BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00019820
         (1588 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV su...   548   e-153
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su...   548   e-153
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su...   531   e-148
ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV su...   531   e-148
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r...   531   e-148
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su...   531   e-148
ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su...   529   e-147
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   529   e-147
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   529   e-147
ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   521   e-145
ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV su...   520   e-144
ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV su...   520   e-144
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su...   520   e-144
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   519   e-144
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   512   e-142
ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV su...   508   e-141
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   508   e-141
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   508   e-141
emb|CDP09818.1| unnamed protein product [Coffea canephora]            506   e-140
ref|XP_012574547.1| PREDICTED: DNA-directed RNA polymerase IV su...   506   e-140

>ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Nelumbo nucifera]
          Length = 1373

 Score =  548 bits (1411), Expect = e-153
 Identities = 297/535 (55%), Positives = 380/535 (71%), Gaps = 6/535 (1%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+CCSPL GDFDGDCLHG+I Q+I+ +VELRELV++ +QLVNGQ
Sbjct: 317  ALSVKVLPINSVVSINPLCCSPLSGDFDGDCLHGFIAQAIDCRVELRELVALSKQLVNGQ 376

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            NG+NLLS  HDSL+AA L+ +  VFLD FQMQQ+ ML                  QL  P
Sbjct: 377  NGQNLLSLSHDSLSAAHLVTQNGVFLDMFQMQQLKML---------------CPHQLQIP 421

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
             I KA   + P+WTGKQLF ML P  FDY+ PS+G+ IS GE++ S  ESSWL+    +I
Sbjct: 422  VILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELLCSFGESSWLRSRAGSI 481

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            FS L+  Y  +A D L +A+ V  EW+S+ G SVSLSD+Y+ S+S+SR  ML+EV  GL 
Sbjct: 482  FSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDSHSRKNMLDEVRCGLQ 541

Query: 868  EAEQKFHTKEFMVDHAMV---RDDEDDLDFKVLEAGQTSLS-KKVTVLNQLSLGAFKEVF 701
            E ++K + K+ MVD  MV   R D ++         Q   S ++  VL Q+S+ +F+E F
Sbjct: 542  EIKKKIYIKQLMVDPEMVHLLRYDGENTKTNGYRVDQECPSNQESVVLCQVSVSSFREAF 601

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCKSKFKS 521
             D+QS +  Y SNDNSLLAM +AGSKGN+LK++QQG+ LGLQH+S+PLSF IPCK    S
Sbjct: 602  HDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHASVPLSFQIPCKLSCAS 661

Query: 520  -DYE-AIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVPGTIFKK 347
             +Y+ + D P  S +N+PYAVVE+SFL GL+P+ECF+HSVS+R  SF +NA++PGT+ +K
Sbjct: 662  WNYQKSHDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTRDNSFGENADLPGTLTRK 721

Query: 346  LMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSVQSGDPV 167
            LMF+MRDLY+AYDGTVR++ GN L QFSYG  K  SVQ+         + YD V  G PV
Sbjct: 722  LMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCFKGDSVQDPCGLFGGSPNAYDGV-GGQPV 780

Query: 166  GSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSKR 2
            GS +ACSISEAAYSALDQPIS LE SPLLNLK +LE  QK  + +QTASLFLSK+
Sbjct: 781  GSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKNASADQTASLFLSKK 835


>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nelumbo nucifera]
          Length = 1489

 Score =  548 bits (1411), Expect = e-153
 Identities = 297/535 (55%), Positives = 380/535 (71%), Gaps = 6/535 (1%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+CCSPL GDFDGDCLHG+I Q+I+ +VELRELV++ +QLVNGQ
Sbjct: 439  ALSVKVLPINSVVSINPLCCSPLSGDFDGDCLHGFIAQAIDCRVELRELVALSKQLVNGQ 498

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            NG+NLLS  HDSL+AA L+ +  VFLD FQMQQ+ ML                  QL  P
Sbjct: 499  NGQNLLSLSHDSLSAAHLVTQNGVFLDMFQMQQLKML---------------CPHQLQIP 543

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
             I KA   + P+WTGKQLF ML P  FDY+ PS+G+ IS GE++ S  ESSWL+    +I
Sbjct: 544  VILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELLCSFGESSWLRSRAGSI 603

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            FS L+  Y  +A D L +A+ V  EW+S+ G SVSLSD+Y+ S+S+SR  ML+EV  GL 
Sbjct: 604  FSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDSHSRKNMLDEVRCGLQ 663

Query: 868  EAEQKFHTKEFMVDHAMV---RDDEDDLDFKVLEAGQTSLS-KKVTVLNQLSLGAFKEVF 701
            E ++K + K+ MVD  MV   R D ++         Q   S ++  VL Q+S+ +F+E F
Sbjct: 664  EIKKKIYIKQLMVDPEMVHLLRYDGENTKTNGYRVDQECPSNQESVVLCQVSVSSFREAF 723

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCKSKFKS 521
             D+QS +  Y SNDNSLLAM +AGSKGN+LK++QQG+ LGLQH+S+PLSF IPCK    S
Sbjct: 724  HDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHASVPLSFQIPCKLSCAS 783

Query: 520  -DYE-AIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVPGTIFKK 347
             +Y+ + D P  S +N+PYAVVE+SFL GL+P+ECF+HSVS+R  SF +NA++PGT+ +K
Sbjct: 784  WNYQKSHDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTRDNSFGENADLPGTLTRK 843

Query: 346  LMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSVQSGDPV 167
            LMF+MRDLY+AYDGTVR++ GN L QFSYG  K  SVQ+         + YD V  G PV
Sbjct: 844  LMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCFKGDSVQDPCGLFGGSPNAYDGV-GGQPV 902

Query: 166  GSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSKR 2
            GS +ACSISEAAYSALDQPIS LE SPLLNLK +LE  QK  + +QTASLFLSK+
Sbjct: 903  GSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKNASADQTASLFLSKK 957


>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Gossypium raimondii]
          Length = 1300

 Score =  531 bits (1369), Expect = e-148
 Identities = 284/541 (52%), Positives = 372/541 (68%), Gaps = 14/541 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+ CSP RGDFDGDCLHGY+PQSIN++VEL ELVS+DRQL+NGQ
Sbjct: 438  ALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQ 497

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA+L++E  V L+ FQMQQ+ M       +               P
Sbjct: 498  SGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPL---------------P 542

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA    NPVWTGKQLFSMLFPP+FDY+   +G+ I  G++I SS  SSWL+D D N+
Sbjct: 543  AIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNL 602

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  LIK Y  K  D L +A+ VL EW+S+RGLSVSL DLYL  ++ S+  M++E+ YGL 
Sbjct: 603  FQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 662

Query: 868  EAEQKFHTKEFMVDHA---MVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVF 701
            EAEQ  + K+ MVD     +  +DE+   F VL+  Q    K +   L+Q S+ +FK+VF
Sbjct: 663  EAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQVF 722

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCKSKFKS 521
            RD+Q+ +  Y + DNSL  M +AGSKGN+LKL+Q  + LGLQHS +PLSF  P +    +
Sbjct: 723  RDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSCAA 782

Query: 520  ---------DYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEV 368
                       +  DT +S+   +PYAVVESSF+KGL+P+ECF+HSV++R  SF+DNA++
Sbjct: 783  WNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNADL 842

Query: 367  PGTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVE-STYD 191
            PGT+ ++LMFFMRDL  AYDGTVR++ G+ + QF Y + K +    +   +L  + S+  
Sbjct: 843  PGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGSSLP 902

Query: 190  SVQSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFL 11
                G PVGS +AC+ISEAAYSALDQPIS LESSPLLNLK +LE   K++  +QT SLFL
Sbjct: 903  DGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSLFL 962

Query: 10   S 8
            S
Sbjct: 963  S 963


>ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Gossypium raimondii]
          Length = 1340

 Score =  531 bits (1369), Expect = e-148
 Identities = 284/541 (52%), Positives = 372/541 (68%), Gaps = 14/541 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+ CSP RGDFDGDCLHGY+PQSIN++VEL ELVS+DRQL+NGQ
Sbjct: 297  ALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQ 356

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA+L++E  V L+ FQMQQ+ M       +               P
Sbjct: 357  SGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPL---------------P 401

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA    NPVWTGKQLFSMLFPP+FDY+   +G+ I  G++I SS  SSWL+D D N+
Sbjct: 402  AIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNL 461

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  LIK Y  K  D L +A+ VL EW+S+RGLSVSL DLYL  ++ S+  M++E+ YGL 
Sbjct: 462  FQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 521

Query: 868  EAEQKFHTKEFMVDHA---MVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVF 701
            EAEQ  + K+ MVD     +  +DE+   F VL+  Q    K +   L+Q S+ +FK+VF
Sbjct: 522  EAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQVF 581

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCKSKFKS 521
            RD+Q+ +  Y + DNSL  M +AGSKGN+LKL+Q  + LGLQHS +PLSF  P +    +
Sbjct: 582  RDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSCAA 641

Query: 520  ---------DYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEV 368
                       +  DT +S+   +PYAVVESSF+KGL+P+ECF+HSV++R  SF+DNA++
Sbjct: 642  WNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNADL 701

Query: 367  PGTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVE-STYD 191
            PGT+ ++LMFFMRDL  AYDGTVR++ G+ + QF Y + K +    +   +L  + S+  
Sbjct: 702  PGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGSSLP 761

Query: 190  SVQSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFL 11
                G PVGS +AC+ISEAAYSALDQPIS LESSPLLNLK +LE   K++  +QT SLFL
Sbjct: 762  DGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSLFL 821

Query: 10   S 8
            S
Sbjct: 822  S 822


>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  531 bits (1369), Expect = e-148
 Identities = 284/541 (52%), Positives = 372/541 (68%), Gaps = 14/541 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+ CSP RGDFDGDCLHGY+PQSIN++VEL ELVS+DRQL+NGQ
Sbjct: 435  ALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQ 494

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA+L++E  V L+ FQMQQ+ M       +               P
Sbjct: 495  SGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPL---------------P 539

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA    NPVWTGKQLFSMLFPP+FDY+   +G+ I  G++I SS  SSWL+D D N+
Sbjct: 540  AIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNL 599

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  LIK Y  K  D L +A+ VL EW+S+RGLSVSL DLYL  ++ S+  M++E+ YGL 
Sbjct: 600  FQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 659

Query: 868  EAEQKFHTKEFMVDHA---MVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVF 701
            EAEQ  + K+ MVD     +  +DE+   F VL+  Q    K +   L+Q S+ +FK+VF
Sbjct: 660  EAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQVF 719

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCKSKFKS 521
            RD+Q+ +  Y + DNSL  M +AGSKGN+LKL+Q  + LGLQHS +PLSF  P +    +
Sbjct: 720  RDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSCAA 779

Query: 520  ---------DYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEV 368
                       +  DT +S+   +PYAVVESSF+KGL+P+ECF+HSV++R  SF+DNA++
Sbjct: 780  WNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNADL 839

Query: 367  PGTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVE-STYD 191
            PGT+ ++LMFFMRDL  AYDGTVR++ G+ + QF Y + K +    +   +L  + S+  
Sbjct: 840  PGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGSSLP 899

Query: 190  SVQSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFL 11
                G PVGS +AC+ISEAAYSALDQPIS LESSPLLNLK +LE   K++  +QT SLFL
Sbjct: 900  DGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSLFL 959

Query: 10   S 8
            S
Sbjct: 960  S 960


>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X1 [Gossypium raimondii]
            gi|763758424|gb|KJB25755.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
            gi|763758426|gb|KJB25757.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
          Length = 1481

 Score =  531 bits (1369), Expect = e-148
 Identities = 284/541 (52%), Positives = 372/541 (68%), Gaps = 14/541 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+ CSP RGDFDGDCLHGY+PQSIN++VEL ELVS+DRQL+NGQ
Sbjct: 438  ALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQ 497

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA+L++E  V L+ FQMQQ+ M       +               P
Sbjct: 498  SGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPL---------------P 542

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA    NPVWTGKQLFSMLFPP+FDY+   +G+ I  G++I SS  SSWL+D D N+
Sbjct: 543  AIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNL 602

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  LIK Y  K  D L +A+ VL EW+S+RGLSVSL DLYL  ++ S+  M++E+ YGL 
Sbjct: 603  FQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 662

Query: 868  EAEQKFHTKEFMVDHA---MVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVF 701
            EAEQ  + K+ MVD     +  +DE+   F VL+  Q    K +   L+Q S+ +FK+VF
Sbjct: 663  EAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQVF 722

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCKSKFKS 521
            RD+Q+ +  Y + DNSL  M +AGSKGN+LKL+Q  + LGLQHS +PLSF  P +    +
Sbjct: 723  RDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSCAA 782

Query: 520  ---------DYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEV 368
                       +  DT +S+   +PYAVVESSF+KGL+P+ECF+HSV++R  SF+DNA++
Sbjct: 783  WNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNADL 842

Query: 367  PGTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVE-STYD 191
            PGT+ ++LMFFMRDL  AYDGTVR++ G+ + QF Y + K +    +   +L  + S+  
Sbjct: 843  PGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGSSLP 902

Query: 190  SVQSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFL 11
                G PVGS +AC+ISEAAYSALDQPIS LESSPLLNLK +LE   K++  +QT SLFL
Sbjct: 903  DGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSLFL 962

Query: 10   S 8
            S
Sbjct: 963  S 963


>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Vitis
            vinifera]
          Length = 1354

 Score =  529 bits (1362), Expect = e-147
 Identities = 289/540 (53%), Positives = 376/540 (69%), Gaps = 11/540 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+CCSP RGDFDGDCLHGYIPQS++S+VEL ELV+++RQL+N Q
Sbjct: 318  ALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQ 377

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS   DSL+AA L+ E  V L+ FQMQQ+ M                   QL +P
Sbjct: 378  SGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPY---------------QLQSP 422

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA      VWTGKQLFSML PP F+Y+ P NG+ IS GE+I SS  S+WL+D D N+
Sbjct: 423  AIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNL 482

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            FS L+K    KA D L +A+ VL EW+S+RGLSVSLSD+YL S+S SR  M++EV  GL 
Sbjct: 483  FSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLL 542

Query: 868  EAEQKFHTKEFMVDHA---MVRDDEDDLDFKVLEAGQTSLSKK-VTVLNQLSLGAFKEVF 701
             AEQ  H K+ +VD +   ++   E++ +  V +       ++    L Q S+ AFK+ F
Sbjct: 543  VAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKF 602

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIP----CKS 533
            RD+Q+ V  Y + DNSLLAM +AGSKGN+LKL+QQG+ LGLQHS +PLSF IP    C +
Sbjct: 603  RDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAA 662

Query: 532  KFKSDYEAI---DTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVPG 362
              K     +   DT + +++ +PYAVVE+SFL GL+P+ECF+HSV+SR  SF+DNA++PG
Sbjct: 663  WNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPG 722

Query: 361  TIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSVQ 182
            T+ ++LMFFMRDLY+AYDGTVR++ GN L QFSY +   S+  +  N +      YD   
Sbjct: 723  TLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINED---TCAYD--M 777

Query: 181  SGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSKR 2
             G PVGS +AC+ISEAAYSALDQPIS LE SPLLNLK +LE   +K+  ++T SLFLSK+
Sbjct: 778  GGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKK 837


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
            vinifera]
          Length = 1458

 Score =  529 bits (1362), Expect = e-147
 Identities = 289/540 (53%), Positives = 376/540 (69%), Gaps = 11/540 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+CCSP RGDFDGDCLHGYIPQS++S+VEL ELV+++RQL+N Q
Sbjct: 424  ALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQ 483

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS   DSL+AA L+ E  V L+ FQMQQ+ M                   QL +P
Sbjct: 484  SGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPY---------------QLQSP 528

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA      VWTGKQLFSML PP F+Y+ P NG+ IS GE+I SS  S+WL+D D N+
Sbjct: 529  AIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNL 588

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            FS L+K    KA D L +A+ VL EW+S+RGLSVSLSD+YL S+S SR  M++EV  GL 
Sbjct: 589  FSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLL 648

Query: 868  EAEQKFHTKEFMVDHA---MVRDDEDDLDFKVLEAGQTSLSKK-VTVLNQLSLGAFKEVF 701
             AEQ  H K+ +VD +   ++   E++ +  V +       ++    L Q S+ AFK+ F
Sbjct: 649  VAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKF 708

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIP----CKS 533
            RD+Q+ V  Y + DNSLLAM +AGSKGN+LKL+QQG+ LGLQHS +PLSF IP    C +
Sbjct: 709  RDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAA 768

Query: 532  KFKSDYEAI---DTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVPG 362
              K     +   DT + +++ +PYAVVE+SFL GL+P+ECF+HSV+SR  SF+DNA++PG
Sbjct: 769  WNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPG 828

Query: 361  TIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSVQ 182
            T+ ++LMFFMRDLY+AYDGTVR++ GN L QFSY +   S+  +  N +      YD   
Sbjct: 829  TLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINED---TCAYD--M 883

Query: 181  SGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSKR 2
             G PVGS +AC+ISEAAYSALDQPIS LE SPLLNLK +LE   +K+  ++T SLFLSK+
Sbjct: 884  GGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKK 943


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
            vinifera]
          Length = 1460

 Score =  529 bits (1362), Expect = e-147
 Identities = 289/540 (53%), Positives = 376/540 (69%), Gaps = 11/540 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+CCSP RGDFDGDCLHGYIPQS++S+VEL ELV+++RQL+N Q
Sbjct: 424  ALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQ 483

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS   DSL+AA L+ E  V L+ FQMQQ+ M                   QL +P
Sbjct: 484  SGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPY---------------QLQSP 528

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA      VWTGKQLFSML PP F+Y+ P NG+ IS GE+I SS  S+WL+D D N+
Sbjct: 529  AIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNL 588

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            FS L+K    KA D L +A+ VL EW+S+RGLSVSLSD+YL S+S SR  M++EV  GL 
Sbjct: 589  FSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLL 648

Query: 868  EAEQKFHTKEFMVDHA---MVRDDEDDLDFKVLEAGQTSLSKK-VTVLNQLSLGAFKEVF 701
             AEQ  H K+ +VD +   ++   E++ +  V +       ++    L Q S+ AFK+ F
Sbjct: 649  VAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKF 708

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIP----CKS 533
            RD+Q+ V  Y + DNSLLAM +AGSKGN+LKL+QQG+ LGLQHS +PLSF IP    C +
Sbjct: 709  RDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAA 768

Query: 532  KFKSDYEAI---DTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVPG 362
              K     +   DT + +++ +PYAVVE+SFL GL+P+ECF+HSV+SR  SF+DNA++PG
Sbjct: 769  WNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPG 828

Query: 361  TIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSVQ 182
            T+ ++LMFFMRDLY+AYDGTVR++ GN L QFSY +   S+  +  N +      YD   
Sbjct: 829  TLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINED---TCAYD--M 883

Query: 181  SGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSKR 2
             G PVGS +AC+ISEAAYSALDQPIS LE SPLLNLK +LE   +K+  ++T SLFLSK+
Sbjct: 884  GGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKK 943


>ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1 [Cucumis melo]
          Length = 1489

 Score =  521 bits (1343), Expect = e-145
 Identities = 284/541 (52%), Positives = 367/541 (67%), Gaps = 12/541 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV++LP+ +V+SLNP+CCSP RGDFDGDCLHGY+PQS+ ++VE+RELVS+DRQL+NGQ
Sbjct: 454  ALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQ 513

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA L+ E  V L+ FQMQQ+ ML                  QLL P
Sbjct: 514  SGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQML---------------TLHQLLPP 558

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI K+   +N  WTGKQLFS+L PPDF+Y SPS+ ++I KGE+I SS  S WL+D+  N+
Sbjct: 559  AIVKSPLLRNCAWTGKQLFSILLPPDFEYSSPSHNVFIEKGELI-SSEGSYWLRDSGRNL 617

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  LI+    K  D L  A+ VL EW+S+RGLSVSLSDLYL  +SYS   M++++  GL 
Sbjct: 618  FQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQ 677

Query: 868  EAEQKFHTKEFMVD---HAMVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVF 701
            EAE+  + K+ MVD     +  +DED+     +        K K   LNQ S+ AFK+VF
Sbjct: 678  EAEETCNLKQLMVDSHKEILTGNDEDNQHLLSIAVEHLIYEKQKSAALNQASVDAFKKVF 737

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCK----- 536
            RD+Q+ V  Y+  DNSLL M +AGSKGN++KL+Q  + LGLQHS + LSFS+P K     
Sbjct: 738  RDIQNLVHKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCSA 797

Query: 535  ---SKFKSDYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVP 365
                K     +    P  + + +PYAVVE+SFL GL+P ECF HSV++R  SF+DNAEVP
Sbjct: 798  WNSQKMPRYIQEDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 857

Query: 364  GTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSV 185
            GT+ +KL F MRD+Y AYDGTVR++ GN L QF Y + + +SV + S+     E+  D  
Sbjct: 858  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSVSSESDS----ENNRDRD 913

Query: 184  QSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSK 5
              G PVGS AAC+ SEAAYSALDQPIS LE+SPLLNLK +LE   K+ +  QT SLFLS+
Sbjct: 914  IGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSE 973

Query: 4    R 2
            +
Sbjct: 974  K 974


>ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
            [Cucumis sativus]
          Length = 1361

 Score =  520 bits (1339), Expect = e-144
 Identities = 283/541 (52%), Positives = 365/541 (67%), Gaps = 12/541 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV++LP+ +V+SLNP+CCSP RGDFDGDCLHGY+PQS+ ++VE+RELVS+D+QL NGQ
Sbjct: 328  ALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQ 387

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA L+ E  V L+ FQMQQ+ ML                  QLL P
Sbjct: 388  SGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQML---------------TLHQLLPP 432

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI K+   +N  WTGKQLFS+L PPDFDY SPS+ ++I KGE+I SS  S WL+D+  N+
Sbjct: 433  AIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELI-SSEGSYWLRDSGRNL 491

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  LI+    K  D L  A+ VL EW+S RGLSVSLSDLYL  +SYS   M++++  GL 
Sbjct: 492  FQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQ 551

Query: 868  EAEQKFHTKEFMVD---HAMVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVF 701
            EAE+  + K+ MVD     ++ +DED+     +   +    K K   LNQ S+ AFK+VF
Sbjct: 552  EAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVF 611

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCK----- 536
            RD+Q+ V  Y+  DNSLL M +AGSKGN++KL+Q  + LGLQHS + LSFS+P K     
Sbjct: 612  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAA 671

Query: 535  ---SKFKSDYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVP 365
                K     +    P  + + +PYAVVE+SFL GL+P ECF HSV++R  SF+DNAEVP
Sbjct: 672  WNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 731

Query: 364  GTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSV 185
            GT+ +KL F MRD+Y AYDGTVR++ GN L QF Y + + +S   + N      +  D  
Sbjct: 732  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESEN------NNRDRG 785

Query: 184  QSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSK 5
              G PVGS AAC+ISEAAYSALDQPIS LE+SPLLNLK +LE   K+ +  QT SLFLS+
Sbjct: 786  IGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSE 845

Query: 4    R 2
            +
Sbjct: 846  K 846


>ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Cucumis sativus]
          Length = 1362

 Score =  520 bits (1339), Expect = e-144
 Identities = 283/541 (52%), Positives = 365/541 (67%), Gaps = 12/541 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV++LP+ +V+SLNP+CCSP RGDFDGDCLHGY+PQS+ ++VE+RELVS+D+QL NGQ
Sbjct: 329  ALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQ 388

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA L+ E  V L+ FQMQQ+ ML                  QLL P
Sbjct: 389  SGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQML---------------TLHQLLPP 433

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI K+   +N  WTGKQLFS+L PPDFDY SPS+ ++I KGE+I SS  S WL+D+  N+
Sbjct: 434  AIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELI-SSEGSYWLRDSGRNL 492

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  LI+    K  D L  A+ VL EW+S RGLSVSLSDLYL  +SYS   M++++  GL 
Sbjct: 493  FQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQ 552

Query: 868  EAEQKFHTKEFMVD---HAMVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVF 701
            EAE+  + K+ MVD     ++ +DED+     +   +    K K   LNQ S+ AFK+VF
Sbjct: 553  EAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVF 612

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCK----- 536
            RD+Q+ V  Y+  DNSLL M +AGSKGN++KL+Q  + LGLQHS + LSFS+P K     
Sbjct: 613  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAA 672

Query: 535  ---SKFKSDYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVP 365
                K     +    P  + + +PYAVVE+SFL GL+P ECF HSV++R  SF+DNAEVP
Sbjct: 673  WNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 732

Query: 364  GTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSV 185
            GT+ +KL F MRD+Y AYDGTVR++ GN L QF Y + + +S   + N      +  D  
Sbjct: 733  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESEN------NNRDRG 786

Query: 184  QSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSK 5
              G PVGS AAC+ISEAAYSALDQPIS LE+SPLLNLK +LE   K+ +  QT SLFLS+
Sbjct: 787  IGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSE 846

Query: 4    R 2
            +
Sbjct: 847  K 847


>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Cucumis sativus] gi|778675671|ref|XP_011650448.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Cucumis sativus]
            gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
            gi|700200830|gb|KGN55963.1| hypothetical protein
            Csa_3G039340 [Cucumis sativus]
          Length = 1483

 Score =  520 bits (1339), Expect = e-144
 Identities = 283/541 (52%), Positives = 365/541 (67%), Gaps = 12/541 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV++LP+ +V+SLNP+CCSP RGDFDGDCLHGY+PQS+ ++VE+RELVS+D+QL NGQ
Sbjct: 450  ALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQ 509

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA L+ E  V L+ FQMQQ+ ML                  QLL P
Sbjct: 510  SGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQML---------------TLHQLLPP 554

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI K+   +N  WTGKQLFS+L PPDFDY SPS+ ++I KGE+I SS  S WL+D+  N+
Sbjct: 555  AIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELI-SSEGSYWLRDSGRNL 613

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  LI+    K  D L  A+ VL EW+S RGLSVSLSDLYL  +SYS   M++++  GL 
Sbjct: 614  FQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQ 673

Query: 868  EAEQKFHTKEFMVD---HAMVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVF 701
            EAE+  + K+ MVD     ++ +DED+     +   +    K K   LNQ S+ AFK+VF
Sbjct: 674  EAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVF 733

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCK----- 536
            RD+Q+ V  Y+  DNSLL M +AGSKGN++KL+Q  + LGLQHS + LSFS+P K     
Sbjct: 734  RDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAA 793

Query: 535  ---SKFKSDYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVP 365
                K     +    P  + + +PYAVVE+SFL GL+P ECF HSV++R  SF+DNAEVP
Sbjct: 794  WNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVP 853

Query: 364  GTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSV 185
            GT+ +KL F MRD+Y AYDGTVR++ GN L QF Y + + +S   + N      +  D  
Sbjct: 854  GTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESEN------NNRDRG 907

Query: 184  QSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSK 5
              G PVGS AAC+ISEAAYSALDQPIS LE+SPLLNLK +LE   K+ +  QT SLFLS+
Sbjct: 908  IGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSE 967

Query: 4    R 2
            +
Sbjct: 968  K 968


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  519 bits (1337), Expect = e-144
 Identities = 283/543 (52%), Positives = 369/543 (67%), Gaps = 14/543 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+ CSP RGDFDGDCLHGY+PQSI ++VEL ELVS++RQL+NGQ
Sbjct: 438  ALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKARVELIELVSLNRQLINGQ 497

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA+L++E  V L+ FQMQQ+ M                       P
Sbjct: 498  SGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPF---------------P 542

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA   ++ VWTGKQL SMLFP +FDY    N + I  GE+I SS  S+WL+D D N+
Sbjct: 543  AIVKAPLLRSSVWTGKQLLSMLFPLEFDYDFTPNDVVIRNGELISSSEGSTWLRDADGNL 602

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  LIK Y  K  D L +A+ VL EW+S+RGLSVSLSDLYL S+S S+  M++E+  GL 
Sbjct: 603  FQSLIKHYQGKVLDFLYAAQEVLCEWLSMRGLSVSLSDLYLSSDSNSQKNMMDEIFCGLQ 662

Query: 868  EAEQKFHTKEFMVD---HAMVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVF 701
            E EQ  + K+ MVD     +V  DE+   F  L+  Q    K +   L+Q S+ +FK+VF
Sbjct: 663  EIEQTCNFKQLMVDSNHDFLVGHDEEVDSFMALDVEQMCYEKQRSAALSQASVDSFKQVF 722

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIP----CKS 533
            RD+Q+ +  Y + DNSLL M +AGSKGN+LKL+Q  + LGLQHS +PLSF  P    C +
Sbjct: 723  RDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRFPHQLSCAA 782

Query: 532  KFKSDYEAI-----DTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEV 368
                    +     DT +S+ N +PYAVVESSF+ GL+P+E F+HSV+SR  SF+DNA++
Sbjct: 783  WNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNPLESFVHSVTSRDSSFSDNADL 842

Query: 367  PGTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVE-STYD 191
            PGT+ ++LMFFMRDLY AYDGTVR+S G+ + QF Y + K++S   +  H L  E ST  
Sbjct: 843  PGTLSRRLMFFMRDLYTAYDGTVRNSYGDLVVQFCYDIDKDASSPTSCAHGLISESSTIP 902

Query: 190  SVQSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFL 11
                G PVGS +AC+ISEAAYSALDQP+S LE+SPLLNLK ++E   K++  +QT +LFL
Sbjct: 903  EGIGGQPVGSLSACAISEAAYSALDQPVSLLETSPLLNLKRVVECGSKRSNADQTMTLFL 962

Query: 10   SKR 2
            S +
Sbjct: 963  SNK 965


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  512 bits (1318), Expect = e-142
 Identities = 281/520 (54%), Positives = 362/520 (69%), Gaps = 11/520 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSV+VLP+ SVVS+NP+CCSP RGDFDGDCLHGYIPQS++S+VEL ELV+++RQL+N Q
Sbjct: 427  ALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQ 486

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS   DSL+AA L+ E  V L+ FQMQQ+ M                   QL +P
Sbjct: 487  SGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPY---------------QLQSP 531

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA      VWTGKQLFSML PP F+Y+ P NG+ IS GE+I SS  S+WL+D D N+
Sbjct: 532  AIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNL 591

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            FS L+K    KA D L +A+ VL EW+S+RGLSVSLSD+YL S+S SR  M++EV  GL 
Sbjct: 592  FSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLL 651

Query: 868  EAEQKFHTKEFMVDHA---MVRDDEDDLDFKVLEAGQTSLSKK-VTVLNQLSLGAFKEVF 701
             AEQ  H K+ +VD +   ++   E++ +  V +       ++    L Q S+ AFK+ F
Sbjct: 652  VAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKF 711

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIP----CKS 533
            RD+Q+ V  Y + DNSLLAM +AGSKGN+LKL+QQG+ LGLQHS +PLSF IP    C +
Sbjct: 712  RDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAA 771

Query: 532  KFKSDYEAI---DTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVPG 362
              K     +   DT + +++ +PYAVVE+SFL GL+P+ECF+HSV+SR  SF+DNA++PG
Sbjct: 772  WNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPG 831

Query: 361  TIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSVQ 182
            T+ ++LMFFMRDLY+AYDGTVR++ GN L QFSY +   S+  +  N +      YD   
Sbjct: 832  TLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINED---TCAYD--M 886

Query: 181  SGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLL 62
             G PVGS +AC+ISEAAYSALDQPIS LE SPLLNLKN L
Sbjct: 887  GGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKNHL 926


>ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324654|ref|XP_010053344.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324662|ref|XP_010053345.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324668|ref|XP_010053346.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324674|ref|XP_010053347.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324680|ref|XP_010053348.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324687|ref|XP_010053349.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|629112658|gb|KCW77618.1| hypothetical protein
            EUGRSUZ_D01929 [Eucalyptus grandis]
          Length = 1473

 Score =  508 bits (1309), Expect = e-141
 Identities = 277/540 (51%), Positives = 371/540 (68%), Gaps = 11/540 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALS +VLP+ S +S+NP+CCSPLRGDFDGDC+HGYIPQS++++VELRELV VDRQL NGQ
Sbjct: 434  ALSAKVLPIASALSINPLCCSPLRGDFDGDCIHGYIPQSVDARVELRELVGVDRQLYNGQ 493

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS   DSL AA L+ E SV  ++F +QQ+ ML                   LL P
Sbjct: 494  SGRNLLSLGQDSLVAAHLILEDSVCFNRFDIQQLKML---------------CPNDLLPP 538

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
              S   G    +WTGKQLF ML P  F++ S SN I IS GEI++S   S+WL+D DDN+
Sbjct: 539  VPSVEGG----MWTGKQLFQMLLPRGFEWFSSSNDIGISNGEIVFSE-GSAWLRDADDNL 593

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F RLI     +  +IL +A+ VL EW+S+RG SVSLSDLYL S+S+SR  M+EE+  GL 
Sbjct: 594  FQRLITFCQSRVLNILHAAQEVLCEWLSMRGFSVSLSDLYLASDSFSRENMIEEISCGLQ 653

Query: 868  EAEQKFHTKEFMVDHA--MVRDDEDDLDFKVLEAGQTSLSK-KVTVLNQLSLGAFKEVFR 698
            EA++  + K+FMVD +   +  + ++++     + +    K K   L+Q S+ AFK VFR
Sbjct: 654  EADETCNIKQFMVDSSRDFLAGNGEEINAMAFNSERLCYEKQKSPALSQASVDAFKRVFR 713

Query: 697  DLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIP--CKSKFK 524
            D+QS    Y S DNS+++M ++GSKGN+LK+ Q  + +GLQHS +PLSF IP    +   
Sbjct: 714  DIQSLAYKYASKDNSMISMFKSGSKGNLLKIAQHSMCVGLQHSLVPLSFDIPHHLSNASY 773

Query: 523  SDYEAIDTPQSSD-----NNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVPGT 359
            + ++  +  ++ D     + +P+AVV++SFL GL+P+ECF+HSV++R+ SF++NAEVPGT
Sbjct: 774  NSHKGRNIDRTHDFPFPQSFIPFAVVKNSFLSGLNPLECFVHSVTNRASSFSENAEVPGT 833

Query: 358  IFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSV-Q 182
            + +KLMFFMRDLYV+YDGTVRS+ GN L +FSYG+ K+SS   +    L  E+       
Sbjct: 834  LHRKLMFFMRDLYVSYDGTVRSAYGNQLIEFSYGIEKQSSTPCSRKDSLSCENAKSGEGM 893

Query: 181  SGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSKR 2
             G PVGS +AC+ISEAAYSALDQPIS LE SPLLNLKN+LES  KK+   QT SLFLSK+
Sbjct: 894  GGQPVGSMSACAISEAAYSALDQPISLLEMSPLLNLKNVLESGTKKSNSCQTMSLFLSKQ 953


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  508 bits (1308), Expect = e-141
 Identities = 277/544 (50%), Positives = 372/544 (68%), Gaps = 15/544 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSVR+LP+ SV+S+NP+ CSP RGDFDGDCLHGYIPQSI+S++EL ELV++ +QL++GQ
Sbjct: 197  ALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALKQQLLDGQ 256

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            NG+NLLS  HDSLTAA L+ E  VFLD+FQMQQ+ M                  RQL   
Sbjct: 257  NGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMF---------------CPRQLGMT 301

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA       WTGKQLFS+L P D +Y+ PSNG+ IS+GEI+ SS  SSWL+D  DN+
Sbjct: 302  AIVKAPPGNLCYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDVSDNL 361

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  L+K +G    D+L +A+ VL EW+S+RGLSVSLSDLY+ S+SYSR  M++EVC GL 
Sbjct: 362  FYSLVKHHGGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISSDSYSRENMIDEVCSGLQ 421

Query: 868  EAEQKFHTKEFMVDH------AMVRDDEDDLDFKVLEAGQTSLSKKVTVLNQLSLGAFKE 707
            EAE+  + +  M+ +        + + ++ + F       + + +K   L+Q S  AFK+
Sbjct: 422  EAERLSYIQLLMIKYNKDFLSGSLEESKNSMGFDF--EFMSIMQQKSASLSQASASAFKK 479

Query: 706  VFRDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCK--- 536
            VFRD+Q+ V +Y SNDNSLLAM +AGSKGN+LKL+Q  + LGLQ S +P+SF +P +   
Sbjct: 480  VFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSC 539

Query: 535  ---SKFKSDY---EAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNA 374
               +  KS     +    P+   + +P AVV+SSFL GL+P+ECF+HS+++R  SF+ +A
Sbjct: 540  DAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHA 599

Query: 373  EVPGTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTY 194
            +V GT+ +KLMFFMRDLYV YDGTVR++ GN + QFSY   ++ +    +   L    ++
Sbjct: 600  DVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIASTKGTGDAL---ESH 656

Query: 193  DSVQSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLF 14
            +    G PVGS AAC+ISEAAYSALDQP+S LESSPLLNLK +LES     +  +TAS+F
Sbjct: 657  NHAIGGHPVGSLAACAISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMF 716

Query: 13   LSKR 2
            LSKR
Sbjct: 717  LSKR 720


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  508 bits (1308), Expect = e-141
 Identities = 277/544 (50%), Positives = 372/544 (68%), Gaps = 15/544 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            ALSVR+LP+ SV+S+NP+ CSP RGDFDGDCLHGYIPQSI+S++EL ELV++ +QL++GQ
Sbjct: 410  ALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALKQQLLDGQ 469

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            NG+NLLS  HDSLTAA L+ E  VFLD+FQMQQ+ M                  RQL   
Sbjct: 470  NGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMF---------------CPRQLGMT 514

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA       WTGKQLFS+L P D +Y+ PSNG+ IS+GEI+ SS  SSWL+D  DN+
Sbjct: 515  AIVKAPPGNLCYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDVSDNL 574

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  L+K +G    D+L +A+ VL EW+S+RGLSVSLSDLY+ S+SYSR  M++EVC GL 
Sbjct: 575  FYSLVKHHGGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISSDSYSRENMIDEVCSGLQ 634

Query: 868  EAEQKFHTKEFMVDH------AMVRDDEDDLDFKVLEAGQTSLSKKVTVLNQLSLGAFKE 707
            EAE+  + +  M+ +        + + ++ + F       + + +K   L+Q S  AFK+
Sbjct: 635  EAERLSYIQLLMIKYNKDFLSGSLEESKNSMGFDF--EFMSIMQQKSASLSQASASAFKK 692

Query: 706  VFRDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCK--- 536
            VFRD+Q+ V +Y SNDNSLLAM +AGSKGN+LKL+Q  + LGLQ S +P+SF +P +   
Sbjct: 693  VFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSC 752

Query: 535  ---SKFKSDY---EAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNA 374
               +  KS     +    P+   + +P AVV+SSFL GL+P+ECF+HS+++R  SF+ +A
Sbjct: 753  DAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHA 812

Query: 373  EVPGTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTY 194
            +V GT+ +KLMFFMRDLYV YDGTVR++ GN + QFSY   ++ +    +   L    ++
Sbjct: 813  DVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIASTKGTGDAL---ESH 869

Query: 193  DSVQSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLF 14
            +    G PVGS AAC+ISEAAYSALDQP+S LESSPLLNLK +LES     +  +TAS+F
Sbjct: 870  NHAIGGHPVGSLAACAISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMF 929

Query: 13   LSKR 2
            LSKR
Sbjct: 930  LSKR 933


>emb|CDP09818.1| unnamed protein product [Coffea canephora]
          Length = 1511

 Score =  506 bits (1304), Expect = e-140
 Identities = 281/544 (51%), Positives = 370/544 (68%), Gaps = 15/544 (2%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            +LSVR+LP+ SV+S+NP+ CSPLRGDFDGDCLHGY+ QS++S+VEL ELV++++QL+NGQ
Sbjct: 464  SLSVRILPINSVLSINPLICSPLRGDFDGDCLHGYVSQSVDSRVELNELVALNKQLLNGQ 523

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS  HDSLTAA L+ E  V LDKFQMQQ+ M  S    I               P
Sbjct: 524  SGRNLLSLSHDSLTAAHLILEDGVTLDKFQMQQLQMFCSCPMPI---------------P 568

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI+KA G +   WTGKQLFS+L PP FDY+S SNG+ ISKGEI+ SS  SSWL+D D N+
Sbjct: 569  AITKAPGNK-CFWTGKQLFSLLIPPCFDYVSQSNGVQISKGEIVTSSSGSSWLRDNDGNL 627

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  L++C   +    L +A+ VL EW+++RGLSVSLSDLYL S++YSR  M+EEV  GL 
Sbjct: 628  FHSLVRCCKNEVLGFLCAAQEVLCEWLAMRGLSVSLSDLYLTSDAYSRQNMIEEVSCGLQ 687

Query: 868  EAE--------QKFHTKEFMVDHAMVRDDEDDLDFKVLEAGQTSLSKKVTVLNQLSLGAF 713
            EAE             ++F+V+         D   + L + Q   S   +VL++ S+ AF
Sbjct: 688  EAELLSSIRLLMMGSNQDFLVESTEANKRSVDFGEQHLSSIQQQNS---SVLSEASVSAF 744

Query: 712  KEVFRDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCKS 533
            K+VF D+Q  V HY S DNS L+M  AGSKGN+LKL+Q  + LGLQHS +PLSFSIP + 
Sbjct: 745  KQVFLDVQHLVYHYVSKDNSFLSMLMAGSKGNLLKLVQHSMCLGLQHSVVPLSFSIPHQL 804

Query: 532  KFK-------SDYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNA 374
                      S +E+  T   S + +P+AV+E+SFL GL+P+ECF+HS+++R  SF+ +A
Sbjct: 805  SCATWNYHKISVHESHGTLDHSGSYIPFAVIENSFLTGLNPMECFVHSLTTRDSSFSGHA 864

Query: 373  EVPGTIFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTY 194
            +V GT+ +KLMFFMRDL + YDGTVR+S GN L QFSY   +++    N N E   E+  
Sbjct: 865  DVSGTLTRKLMFFMRDLSIGYDGTVRNSYGNQLIQFSYN-SRDTLTPCNCNDESPSETIS 923

Query: 193  DSVQSGDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLF 14
                 G PVG+ AAC+ISEAAYSALD PIS LESSPLLNLK +L+   KK++ ++TAS+F
Sbjct: 924  AYDVGGHPVGALAACAISEAAYSALDLPISALESSPLLNLKKILDCGVKKSSGDKTASIF 983

Query: 13   LSKR 2
            L K+
Sbjct: 984  LCKK 987


>ref|XP_012574547.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Cicer
            arietinum]
          Length = 1343

 Score =  506 bits (1302), Expect = e-140
 Identities = 270/539 (50%), Positives = 368/539 (68%), Gaps = 10/539 (1%)
 Frame = -1

Query: 1588 ALSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQ 1409
            AL+VRVLP+ SVVS+NP+CCSPLRGDFDGDCLHGYIPQS+ ++VEL ELV++D+QL+NGQ
Sbjct: 299  ALTVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDKQLINGQ 358

Query: 1408 NGRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQREDIFDASVFEQVQRQLLNP 1229
            +GRNLLS   DSLTAA+LL E  V L+ +QMQQ+ M  S               R+L+ P
Sbjct: 359  SGRNLLSLSQDSLTAAYLLLEDGVLLNVYQMQQLQMHCS---------------RKLIPP 403

Query: 1228 AISKATGQQNPVWTGKQLFSMLFPPDFDYISPSNGIYISKGEIIYSSLESSWLQDTDDNI 1049
            AI KA       W+GKQLFSML P  FDY  PS+G+++  GE+I  S  S WL+D+D+N+
Sbjct: 404  AIVKAPSSNTSCWSGKQLFSMLMPSSFDYAFPSDGVFVCDGELISCSEASGWLRDSDNNV 463

Query: 1048 FSRLIKCYGCKANDILLSAERVLLEWMSVRGLSVSLSDLYLCSNSYSRNKMLEEVCYGLH 869
            F  L++ +  K  DIL  A++ L EW+S+ G SVSLSDLYL S+SY+R  M+EE+ YGL 
Sbjct: 464  FQSLVEHFQGKTLDILHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEISYGLQ 523

Query: 868  EAEQKFHTKEFMVDHA---MVRDDEDDLDFKVLEAGQTSLSKKVT-VLNQLSLGAFKEVF 701
            EAEQ     + +VD+    +    ++  +   ++    +  ++++  L+Q S+ AF++VF
Sbjct: 524  EAEQACDFNQLLVDYCCDFLSGSLQEIENLVAVDVDCLNYERQISAALSQASVDAFRQVF 583

Query: 700  RDLQSTVLHYTSNDNSLLAMARAGSKGNILKLIQQGVALGLQHSSIPLSFSIPCK----- 536
            R++QS    Y   DN+ LAM +AGSKGN+LKL+Q  + LGLQHS + L + IP K     
Sbjct: 584  RNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLPYKIPRKLSCAA 643

Query: 535  -SKFKSDYEAIDTPQSSDNNVPYAVVESSFLKGLDPVECFMHSVSSRSVSFADNAEVPGT 359
             +  K      DT +   + +PYAVVESSFL GL+P+ECF+HSV++R  SF+DNA++PGT
Sbjct: 644  WNSQKGMQIFSDTVEPVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGT 703

Query: 358  IFKKLMFFMRDLYVAYDGTVRSSNGNHLYQFSYGVPKESSVQNNSNHELFVESTYDSVQS 179
            + ++LMFFMRD+Y AYDGTVR+  GN L QFSY   ++SS  ++     F E T      
Sbjct: 704  LTRRLMFFMRDMYDAYDGTVRNLYGNQLIQFSYDAEEDSSCDSH-----FREDTI----G 754

Query: 178  GDPVGSSAACSISEAAYSALDQPISTLESSPLLNLKNLLESSQKKTAVNQTASLFLSKR 2
            G+PVG+ +AC++SEAAYSAL QPIS LE+SPLLNLK +LE   +K   +QT SLFLS++
Sbjct: 755  GEPVGTLSACAVSEAAYSALSQPISLLEASPLLNLKYVLECGSRKRGGDQTVSLFLSEK 813