BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00024423
         (959 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAH67735.1| H0522A01.6 [Oryza sativa Indica Group] gi|116310...   104   9e-20
emb|CAE02183.2| OSJNBa0080E14.14 [Oryza sativa Japonica Group]        103   2e-19
gb|AAX95257.1| retrotransposon protein, putative, Ty3-gypsy sub-...   103   2e-19
emb|CAH65972.1| H1005F08.1 [Oryza sativa Indica Group] gi|116309...   102   3e-19
gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subc...   102   6e-19
gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Jap...   102   6e-19
emb|CAE02386.2| OSJNBb0080H08.12 [Oryza sativa Japonica Group]        101   8e-19
gb|ABA93571.1| retrotransposon protein, putative, Ty3-gypsy subc...   101   8e-19
gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group...   101   8e-19
emb|CAE02458.1| OSJNBa0042D13.11 [Oryza sativa Japonica Group]        101   8e-19
gb|AAL86497.1|AC099040_1 putative polyprotein [Oryza sativa Japo...   101   1e-18
gb|AAP52698.2| retrotransposon protein, putative, Ty3-gypsy subc...   101   1e-18
gb|ABA99486.2| retrotransposon protein, putative, Ty3-gypsy subc...   101   1e-18
emb|CAD40451.2| OSJNBa0041M21.9 [Oryza sativa Japonica Group] gi...   100   1e-18
dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa I...   100   1e-18
emb|CAH66267.1| OSIGBa0136B09.3 [Oryza sativa Indica Group]           100   1e-18
gb|ABG22001.1| retrotransposon protein, putative, Ty3-gypsy subc...   100   1e-18
gb|AAP44586.1| putative polyprotein [Oryza sativa Japonica Group...   100   1e-18
gb|AAK52169.1|AC084831_23 putative polyprotein [Oryza sativa Jap...   100   2e-18
gb|ABA98191.1| retrotransposon protein, putative, Ty3-gypsy subc...   100   2e-18

>emb|CAH67735.1| H0522A01.6 [Oryza sativa Indica Group] gi|116310748|emb|CAH67543.1|
           H0425E08.11 [Oryza sativa Indica Group]
          Length = 1475

 Score =  104 bits (260), Expect = 9e-20
 Identities = 76/261 (29%), Positives = 106/261 (40%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952 SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
           S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N I  E  T
Sbjct: 74  SSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRITAEPIT 133

Query: 775 WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
           W EF A F    +P  ++S    +F +LTQG  +V EY   FYRL+ YAP   +   ++ 
Sbjct: 134 WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFYRLARYAPEDVRNDEERQ 193

Query: 601 EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRHHP 431
           E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+   P
Sbjct: 194 EKFLEGLNDELSYPLMTGDYSDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQRP 253

Query: 430 ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
               G  S  Q         +R+          R  A    A P +              
Sbjct: 254 RLTLGSQSMPQGGSSSVVRPQRQFFNNNVGNNIRNQATRPVAAPTQ------QQPAKREQ 307

Query: 259 XXPTFTCFRCGDPSHRIRDCP 197
                 CF CGDP H    CP
Sbjct: 308 GSKPVVCFNCGDPGHYADKCP 328


>emb|CAE02183.2| OSJNBa0080E14.14 [Oryza sativa Japonica Group]
          Length = 806

 Score =  103 bits (258), Expect = 2e-19
 Identities = 80/262 (30%), Positives = 112/262 (42%), Gaps = 10/262 (3%)
 Frame = -2

Query: 952 SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
           S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N I  E  T
Sbjct: 69  SSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLQGPASEWWDHFRLNRITAEPIT 128

Query: 775 WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
           W EF A F+   +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 129 WLEFTAAFQKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNGEERQ 188

Query: 601 EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRHHP 431
           E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+   P
Sbjct: 189 EKFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKP 248

Query: 430 YGGTSRGQSNGR-GQKYQRRRHRGYQNS---GEFRGHAPLAHALPVRXXXXXXXXXXXXX 263
              T R QS    G  +  R  R + N+      R  AP   A P +             
Sbjct: 249 -RLTLRPQSMPHGGSSFVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQ------QQPAKRE 301

Query: 262 XXXPTFTCFRCGDPSHRIRDCP 197
                  CF CGDP H    CP
Sbjct: 302 QGSKPVVCFNCGDPGHYADKCP 323


>gb|AAX95257.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77550597|gb|ABA93394.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1214

 Score =  103 bits (257), Expect = 2e-19
 Identities = 76/263 (28%), Positives = 106/263 (40%), Gaps = 9/263 (3%)
 Frame = -2

Query: 958  TTSGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEA 782
            T S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E 
Sbjct: 326  TFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTTEP 385

Query: 781  CTWAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPN--IPQYQ 608
             TW EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP       +
Sbjct: 386  ITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRTDEE 445

Query: 607  KNEIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRH 437
            + E F+ GL+    + L+      F ++ D A+R E       Q  R+ A   + QG+  
Sbjct: 446  RQEKFLEGLNDELSYPLMTGDYPDFQKLVDKAIRQEDKYNRMEQKKRQIAQFMAQQGNSQ 505

Query: 436  HP---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXX 266
             P    G  S  Q         +R+          R  AP   A P +            
Sbjct: 506  RPRLTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNLRNQAPRPVAAPTQ------QQPAKR 559

Query: 265  XXXXPTFTCFRCGDPSHRIRDCP 197
                    CF CGDP H    CP
Sbjct: 560  EQGSKPVVCFNCGDPGHYADKCP 582


>emb|CAH65972.1| H1005F08.1 [Oryza sativa Indica Group] gi|116309864|emb|CAH66899.1|
            OSIGBa0099L20.14 [Oryza sativa Indica Group]
          Length = 663

 Score =  102 bits (255), Expect = 3e-19
 Identities = 79/265 (29%), Positives = 109/265 (41%), Gaps = 11/265 (4%)
 Frame = -2

Query: 958  TTSGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEA 782
            T S  T  +EA  W+   E   + +   + EK   A+H L   AS+WW +F  N    E 
Sbjct: 296  TFSSTTNPVEAGDWLHAIEKKLDLLQCIDQEKVSFASHQLHGPASEWWDHFRLNRTTAEP 355

Query: 781  CTWAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPN--IPQYQ 608
             TW EF A F    +P  ++S    +F +LTQG  TV EY   F RL+ YAP       +
Sbjct: 356  ITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRTVTEYLHEFNRLARYAPEDVRTDEE 415

Query: 607  KNEIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRH 437
            + E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+  
Sbjct: 416  RQERFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQQGNSQ 475

Query: 436  HP---YGGTSRGQSNGRGQKYQRRRHRGYQNS--GEFRGHAPLAHALPVRXXXXXXXXXX 272
             P    G  S  Q  G      R +H+ + N+     R  AP   A P +          
Sbjct: 476  RPRLTLGPQSMPQ--GGSSSVVRPQHQFFNNNAGNNIRNQAPRPVAAPTQQQPAKREQGS 533

Query: 271  XXXXXXPTFTCFRCGDPSHRIRDCP 197
                      CF CGDP H    CP
Sbjct: 534  KPG------VCFNCGDPGHYSDKCP 552


>gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1473

 Score =  102 bits (253), Expect = 6e-19
 Identities = 73/261 (27%), Positives = 108/261 (41%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952 SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
           S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E  T
Sbjct: 72  SSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPIT 131

Query: 775 WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
           W EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 132 WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ 191

Query: 601 EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYEITDAQVVREE---AGTYSGQGDRHHP 431
           E F+ GL+    + L+      F ++ D A+R E    ++ +++   A   + QG+   P
Sbjct: 192 EKFLEGLNDELSYPLMTGDYSDFQKLVDKAIRQEDKYNRMEQKKCRIAHFKAQQGNNQKP 251

Query: 430 ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
               G  S  Q         +R+          R  AP   A P +              
Sbjct: 252 RLTLGSQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPAQ------QQPVKREQ 305

Query: 259 XXPTFTCFRCGDPSHRIRDCP 197
                 CF CGDP H    CP
Sbjct: 306 GSKPVVCFNCGDPGHYADKCP 326


>gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Japonica Group]
           gi|20042905|gb|AAM08733.1|AC116601_26 Putative
           polyprotein [Oryza sativa Japonica Group]
           gi|31429938|gb|AAP51922.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1443

 Score =  102 bits (253), Expect = 6e-19
 Identities = 76/261 (29%), Positives = 106/261 (40%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952 SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
           S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N I  E  T
Sbjct: 42  SSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRITAEPIT 101

Query: 775 WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
           W EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 102 WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ 161

Query: 601 EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRHHP 431
           E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG    P
Sbjct: 162 EKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNCMEQRKRRIAHFKAQQGSNQKP 221

Query: 430 ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
               G  S  Q         +R+          R  AP   A P +              
Sbjct: 222 RLTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQ------QQPAKREQ 275

Query: 259 XXPTFTCFRCGDPSHRIRDCP 197
              +  CF CGDP H    CP
Sbjct: 276 GSKSVVCFNCGDPGHYADKCP 296


>emb|CAE02386.2| OSJNBb0080H08.12 [Oryza sativa Japonica Group]
          Length = 1666

 Score =  101 bits (252), Expect = 8e-19
 Identities = 76/261 (29%), Positives = 106/261 (40%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952  SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
            S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E  T
Sbjct: 326  SSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPIT 385

Query: 775  WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
            W EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 386  WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ 445

Query: 601  EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRHHP 431
            E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+   P
Sbjct: 446  EKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKP 505

Query: 430  ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
                G  S  Q         +R+          R  AP   A PV+              
Sbjct: 506  RLTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNKAPRPVAAPVQ------QQPAKREQ 559

Query: 259  XXPTFTCFRCGDPSHRIRDCP 197
                  CF CGDP H    CP
Sbjct: 560  GSKPVVCFNCGDPGHYADKCP 580


>gb|ABA93571.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1383

 Score =  101 bits (252), Expect = 8e-19
 Identities = 76/263 (28%), Positives = 105/263 (39%), Gaps = 9/263 (3%)
 Frame = -2

Query: 958 TTSGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEA 782
           T S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E 
Sbjct: 71  TFSSTTNPVEAGDWLHAIERKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEP 130

Query: 781 CTWAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPN--IPQYQ 608
            TW EF A F    +P  ++S    +F +LTQG  TV EY   F RL+ YAP       +
Sbjct: 131 ITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRTVTEYLHEFNRLARYAPEDVRTDEE 190

Query: 607 KNEIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRH 437
           + E F+ GL+    + L+      F ++ D A+R E       Q  R+ A   + QG+  
Sbjct: 191 RQERFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRQIAHFKAQQGNSQ 250

Query: 436 HP---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXX 266
            P    G  S  Q         +R+          R  AP   A   +            
Sbjct: 251 RPRLTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAASTQQQPAKREQGSKP 310

Query: 265 XXXXPTFTCFRCGDPSHRIRDCP 197
                   CF CGDP H    CP
Sbjct: 311 G------VCFNCGDPGHYADKCP 327


>gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|54287634|gb|AAV31378.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1400

 Score =  101 bits (252), Expect = 8e-19
 Identities = 75/261 (28%), Positives = 104/261 (39%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952 SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
           S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E  T
Sbjct: 72  SSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPIT 131

Query: 775 WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
           W EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 132 WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ 191

Query: 601 EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRHHP 431
           E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG    P
Sbjct: 192 EKFLEGLNDELSYPLMTGDYSDFQKLMDKAIRQEDKYNRMEQKKRRIAHFKAQQGSNQKP 251

Query: 430 ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
               G  S  Q         +R+          R  AP   A P +              
Sbjct: 252 RLTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQ------QQPAKREP 305

Query: 259 XXPTFTCFRCGDPSHRIRDCP 197
                 CF CGDP H    CP
Sbjct: 306 GSKPVVCFNCGDPGHYADKCP 326


>emb|CAE02458.1| OSJNBa0042D13.11 [Oryza sativa Japonica Group]
          Length = 992

 Score =  101 bits (252), Expect = 8e-19
 Identities = 75/258 (29%), Positives = 105/258 (40%), Gaps = 9/258 (3%)
 Frame = -2

Query: 943  TTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACTWAE 767
            T  IEA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E  TW E
Sbjct: 691  TNPIEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPITWLE 750

Query: 766  FRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQYQK--NEIF 593
            F A F    +P  ++S    +F +L QG  TV EY   F RL+ YAP   +  +   E F
Sbjct: 751  FTAAFRKTHIPSGVVSLKKKEFRSLNQGSRTVTEYLHEFNRLARYAPEDVRTDEECQERF 810

Query: 592  IRGLSSSAKWDLLPLVNDSFSRIFDLALRYEITD---AQVVREEAGTYSGQGDRHHP--- 431
            ++GL+    + L+      F ++ D A+R E  +    Q  R+ A   + QG+   P   
Sbjct: 811  LKGLNDELSYPLMTGDYHDFQKLVDKAIRQEEKNNRMEQKKRQIAHFKAQQGNSQRPRLT 870

Query: 430  YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXXXXP 251
             G  S  Q         +R+          R  AP   A P +                 
Sbjct: 871  LGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPHPGAAPTQPQPAKREQGSKPG---- 926

Query: 250  TFTCFRCGDPSHRIRDCP 197
               CF CGDP H    CP
Sbjct: 927  --VCFNCGDPGHYSDKCP 942


>gb|AAL86497.1|AC099040_1 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1722

 Score =  101 bits (251), Expect = 1e-18
 Identities = 75/263 (28%), Positives = 106/263 (40%), Gaps = 9/263 (3%)
 Frame = -2

Query: 958  TTSGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEA 782
            T S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E 
Sbjct: 319  TFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEP 378

Query: 781  CTWAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQ 608
             TW EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   +
Sbjct: 379  ITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLACYAPEDVRNDEE 438

Query: 607  KNEIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRH 437
            + E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+  
Sbjct: 439  RQEKFLEGLNDELSYPLMTGDYSDFQKLVDKAIRQEDKYNRMEQKKRRMAQFKTQQGNNQ 498

Query: 436  HP---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXX 266
             P    G  S            +R+          R  AP   A+P +            
Sbjct: 499  RPRLTLGPQSMPHGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAVPTQ------QQPAKR 552

Query: 265  XXXXPTFTCFRCGDPSHRIRDCP 197
                    CF CGDP H    CP
Sbjct: 553  EQGSKPVVCFNCGDPGHYADKCP 575


>gb|AAP52698.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1713

 Score =  101 bits (251), Expect = 1e-18
 Identities = 75/263 (28%), Positives = 106/263 (40%), Gaps = 9/263 (3%)
 Frame = -2

Query: 958  TTSGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEA 782
            T S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E 
Sbjct: 310  TFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEP 369

Query: 781  CTWAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQ 608
             TW EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   +
Sbjct: 370  ITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLACYAPEDVRNDEE 429

Query: 607  KNEIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRH 437
            + E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+  
Sbjct: 430  RQEKFLEGLNDELSYPLMTGDYSDFQKLVDKAIRQEDKYNRMEQKKRRMAQFKTQQGNNQ 489

Query: 436  HP---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXX 266
             P    G  S            +R+          R  AP   A+P +            
Sbjct: 490  RPRLTLGPQSMPHGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAVPTQ------QQPAKR 543

Query: 265  XXXXPTFTCFRCGDPSHRIRDCP 197
                    CF CGDP H    CP
Sbjct: 544  EQGSKPVVCFNCGDPGHYADKCP 566


>gb|ABA99486.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1595

 Score =  101 bits (251), Expect = 1e-18
 Identities = 76/263 (28%), Positives = 105/263 (39%), Gaps = 9/263 (3%)
 Frame = -2

Query: 958  TTSGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEA 782
            T S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E 
Sbjct: 294  TFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFCLNRTTAEP 353

Query: 781  CTWAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPN--IPQYQ 608
             TW EF A F    +P  ++S    +F +LTQG  TV EY   F RL+ YAP       +
Sbjct: 354  ITWLEFTAAFRKTHIPSGVVSLKKKEFKSLTQGSRTVTEYLHEFNRLARYAPEDVRTDEE 413

Query: 607  KNEIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRH 437
            + E F+ GL+    + L+      F ++ D A+  E       Q  R  A   + QG+  
Sbjct: 414  RQERFLEGLNDELSYPLMTGDYHDFQKLVDKAICQEDKYNRMKQKKRRIAHFKAQQGNSQ 473

Query: 436  HP---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXX 266
             P    G  S  Q         +R+          R  APL  A P +            
Sbjct: 474  KPRLTLGPQSMPQGGSLSVVRPQRQFFNNNAGNNIRNQAPLPVAAPTQQQPAKKEQGSKP 533

Query: 265  XXXXPTFTCFRCGDPSHRIRDCP 197
                    CF CG+P H    CP
Sbjct: 534  G------VCFNCGEPGHYSDKCP 550


>emb|CAD40451.2| OSJNBa0041M21.9 [Oryza sativa Japonica Group]
           gi|38343993|emb|CAD40358.2| OSJNBa0093P23.4 [Oryza
           sativa Japonica Group]
          Length = 1543

 Score =  100 bits (250), Expect = 1e-18
 Identities = 75/261 (28%), Positives = 105/261 (40%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952 SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
           S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E  T
Sbjct: 146 SSTTNLVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPIT 205

Query: 775 WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
           W EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 206 WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ 265

Query: 601 EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRHHP 431
           E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+   P
Sbjct: 266 EKFLEGLNDELSYPLMTGDYSDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKP 325

Query: 430 ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
               G  S  Q         +R+          R  AP   A P +              
Sbjct: 326 RLTLGPQSVPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQ------QQPAKREQ 379

Query: 259 XXPTFTCFRCGDPSHRIRDCP 197
                 CF CGDP H    CP
Sbjct: 380 GSKPVVCFNCGDPGHYADKCP 400


>dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa Indica Group]
          Length = 1475

 Score =  100 bits (250), Expect = 1e-18
 Identities = 75/261 (28%), Positives = 104/261 (39%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952 SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
           S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E  T
Sbjct: 74  SSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPIT 133

Query: 775 WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
           W EF A F    +P  +MS    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 134 WLEFAAAFRKTHIPSGVMSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ 193

Query: 601 EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYEIT---DAQVVREEAGTYSGQGDRHHP 431
           E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG    P
Sbjct: 194 EKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNFMEQKKRRMAQFKAQQGSNQKP 253

Query: 430 ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
              +G  S            +R+          R  AP   A P +              
Sbjct: 254 RLTFGPQSMPHGGSSSVVRPQRQFFNNNVGNNIRNQAPRPVATPAQ------QQPAKREQ 307

Query: 259 XXPTFTCFRCGDPSHRIRDCP 197
                 CF CGDP H    CP
Sbjct: 308 GSKPVVCFNCGDPGHYADKCP 328


>emb|CAH66267.1| OSIGBa0136B09.3 [Oryza sativa Indica Group]
          Length = 1469

 Score =  100 bits (250), Expect = 1e-18
 Identities = 75/261 (28%), Positives = 105/261 (40%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952 SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
           S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E  T
Sbjct: 72  SSTTNLVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPIT 131

Query: 775 WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
           W EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 132 WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ 191

Query: 601 EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRHHP 431
           E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+   P
Sbjct: 192 EKFLEGLNDELSYPLMTGDYSDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKP 251

Query: 430 ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
               G  S  Q         +R+          R  AP   A P +              
Sbjct: 252 RLTLGPQSVPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQ------QQPAKREQ 305

Query: 259 XXPTFTCFRCGDPSHRIRDCP 197
                 CF CGDP H    CP
Sbjct: 306 GSKPVVCFNCGDPGHYADKCP 326


>gb|ABG22001.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1751

 Score =  100 bits (250), Expect = 1e-18
 Identities = 74/261 (28%), Positives = 106/261 (40%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952  SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
            S  T  +EA  W+   +   + +  T+ EK   A+H L   AS+WW +F  N    E  T
Sbjct: 364  SSTTNPVEAGDWLHAIDKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPIT 423

Query: 775  WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
            W EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 424  WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ 483

Query: 601  EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRHHP 431
            E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+   P
Sbjct: 484  EKFLEGLNDELSYPLMTGDYADFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQRP 543

Query: 430  ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
                G  S  Q         +R+          R  AP   A P +              
Sbjct: 544  RLTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQ------QQPAKREQ 597

Query: 259  XXPTFTCFRCGDPSHRIRDCP 197
               +  CF CGDP H    CP
Sbjct: 598  GSKSVVCFNCGDPGHYADKCP 618


>gb|AAP44586.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108709242|gb|ABF97037.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1436

 Score =  100 bits (250), Expect = 1e-18
 Identities = 76/263 (28%), Positives = 105/263 (39%), Gaps = 9/263 (3%)
 Frame = -2

Query: 958 TTSGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEA 782
           T S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E 
Sbjct: 71  TFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEP 130

Query: 781 CTWAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPN--IPQYQ 608
            TW EF A F    +P  ++S    +F +LTQG  TV EY   F RL+ YAP       +
Sbjct: 131 ITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSHTVTEYLHEFNRLARYAPEDVRTDEE 190

Query: 607 KNEIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRH 437
           + E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+  
Sbjct: 191 RQERFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQQGNSQ 250

Query: 436 HPY---GGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXX 266
            P+   G  S  Q         +R+          R  AP   A P +            
Sbjct: 251 RPHLTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQQQPAKREQGSKP 310

Query: 265 XXXXPTFTCFRCGDPSHRIRDCP 197
                   CF CGD  H    CP
Sbjct: 311 G------VCFNCGDLGHYADKCP 327


>gb|AAK52169.1|AC084831_23 putative polyprotein [Oryza sativa Japonica Group]
            gi|24796793|gb|AAN64470.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1473

 Score =  100 bits (249), Expect = 2e-18
 Identities = 76/263 (28%), Positives = 104/263 (39%), Gaps = 9/263 (3%)
 Frame = -2

Query: 958  TTSGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEA 782
            T S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E 
Sbjct: 324  TFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEP 383

Query: 781  CTWAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPN--IPQYQ 608
             TW EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP       Q
Sbjct: 384  ITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRTDEQ 443

Query: 607  KNEIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRH 437
            + E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+  
Sbjct: 444  RQERFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQQGNSQ 503

Query: 436  HP---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXX 266
             P    G  S  Q         +R+          R  AP   A   +            
Sbjct: 504  RPRLTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAASTQQQPAKKEQGIKP 563

Query: 265  XXXXPTFTCFRCGDPSHRIRDCP 197
                    CF CGDP H    CP
Sbjct: 564  G------VCFNCGDPGHYADKCP 580


>gb|ABA98191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1412

 Score =  100 bits (249), Expect = 2e-18
 Identities = 75/261 (28%), Positives = 105/261 (40%), Gaps = 9/261 (3%)
 Frame = -2

Query: 952 SGKTTAIEARYWIRECENIFEKMTLTEVEKCHLAAHHLDKAASDWW-YFIKNSIDQEACT 776
           S  T  +EA  W+   E   + +  T+ EK   A+H L   AS+WW +F  N    E  T
Sbjct: 71  SSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPIT 130

Query: 775 WAEFRAKFEACFMPPCIMSQLADDFLTLTQGEMTVMEYRSHFYRLSHYAPNIPQ--YQKN 602
           W EF A F    +P  ++S    +F +LTQG  +V EY   F RL+ YAP   +   ++ 
Sbjct: 131 WLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ 190

Query: 601 EIFIRGLSSSAKWDLLPLVNDSFSRIFDLALRYE---ITDAQVVREEAGTYSGQGDRHHP 431
           E F+ GL+    + L+      F ++ D A+R E       Q  R  A   + QG+   P
Sbjct: 191 EKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKP 250

Query: 430 ---YGGTSRGQSNGRGQKYQRRRHRGYQNSGEFRGHAPLAHALPVRXXXXXXXXXXXXXX 260
               G  S  Q         +R+          R  AP   A P +              
Sbjct: 251 RLTLGPQSMPQGGSSSVVCPQRQFFNNNAGNNIRNQAPRPVAAPAQ------QQPAKREQ 304

Query: 259 XXPTFTCFRCGDPSHRIRDCP 197
                 CF CGDP H    CP
Sbjct: 305 GSKPVVCFNCGDPGHYADKCP 325