BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00018168
         (2560 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B, c...  1033   0.0  
ref|XP_010261422.1| PREDICTED: DNA-directed RNA polymerase 2B, c...  1006   0.0  
ref|XP_010261414.1| PREDICTED: DNA-directed RNA polymerase 2B, c...  1006   0.0  
ref|XP_008783046.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   981   0.0  
ref|XP_010929072.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   979   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   978   0.0  
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...   973   0.0  
ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   971   0.0  
ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   971   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   969   0.0  
ref|XP_008788965.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   959   0.0  
ref|XP_009378288.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   958   0.0  
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   955   0.0  
ref|XP_012491228.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   953   0.0  
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   951   0.0  
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   951   0.0  
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   951   0.0  
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   951   0.0  
gb|KDO72326.1| hypothetical protein CISIN_1g036741mg [Citrus sin...   951   0.0  
ref|XP_010943346.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   948   0.0  

>ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like [Nelumbo nucifera]
          Length = 1031

 Score = 1033 bits (2671), Expect = 0.0
 Identities = 530/812 (65%), Positives = 626/812 (77%), Gaps = 33/812 (4%)
 Frame = -3

Query: 2339 MLSSKFAISPTNLNRNFDFSISIERPRETV-NSKPKGVNMWRNVAKQLASSR-KIGR--- 2175
            M S+   IS TNL+  F + I +++      NS      MWR++A++ + ++ ++ R   
Sbjct: 1    MSSNATLISSTNLSNKFVYLIQVDKATFCPPNSSRISTAMWRHIARRASLTKVRLSRDSS 60

Query: 2174 ----------FSKKTVFEGKIKSSELTKPENFGYLAVGCRQIMTSHDIMGSKSLMGLR-M 2028
                      FS+ ++     +  EL    +F +     R  + + ++   +  +G   +
Sbjct: 61   SILRTFGFMGFSQDSILNDTTRPFELKSSMSFRFSE---RSFLRNGELPSKEDELGRPIL 117

Query: 2027 DCWRS-------------YXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDEKGGAIKI 1887
             C+R+             Y                    EIQ LL+EM KE++K   ++ 
Sbjct: 118  GCFRNPISPPRLSNHPKGYASVAEAVCSMDAEEDLSAIDEIQELLEEMGKEEKKELELRD 177

Query: 1886 MSEGRRLAGITRGRKY---KEQVRLETEAWDNAAKEYKELLADMCEQKLAPNLPYMKSLF 1716
              + + + G+ +G+     + QV++ETEAW+ AAKEY+ELL DMCEQKLAPNLPYMKSLF
Sbjct: 178  QKQIKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYRELLMDMCEQKLAPNLPYMKSLF 237

Query: 1715 LGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLMTGGEHGNA 1536
            LGWFEPLR+ IVAEQEL R+GKNR AYAPY DQLPA+M ++ITMHKLM LLMTGGEHG+ 
Sbjct: 238  LGWFEPLRDCIVAEQELCRKGKNRTAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGSC 297

Query: 1535 RVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGGESDAVAKENEKLRKKVTILMK 1356
            RVVQAACQIGEAIE EVRIH+FLE           A+GGESD V KE ++LRKKVT LMK
Sbjct: 298  RVVQAACQIGEAIENEVRIHKFLEKTRKKTDKDKKADGGESDPVIKEQQRLRKKVTDLMK 357

Query: 1355 KQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSAEGPPDIRPAF 1176
            KQKLQQVR+IVKGQDD KPWGQDAQAK+GSRLIELLM+TAYIQPPV+Q A+GPPDIRPAF
Sbjct: 358  KQKLQQVRQIVKGQDDSKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQLADGPPDIRPAF 417

Query: 1175 RHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPKRWSGYDKGGY 996
            RHSLKTV+K+ QK+SRRYGVIECDPLVR+GLE+TARH           P  W+GYDKG Y
Sbjct: 418  RHSLKTVTKEAQKTSRRYGVIECDPLVRKGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 477

Query: 995  LFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVLSVIDKLWASG 816
            LFLPSY+MRTHG++QQREAVK A   QLEPVFEAL+TLGNT+WR N RVLSV+D++WASG
Sbjct: 478  LFLPSYVMRTHGARQQREAVKRAPRKQLEPVFEALDTLGNTKWRVNKRVLSVVDRIWASG 537

Query: 815  GRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDIELKLAVARKM 636
            GRLA LVDR+DVP+P EPDT+DE E   W+WK+KAAKKENSERHSQRCDIELKLAVAR+M
Sbjct: 538  GRLADLVDREDVPIPEEPDTEDEAEIKKWKWKVKAAKKENSERHSQRCDIELKLAVARRM 597

Query: 635  KDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANL 456
            KDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL+WLKIHLANL
Sbjct: 598  KDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHLANL 657

Query: 455  YAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAACINLSEALRS 276
            YAGGVDKLSY+GRI+F ENH+D+IFDSAD+PLEGRRWWL AEDPFQCLAACINLSEALRS
Sbjct: 658  YAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLNAEDPFQCLAACINLSEALRS 717

Query: 275  SSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYSGIAARVLEIM 96
            SSPET ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV G+KPADVYSGIAARVL+IM
Sbjct: 718  SSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIM 777

Query: 95   QNDAKKDP-SDPEAFRARLLVNHVDRKLVKQT 3
            + DA+KDP + P A  AR+L+N VDRKLVKQT
Sbjct: 778  RRDAEKDPETHPNAMHARILINQVDRKLVKQT 809


>ref|XP_010261422.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like isoform X2 [Nelumbo
            nucifera]
          Length = 942

 Score = 1006 bits (2600), Expect = 0.0
 Identities = 511/772 (66%), Positives = 594/772 (76%), Gaps = 31/772 (4%)
 Frame = -3

Query: 2225 MWRNVAKQLASSRKIGR-------------FSKKTVFEGKIKSSELTKPENFGYLAVGCR 2085
            MWRN+ KQ  S+    R             +S+  VF  K +  E     N G+ +  C 
Sbjct: 1    MWRNIVKQACSTNFFSRDSSSMLRTFGVVGYSQYPVFHDKARQFEFKSSINAGF-SESC- 58

Query: 2084 QIMTSHDIMGSKSLMG-LRMDCWRS-------------YXXXXXXXXXXXXXXXXXXXXE 1947
              + + +    +  +G L   C+R+             Y                    E
Sbjct: 59   -FLRNGESPSKEDDLGILSFGCFRNSMGLSRFSNHPKGYASVAEVLSSTDAEEDVSVVDE 117

Query: 1946 IQGLLKEMSKEDEKGGAIKIMSEGRRLAGITRGRKY---KEQVRLETEAWDNAAKEYKEL 1776
            IQ LL+EMSKE EK        + + + G+ +G+     + QV++ETEAW+ AAKEYKEL
Sbjct: 118  IQELLEEMSKE-EKELEFSHQKQTKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYKEL 176

Query: 1775 LADMCEQKLAPNLPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTA 1596
            L DMCEQKLAPNLPYMKSLFLGWFEPLR+ I AEQEL R+GKNR AYAPY DQLPA+M +
Sbjct: 177  LMDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAAEQELCRKGKNRAAYAPYFDQLPAEMMS 236

Query: 1595 LITMHKLMALLMTGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGGE 1416
            +ITMHKL+ LLMTGGEHG+ARVVQAAC IG+AIE EVRI++FLE           AEGGE
Sbjct: 237  VITMHKLVGLLMTGGEHGSARVVQAACLIGQAIENEVRIYKFLEKTKKKTDKDKKAEGGE 296

Query: 1415 SDAVAKENEKLRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETA 1236
            SD   KE ++LRKKVT LMKKQKLQQVR+IVK QDD KPWGQDAQAK+GS LIELLM+TA
Sbjct: 297  SDPAIKEQQRLRKKVTDLMKKQKLQQVRQIVKSQDDSKPWGQDAQAKVGSHLIELLMQTA 356

Query: 1235 YIQPPVNQSAEGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXX 1056
            YIQ P +Q A+GPPDIRPAFRH+LKT++K++QK+SRRYG+IECDPLVR+GLE+TARH   
Sbjct: 357  YIQSPADQLADGPPDIRPAFRHTLKTITKESQKTSRRYGLIECDPLVRKGLERTARHMVI 416

Query: 1055 XXXXXXXXPKRWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGN 876
                    P  W+GYDKG YLFLPSY+MRTHG++QQREAVK  S  QLEP+FEAL+TLGN
Sbjct: 417  PYMPMLVPPLNWTGYDKGAYLFLPSYVMRTHGARQQREAVKRTSRKQLEPIFEALDTLGN 476

Query: 875  TRWRANWRVLSVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKEN 696
            T+WR N RVL V+D++WASGGRLA LVDR+DVPLP EP+T+DE E   W+WK+KA KKEN
Sbjct: 477  TKWRINKRVLGVVDRIWASGGRLADLVDREDVPLPEEPETEDEAELKKWKWKVKAVKKEN 536

Query: 695  SERHSQRCDIELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 516
            SERHSQRCD ELKLAVAR+MKDENGF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA
Sbjct: 537  SERHSQRCDTELKLAVARRMKDENGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 596

Query: 515  EGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLG 336
            EGRPLGKSGLRWLKIHLANLYAGGVDKLSY+GRI+F ENH+D+IFDSAD+PLEGRRWWL 
Sbjct: 597  EGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLN 656

Query: 335  AEDPFQCLAACINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 156
            A+DPFQCLA CINLSEALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLV
Sbjct: 657  ADDPFQCLAVCINLSEALRSCSPETMISHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLV 716

Query: 155  NGDKPADVYSGIAARVLEIMQNDAKKDP-SDPEAFRARLLVNHVDRKLVKQT 3
             GDKPADVYSG+AARVL+IM+ DA+KDP ++P A  ARLL+N VDRKLVKQT
Sbjct: 717  AGDKPADVYSGVAARVLDIMRRDAQKDPTTEPNAMHARLLINQVDRKLVKQT 768


>ref|XP_010261414.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like isoform X1 [Nelumbo
            nucifera]
          Length = 990

 Score = 1006 bits (2600), Expect = 0.0
 Identities = 511/772 (66%), Positives = 594/772 (76%), Gaps = 31/772 (4%)
 Frame = -3

Query: 2225 MWRNVAKQLASSRKIGR-------------FSKKTVFEGKIKSSELTKPENFGYLAVGCR 2085
            MWRN+ KQ  S+    R             +S+  VF  K +  E     N G+ +  C 
Sbjct: 1    MWRNIVKQACSTNFFSRDSSSMLRTFGVVGYSQYPVFHDKARQFEFKSSINAGF-SESC- 58

Query: 2084 QIMTSHDIMGSKSLMG-LRMDCWRS-------------YXXXXXXXXXXXXXXXXXXXXE 1947
              + + +    +  +G L   C+R+             Y                    E
Sbjct: 59   -FLRNGESPSKEDDLGILSFGCFRNSMGLSRFSNHPKGYASVAEVLSSTDAEEDVSVVDE 117

Query: 1946 IQGLLKEMSKEDEKGGAIKIMSEGRRLAGITRGRKY---KEQVRLETEAWDNAAKEYKEL 1776
            IQ LL+EMSKE EK        + + + G+ +G+     + QV++ETEAW+ AAKEYKEL
Sbjct: 118  IQELLEEMSKE-EKELEFSHQKQTKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYKEL 176

Query: 1775 LADMCEQKLAPNLPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTA 1596
            L DMCEQKLAPNLPYMKSLFLGWFEPLR+ I AEQEL R+GKNR AYAPY DQLPA+M +
Sbjct: 177  LMDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAAEQELCRKGKNRAAYAPYFDQLPAEMMS 236

Query: 1595 LITMHKLMALLMTGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGGE 1416
            +ITMHKL+ LLMTGGEHG+ARVVQAAC IG+AIE EVRI++FLE           AEGGE
Sbjct: 237  VITMHKLVGLLMTGGEHGSARVVQAACLIGQAIENEVRIYKFLEKTKKKTDKDKKAEGGE 296

Query: 1415 SDAVAKENEKLRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETA 1236
            SD   KE ++LRKKVT LMKKQKLQQVR+IVK QDD KPWGQDAQAK+GS LIELLM+TA
Sbjct: 297  SDPAIKEQQRLRKKVTDLMKKQKLQQVRQIVKSQDDSKPWGQDAQAKVGSHLIELLMQTA 356

Query: 1235 YIQPPVNQSAEGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXX 1056
            YIQ P +Q A+GPPDIRPAFRH+LKT++K++QK+SRRYG+IECDPLVR+GLE+TARH   
Sbjct: 357  YIQSPADQLADGPPDIRPAFRHTLKTITKESQKTSRRYGLIECDPLVRKGLERTARHMVI 416

Query: 1055 XXXXXXXXPKRWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGN 876
                    P  W+GYDKG YLFLPSY+MRTHG++QQREAVK  S  QLEP+FEAL+TLGN
Sbjct: 417  PYMPMLVPPLNWTGYDKGAYLFLPSYVMRTHGARQQREAVKRTSRKQLEPIFEALDTLGN 476

Query: 875  TRWRANWRVLSVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKEN 696
            T+WR N RVL V+D++WASGGRLA LVDR+DVPLP EP+T+DE E   W+WK+KA KKEN
Sbjct: 477  TKWRINKRVLGVVDRIWASGGRLADLVDREDVPLPEEPETEDEAELKKWKWKVKAVKKEN 536

Query: 695  SERHSQRCDIELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 516
            SERHSQRCD ELKLAVAR+MKDENGF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA
Sbjct: 537  SERHSQRCDTELKLAVARRMKDENGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 596

Query: 515  EGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLG 336
            EGRPLGKSGLRWLKIHLANLYAGGVDKLSY+GRI+F ENH+D+IFDSAD+PLEGRRWWL 
Sbjct: 597  EGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLN 656

Query: 335  AEDPFQCLAACINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 156
            A+DPFQCLA CINLSEALRS SPET ISH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLV
Sbjct: 657  ADDPFQCLAVCINLSEALRSCSPETMISHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLV 716

Query: 155  NGDKPADVYSGIAARVLEIMQNDAKKDP-SDPEAFRARLLVNHVDRKLVKQT 3
             GDKPADVYSG+AARVL+IM+ DA+KDP ++P A  ARLL+N VDRKLVKQT
Sbjct: 717  AGDKPADVYSGVAARVLDIMRRDAQKDPTTEPNAMHARLLINQVDRKLVKQT 768


>ref|XP_008783046.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Phoenix dactylifera]
          Length = 1038

 Score =  981 bits (2536), Expect = 0.0
 Identities = 491/665 (73%), Positives = 553/665 (83%), Gaps = 17/665 (2%)
 Frame = -3

Query: 1946 IQGLLKEMSKEDEKGGAIKI------------MSEGRRLAGITRGRKY----KEQVRLET 1815
            IQG+L+EMSK D + G+ KI            + + R + G+  G KY    + Q+R+ET
Sbjct: 154  IQGMLEEMSKIDVREGS-KIGGNLEEVRPKQQLGQPRMVCGMGSG-KYAILRRRQIRIET 211

Query: 1814 EAWDNAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAY 1635
            EAW+ AAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLR+ I AEQE  R  + R ++
Sbjct: 212  EAWEQAAKEYKELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDQIAAEQEQCRDPRTRVSH 271

Query: 1634 APYIDQLPADMTALITMHKLMALLMTGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXX 1455
             PY  QLPADM A+ITMHKLM+LLMTG   G  RVVQAACQIGEAIE EVRIHRFLE   
Sbjct: 272  GPYFYQLPADMMAVITMHKLMSLLMTGNGDGGIRVVQAACQIGEAIEHEVRIHRFLEKTR 331

Query: 1454 XXXXXXXTAEGGESDAVAKENEKLRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAK 1275
                     E  E   + KE E LRKKVT LMKKQK+ QVRKIVKGQDD KPWGQDAQAK
Sbjct: 332  KKTDKDKKNEDVEGATLTKEQEFLRKKVTNLMKKQKVHQVRKIVKGQDDSKPWGQDAQAK 391

Query: 1274 MGSRLIELLMETAYIQPPVNQSAEGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLV 1095
            +GSRLIELLMETAYIQPPV+QSA+GPPDIRPAFRHSL+TV+K+ QK SRRYGVIECDPLV
Sbjct: 392  VGSRLIELLMETAYIQPPVSQSADGPPDIRPAFRHSLRTVTKEQQKHSRRYGVIECDPLV 451

Query: 1094 RQGLEKTARHXXXXXXXXXXXPKRWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQ 915
            RQGL++TARH           P  W+GY+KGG+LFLPSYIMRTHG++QQREAV+ A   +
Sbjct: 452  RQGLDRTARHMVIPYMPMLVPPVNWTGYEKGGHLFLPSYIMRTHGARQQREAVRRAPRKE 511

Query: 914  LEPVFEALNTLGNTRWRANWRVLSVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERN 735
            ++ VFEAL+TLG+T+WR N RVLSV+D++W+SGGRLA LVDRDD+PLP +PDT+D  E  
Sbjct: 512  MQAVFEALDTLGSTKWRVNKRVLSVVDRIWSSGGRLADLVDRDDIPLPEKPDTEDGAEIR 571

Query: 734  AWRWKLKAAKKENSERHSQRCDIELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNH 555
             W+WK+K+ KKENSE+HSQRCD+ELKLAVARKMKDE GFYYPHNLDFRGRAYPMHPYLNH
Sbjct: 572  KWKWKVKSVKKENSEKHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 631

Query: 554  LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDS 375
            LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGR++F ENH+D+IFDS
Sbjct: 632  LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRVAFTENHLDDIFDS 691

Query: 374  ADKPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAAL 195
            AD+PLEGRRWWLGAEDPFQCLA CINLSEALRSSSPET ISHMPVHQDGSCNGLQHYAAL
Sbjct: 692  ADRPLEGRRWWLGAEDPFQCLAVCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAAL 751

Query: 194  GRDKLGAAAVNLVNGDKPADVYSGIAARVLEIMQNDAKKDP-SDPEAFRARLLVNHVDRK 18
            GRDKLGA AVNLV GDKPADVYS IAARVLEIM+ DA+KDP +DP+A RARLLVN VDRK
Sbjct: 752  GRDKLGAIAVNLVAGDKPADVYSEIAARVLEIMRRDAQKDPATDPDALRARLLVNQVDRK 811

Query: 17   LVKQT 3
            LVKQT
Sbjct: 812  LVKQT 816


>ref|XP_010929072.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like [Elaeis guineensis]
          Length = 1038

 Score =  979 bits (2530), Expect = 0.0
 Identities = 491/663 (74%), Positives = 545/663 (82%), Gaps = 15/663 (2%)
 Frame = -3

Query: 1946 IQGLLKEMSKEDEKGGAI----------KIMSEGRRLAGITRGRKY----KEQVRLETEA 1809
            IQG+L+EMSK D + G+           K+  E  R+       KY    + Q+R+ETEA
Sbjct: 154  IQGMLEEMSKIDAREGSKIGGNLEEVRPKVPLEKPRMVPGMGSGKYAILRRRQIRIETEA 213

Query: 1808 WDNAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAP 1629
            W+ AAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLR+ I AEQE      NR +Y  
Sbjct: 214  WEQAAKEYKELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDQIAAEQEKCGDPGNRLSYGR 273

Query: 1628 YIDQLPADMTALITMHKLMALLMTGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXX 1449
            Y +QLPADM A+ITMHKLM+LLMTG  +G  RVVQAACQIGEAIE EVRIHRFLE     
Sbjct: 274  YFNQLPADMMAVITMHKLMSLLMTGSGYGGIRVVQAACQIGEAIEHEVRIHRFLEKTRKK 333

Query: 1448 XXXXXTAEGGESDAVAKENEKLRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMG 1269
                   E  E   +AKE E LRKKVT LMKKQKL+QVRKIV+GQDD KPWGQD QAK+G
Sbjct: 334  ADKDKKNEDVEGATLAKEQEFLRKKVTNLMKKQKLRQVRKIVRGQDDSKPWGQDFQAKVG 393

Query: 1268 SRLIELLMETAYIQPPVNQSAEGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQ 1089
            SRLIELLMETAYIQPPV+QSA+GPPDIRPAFRHSL+TV+K+ QK SRRYGVIECDPLVRQ
Sbjct: 394  SRLIELLMETAYIQPPVSQSADGPPDIRPAFRHSLRTVTKEQQKHSRRYGVIECDPLVRQ 453

Query: 1088 GLEKTARHXXXXXXXXXXXPKRWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLE 909
            GL++TARH           P  W+GYDKGG+LFLPSYIMR HG++QQREAVK A   Q++
Sbjct: 454  GLDRTARHMVIPYMPMLVPPVHWTGYDKGGHLFLPSYIMRIHGARQQREAVKRAPRMQMQ 513

Query: 908  PVFEALNTLGNTRWRANWRVLSVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAW 729
             VFEAL+TLG T+WR N RVLSV+D++W+ GGRLA LVDRDD+PLP +PDT+DE     W
Sbjct: 514  AVFEALDTLGTTKWRINKRVLSVVDRMWSGGGRLADLVDRDDIPLPEKPDTEDEATIRKW 573

Query: 728  RWKLKAAKKENSERHSQRCDIELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLG 549
            +WK+K+ KKENSERHSQRCD+ELKLAVARKMKDE GFYYPHNLDFRGRAYPMHPYLNHLG
Sbjct: 574  KWKVKSVKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 633

Query: 548  SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSAD 369
            SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGR++F ENH+D IFDSAD
Sbjct: 634  SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRVAFTENHLDEIFDSAD 693

Query: 368  KPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGR 189
            +PLEGRRWWLGAEDPFQCLA CINLSEALRSSSPET ISHMPVHQDGSCNGLQHYAALGR
Sbjct: 694  RPLEGRRWWLGAEDPFQCLAVCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGR 753

Query: 188  DKLGAAAVNLVNGDKPADVYSGIAARVLEIMQNDAKKDPS-DPEAFRARLLVNHVDRKLV 12
            DKLGA AVNLV GDKPADVYS IAARVLEIM+ DA+KDP+ DP A RARLLVN VDRKLV
Sbjct: 754  DKLGAIAVNLVAGDKPADVYSEIAARVLEIMRRDAQKDPAIDPNALRARLLVNQVDRKLV 813

Query: 11   KQT 3
            KQT
Sbjct: 814  KQT 816


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  978 bits (2529), Expect = 0.0
 Identities = 479/652 (73%), Positives = 550/652 (84%), Gaps = 4/652 (0%)
 Frame = -3

Query: 1946 IQGLLKEMSKEDEKGGAIKIMSEGRRLAGITRGRKY---KEQVRLETEAWDNAAKEYKEL 1776
            +Q L++E++K D      K+  + + + G+ +G+     + Q+++ETEAW+ AAKEY+EL
Sbjct: 112  VQELVEEVNKGD------KLEKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYREL 165

Query: 1775 LADMCEQKLAPNLPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTA 1596
            L+DMCEQKLAPNLPY+KSLFLGWFEPLR+ I AEQ+L +QGKNR AYAPY D LPADM A
Sbjct: 166  LSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMA 225

Query: 1595 LITMHKLMALLMTGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGGE 1416
            +ITMHKLM LLMTG  +G+ARVVQAAC IGEAIE EVRI RF+E            +GG 
Sbjct: 226  VITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG- 284

Query: 1415 SDAVAKENEKLRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETA 1236
            S+ V KE EKLRKKV++LMKKQKLQQVR+IVK QDD KPWGQDA  K+GSRLIELL+ETA
Sbjct: 285  SNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETA 344

Query: 1235 YIQPPVNQSAEGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXX 1056
            YIQPP +Q  +GPPDIRPAF H+LKTV K+ QK +RRYGVIECDPLVR+GLEKTARH   
Sbjct: 345  YIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVI 404

Query: 1055 XXXXXXXXPKRWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGN 876
                    P  W+GYDKG YLFLPSY+MR HG++QQREA+K A    LEP FEALNTLGN
Sbjct: 405  PYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGN 464

Query: 875  TRWRANWRVLSVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKEN 696
            T+WR N RVL VID++WASGGRLA LVDR+DVPLP EPDT+DE E   W+WK+++ KKEN
Sbjct: 465  TKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKEN 524

Query: 695  SERHSQRCDIELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 516
            SERHSQRCDIELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA
Sbjct: 525  SERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 584

Query: 515  EGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLG 336
            EGRPLGKSGLRWLKIHLAN+YAGGVDKLSY+GR++F ENH+++IFDSAD+PLEGRRWWL 
Sbjct: 585  EGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLS 644

Query: 335  AEDPFQCLAACINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 156
            AEDPFQCLA CINLSEALRSSSPET ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV
Sbjct: 645  AEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 704

Query: 155  NGDKPADVYSGIAARVLEIMQNDAKKDP-SDPEAFRARLLVNHVDRKLVKQT 3
             G+KPADVYSGIAARVL+IMQ DA+KDP ++P A RARLL++ VDRKLVKQT
Sbjct: 705  AGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQT 756


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
            gi|462411068|gb|EMJ16117.1| hypothetical protein
            PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  973 bits (2515), Expect = 0.0
 Identities = 504/806 (62%), Positives = 589/806 (73%), Gaps = 27/806 (3%)
 Frame = -3

Query: 2339 MLSSKFAISPTNLNRNFDFSISIERPRETVNSKPKGVNMWRNVAKQLAS--------SRK 2184
            M  S+  +SP N+++NF F   +   +   N       +WRN AKQ  S        S+ 
Sbjct: 1    MSRSQTPLSPANISKNFTFHSPLIFHK---NPSMISTTVWRNFAKQAISRKQRFHINSQS 57

Query: 2183 IGR------FSKKTVFEGKIKSSELTKPENFGYLAVGCR---QIMTSHDIMGSKSLMGLR 2031
              R        +++VF G  K  EL+   +  +  VG R    I +  D M   S   +R
Sbjct: 58   FSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSFWSVR 117

Query: 2030 MDCW------RSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDEKGGAIKIMSEGRR 1869
               W      + Y                    E+Q LL++MS E+++    K  +   R
Sbjct: 118  NPIWFNGFCPKGYASVAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYKQRTRQNR 177

Query: 1868 LAGITRGRKY---KEQVRLETEAWDNAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEP 1698
              G+ +G+ +   + Q+++ETEAW+ AAKEY+EL+ DMCEQKLAPNLPYMKSLFLGWFEP
Sbjct: 178  ARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEP 237

Query: 1697 LRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLMTGGEHGNARVVQAA 1518
            LRNAI  EQ+L R+GKN+ AYAPYIDQLPADM ++ITMHKLM LLMTGGEHG  RVV AA
Sbjct: 238  LRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAA 297

Query: 1517 CQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGGESDAVAKENEKLRKKVTILMKKQKLQQ 1338
            C IGEAIEQEVRIH+FLE            E GESDA  KE EKL KKVT LMKKQKL+ 
Sbjct: 298  CTIGEAIEQEVRIHKFLEMTRKKKVDKDQ-ENGESDAAKKEREKLNKKVTNLMKKQKLKA 356

Query: 1337 VRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSAEGPPDIRPAFRHSLKT 1158
            VR IV   D  K W  +A+AK+GSRLIELL +TA+IQPP +Q A+GPPDIRPAF H+ +T
Sbjct: 357  VRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRT 416

Query: 1157 VSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPKRWSGYDKGGYLFLPSY 978
            V+KD + +SRRYGVIECDPLV +GLEKTARH           P  W+GYDKGGY FLPSY
Sbjct: 417  VAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFFLPSY 476

Query: 977  IMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVLSVIDKLWASGGRLAGL 798
            +MR HG++QQREA+K     QLEPVF+AL+ LGNTRWR N RVLSV+D++WASGG LA L
Sbjct: 477  VMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGGHLADL 536

Query: 797  VDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDIELKLAVARKMKDENGF 618
            VDR+DVPLP EPDT+DET    W+WK+K+ KKEN ERHSQRCD ELKLAVARKMKDE GF
Sbjct: 537  VDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDTELKLAVARKMKDEEGF 596

Query: 617  YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVD 438
            YYPHNLDFRGRAYPMHPYLNHLGSD+CRGILEF EGRPLGKSGL WLKIHLANLYAGGVD
Sbjct: 597  YYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHLANLYAGGVD 656

Query: 437  KLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETY 258
            KLS +GRI+F ENH+D+IFDS DKPLEGRRWWL AEDPFQCLA CINL+EALRSSSPET+
Sbjct: 657  KLSLEGRIAFTENHLDDIFDSVDKPLEGRRWWLKAEDPFQCLAVCINLAEALRSSSPETF 716

Query: 257  ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYSGIAARVLEIMQNDAKK 78
            ISH+PVHQDGSCNGLQHYAALGRDKLGAA+VNLV G+KPADVYSGIA RVLEIM+ DA+K
Sbjct: 717  ISHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVTGEKPADVYSGIAVRVLEIMRRDAQK 776

Query: 77   DP-SDPEAFRARLLVNHVDRKLVKQT 3
            DP   PEA RA+LL+N VDRKLVKQT
Sbjct: 777  DPVVFPEALRAKLLINQVDRKLVKQT 802


>ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            isoform X2 [Prunus mume]
          Length = 862

 Score =  971 bits (2511), Expect = 0.0
 Identities = 502/806 (62%), Positives = 590/806 (73%), Gaps = 27/806 (3%)
 Frame = -3

Query: 2339 MLSSKFAISPTNLNRNFDFSISIERPRETVNSKPKGVNMWRNVAKQLASSRK-------- 2184
            M SS+  +SP N+++NF F   +   +   N       +WRN AKQ  S ++        
Sbjct: 1    MSSSQTPLSPANISKNFTFHSPLIFHK---NPSMISTTVWRNFAKQAISRKQRFHINSQS 57

Query: 2183 ------IGRFSKKTVFEGKIKSSELTKPENFGYLAVGCR---QIMTSHDIMGSKSLMGLR 2031
                  + R  +++VF G  K  EL+   +  +  VG R    I +  D M   S   +R
Sbjct: 58   FSRAYSLLRICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGTISSPEDCMCKPSFWSVR 117

Query: 2030 MD------CWRSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDEKGGAIKIMSEGRR 1869
                    C + Y                    E+Q LL++MS E+++    K  +   R
Sbjct: 118  NPIGFNGFCPKGYASVAEAVSSTDVEEDVSVVDEVQELLQQMSIEEKREAQYKQRTRQNR 177

Query: 1868 LAGITRGRKY---KEQVRLETEAWDNAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEP 1698
              G+ +G+ +   + Q+++ETEAW+ AAKEY+EL+ DMCEQKLAPNLPYMKSLFLGWFEP
Sbjct: 178  ARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEP 237

Query: 1697 LRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLMTGGEHGNARVVQAA 1518
            LRNAI  EQ+L R+GK + AYAPYIDQLPADM ++ITMHKLM LLMTGGEHG  RVV AA
Sbjct: 238  LRNAIDNEQDLCRKGKKKAAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAA 297

Query: 1517 CQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGGESDAVAKENEKLRKKVTILMKKQKLQQ 1338
            C IGEAIEQEVRIH+FLE            E GESDA  KE EKL KKVT LMKKQKL+ 
Sbjct: 298  CTIGEAIEQEVRIHKFLEMTRKKKVDKDQ-ENGESDAAMKEREKLNKKVTNLMKKQKLKA 356

Query: 1337 VRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSAEGPPDIRPAFRHSLKT 1158
            VR IV   D  K W  +A+AK+GSRLIELL +TA+IQPP +Q A+GPPDIRPAF H+ +T
Sbjct: 357  VRGIVSKHDASKSWSLEARAKIGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRT 416

Query: 1157 VSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPKRWSGYDKGGYLFLPSY 978
            V+KD + +SRRYGVIECDPLV +GLEKTARH           P  W+GYDKGGY FLPSY
Sbjct: 417  VAKDAKNASRRYGVIECDPLVLKGLEKTARHVMIPYMPMLVPPLNWTGYDKGGYFFLPSY 476

Query: 977  IMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVLSVIDKLWASGGRLAGL 798
            +MR HG++QQREA+K     QLEPVF+AL+ LGNTRWR N RVLSV+D++WASGG LA L
Sbjct: 477  VMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGGHLADL 536

Query: 797  VDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDIELKLAVARKMKDENGF 618
            VDR+DVPLP EPDT+DET    W+WK+K+ KKEN ERHSQRCDIELKLAVARKMKDE GF
Sbjct: 537  VDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDIELKLAVARKMKDEEGF 596

Query: 617  YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVD 438
            YYPHNLDFRGRAYPMHPYLNHLGSD+CRGILEF EGRPLGKSGL WLKIHLANLYAGGVD
Sbjct: 597  YYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHLANLYAGGVD 656

Query: 437  KLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETY 258
            KLS +GRI+F ENH+D+IFDS D PLEGRRWWL AEDPFQCLA CINL+EALRSSSPET+
Sbjct: 657  KLSLEGRIAFTENHLDDIFDSVDIPLEGRRWWLKAEDPFQCLAVCINLAEALRSSSPETF 716

Query: 257  ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYSGIAARVLEIMQNDAKK 78
            ISH+PVHQDGSCNGLQHYAALGRDKLGAA+VNLV G+KPADVYSGIA RVLEIM+ DA+K
Sbjct: 717  ISHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVTGEKPADVYSGIAVRVLEIMRRDAQK 776

Query: 77   DPS-DPEAFRARLLVNHVDRKLVKQT 3
            DP+  PEA  A+LL+N VDRKLVKQT
Sbjct: 777  DPTVFPEALHAKLLINQVDRKLVKQT 802


>ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            isoform X1 [Prunus mume]
          Length = 1024

 Score =  971 bits (2511), Expect = 0.0
 Identities = 502/806 (62%), Positives = 590/806 (73%), Gaps = 27/806 (3%)
 Frame = -3

Query: 2339 MLSSKFAISPTNLNRNFDFSISIERPRETVNSKPKGVNMWRNVAKQLASSRK-------- 2184
            M SS+  +SP N+++NF F   +   +   N       +WRN AKQ  S ++        
Sbjct: 1    MSSSQTPLSPANISKNFTFHSPLIFHK---NPSMISTTVWRNFAKQAISRKQRFHINSQS 57

Query: 2183 ------IGRFSKKTVFEGKIKSSELTKPENFGYLAVGCR---QIMTSHDIMGSKSLMGLR 2031
                  + R  +++VF G  K  EL+   +  +  VG R    I +  D M   S   +R
Sbjct: 58   FSRAYSLLRICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGTISSPEDCMCKPSFWSVR 117

Query: 2030 MD------CWRSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDEKGGAIKIMSEGRR 1869
                    C + Y                    E+Q LL++MS E+++    K  +   R
Sbjct: 118  NPIGFNGFCPKGYASVAEAVSSTDVEEDVSVVDEVQELLQQMSIEEKREAQYKQRTRQNR 177

Query: 1868 LAGITRGRKY---KEQVRLETEAWDNAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEP 1698
              G+ +G+ +   + Q+++ETEAW+ AAKEY+EL+ DMCEQKLAPNLPYMKSLFLGWFEP
Sbjct: 178  ARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEP 237

Query: 1697 LRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLMTGGEHGNARVVQAA 1518
            LRNAI  EQ+L R+GK + AYAPYIDQLPADM ++ITMHKLM LLMTGGEHG  RVV AA
Sbjct: 238  LRNAIDNEQDLCRKGKKKAAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAA 297

Query: 1517 CQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGGESDAVAKENEKLRKKVTILMKKQKLQQ 1338
            C IGEAIEQEVRIH+FLE            E GESDA  KE EKL KKVT LMKKQKL+ 
Sbjct: 298  CTIGEAIEQEVRIHKFLEMTRKKKVDKDQ-ENGESDAAMKEREKLNKKVTNLMKKQKLKA 356

Query: 1337 VRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSAEGPPDIRPAFRHSLKT 1158
            VR IV   D  K W  +A+AK+GSRLIELL +TA+IQPP +Q A+GPPDIRPAF H+ +T
Sbjct: 357  VRGIVSKHDASKSWSLEARAKIGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRT 416

Query: 1157 VSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPKRWSGYDKGGYLFLPSY 978
            V+KD + +SRRYGVIECDPLV +GLEKTARH           P  W+GYDKGGY FLPSY
Sbjct: 417  VAKDAKNASRRYGVIECDPLVLKGLEKTARHVMIPYMPMLVPPLNWTGYDKGGYFFLPSY 476

Query: 977  IMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVLSVIDKLWASGGRLAGL 798
            +MR HG++QQREA+K     QLEPVF+AL+ LGNTRWR N RVLSV+D++WASGG LA L
Sbjct: 477  VMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGGHLADL 536

Query: 797  VDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDIELKLAVARKMKDENGF 618
            VDR+DVPLP EPDT+DET    W+WK+K+ KKEN ERHSQRCDIELKLAVARKMKDE GF
Sbjct: 537  VDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDIELKLAVARKMKDEEGF 596

Query: 617  YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVD 438
            YYPHNLDFRGRAYPMHPYLNHLGSD+CRGILEF EGRPLGKSGL WLKIHLANLYAGGVD
Sbjct: 597  YYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHLANLYAGGVD 656

Query: 437  KLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETY 258
            KLS +GRI+F ENH+D+IFDS D PLEGRRWWL AEDPFQCLA CINL+EALRSSSPET+
Sbjct: 657  KLSLEGRIAFTENHLDDIFDSVDIPLEGRRWWLKAEDPFQCLAVCINLAEALRSSSPETF 716

Query: 257  ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYSGIAARVLEIMQNDAKK 78
            ISH+PVHQDGSCNGLQHYAALGRDKLGAA+VNLV G+KPADVYSGIA RVLEIM+ DA+K
Sbjct: 717  ISHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVTGEKPADVYSGIAVRVLEIMRRDAQK 776

Query: 77   DPS-DPEAFRARLLVNHVDRKLVKQT 3
            DP+  PEA  A+LL+N VDRKLVKQT
Sbjct: 777  DPTVFPEALHAKLLINQVDRKLVKQT 802


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|731418092|ref|XP_010660553.1|
            PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|298204431|emb|CBI16911.3| unnamed protein product
            [Vitis vinifera]
          Length = 1035

 Score =  969 bits (2506), Expect = 0.0
 Identities = 511/813 (62%), Positives = 600/813 (73%), Gaps = 34/813 (4%)
 Frame = -3

Query: 2339 MLSSKFAISPTNLNRNFDFSISIERPRE-TVNSKPKGVNMWRNVAKQLA----------S 2193
            M S K  I   NL R+ D  IS E+P     N   K   MWRN+AK+             
Sbjct: 1    MSSGKTPILSANLGRDLDLIISFEKPTNFRPNPLKKPTVMWRNIAKRAIPRAPRKCVYLD 60

Query: 2192 SRKIGR------FSKKTVFEGKIK--SSELTKPENFGYLAVGCR---QIMTSHDIMGSKS 2046
            S+ + R      FS+  +F   +K  + E +   + G+  +G R   +I +  D +G  S
Sbjct: 61   SQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAVGRPS 120

Query: 2045 L------MGLRMDCWRSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDEKGGAIKIM 1884
                   MG    C +SY                    EIQ LL EM KE+++    K  
Sbjct: 121  FGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVNFKRR 180

Query: 1883 SEGRRLAGITRGRKYK---EQVRLETEAWDNAAKEYKELLADMCEQKLAPNLPYMKSLFL 1713
             + +   G+ +GR  +    QV++ETEAW+ AAKEYKELL DMCEQKLAPNLPYMKSLFL
Sbjct: 181  EKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSLFL 240

Query: 1712 GWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLMTGGEHGNAR 1533
            GWFEPLR+AIV EQEL R GKN+ AYAPY DQLPADM ++ITMHKL+ LLMTGGEHG+ R
Sbjct: 241  GWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGSTR 300

Query: 1532 VVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXT-AEGGESDAVAKENEKLRKKVTILMK 1356
            VVQAAC IG+AIEQEVRIH FLE             EGG  D V  E EKLRKKVT LMK
Sbjct: 301  VVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMK 360

Query: 1355 KQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPV-NQSAEGPPDIRPA 1179
            KQKL   R+IVKG D+ KPWG +A+AK+GSRLIELLM+TAYIQPPV NQ A+ PPDIRPA
Sbjct: 361  KQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPA 420

Query: 1178 FRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPKRWSGYDKGG 999
            F H+ KTV ++ +K  RR+GVIECDPLV++GLE+TARH           P +W+GYDKG 
Sbjct: 421  FVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYDKGA 480

Query: 998  YLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVLSVIDKLWAS 819
            +LFLPSY+MRTHG++QQREAVK A   QLEPVFEALNTLGNT+WR N R+  V+D++WA 
Sbjct: 481  HLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDRIWAG 540

Query: 818  GGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDIELKLAVARK 639
            GG LA LVDR+DVPLP +PDT+DE +   W+WK+K+ KK NSERHSQRCDIELKLAVARK
Sbjct: 541  GGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKLAVARK 600

Query: 638  MKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN 459
            MKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG SGL WLKIHLAN
Sbjct: 601  MKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLKIHLAN 660

Query: 458  LYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAACINLSEALR 279
            L+AGGVDKLS++GRI+F ENH+D+IFDSAD+PLEG+RWWL AEDPFQ LAACINLSEALR
Sbjct: 661  LFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINLSEALR 720

Query: 278  SSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYSGIAARVLEI 99
            SSSPET ISH+PVHQDGSCNGLQHYAALGRD+LGA AVNLV G+KPADVYSGIAARVL+I
Sbjct: 721  SSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAARVLDI 780

Query: 98   MQNDAKKDPS-DPEAFRARLLVNHVDRKLVKQT 3
            M+ DA+KDP+  P+A RAR+L+N VDRKLVKQT
Sbjct: 781  MKRDAEKDPAIFPDALRARILINQVDRKLVKQT 813


>ref|XP_008788965.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Phoenix
            dactylifera]
          Length = 1036

 Score =  959 bits (2478), Expect = 0.0
 Identities = 500/792 (63%), Positives = 586/792 (73%), Gaps = 39/792 (4%)
 Frame = -3

Query: 2261 RETVNSKPKGVNMWRNVAKQLASSRKIGRF------------------SKKTVFEGKIKS 2136
            +ET +  PK  NMWR +A+  ++S K  RF                  S+ +    K + 
Sbjct: 25   KETDHFSPKSSNMWRIIAQTASNSLKNLRFFAGGSLSALRPISSFLGFSQDSFLCEKNRI 84

Query: 2135 SELTKPENFGYLAVGCRQIMTSHDIMGSKS-----LMGLRMDCWRSYXXXXXXXXXXXXX 1971
             +L  P +  +  +G  +       +G  +     L G   +  + Y             
Sbjct: 85   WDLRPPLSSRFCDIGSHRNGELWPSVGYSNCSIGKLSGFLANS-KGYANVAEAVVSTDLD 143

Query: 1970 XXXXXXXEIQGLLKEMSK----EDEKGGAIKI-------MSEGRRLAGITRGRKY----K 1836
                   EIQ LL+EMS+    ED K             + E ++++G+   +KY    +
Sbjct: 144  EEASSIEEIQSLLEEMSRVEVAEDWKVSDRSQEFPQKAQLEEPKKVSGMG-AKKYAKLRQ 202

Query: 1835 EQVRLETEAWDNAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEPLRNAIVAEQELWRQ 1656
             Q+++ETEAW+ AAKEYKELL DMCEQKLAPNLPY+KSLFLGWFEP R+ I AEQE  R 
Sbjct: 203  RQIKIETEAWEQAAKEYKELLQDMCEQKLAPNLPYVKSLFLGWFEPFRDKIAAEQEKCRD 262

Query: 1655 GKNRGAYAPYIDQLPADMTALITMHKLMALLMTGGEHGNARVVQAACQIGEAIEQEVRIH 1476
             +NR AY PYI QLPADM A+ITMHKLM+LLMTGG +G+  VVQAACQ+G AIEQEV+IH
Sbjct: 263  VRNRAAYGPYIGQLPADMMAVITMHKLMSLLMTGGSNGSVLVVQAACQVGSAIEQEVKIH 322

Query: 1475 RFLEXXXXXXXXXXTAEGGESDAVAKENEKLRKKVTILMKKQKLQQVRKIVKGQDDLKPW 1296
            RFLE           +   E D + KE E LRKKVT LMKKQKLQQVRKIVKGQDD KPW
Sbjct: 323  RFLEKSKQKTNINKKSGVAEVDNITKEQELLRKKVTNLMKKQKLQQVRKIVKGQDDSKPW 382

Query: 1295 GQDAQAKMGSRLIELLMETAYIQPPVNQSAEGPPDIRPAFRHSLKTVSKDNQKSSRRYGV 1116
            GQD++AK+GSRLIELL+ETAYIQPPVNQ A+ PPDIRPAFRH L+ V  + +K SRRYG 
Sbjct: 383  GQDSRAKVGSRLIELLVETAYIQPPVNQLADSPPDIRPAFRHLLRNVQNEQKKISRRYGF 442

Query: 1115 IECDPLVRQGLEKTARHXXXXXXXXXXXPKRWSGYDKGGYLFLPSYIMRTHGSKQQREAV 936
            IECDPLVRQGL++TARH           P  W GYDKG +LFLPSY+MRTHGS+QQREAV
Sbjct: 443  IECDPLVRQGLDRTARHMVIPYMPMLVPPISWKGYDKGAHLFLPSYLMRTHGSRQQREAV 502

Query: 935  KWASTTQLEPVFEALNTLGNTRWRANWRVLSVIDKLWASGGRLAGLVDRDDVPLPVEPDT 756
            K A   QL+ VFEAL+TLGNT+WR N RVLS++D++W+SGGRLA LVDRDD+PLP +P+T
Sbjct: 503  KRAPRKQLQLVFEALDTLGNTKWRVNKRVLSIVDRMWSSGGRLANLVDRDDIPLPEKPET 562

Query: 755  DDETERNAWRWKLKAAKKENSERHSQRCDIELKLAVARKMKDENGFYYPHNLDFRGRAYP 576
            +D  E   W+WKLK+ KKENSERHSQRCD+E+KLAVARKMKDE GFYYPHNLDFRGRAYP
Sbjct: 563  EDGAEIRKWKWKLKSVKKENSERHSQRCDVEIKLAVARKMKDEEGFYYPHNLDFRGRAYP 622

Query: 575  MHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFAENH 396
            MHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRI+F ENH
Sbjct: 623  MHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENH 682

Query: 395  IDNIFDSADKPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETYISHMPVHQDGSCNG 216
            +D+IFDSAD+PLEGRRWWLGAEDPFQCLA CINL+EALRSSSPE+ ISH+PVHQDGSCNG
Sbjct: 683  LDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLAEALRSSSPESTISHIPVHQDGSCNG 742

Query: 215  LQHYAALGRDKLGAAAVNLVNGDKPADVYSGIAARVLEIMQNDAKKDP-SDPEAFRARLL 39
            LQHYAALGRDKLGA +VNLV G+KPADVYSGIAARV EIMQ DA+KDP ++P A  ARLL
Sbjct: 743  LQHYAALGRDKLGAISVNLVAGEKPADVYSGIAARVREIMQKDAEKDPATEPNALHARLL 802

Query: 38   VNHVDRKLVKQT 3
            ++ VDRKLVKQT
Sbjct: 803  IDQVDRKLVKQT 814


>ref|XP_009378288.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial [Pyrus x bretschneideri]
          Length = 1025

 Score =  958 bits (2476), Expect = 0.0
 Identities = 498/807 (61%), Positives = 588/807 (72%), Gaps = 28/807 (3%)
 Frame = -3

Query: 2339 MLSSKFAISPTNLNRNFDFSISIERPRETVNSKPKGVNMWRNVAKQLASSRKIGR----- 2175
            M  ++   SP N  +NF F I I   +   N      ++WRN+AKQ     + GR     
Sbjct: 1    MSCAQIPFSPANFTKNFTFRIPIGFHK---NPSMIFTSLWRNLAKQAIPRNQRGRLNSQS 57

Query: 2174 ---------FSKKTVFEGKIKSSELTKPENFGYLAVGCR---QIMTSHDIMGSKSLMGLR 2031
                     FS+++V     K  +L    N G+  VG     +I T    MG+ S   +R
Sbjct: 58   ISRAYSLLGFSRESVSPQSFKPFQLGSYSNMGFPEVGFPGKGEISTGESYMGNPSYWSVR 117

Query: 2030 MDCW------RSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDEKGGAIKIMSEGRR 1869
                      R Y                    E+Q LL++MSKE ++          RR
Sbjct: 118  TPIGFNGFFPRGYASVAEVVSSTDAEEDVSLVDEVQELLQQMSKEGKRQTDHWRRMRLRR 177

Query: 1868 LAGITRGRKY---KEQVRLETEAWDNAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEP 1698
            + G+ + + +   + Q+++ETEAW+ AAKEY+EL+ DMCE KLAPNLPYMKSLFLGWFEP
Sbjct: 178  VRGMGQAKYFALKRRQIKIETEAWERAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWFEP 237

Query: 1697 LRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLMTGGEHGNARVVQAA 1518
            +RNAI  EQ+L R+GKN+ AYAPYIDQLPADM ++ITMHKLM LLMTGGEHG  RVV AA
Sbjct: 238  MRNAIEKEQDLCRKGKNKAAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVSAA 297

Query: 1517 CQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGGESDAVAKENEKLRKKVTILMKKQKLQQ 1338
            C IGEAIE EVRIH FLE            E  ES  V KE EKL KKVT LMKKQKLQ 
Sbjct: 298  CTIGEAIEHEVRIHNFLERTRKKKFNKEE-ENRESGDVLKEQEKLNKKVTNLMKKQKLQA 356

Query: 1337 VRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSAEGPPDIRPAFRHSLKT 1158
            VR IV+  D  KPW QDA+AK+GSRLIELL++T++IQPP +Q A+GPPD+RPAF H+ +T
Sbjct: 357  VRHIVRKHDASKPWSQDARAKVGSRLIELLIQTSFIQPPADQLADGPPDLRPAFIHTFRT 416

Query: 1157 VSKDNQK-SSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPKRWSGYDKGGYLFLPS 981
            V+KD +  SSRR+GVI+CDPLV +G EKT  H           P  W+GYD+GGY FLPS
Sbjct: 417  VAKDPKNTSSRRFGVIQCDPLVLKGFEKTGSHMVIPYMPMLVPPVNWTGYDRGGYFFLPS 476

Query: 980  YIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVLSVIDKLWASGGRLAG 801
            Y+MR HG+KQQREA+K   + QLEPVF+AL+TLGNTRWR N RVL+V+D++WASGGRLA 
Sbjct: 477  YVMRIHGAKQQREAIKRTPSEQLEPVFKALDTLGNTRWRVNKRVLNVVDRIWASGGRLAD 536

Query: 800  LVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDIELKLAVARKMKDENG 621
            LVDRD+VPLP EPDTDDET    W+WK+K+ KKEN ERHSQRCD+ELKL VAR+MKDE G
Sbjct: 537  LVDRDNVPLPEEPDTDDETLLKKWKWKVKSVKKENMERHSQRCDLELKLTVAREMKDEEG 596

Query: 620  FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGV 441
            FYYPHNLDFRGRAYPMHPYLNHLGSDL RGILEFAEGRPLGKSGLRWLKIHLANLYA GV
Sbjct: 597  FYYPHNLDFRGRAYPMHPYLNHLGSDLSRGILEFAEGRPLGKSGLRWLKIHLANLYASGV 656

Query: 440  DKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPET 261
            DKLS +GRI+F ENH+D+IFDS D+PLEGRRWWL AEDPFQCLA CINL+EALRSSSPET
Sbjct: 657  DKLSREGRIAFIENHLDDIFDSVDRPLEGRRWWLKAEDPFQCLAVCINLAEALRSSSPET 716

Query: 260  YISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYSGIAARVLEIMQNDAK 81
            +ISH+PVHQDGSCNGLQHYAALGRDKLGAA+VNLV G+KPADVYSGIAARVLEIM+ DA+
Sbjct: 717  FISHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVAGEKPADVYSGIAARVLEIMRRDAQ 776

Query: 80   KDPS-DPEAFRARLLVNHVDRKLVKQT 3
            KDP+  PEA RA++LV+ VDRKLVKQT
Sbjct: 777  KDPAVFPEALRAKMLVDQVDRKLVKQT 803


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  955 bits (2469), Expect = 0.0
 Identities = 495/765 (64%), Positives = 574/765 (75%), Gaps = 24/765 (3%)
 Frame = -3

Query: 2225 MWRNVAKQLASSRKIGRFSKKTVFEGKIKSSELTKPENFGYLAVGCR-----------QI 2079
            MWRNVAKQ  S      FS+   F G  + S L +   FG L +  R           +I
Sbjct: 47   MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEI 106

Query: 2078 MTSHDIMGSKSLMGLRMD---CWRSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDE 1908
            +   D MG  S   L+ D   C R Y                    EIQ LL+EM KE +
Sbjct: 107  LNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEQQ 166

Query: 1907 KGGAIKIMSEGRRLAGITRGR---KYK----EQVRLETEAWDNAAKEYKELLADMCEQKL 1749
             GG       GR    + RG    KY+     QV++ETEAW+ AA EY+ELL DMCEQKL
Sbjct: 167  SGG-------GRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKL 219

Query: 1748 APNLPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMA 1569
            APNLPYMKSLFLGWFEPLR+AI  EQE  R  K++ AYAPY DQLPADM A+ITMHKLM 
Sbjct: 220  APNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMG 279

Query: 1568 LLMTGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTA--EGGESDAVAKE 1395
            LLMTGGEHG ARVVQAAC IG+AIEQEVRIH+FLE              EG ES+ V  E
Sbjct: 280  LLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTE 339

Query: 1394 NEKLRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVN 1215
             EKLRKKVT L+KKQKL  VR+IVKGQDD KPWGQDA+AK+GSR+IELL +TAYIQ P +
Sbjct: 340  QEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPAD 399

Query: 1214 QSAEGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXX 1035
            Q A+ PPDI PAF H+L+TVSK+ +  S++YGVIEC+PLV +GLE+TARH          
Sbjct: 400  QLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLV 459

Query: 1034 XPKRWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANW 855
             P +W+GYDKG + FLPSY+MRTHG+KQQR+ VK     QLEPVFEAL+TLGNT+WR N 
Sbjct: 460  PPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNN 519

Query: 854  RVLSVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQR 675
            RVLSV+D++W+ GGRLA LVDR+DVPLP +P+T+DE +   W+WK++  KKEN ERHSQR
Sbjct: 520  RVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQR 579

Query: 674  CDIELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK 495
            CDIELKL+VARKMKDE GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGK
Sbjct: 580  CDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGK 639

Query: 494  SGLRWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQC 315
            SGL WLKIHLANLYAGGVDKLS++GR++F ENH+D+IFDSADKPLEGRRWWL AEDPFQC
Sbjct: 640  SGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQC 699

Query: 314  LAACINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPAD 135
            LA CINL+EALRSSSPET+ISH+PVHQDGSCNGLQHYAALGRD LGAAAVNLV  +KPAD
Sbjct: 700  LAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPAD 759

Query: 134  VYSGIAARVLEIMQNDAKKDPS-DPEAFRARLLVNHVDRKLVKQT 3
            VYSGIAARVL I+Q DA++DP+  P+A RA+LL++ VDRKLVKQT
Sbjct: 760  VYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 804


>ref|XP_012491228.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial isoform X1 [Gossypium
            raimondii] gi|763775856|gb|KJB42979.1| hypothetical
            protein B456_007G178100 [Gossypium raimondii]
          Length = 1028

 Score =  953 bits (2463), Expect = 0.0
 Identities = 498/806 (61%), Positives = 588/806 (72%), Gaps = 37/806 (4%)
 Frame = -3

Query: 2309 TNLNRNFDFSISIERPRET-VNSKPKGVN--MWRNVAKQLASSRKIGRFSKKT------- 2160
            +NL   F +S      + T +   P  ++  MWRN+AK   S  +  ++  +T       
Sbjct: 11   SNLLYKFHYSSPFHNNKPTTLYQNPPRISRIMWRNIAKHAISRTRCSQWFPRTYSFLGVT 70

Query: 2159 ---VFEGKIKSSELTKPENFGYLAVGCRQIMTSHDIMGSKSLMG--------------LR 2031
               VF  K+K          G+L +G R+I    +++G++  MG              LR
Sbjct: 71   QDSVFPEKLKFGSFCSSS--GFLDMGGRKI---GEVLGNEDCMGKPNFGLLRNEIGCRLR 125

Query: 2030 MDCWRSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDEKGGAIKIMSEGRRLAGITR 1851
              C   Y                    EI+ LL EM KE  +    +     R++  I  
Sbjct: 126  GLCPNGYASVAEVASSTDVEDDVSAVEEIKELLNEMKKEHRRENINR-----RKILQIQE 180

Query: 1850 ----GRKYK----EQVRLETEAWDNAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFEPL 1695
                G KY+     QV++ETEAW+ AA EY+ELL DMCEQKLAPNLPYMKSLFLGWFEP 
Sbjct: 181  TGMGGNKYRMLKSRQVKIETEAWEQAANEYRELLKDMCEQKLAPNLPYMKSLFLGWFEPF 240

Query: 1694 RNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLMTGGEHGNARVVQAAC 1515
            R+AI+ EQEL+R GK R  YA Y+DQLPADM A+ITMHKLM LLMTGGEHG ARVVQAAC
Sbjct: 241  RDAIIKEQELYRSGKLRAGYAAYLDQLPADMAAVITMHKLMGLLMTGGEHGCARVVQAAC 300

Query: 1514 QIGEAIEQEVRIHRFLEXXXXXXXXXXTA-EGGESDAVAKENEKLRKKVTILMKKQKLQQ 1338
             IG+AIEQEVRI  FLE             EG ES+A  KE E+LRKKVT L+KKQKL  
Sbjct: 301  LIGDAIEQEVRIRNFLENTRKKKVDKEDEDEGSESNAAIKEQERLRKKVTNLIKKQKLPA 360

Query: 1337 VRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSAEGPPDIRPAFRHSLKT 1158
            VR+IVKGQD+ KPWGQDA+AK+G  LIELLM TAYIQPP +Q A+ PPDIRPAF HS KT
Sbjct: 361  VRQIVKGQDNTKPWGQDAKAKVGCHLIELLMRTAYIQPPADQLADTPPDIRPAFLHSFKT 420

Query: 1157 VSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPKRWSGYDKGGYLFLPSY 978
            V K+N+K+ RRYGVIECDPLVR+GLE+TARH           P +W+GYD+G YLFLPSY
Sbjct: 421  VVKENKKTGRRYGVIECDPLVRKGLERTARHMVIPYMPMLVPPVKWTGYDRGAYLFLPSY 480

Query: 977  IMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVLSVIDKLWASGGRLAGL 798
            IMRTHG+KQQREAVK   T QLE VFEAL+TLG T+WR N RVL+V+D++W SGGRLA +
Sbjct: 481  IMRTHGAKQQREAVKRTPTNQLEQVFEALDTLGYTKWRINKRVLNVVDRIWTSGGRLADM 540

Query: 797  VDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDIELKLAVARKMKDENGF 618
            VDR+DVP P +PDT+DE     W+WK+++ KKEN ERHSQRCDIELKLAVAR+MKDE GF
Sbjct: 541  VDRNDVPFPEKPDTEDEALLRKWKWKVRSVKKENRERHSQRCDIELKLAVARRMKDEEGF 600

Query: 617  YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVD 438
            YYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEFAEGRPLG+SGL WLKIHLANL+AGGVD
Sbjct: 601  YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGRSGLNWLKIHLANLFAGGVD 660

Query: 437  KLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETY 258
            KLS +GR++F ENH+D+IFDSAD+PLEG+RWWL AEDPFQCLA CINL+EALRSSSPET+
Sbjct: 661  KLSLEGRLAFTENHLDDIFDSADRPLEGKRWWLKAEDPFQCLAVCINLTEALRSSSPETF 720

Query: 257  ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYSGIAARVLEIMQNDAKK 78
            +SH+PVHQDGSCNGLQHYAALGRDKLGAAAVNLV G+KPADVYSGIA RVL+IM+ DA+K
Sbjct: 721  VSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAGRVLDIMRIDAQK 780

Query: 77   DPS-DPEAFRARLLVNHVDRKLVKQT 3
            DPS  P+A  A++LVN VDRKLVKQT
Sbjct: 781  DPSVFPDALLAKILVNQVDRKLVKQT 806


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score =  951 bits (2459), Expect = 0.0
 Identities = 474/653 (72%), Positives = 541/653 (82%), Gaps = 5/653 (0%)
 Frame = -3

Query: 1946 IQGLLKEMSKEDEKGGAIKIMSEGRRLAGITRGRKY----KEQVRLETEAWDNAAKEYKE 1779
            IQ L++EM+KE+E         + + + G+  G KY    + Q+++ETEAW++AAKEY+E
Sbjct: 124  IQELIEEMNKENEALKTNLQPKQPKTVGGMGIG-KYNLLRRRQIKVETEAWEDAAKEYQE 182

Query: 1778 LLADMCEQKLAPNLPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMT 1599
            LL DMCEQKLAPNLPY+KSLFLGWFEPLR+AI AEQ+L  +GKNRGAYAP+ DQLPA+M 
Sbjct: 183  LLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMM 242

Query: 1598 ALITMHKLMALLMTGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGG 1419
            A+ITMHKLM LLMTGG  G+ARVVQAA  IGEAIE E RIHRFLE            E  
Sbjct: 243  AVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEE-- 300

Query: 1418 ESDAVAKENEKLRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMET 1239
             +  + KE E+LRKKV ILMKKQKLQQVRKIVK QDD KPWGQD   K+G +LI++L+ET
Sbjct: 301  TAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILIET 360

Query: 1238 AYIQPPVNQSAEGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXX 1059
            AYIQPP +Q  + PPDIRPAF H+LKTV  +  K SRRYGVI+CDPLVR+GL+KTARH  
Sbjct: 361  AYIQPPNDQLDDCPPDIRPAFMHTLKTV--ETVKGSRRYGVIQCDPLVRKGLDKTARHMV 418

Query: 1058 XXXXXXXXXPKRWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLG 879
                     P+ WSGYD+G YLFLPSYIMRTHG+KQQREAVK     QLEPVF+AL+TLG
Sbjct: 419  IPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLG 478

Query: 878  NTRWRANWRVLSVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKE 699
            NT+WR N RVL ++D++WASGGRLA LVDR+DVPLP EPDT+DE E   W+WK+KAAKKE
Sbjct: 479  NTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVKAAKKE 538

Query: 698  NSERHSQRCDIELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 519
            N ERHSQRCDIELKLAVARKMKDE GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF
Sbjct: 539  NCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 598

Query: 518  AEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWL 339
            +EGRPLGKSGLRWLKIHLAN+Y GGVDKLSY+GR +F+ENH+++IFDSAD+PLEGRRWWL
Sbjct: 599  SEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSADRPLEGRRWWL 658

Query: 338  GAEDPFQCLAACINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNL 159
            GAEDPFQCLA CIN+SEALRS SPET ISHMP+HQDGSCNGLQHYAALGRDKLGAAAVNL
Sbjct: 659  GAEDPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNL 718

Query: 158  VNGDKPADVYSGIAARVLEIMQNDAKKDP-SDPEAFRARLLVNHVDRKLVKQT 3
            V GDKPADVYSGIAARVL+IM+ DA KDP +DP   RARLL+N VDRKLVKQT
Sbjct: 719  VAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQT 771


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533046|gb|ESR44229.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  951 bits (2458), Expect = 0.0
 Identities = 491/762 (64%), Positives = 573/762 (75%), Gaps = 21/762 (2%)
 Frame = -3

Query: 2225 MWRNVAKQLASSRKIGRFSKKTVFEGKIKSSELTKPENFGYLAVGCR-----------QI 2079
            MWRNVAKQ  S      FS+   F G  + S L +   FG L +  R           +I
Sbjct: 47   MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEI 106

Query: 2078 MTSHDIMGSKSLMGLRMD---CWRSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDE 1908
            +   D MG  S   L+ D   C R Y                    EIQ LL+EM KE++
Sbjct: 107  LNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQ 166

Query: 1907 KGGAIKIMSEGRRLAGITRGRKYK----EQVRLETEAWDNAAKEYKELLADMCEQKLAPN 1740
            + G        RR+A      KY+     QV++ETEAW+ AA EY+ELL DMCEQKLAPN
Sbjct: 167  REGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPN 226

Query: 1739 LPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLM 1560
            LPYMKSLFLGWFEPLR+AI  EQE  R  K++ AYAPY DQLPADM A+ITMHKLM LLM
Sbjct: 227  LPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLM 286

Query: 1559 TGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTA--EGGESDAVAKENEK 1386
            TGGEHG ARVVQAAC IG+AIEQEVRIH+FLE              EG ES+ V  E EK
Sbjct: 287  TGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEK 346

Query: 1385 LRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSA 1206
            LRKKVT L+KKQKL  VR+IVKGQDD KPWGQDA+AK+GSR+IELL +TAYIQ P +Q  
Sbjct: 347  LRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLV 406

Query: 1205 EGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPK 1026
            + PPDI PAF H+L+TVSK+ +  S++YGVIEC+PLV +GLE+TARH           P 
Sbjct: 407  DAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPV 466

Query: 1025 RWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVL 846
            +W+GYDKG + FLPSY+MRTHG+KQQR+ VK     QLEPVFEAL+TLGNT+WR N RVL
Sbjct: 467  KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL 526

Query: 845  SVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDI 666
            SV+D++W+ GGRLA LVDR+DVPLP +P+T+DE +   W+WK++  KKEN ERHSQRCDI
Sbjct: 527  SVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586

Query: 665  ELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL 486
            ELKL+VARKMKDE GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL
Sbjct: 587  ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646

Query: 485  RWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAA 306
             WLKIHLANLYAGGVDKLS++GR++F ENH+D+IFDSADKPLEGRRWWL AEDPFQCLA 
Sbjct: 647  HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706

Query: 305  CINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYS 126
            CINL+EALRSSSPET+ISH+PVHQDGSCNGLQHYAALGRD LGAAAVNLV  +KPADVYS
Sbjct: 707  CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766

Query: 125  GIAARVLEIMQNDAKKDPS-DPEAFRARLLVNHVDRKLVKQT 3
            GIAARVL I++ DA++DP+  P+A RA+LL++ VDRKLVKQT
Sbjct: 767  GIAARVLVIIRRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  951 bits (2458), Expect = 0.0
 Identities = 491/762 (64%), Positives = 573/762 (75%), Gaps = 21/762 (2%)
 Frame = -3

Query: 2225 MWRNVAKQLASSRKIGRFSKKTVFEGKIKSSELTKPENFGYLAVGCR-----------QI 2079
            MWRNVAKQ  S      FS+   F G  + S L +   FG L +  R           +I
Sbjct: 47   MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEI 106

Query: 2078 MTSHDIMGSKSLMGLRMD---CWRSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDE 1908
            +   D MG  S   L+ D   C R Y                    EIQ LL+EM KE++
Sbjct: 107  LNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQ 166

Query: 1907 KGGAIKIMSEGRRLAGITRGRKYK----EQVRLETEAWDNAAKEYKELLADMCEQKLAPN 1740
            + G        RR+A      KY+     QV++ETEAW+ AA EY+ELL DMCEQKLAPN
Sbjct: 167  REGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPN 226

Query: 1739 LPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLM 1560
            LPYMKSLFLGWFEPLR+AI  EQE  R  K++ AYAPY DQLPADM A+ITMHKLM LLM
Sbjct: 227  LPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLM 286

Query: 1559 TGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTA--EGGESDAVAKENEK 1386
            TGGEHG ARVVQAAC IG+AIEQEVRIH+FLE              EG ES+ V  E EK
Sbjct: 287  TGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEK 346

Query: 1385 LRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSA 1206
            LRKKVT L+KKQKL  VR+IVKGQDD KPWGQDA+AK+GSR+IELL +TAYIQ P +Q  
Sbjct: 347  LRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLV 406

Query: 1205 EGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPK 1026
            + PPDI PAF H+L+TVSK+ +  S++YGVIEC+PLV +GLE+TARH           P 
Sbjct: 407  DAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPV 466

Query: 1025 RWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVL 846
            +W+GYDKG + FLPSY+MRTHG+KQQR+ VK     QLEPVFEAL+TLGNT+WR N RVL
Sbjct: 467  KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL 526

Query: 845  SVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDI 666
            SV+D++W+ GGRLA LVDR+DVPLP +P+T+DE +   W+WK++  KKEN ERHSQRCDI
Sbjct: 527  SVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586

Query: 665  ELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL 486
            ELKL+VARKMKDE GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL
Sbjct: 587  ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646

Query: 485  RWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAA 306
             WLKIHLANLYAGGVDKLS++GR++F ENH+D+IFDSADKPLEGRRWWL AEDPFQCLA 
Sbjct: 647  HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706

Query: 305  CINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYS 126
            CINL+EALRSSSPET+ISH+PVHQDGSCNGLQHYAALGRD LGAAAVNLV  +KPADVYS
Sbjct: 707  CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766

Query: 125  GIAARVLEIMQNDAKKDPS-DPEAFRARLLVNHVDRKLVKQT 3
            GIAARVL I++ DA++DP+  P+A RA+LL++ VDRKLVKQT
Sbjct: 767  GIAARVLVIIRRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533044|gb|ESR44227.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  951 bits (2458), Expect = 0.0
 Identities = 491/762 (64%), Positives = 573/762 (75%), Gaps = 21/762 (2%)
 Frame = -3

Query: 2225 MWRNVAKQLASSRKIGRFSKKTVFEGKIKSSELTKPENFGYLAVGCR-----------QI 2079
            MWRNVAKQ  S      FS+   F G  + S L +   FG L +  R           +I
Sbjct: 47   MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEI 106

Query: 2078 MTSHDIMGSKSLMGLRMD---CWRSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDE 1908
            +   D MG  S   L+ D   C R Y                    EIQ LL+EM KE++
Sbjct: 107  LNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQ 166

Query: 1907 KGGAIKIMSEGRRLAGITRGRKYK----EQVRLETEAWDNAAKEYKELLADMCEQKLAPN 1740
            + G        RR+A      KY+     QV++ETEAW+ AA EY+ELL DMCEQKLAPN
Sbjct: 167  REGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPN 226

Query: 1739 LPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLM 1560
            LPYMKSLFLGWFEPLR+AI  EQE  R  K++ AYAPY DQLPADM A+ITMHKLM LLM
Sbjct: 227  LPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLM 286

Query: 1559 TGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTA--EGGESDAVAKENEK 1386
            TGGEHG ARVVQAAC IG+AIEQEVRIH+FLE              EG ES+ V  E EK
Sbjct: 287  TGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEK 346

Query: 1385 LRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSA 1206
            LRKKVT L+KKQKL  VR+IVKGQDD KPWGQDA+AK+GSR+IELL +TAYIQ P +Q  
Sbjct: 347  LRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLV 406

Query: 1205 EGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPK 1026
            + PPDI PAF H+L+TVSK+ +  S++YGVIEC+PLV +GLE+TARH           P 
Sbjct: 407  DAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPV 466

Query: 1025 RWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVL 846
            +W+GYDKG + FLPSY+MRTHG+KQQR+ VK     QLEPVFEAL+TLGNT+WR N RVL
Sbjct: 467  KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL 526

Query: 845  SVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDI 666
            SV+D++W+ GGRLA LVDR+DVPLP +P+T+DE +   W+WK++  KKEN ERHSQRCDI
Sbjct: 527  SVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586

Query: 665  ELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL 486
            ELKL+VARKMKDE GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL
Sbjct: 587  ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646

Query: 485  RWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAA 306
             WLKIHLANLYAGGVDKLS++GR++F ENH+D+IFDSADKPLEGRRWWL AEDPFQCLA 
Sbjct: 647  HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706

Query: 305  CINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYS 126
            CINL+EALRSSSPET+ISH+PVHQDGSCNGLQHYAALGRD LGAAAVNLV  +KPADVYS
Sbjct: 707  CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766

Query: 125  GIAARVLEIMQNDAKKDPS-DPEAFRARLLVNHVDRKLVKQT 3
            GIAARVL I++ DA++DP+  P+A RA+LL++ VDRKLVKQT
Sbjct: 767  GIAARVLVIIRRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808


>gb|KDO72326.1| hypothetical protein CISIN_1g036741mg [Citrus sinensis]
          Length = 1030

 Score =  951 bits (2457), Expect = 0.0
 Identities = 492/762 (64%), Positives = 572/762 (75%), Gaps = 21/762 (2%)
 Frame = -3

Query: 2225 MWRNVAKQLASSRKIGRFSKKTVFEGKIKSSELTKPENFGYLAVGCR-----------QI 2079
            MWRNVAKQ  S      FS+   F G  + S L     F  L +  R           +I
Sbjct: 47   MWRNVAKQAISLHLKKPFSRAYSFLGISQDSILRDKVKFVCLDMVPRGIHEVGSGRIGEI 106

Query: 2078 MTSHDIMGSKSLMGLRMD---CWRSYXXXXXXXXXXXXXXXXXXXXEIQGLLKEMSKEDE 1908
            +   D MG  S   L+ D   C R Y                    EIQ LL+EM KE++
Sbjct: 107  LNHEDYMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQ 166

Query: 1907 KGGAIKIMSEGRRLAGITRGRKYK----EQVRLETEAWDNAAKEYKELLADMCEQKLAPN 1740
            + G        RR+A      KY+     QV++ETEAW+ AA EY+ELL DMCEQKLAPN
Sbjct: 167  REGENGSGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPN 226

Query: 1739 LPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMHKLMALLM 1560
            LPYMKSLFLGWFEPLR+AI  EQE  R  K++ AYAPY DQLPADM A+ITMHKLM LLM
Sbjct: 227  LPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLM 286

Query: 1559 TGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTA--EGGESDAVAKENEK 1386
            TGGEHG ARVVQAAC IG+AIEQEVRIH+FLE              EG ES+ V  E EK
Sbjct: 287  TGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEK 346

Query: 1385 LRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPPVNQSA 1206
            LRKKVT L+KKQKL  VR+IVKGQDD KPWGQDA+AK+GSR+IELL +TAYIQ P +Q A
Sbjct: 347  LRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLA 406

Query: 1205 EGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXXXXXPK 1026
            + PPDI PAF H+L+TVSK+ +  S++YGVIEC+PLV +GLE+TARH           P 
Sbjct: 407  DAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPV 466

Query: 1025 RWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRANWRVL 846
            +W+GYDKG + FLPSY+MRTHG+KQQR+ VK     QLEPVFEAL+TLGNT+WR N RVL
Sbjct: 467  KWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVL 526

Query: 845  SVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHSQRCDI 666
            SV+D++W+ GGRLA LVDR+DVPLP +P+T+DE +   W+WK++  KKEN ERHSQRCDI
Sbjct: 527  SVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDI 586

Query: 665  ELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL 486
            ELKL+VARKMKDE GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGKSGL
Sbjct: 587  ELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGL 646

Query: 485  RWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPFQCLAA 306
             WLKIHLANLYAGGVDKLS++GR++F ENH+D+IFDSADKPLEGRRWWL AEDPFQCLA 
Sbjct: 647  HWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAV 706

Query: 305  CINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKPADVYS 126
            CINL+EALRSSSPET+ISH+PVHQDGSCNGLQHYAALGRD LGAAAVNLV  +KPADVYS
Sbjct: 707  CINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYS 766

Query: 125  GIAARVLEIMQNDAKKDPS-DPEAFRARLLVNHVDRKLVKQT 3
            GIAARVL I+Q DA++DP+  P+A RA+LL++ VDRKLVKQT
Sbjct: 767  GIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQT 808


>ref|XP_010943346.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial isoform X2 [Elaeis
            guineensis]
          Length = 1036

 Score =  948 bits (2451), Expect = 0.0
 Identities = 466/647 (72%), Positives = 532/647 (82%), Gaps = 5/647 (0%)
 Frame = -3

Query: 1928 EMSKEDEKGGAIKIMSEGRRLAGITRGRKY----KEQVRLETEAWDNAAKEYKELLADMC 1761
            ++S   EK        E ++++G+   +KY    + Q+++ETEAW+ AAKEYKELL DMC
Sbjct: 169  KLSDRSEKLPQKAQREEPKKVSGMG-AKKYAKLRQRQIKIETEAWEQAAKEYKELLQDMC 227

Query: 1760 EQKLAPNLPYMKSLFLGWFEPLRNAIVAEQELWRQGKNRGAYAPYIDQLPADMTALITMH 1581
            EQKLAPNLPY+KSL LGWFEP R+ I AEQE  R+ +NR AY PYI QLPADM A+ITMH
Sbjct: 228  EQKLAPNLPYVKSLLLGWFEPFRDKIAAEQEKCREVRNRAAYGPYIGQLPADMMAVITMH 287

Query: 1580 KLMALLMTGGEHGNARVVQAACQIGEAIEQEVRIHRFLEXXXXXXXXXXTAEGGESDAVA 1401
            KLM+LLMT G +G+  VVQAACQ+G AIEQEV+IHRFLE           +   E D + 
Sbjct: 288  KLMSLLMTSGSNGSVLVVQAACQVGSAIEQEVKIHRFLEKSKKKTNIDKKSGSAEVDNIT 347

Query: 1400 KENEKLRKKVTILMKKQKLQQVRKIVKGQDDLKPWGQDAQAKMGSRLIELLMETAYIQPP 1221
            KE E LRK+VT LMKKQKLQQVRKIVKGQDD KPWGQD QAK+GSRLIELL+ETAYIQPP
Sbjct: 348  KEQELLRKRVTNLMKKQKLQQVRKIVKGQDDSKPWGQDTQAKVGSRLIELLVETAYIQPP 407

Query: 1220 VNQSAEGPPDIRPAFRHSLKTVSKDNQKSSRRYGVIECDPLVRQGLEKTARHXXXXXXXX 1041
            +NQ A+ PPDIRPAFRH L+ V K+ +K SRRYG IECDPLVRQGL++TARH        
Sbjct: 408  INQLADSPPDIRPAFRHYLRNVQKEQKKISRRYGFIECDPLVRQGLDRTARHMVIPYMPM 467

Query: 1040 XXXPKRWSGYDKGGYLFLPSYIMRTHGSKQQREAVKWASTTQLEPVFEALNTLGNTRWRA 861
               P  W  YDKG +LFLPSY+MRTHGS+QQR AVK A   Q++ VFEAL+TLGNT+WR 
Sbjct: 468  LVPPISWQRYDKGAHLFLPSYVMRTHGSRQQRAAVKRAPREQMQLVFEALDTLGNTKWRV 527

Query: 860  NWRVLSVIDKLWASGGRLAGLVDRDDVPLPVEPDTDDETERNAWRWKLKAAKKENSERHS 681
            N RVL+++D++W+SGGRLA LVDRDD PLP +P+T+D  E   W+WKLKA KKENSERHS
Sbjct: 528  NKRVLNIVDRIWSSGGRLANLVDRDDNPLPEKPETEDGAEIRKWKWKLKAVKKENSERHS 587

Query: 680  QRCDIELKLAVARKMKDENGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL 501
            QRCD+E+KLAVARKMKDE GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL
Sbjct: 588  QRCDVEIKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL 647

Query: 500  GKSGLRWLKIHLANLYAGGVDKLSYDGRISFAENHIDNIFDSADKPLEGRRWWLGAEDPF 321
            GKSGL WLKIHLANLYAGGVDKLSYDGRI+F ENH+D+IFDSAD+PLEGRRWWLGAEDPF
Sbjct: 648  GKSGLHWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 707

Query: 320  QCLAACINLSEALRSSSPETYISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVNGDKP 141
            QCLA CINL+EALRSSSPE+ ISH+PVHQDGSCNGLQHYAALGRDKLGA +VNLV G+KP
Sbjct: 708  QCLAVCINLAEALRSSSPESTISHIPVHQDGSCNGLQHYAALGRDKLGAISVNLVAGEKP 767

Query: 140  ADVYSGIAARVLEIMQNDAKKDPS-DPEAFRARLLVNHVDRKLVKQT 3
            ADVYSGIAARV EIMQ DA+KDP+ DP A  ARLL+N VDRKLVKQT
Sbjct: 768  ADVYSGIAARVREIMQKDAQKDPAMDPNASHARLLINQVDRKLVKQT 814