR   K  CFK
Sbjct: 129 VRVALNSRELKKMVFKSRKYDS--GEGLVARGRTRKKNNG-RRGRSRSKSRGNNK--CFK 183

Query: 175 CGEQGHN*HEGRMSEQGVQW*KKNNNEKGQDKKEVSFAKKED--VNEICFSVFMADDEAS 348
           C ++GH  +     ++     K   N++  +  + +FAK+     + +   V  +DDE  
Sbjct: 184 CKKEGH--YVKNXPDR-----KGKENKRNYNSGDATFAKENSNTTDVLLVXVTNSDDE-- 234

Query: 349 EKWFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHARK 468
             W L S CSYHM PN  WF+TY+ IDGG VL+GN  A K
Sbjct: 235 --WILDSGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVACK 272


>emb|CAN63293.1| hypothetical protein VITISV_025722 [Vitis vinifera]
          Length = 347

 Score = 83.2 bits (204), Expect = 7e-14
 Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 9/142 (6%)
 Frame = +1

Query: 58  DDKQQAQGLMA-----RGRSKNRG-FNRNKSRSKSRVQTKGRCFKCGEQGHN*HE-GRMS 216
           D+  Q + LM      RGR+K R   + NKSRSKS+ +   +C+KCG++GH   +     
Sbjct: 81  DESSQGERLMVKSNQERGRNKFRSESSNNKSRSKSKKRKDIQCYKCGKKGHMKRDCPEKK 140

Query: 217 EQGVQW*KKNNNEKGQDKKE--VSFAKKEDVNEICFSVFMADDEASEKWFLYSDCSYHMC 390
           ++G      + N++G  K    V+    E  +    SV  + D  ++ W L S CSYHM 
Sbjct: 141 KRG----SVSENKEGSSKSANVVTEEDSESGDGDMLSVSSSSDHLTDSWILDSTCSYHMT 196

Query: 391 PNRKWFTTYESIDGGTVLIGNN 456
           PN+ WF TY S++ G++L+G++
Sbjct: 197 PNKDWFNTYRSVNSGSILMGSD 218


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 82.8 bits (203), Expect = 9e-14
 Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGL-MARGRSKNRG--FNRNKSRSKSRVQTKGRCF 171
           V  ++L+ E R K     +   QQA+ L + RGRS  RG   ++N  RSKSR +   +C+
Sbjct: 172 VAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVKCY 231

Query: 172 KCGEQGHN*HEGRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEA-- 345
            CG++GH   E   +++     ++   E      +   A   D  EI +S      E   
Sbjct: 232 NCGKKGHVKKECWSNQK-----RREGKEPESSNAQGCVASTSDDGEILYSEATIVSEGRK 286

Query: 346 --SEKWFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHA 462
             S+ W + S  ++HM   R+WF TYE I GG+V +GN+HA
Sbjct: 287 RLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHA 327


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 82.8 bits (203), Expect = 9e-14
 Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
 Frame = +1

Query: 52  NKDDKQQAQGLMARGRSKNRGFNRNKSRSKS------RVQTKGR---CFKCGEQGHN*HE 204
           ++    QA+GL+ RGR + +  N NKSR KS      R +++GR   C  C   GH+  E
Sbjct: 99  SEGSNSQAEGLVVRGRQQEKNTN-NKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISE 157

Query: 205 -GRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEASEKWFLYSDCSY 381
             ++ ++  +  K     K +++ + +    E  +      +    + S++W L + C+Y
Sbjct: 158 CWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTY 217

Query: 382 HMCPNRKWFTTYESIDGGTVLIGNN 456
           HMCPNR WF TYE++ GGTVL+G++
Sbjct: 218 HMCPNRDWFATYEAVQGGTVLMGDD 242


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGL-MARGRSKNRG--FNRNKSRSKSRVQTKGRCF 171
           V   +L  E R K      +  +QA+ L M RGRS  RG   ++N  RSKSR +   +C+
Sbjct: 172 VAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCY 231

Query: 172 KCGEQGHN*HEGRMSEQGVQW*KKNNNEKGQDK--KEVSFAKKEDVNEICFSVFMADDEA 345
            CG +GH   E         W  K N EK  +    +   A   D  EI +S      E 
Sbjct: 232 GCGMKGHVKKEC--------WNNKKNGEKNSEATTSQGCVASTSDDGEILYSEAATSSEG 283

Query: 346 SEK----WFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHA 462
             +    W + S  ++HM P+R WF +YE I  G+V +GN+HA
Sbjct: 284 ERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHA 326


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
 Frame = +1

Query: 52  NKDDKQQAQGLMARGRSKNRGFNRNKSRSKSRVQTKGR---------CFKCGEQGHN*HE 204
           ++    QA+GL+ RGR + +   +N+SR KS    +GR         C  C   GH+  E
Sbjct: 132 SEGSNSQAEGLVVRGRQQKKN-TKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISE 190

Query: 205 -GRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEASEKWFLYSDCSY 381
             ++ ++  +  K     K +++ + +    E  +      +    + S++W L + C+Y
Sbjct: 191 CWKLQDKDKRTRKYIPKGKKEEEGKAAIVTDEKSDAELLVAYAGCAQTSDQWILDTACTY 250

Query: 382 HMCPNRKWFTTYESIDGGTVLIGNN 456
           HMCPNR WF TYE++ GGTVL+G++
Sbjct: 251 HMCPNRDWFATYEAVQGGTVLMGDD 275


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGL-MARGRSKNRG--FNRNKSRSKSRVQTKGRCF 171
           V  ++L+ E R K     +   QQA+ L + RGRS  RG   ++N+ RSK R +   +C+
Sbjct: 172 VAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKKNVKCY 231

Query: 172 KCGEQGHN*HEGRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEA-- 345
            CG++GH   E   +++     ++   E      +   A   D  EI +S      E   
Sbjct: 232 NCGKKGHVKKECWSNQK-----RREGKEPETSNAQGCVASTSDDGEILYSEATTVSEGRK 286

Query: 346 --SEKWFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHA 462
             S+ W + S  ++HM   R+WF TYE I GG+V +GN+HA
Sbjct: 287 RLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHA 327


>gb|KHN13199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 344

 Score = 80.5 bits (197), Expect = 5e-13
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGLMARGRSKNR-GFNRNKSRSKSRVQTKGRCFKC 177
           V T L S EL+ + +  +       +GLM RGR   R  F R +S+S+S+ +   +C  C
Sbjct: 175 VKTALQSWELKRRITD-SYGGTSSGEGLMVRGRMDERKSFQRRRSKSRSKNKNNNKCHNC 233

Query: 178 GEQGHN*HEGRMSEQGVQW*KKNNNEKGQDKKEVS-------FAKKEDVNEICFSVFMAD 336
            ++GH             W K+N  E  +DK   S        +++ D   +   +F++ 
Sbjct: 234 QKEGH-------------W-KRNCPELKKDKVSTSEFGGAAVVSEESDGGNV---LFVSS 276

Query: 337 DEASEKWFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHA 462
           +   + W L S C++HM PNR WF T++++DGG VL+GN+ A
Sbjct: 277 NVNDDDWILDSACTFHMTPNRDWFATFQNVDGGKVLMGNDGA 318


>gb|KHN13198.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Glycine soja]
          Length = 341

 Score = 80.5 bits (197), Expect = 5e-13
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGLMARGRSKNR-GFNRNKSRSKSRVQTKGRCFKC 177
           V T L S EL+ + +  +       +GLM RGR   R  F R +S+S+S+ +   +C  C
Sbjct: 172 VKTALQSWELKRRITD-SYGGTSSGEGLMVRGRMDERKSFQRRRSKSRSKNKNNNKCHNC 230

Query: 178 GEQGHN*HEGRMSEQGVQW*KKNNNEKGQDKKEVS-------FAKKEDVNEICFSVFMAD 336
            ++GH             W K+N  E  +DK   S        +++ D   +   +F++ 
Sbjct: 231 QKEGH-------------W-KRNCPELKKDKVSTSEFGGAAVVSEESDGGNV---LFVSS 273

Query: 337 DEASEKWFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHA 462
           +   + W L S C++HM PNR WF T++++DGG VL+GN+ A
Sbjct: 274 NVNDDDWILDSACTFHMTPNRDWFATFQNVDGGKVLMGNDGA 315


>gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 546

 Score = 80.5 bits (197), Expect = 5e-13
 Identities = 43/144 (29%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
 Frame = +1

Query: 52  NKDDKQQAQGLMARGR-----SKNRGFNRNKSRSKSRVQTKGR---CFKCGEQGHN*HE- 204
           ++    QA+GL+ RGR     +KN+  +++ S  + R +++GR   C  C   GH+  E 
Sbjct: 7   SEGSNSQAEGLVVRGRQLEKNTKNQSRDKSSSSYRGRSKSRGRYRSCKYCKRDGHDISEC 66

Query: 205 GRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEASEKWFLYSDCSYH 384
            ++ ++  +  K     K +++ + +    E  +      +    + S++W L + C+YH
Sbjct: 67  WKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYH 126

Query: 385 MCPNRKWFTTYESIDGGTVLIGNN 456
           MCPNR WF TYE++ GGTVL+G++
Sbjct: 127 MCPNRDWFVTYEAVQGGTVLMGDD 150


>ref|XP_006484589.1| PREDICTED: uncharacterized protein LOC102625372 [Citrus sinensis]
          Length = 1258

 Score = 80.1 bits (196), Expect = 6e-13
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 7/158 (4%)
 Frame = +1

Query: 10  TLLSNELR*KASGGNKDDKQQAQGL-MARGRSKNRG--FNRNKSRSKSRVQTKGRCFKCG 180
           ++L+ E R K     +   QQA+ L + RGRS  RG   N+N+ RSK R +   +C+KCG
Sbjct: 38  SVLNEESRRKNKENIQASSQQAKALSVTRGRSTERGPSGNQNQGRSKFRSKKNVKCYKCG 97

Query: 181 EQGHN*HEGRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEA----S 348
           ++GH   E   +++     +K   E      +   A   D  EI +S      E     S
Sbjct: 98  KKGHVKKECWSNQK-----RKEGKEPESSNAQGCVASTSDDGEILYSEATTVSEGRKRLS 152

Query: 349 EKWFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHA 462
           + W + S  ++HM   R+WF TYE I GG+V +G++HA
Sbjct: 153 DVWLIDSGDTWHMTYQREWFHTYEPISGGSVYMGDDHA 190



 Score = 79.7 bits (195), Expect = 8e-13
 Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
 Frame = +1

Query: 55  KDDKQQAQGL-MARGRSKNRG--FNRNKSRSKSRVQTKGRCFKCGEQGHN*HEGRMSEQG 225
           K+  QQA+ L + RGRS  RG   N+N+ RSK R +   +C+KCG++GH   E   +++ 
Sbjct: 390 KESSQQAKALSVTRGRSTERGPSGNQNQGRSKFRSKKNVKCYKCGKKGHVKKECWSNQK- 448

Query: 226 VQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEA----SEKWFLYSDCSYHMCP 393
               +K   E      +   A   D  EI +S      E     S+ W + S  ++HM  
Sbjct: 449 ----RKEGKEPESSNAQGCVASTSDDGEILYSEATTVSEGRKRLSDVWLIDSGDTWHMTY 504

Query: 394 NRKWFTTYESIDGGTVLIGNNHA 462
            R+WF TYE I GG+V +G++HA
Sbjct: 505 QREWFHTYEPISGGSVYMGDDHA 527


>emb|CBG76256.1| OO_Ba0005L10-OO_Ba0081K17.7 [Oryza officinalis]
          Length = 565

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
 Frame = +1

Query: 52  NKDDKQQAQGLMARGRSKNRGFNRNKSRSKS------RVQTKGRCFKCGEQGHN*HEGRM 213
           ++    QA+GL  RGR + +   +N+SR KS      R ++KGR   C       H+  +
Sbjct: 115 SESSSSQAEGLAVRGRQQEKN-TKNQSRDKSSSSYRRRSKSKGRYKSCKYCKGGRHD--I 171

Query: 214 SEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEA--------------SE 351
           SE    W  +N     +DK+  S+  K +  E   +V + DD++              S+
Sbjct: 172 SEC---WKLQN-----KDKRTESYKPKGNKEEEGKAVIVTDDKSGAELLVAYVGCAQTSD 223

Query: 352 KWFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNN 456
           +W L + C+YHMCPNR WF TYE + GGTVL+G+N
Sbjct: 224 QWILDTACTYHMCPNRDWFVTYEFVQGGTVLMGDN 258


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGL-MARGRSKNRG--FNRNKSRSKSRVQTKGRCF 171
           V   +L  E R K      +  +QA+ L M RGRS  RG   ++N  RSKSR +   +C+
Sbjct: 172 VAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCY 231

Query: 172 KCGEQGHN*HEGRMSEQGVQW*KKNNNEKGQDKK--EVSFAKKEDVNEICFSVFMADDEA 345
            CG +GH   E         W  K N EK  +    +   A   D  EI +S      + 
Sbjct: 232 GCGMKGHVKKEC--------WNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKG 283

Query: 346 SEK----WFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHA 462
             +    W + S  ++HM P+R WF +YE I  G+V +GN+HA
Sbjct: 284 ERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHA 326


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGL-MARGRSKNRG--FNRNKSRSKSRVQTKGRCF 171
           V   +L  E R K      +  +QA+ L M RGRS  RG   ++N  RSKSR +   +C+
Sbjct: 172 VAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCY 231

Query: 172 KCGEQGHN*HEGRMSEQGVQW*KKNNNEKGQDKK--EVSFAKKEDVNEICFSVFMADDEA 345
            CG +GH   E         W  K N EK  +    +   A   D  EI +S      + 
Sbjct: 232 GCGMKGHVKKEC--------WNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKG 283

Query: 346 SEK----WFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHA 462
             +    W + S  ++HM P+R WF +YE I  G+V +GN+HA
Sbjct: 284 ERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHA 326


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
 Frame = +1

Query: 1   VLTTLLSNELR*KASGGNKDDKQQAQGL-MARGRSKNRG--FNRNKSRSKSRVQTKGRCF 171
           V   +L  E R K      +  +QA+ L M RGRS  RG   ++N  RSKSR +   +C+
Sbjct: 172 VAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCY 231

Query: 172 KCGEQGHN*HEGRMSEQGVQW*KKNNNEKGQDKK--EVSFAKKEDVNEICFSVFMADDEA 345
            CG +GH   E         W  K N EK  +    +   A   D  EI +S      + 
Sbjct: 232 GCGMKGHVKKEC--------WNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKG 283

Query: 346 SEK----WFLYSDCSYHMCPNRKWFTTYESIDGGTVLIGNNHA 462
             +    W + S  ++HM P+R WF +YE I  G+V +GN+HA
Sbjct: 284 ERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHA 326


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
 Frame = +1

Query: 52  NKDDKQQAQGLMARGRSKNRGFNRNKSRSKSRVQTKGR---------CFKCGEQGHN*HE 204
           ++    QA+GL+ RG  + +  N NKSR KS    +GR         C  C   GH+  +
Sbjct: 190 SEGSNSQAEGLVVRGSQQEKNTN-NKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISK 248

Query: 205 -GRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEASEKWFLYSDCSY 381
             ++ ++  +  K     K +++ + +    E  +      +    + S++W L + C+Y
Sbjct: 249 CWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTY 308

Query: 382 HMCPNRKWFTTYESIDGGTVLIGNN 456
           HMCPNR WF TYE + GGTVL+G++
Sbjct: 309 HMCPNRDWFATYEVVQGGTVLMGDD 333


>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549746|gb|ABA92543.1|
           retrotransposon protein, putative, Ty1-copia subclass,
           expressed [Oryza sativa Japonica Group]
          Length = 1170

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
 Frame = +1

Query: 52  NKDDKQQAQGLMARGRSKNRGFNRNKSRSKSRVQTKGR---------CFKCGEQGHN*HE 204
           ++    QA+GL+ RGR + +   +N+SR KS    +GR         C  C   G +  E
Sbjct: 142 SEGSNSQAEGLIVRGRQQEKN-RKNQSRDKSSSSYRGRSKSRGNYKSCKYCKRDGRDISE 200

Query: 205 -GRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEASEKWFLYSDCSY 381
             ++ ++  +  K  +  K +++ + +    E  +      +    + S++W L + C+Y
Sbjct: 201 CWKLQDKDKRTEKYISKGKKEEEGKAAVVTDEKSDAELLVAYADCAQTSDQWILDTACTY 260

Query: 382 HMCPNRKWFTTYESIDGGTVLIGNN 456
           HMCPNR WF TYE++ GGTVL+G++
Sbjct: 261 HMCPNRDWFATYEAVQGGTVLMGDD 285


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
 Frame = +1

Query: 52  NKDDKQQAQGLMARGRSKNRGFNRNKSRSKSRVQTKGR---------CFKCGEQGHN*HE 204
           ++    QA+GL+ +G  + +  N NKSR KS    +GR         C  C   GH+  +
Sbjct: 7   SEGSNSQAEGLVVQGSQQEKNTN-NKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISK 65

Query: 205 -GRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEASEKWFLYSDCSY 381
             ++ ++  +  K     K +D+ + +    E  +      +    + S++W L + C+Y
Sbjct: 66  CWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTY 125

Query: 382 HMCPNRKWFTTYESIDGGTVLIGNN 456
           HMCPNR WF TYE + GGTVL+G++
Sbjct: 126 HMCPNRDWFATYEVVQGGTVLMGDD 150


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
 Frame = +1

Query: 52  NKDDKQQAQGLMARGRSKNRGFNRNKSRSKSRVQTKGR---------CFKCGEQGHN*HE 204
           ++    QA+GL+ +G  + +  N NKSR KS    +GR         C  C   GH+  +
Sbjct: 175 SEGSNSQAEGLVVQGSQQEKNTN-NKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISK 233

Query: 205 -GRMSEQGVQW*KKNNNEKGQDKKEVSFAKKEDVNEICFSVFMADDEASEKWFLYSDCSY 381
             ++ ++  +  K     K +D+ + +    E  +      +    + S++W L + C+Y
Sbjct: 234 CWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTY 293

Query: 382 HMCPNRKWFTTYESIDGGTVLIGNN 456
           HMCPNR WF TYE + GGTVL+G++
Sbjct: 294 HMCPNRDWFATYEVVQGGTVLMGDD 318