BLASTX nr result
ID: Aconitum23_contig00017302
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum23_contig00017302
(1852 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su... 486 e-134
ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV su... 479 e-132
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun... 445 e-122
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su... 442 e-121
ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV su... 439 e-120
ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV su... 439 e-120
ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV su... 439 e-120
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su... 439 e-120
ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su... 438 e-120
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su... 438 e-120
ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 437 e-119
emb|CDP09818.1| unnamed protein product [Coffea canephora] 428 e-117
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 428 e-117
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 423 e-115
ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV su... 422 e-115
ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV su... 422 e-115
ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV su... 421 e-115
ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV su... 419 e-114
ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV su... 419 e-114
ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV su... 419 e-114
>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nelumbo nucifera]
Length = 1489
Score = 486 bits (1251), Expect = e-134
Identities = 265/543 (48%), Positives = 352/543 (64%), Gaps = 39/543 (7%)
Frame = -3
Query: 1850 QKKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPT 1671
QK + +QTASLFLSK+L RW+ G EYGA +VKNHLERVFFSD+VSTVM+I F P
Sbjct: 941 QKNASADQTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVI-----FSPQ 995
Query: 1670 HKSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTL-----GQECQSIVENL- 1509
S+ + PW HFH+CKE ++RRGLN+Q II L G++ + + N+
Sbjct: 996 RHSQMSAS--------PWVCHFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNIL 1047
Query: 1508 --------------KIDLATLKILNGSCADAQKEKDG-ALCITLAAEVPLGSPMLMDIFR 1374
KI L L IL+ C + ++G CI + E+ S +D R
Sbjct: 1048 NELRKKYKLSGKQVKIKLPNLMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQLDTVR 1107
Query: 1373 DSVIPSLLGTVIRGFLEFKKVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNL 1194
D V+P L TVI+GFLEFK VDILWND +SKS S GELY+KV SE C+ K W+
Sbjct: 1108 DLVVPFLSRTVIKGFLEFKSVDILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSS 1167
Query: 1193 LMSKCLHIMDLIDWERSYPDNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLL 1014
L + CL +MDLIDWERSYPDNI ++ ++GI+ FL SLK A SDIGK +L +HLLL
Sbjct: 1168 LQNACLPVMDLIDWERSYPDNIYNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLL 1227
Query: 1013 VADCLSATGEFVGLNAKGIEKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVL 834
VA+ LS TGEF+GL+AKGI++Q D A VSSPF QACFSNP +CFIKAAKE D L G+L
Sbjct: 1228 VANSLSFTGEFLGLSAKGIKRQMDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGIL 1287
Query: 833 DAAAWGKEIPLGTGGQFNILYSGKGHEVSKPVDIFNKL-----------SGPLCSNLKVV 687
D+ +WGK++P+GTGG F+ILYSGKG +KP +I++ L L + V
Sbjct: 1288 DSVSWGKKVPIGTGGHFDILYSGKGFTPAKPTNIYSALCHESKSHGENVETGLTDACRKV 1347
Query: 686 SEIWRERS------PIRK-EQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELL 528
W ++S P+ K + +L SS+++ ++S E + K++ SL+ ILH +Y +N+ L
Sbjct: 1348 CCKWEKQSFYASKDPLPKGDSSENLPSSVLRSIYSREDVLKLNSSLKHILH-KYPINDYL 1406
Query: 527 SESDKSKLIGALNFHPRKDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKC 348
SE DKS L+ AL FHP++++K+GTG +DIKVG H EHQ+SRCF ++R DG++EDFSY KC
Sbjct: 1407 SEVDKSILLRALYFHPKRNQKMGTGPKDIKVGYHSEHQQSRCFMLVRTDGTIEDFSYRKC 1466
Query: 347 ISG 339
I G
Sbjct: 1467 ILG 1469
>ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Nelumbo nucifera]
Length = 1373
Score = 479 bits (1234), Expect = e-132
Identities = 265/549 (48%), Positives = 352/549 (64%), Gaps = 45/549 (8%)
Frame = -3
Query: 1850 QKKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPT 1671
QK + +QTASLFLSK+L RW+ G EYGA +VKNHLERVFFSD+VSTVM+I F P
Sbjct: 819 QKNASADQTASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVI-----FSPQ 873
Query: 1670 HKSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTL-----GQECQSIVENL- 1509
S+ + PW HFH+CKE ++RRGLN+Q II L G++ + + N+
Sbjct: 874 RHSQMSAS--------PWVCHFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNIL 925
Query: 1508 --------------KIDLATLKILNGSCADAQKEKDG-ALCITLAAEVPLGSPMLMDIFR 1374
KI L L IL+ C + ++G CI + E+ S +D R
Sbjct: 926 NELRKKYKLSGKQVKIKLPNLMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQLDTVR 985
Query: 1373 DSVIPSLLGTVIRGFLEFKKVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNL 1194
D V+P L TVI+GFLEFK VDILWND +SKS S GELY+KV SE C+ K W+
Sbjct: 986 DLVVPFLSRTVIKGFLEFKSVDILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSS 1045
Query: 1193 LMSKCLHIMDLIDWERSYPDNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLL 1014
L + CL +MDLIDWERSYPDNI ++ ++GI+ FL SLK A SDIGK +L +HLLL
Sbjct: 1046 LQNACLPVMDLIDWERSYPDNIYNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLL 1105
Query: 1013 VADCLSATGEFVGLNAKGIEKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVL 834
VA+ LS TGEF+GL+AKGI++Q D A VSSPF QACFSNP +CFIKAAKE D L G+L
Sbjct: 1106 VANSLSFTGEFLGLSAKGIKRQMDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGIL 1165
Query: 833 DAAAWGKEIPLGTGGQFNILYSGKGHEVSKPVDIFNKL-----------SGPLCSNLKVV 687
D+ +WGK++P+GTGG F+ILYSGKG +KP +I++ L L + V
Sbjct: 1166 DSVSWGKKVPIGTGGHFDILYSGKGFTPAKPTNIYSALCHESKSHGENVETGLTDACRKV 1225
Query: 686 SEIWRERS------PIRK-EQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELL 528
W ++S P+ K + +L SS+++ ++S E + K++ SL+ ILH +Y +N+ L
Sbjct: 1226 CCKWEKQSFYASKDPLPKGDSSENLPSSVLRSIYSREDVLKLNSSLKHILH-KYPINDYL 1284
Query: 527 SESDKSKLIGALNFHPRKDEKIGTGIQDIK------VGKHPEHQKSRCFFVIRKDGSVED 366
SE DKS L+ AL FHP++++K+GTG +DIK VG H EHQ+SRCF ++R DG++ED
Sbjct: 1285 SEVDKSILLRALYFHPKRNQKMGTGPKDIKVLPRIRVGYHSEHQQSRCFMLVRTDGTIED 1344
Query: 365 FSYNKCISG 339
FSY KCI G
Sbjct: 1345 FSYRKCILG 1353
>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
gi|462406650|gb|EMJ12114.1| hypothetical protein
PRUPE_ppa000278mg [Prunus persica]
Length = 1356
Score = 445 bits (1145), Expect = e-122
Identities = 249/515 (48%), Positives = 331/515 (64%), Gaps = 12/515 (2%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
KK++ QT SLFLSK+L R +G EYGA++VKNHL + FSDIVSTVMII
Sbjct: 833 KKSSAKQTLSLFLSKKLGRRRHGFEYGALEVKNHLVGLTFSDIVSTVMII---------F 883
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S+ N S PW HFH+CKE +++R L V ++ +L C S LKI L +L
Sbjct: 884 SSQSN----SQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPELKIVLRSL 939
Query: 1487 KILNGSCADAQ--KEKDGALCITLAA-EVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
I + C+ AQ D CIT+ E S +DI RD VIP LLGTV++GFLE K
Sbjct: 940 LITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEVK 999
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
KVDILWND SK + S GELY++V+ S + W++LM CL IMDLIDW RS+P
Sbjct: 1000 KVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMDLIDWSRSHP 1059
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
DN+ D ++GI+ FL +L+ AA+DIGK ILP+HL+LVADCLSATGEFVGLNAKGI
Sbjct: 1060 DNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAKGI 1119
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
+Q+ VSSPF QACFS+P +CFIKAAK D L G ++A AWG P GTG QF+I
Sbjct: 1120 AQQKGHTSVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDI 1179
Query: 776 LYSGKGHEVSKPVDIFNKLSGPLCS---NLKVVSEIWR------ERSPIRKEQQSSLASS 624
LYS +G +SKP++ ++ L + S N S+ W + + I E+ S+ S
Sbjct: 1180 LYSKEGLNLSKPLNPYDLLGSQISSSRENAFETSKAWNNTLDKCDVTSIGLEKSESVFKS 1239
Query: 623 IVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKDEKIGTGIQD 444
+++ ++ IQK +L+RIL +Y +NE L+E DKS L AL+FHP K +K+G+G+QD
Sbjct: 1240 VIRKYLTINDIQKWTQTLKRIL-RKYDINESLTEGDKSILKMALHFHPHKVDKMGSGVQD 1298
Query: 443 IKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
IKVG+HP+H+ +RCF ++R D + EDFSY+KC+ G
Sbjct: 1299 IKVGQHPKHENARCFMLVRIDRTEEDFSYHKCVLG 1333
>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
vinifera]
Length = 1458
Score = 442 bits (1137), Expect = e-121
Identities = 247/524 (47%), Positives = 327/524 (62%), Gaps = 21/524 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
+K+ ++T SLFLSK+L + +G EYGA++VKNHLE++ FSDIVSTVMI+ F P +
Sbjct: 928 RKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIV-----FSPQN 982
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
SK +H PW HFH+C+E K+R L II L +C S KI+L L
Sbjct: 983 GSK--------THFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDL 1034
Query: 1487 KILNGSC-ADAQKEKDGALCITLAAEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKKV 1311
+I + C D +KE CIT++ S + +D RD VIP LLG V++G L+ KKV
Sbjct: 1035 QITSKDCFVDMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKV 1094
Query: 1310 DILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPDN 1131
DILWND + ++ S G LY++V S C W +LM CL IMD+IDWERS+PDN
Sbjct: 1095 DILWNDNPDSDVLKS-SSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDN 1153
Query: 1130 IPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIEK 951
I D++ +GI+ FL SLK A SDIGK +LP+HLLLVA CLSATGEFVGLNAKG+ +
Sbjct: 1154 IHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMAR 1213
Query: 950 QRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNILY 771
Q++L +SSPF Q CFS+P SCFIKA K D L G LDA AWGK +G+GG F+ILY
Sbjct: 1214 QKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILY 1273
Query: 770 SGKGHEVSKPVDIFNKLSGPLCS----NLKVVSEIWRERSPIRKEQQ------------- 642
S KGHE+++P DI+ KL G S NLKV I ++ + Q
Sbjct: 1274 SAKGHELARPEDIY-KLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGC 1332
Query: 641 ---SSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKD 471
++ S+++ SL IQK+ L+ IL +Y +N LSE DK+ L+ AL FHPR+D
Sbjct: 1333 KSLEKISKSVLRSFLSLNDIQKLSRRLKFIL-QKYPINHQLSEIDKTTLMMALYFHPRRD 1391
Query: 470 EKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
EKIG G Q+IKV H ++ +RCF ++R DG+ EDFSY+KC+ G
Sbjct: 1392 EKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHG 1435
>ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324654|ref|XP_010053344.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324662|ref|XP_010053345.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324668|ref|XP_010053346.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324674|ref|XP_010053347.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324680|ref|XP_010053348.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324687|ref|XP_010053349.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|629112658|gb|KCW77618.1| hypothetical protein
EUGRSUZ_D01929 [Eucalyptus grandis]
Length = 1473
Score = 439 bits (1129), Expect = e-120
Identities = 242/526 (46%), Positives = 334/526 (63%), Gaps = 23/526 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
KK+ QT SLFLSK+LA+ +G+EYGA+ VK+HLER+FFSDIVST MII F P +
Sbjct: 938 KKSNSCQTMSLFLSKQLAKHRHGLEYGALAVKDHLERMFFSDIVSTTMII-----FSPEN 992
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
+++ PW HFH+ K+ + RRGL + +I +L + C + ++ L++DL L
Sbjct: 993 YNQN---------LSPWVCHFHIRKDIITRRGLILHSVIGSLKRRCHAFLKELRVDLPPL 1043
Query: 1487 KILNGSCADAQKEKDGA---LCITLA----AEVPLGSPMLMDIFRDSVIPSLLGTVIRGF 1329
+I C+ +E++ A CITL ++ P L+ ++ VIP LL TVI+GF
Sbjct: 1044 QITINDCSLTGEEREDAANIFCITLTMVEESKKVATQPTLLKKLQEHVIPCLLETVIKGF 1103
Query: 1328 LEFKKVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWE 1149
+E KKVDILW++ SKS+ VS GELY++V+ S + K W++LM+ C+ IMD IDW
Sbjct: 1104 MEIKKVDILWSESGKLSKSKPVSTGELYLRVSMSAHSEKMKLWSVLMNNCVPIMDAIDWS 1163
Query: 1148 RSYPDNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLN 969
RS+PDNI + + GI+ FL SL A SD GK +LP+HL+L+A+CLS +GEFVGLN
Sbjct: 1164 RSHPDNIREFSLANGIDAGWKYFLNSLGSAVSDTGKTVLPEHLVLLANCLSTSGEFVGLN 1223
Query: 968 AKGIEKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGG 789
KG+ +QR+++ V+SPF QACFSNP CFIKAAK T D L G LDA AWGK LGTGG
Sbjct: 1224 PKGMSRQREISSVASPFVQACFSNPGPCFIKAAKAGTVDSLQGSLDALAWGKVPSLGTGG 1283
Query: 788 QFNILYSGKGHEVSKPVDIFNKLSGPLCS---NLKVVSEIWRERSPIRKEQQSSLASSIV 618
F I+YSGKGHE++KP ++N L + S N+K+ P + A S+
Sbjct: 1284 LFEIIYSGKGHELAKPESVYNLLGNKVSSTQQNIKLEVPNAGSHVPDTCGAEFVQADSVS 1343
Query: 617 KGVHSLEA-------------IQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPR 477
K + LE IQK+ + L++IL+ +Y ++ L E +KS ++ AL FHPR
Sbjct: 1344 KVLKKLEINKSLFRKFITFNDIQKLSLELKKILY-KYPIDHHLGEQEKSIVMMALKFHPR 1402
Query: 476 KDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
EKIGTG ++IKVG HP+HQ SRCF ++R DG EDFSY+KC+ G
Sbjct: 1403 GKEKIGTGARNIKVGHHPKHQDSRCFMLVRDDGMAEDFSYHKCVLG 1448
>ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
[Cucumis sativus]
Length = 1361
Score = 439 bits (1128), Expect = e-120
Identities = 247/524 (47%), Positives = 333/524 (63%), Gaps = 21/524 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K+ + QT SLFLS++L++ YG EYGA+ VKNHLERV F DIVS+VMII +P + H
Sbjct: 831 KRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKH 890
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S PW HFH+CKE LK+R L + +I +L C S+ + +++L +L
Sbjct: 891 FS-------------PWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSL 937
Query: 1487 KILNGSC--ADAQKEKDGALCITLA-AEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
+I+ C AD+ E +C+T+ AE S + +D +D +I LLGTVIRGF E
Sbjct: 938 QIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEID 997
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
+VDI WND+ K S GELY++V S S + W LM+ CL IMDLIDW RS+P
Sbjct: 998 RVDITWNDRPKVPKPR-CSHGELYLRVTMSGEGNS-RFWATLMNNCLPIMDLIDWTRSHP 1055
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
DN + ++GI+ FL SL+ A D+GK I +HLLLV++ LSATGEFVGLN KG+
Sbjct: 1056 DNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGL 1115
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
QR+ A V +PF QACFS+P +C IKAAK +D L G LDA AWG+ LGTGGQF+I
Sbjct: 1116 THQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDI 1175
Query: 776 LYSGKGHEVSKPVDIFNKLSGPLC---SNLKV-------VSEIWRERSPIRK-------- 651
LYSGKGHE++KPVD++N L G N K+ +SE + + ++
Sbjct: 1176 LYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISEKYSAQLMLKNGGSTIKGL 1235
Query: 650 EQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKD 471
++ S++ SI++ +L IQK+ +LR ILH +YS+NE L+E DKS L+ AL FHP +D
Sbjct: 1236 KRLDSVSKSILRKFLTLNDIQKLSFALRTILH-KYSLNERLNEVDKSTLMMALYFHPHRD 1294
Query: 470 EKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
EKIG G QDIKVG H ++Q +RCF +IR DG+ EDFSY+KC+ G
Sbjct: 1295 EKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLG 1338
>ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Cucumis sativus]
Length = 1362
Score = 439 bits (1128), Expect = e-120
Identities = 247/524 (47%), Positives = 333/524 (63%), Gaps = 21/524 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K+ + QT SLFLS++L++ YG EYGA+ VKNHLERV F DIVS+VMII +P + H
Sbjct: 832 KRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKH 891
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S PW HFH+CKE LK+R L + +I +L C S+ + +++L +L
Sbjct: 892 FS-------------PWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSL 938
Query: 1487 KILNGSC--ADAQKEKDGALCITLA-AEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
+I+ C AD+ E +C+T+ AE S + +D +D +I LLGTVIRGF E
Sbjct: 939 QIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEID 998
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
+VDI WND+ K S GELY++V S S + W LM+ CL IMDLIDW RS+P
Sbjct: 999 RVDITWNDRPKVPKPR-CSHGELYLRVTMSGEGNS-RFWATLMNNCLPIMDLIDWTRSHP 1056
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
DN + ++GI+ FL SL+ A D+GK I +HLLLV++ LSATGEFVGLN KG+
Sbjct: 1057 DNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGL 1116
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
QR+ A V +PF QACFS+P +C IKAAK +D L G LDA AWG+ LGTGGQF+I
Sbjct: 1117 THQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDI 1176
Query: 776 LYSGKGHEVSKPVDIFNKLSGPLC---SNLKV-------VSEIWRERSPIRK-------- 651
LYSGKGHE++KPVD++N L G N K+ +SE + + ++
Sbjct: 1177 LYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISEKYSAQLMLKNGGSTIKGL 1236
Query: 650 EQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKD 471
++ S++ SI++ +L IQK+ +LR ILH +YS+NE L+E DKS L+ AL FHP +D
Sbjct: 1237 KRLDSVSKSILRKFLTLNDIQKLSFALRTILH-KYSLNERLNEVDKSTLMMALYFHPHRD 1295
Query: 470 EKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
EKIG G QDIKVG H ++Q +RCF +IR DG+ EDFSY+KC+ G
Sbjct: 1296 EKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLG 1339
>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Cucumis sativus] gi|778675671|ref|XP_011650448.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Cucumis sativus]
gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
gi|700200830|gb|KGN55963.1| hypothetical protein
Csa_3G039340 [Cucumis sativus]
Length = 1483
Score = 439 bits (1128), Expect = e-120
Identities = 247/524 (47%), Positives = 333/524 (63%), Gaps = 21/524 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K+ + QT SLFLS++L++ YG EYGA+ VKNHLERV F DIVS+VMII +P + H
Sbjct: 953 KRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKH 1012
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S PW HFH+CKE LK+R L + +I +L C S+ + +++L +L
Sbjct: 1013 FS-------------PWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSL 1059
Query: 1487 KILNGSC--ADAQKEKDGALCITLA-AEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
+I+ C AD+ E +C+T+ AE S + +D +D +I LLGTVIRGF E
Sbjct: 1060 QIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEID 1119
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
+VDI WND+ K S GELY++V S S + W LM+ CL IMDLIDW RS+P
Sbjct: 1120 RVDITWNDRPKVPKPR-CSHGELYLRVTMSGEGNS-RFWATLMNNCLPIMDLIDWTRSHP 1177
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
DN + ++GI+ FL SL+ A D+GK I +HLLLV++ LSATGEFVGLN KG+
Sbjct: 1178 DNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGL 1237
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
QR+ A V +PF QACFS+P +C IKAAK +D L G LDA AWG+ LGTGGQF+I
Sbjct: 1238 THQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDI 1297
Query: 776 LYSGKGHEVSKPVDIFNKLSGPLC---SNLKV-------VSEIWRERSPIRK-------- 651
LYSGKGHE++KPVD++N L G N K+ +SE + + ++
Sbjct: 1298 LYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISEKYSAQLMLKNGGSTIKGL 1357
Query: 650 EQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKD 471
++ S++ SI++ +L IQK+ +LR ILH +YS+NE L+E DKS L+ AL FHP +D
Sbjct: 1358 KRLDSVSKSILRKFLTLNDIQKLSFALRTILH-KYSLNERLNEVDKSTLMMALYFHPHRD 1416
Query: 470 EKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
EKIG G QDIKVG H ++Q +RCF +IR DG+ EDFSY+KC+ G
Sbjct: 1417 EKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLG 1460
>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Vitis
vinifera]
Length = 1354
Score = 438 bits (1126), Expect = e-120
Identities = 246/526 (46%), Positives = 326/526 (61%), Gaps = 23/526 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
+K+ ++T SLFLSK+L + +G EYGA++VKNHLE++ FSDIVSTVMI+ F P +
Sbjct: 822 RKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIV-----FSPQN 876
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
SK +H PW HFH+C+E K+R L II L +C S KI+L L
Sbjct: 877 GSK--------THFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDL 928
Query: 1487 KILNGS---CADAQKEKDGALCITLAAEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
+I + D +KE CIT++ S + +D RD VIP LLG V++G L+ K
Sbjct: 929 QITSNGRDCFVDMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVK 988
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
KVDILWND + ++ S G LY++V S C W +LM CL IMD+IDWERS+P
Sbjct: 989 KVDILWNDNPDSDVLKS-SSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHP 1047
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
DNI D++ +GI+ FL SLK A SDIGK +LP+HLLLVA CLSATGEFVGLNAKG+
Sbjct: 1048 DNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGM 1107
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
+Q++L +SSPF Q CFS+P SCFIKA K D L G LDA AWGK +G+GG F+I
Sbjct: 1108 ARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDI 1167
Query: 776 LYSGKGHEVSKPVDIFNKLSGPLCS----NLKVVSEIWRERSPIRKEQQ----------- 642
LYS KGHE+++P DI+ KL G S NLKV I ++ + Q
Sbjct: 1168 LYSAKGHELARPEDIY-KLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASK 1226
Query: 641 -----SSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPR 477
++ S+++ SL IQK+ L+ IL +Y +N LSE DK+ L+ AL FHPR
Sbjct: 1227 GCKSLEKISKSVLRSFLSLNDIQKLSRRLKFIL-QKYPINHQLSEIDKTTLMMALYFHPR 1285
Query: 476 KDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
+DEKIG G Q+IKV H ++ +RCF ++R DG+ EDFSY+KC+ G
Sbjct: 1286 RDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHG 1331
>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
vinifera]
Length = 1460
Score = 438 bits (1126), Expect = e-120
Identities = 246/526 (46%), Positives = 326/526 (61%), Gaps = 23/526 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
+K+ ++T SLFLSK+L + +G EYGA++VKNHLE++ FSDIVSTVMI+ F P +
Sbjct: 928 RKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIV-----FSPQN 982
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
SK +H PW HFH+C+E K+R L II L +C S KI+L L
Sbjct: 983 GSK--------THFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDL 1034
Query: 1487 KILNGS---CADAQKEKDGALCITLAAEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
+I + D +KE CIT++ S + +D RD VIP LLG V++G L+ K
Sbjct: 1035 QITSNGRDCFVDMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVK 1094
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
KVDILWND + ++ S G LY++V S C W +LM CL IMD+IDWERS+P
Sbjct: 1095 KVDILWNDNPDSDVLKS-SSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHP 1153
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
DNI D++ +GI+ FL SLK A SDIGK +LP+HLLLVA CLSATGEFVGLNAKG+
Sbjct: 1154 DNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGM 1213
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
+Q++L +SSPF Q CFS+P SCFIKA K D L G LDA AWGK +G+GG F+I
Sbjct: 1214 ARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDI 1273
Query: 776 LYSGKGHEVSKPVDIFNKLSGPLCS----NLKVVSEIWRERSPIRKEQQ----------- 642
LYS KGHE+++P DI+ KL G S NLKV I ++ + Q
Sbjct: 1274 LYSAKGHELARPEDIY-KLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASK 1332
Query: 641 -----SSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPR 477
++ S+++ SL IQK+ L+ IL +Y +N LSE DK+ L+ AL FHPR
Sbjct: 1333 GCKSLEKISKSVLRSFLSLNDIQKLSRRLKFIL-QKYPINHQLSEIDKTTLMMALYFHPR 1391
Query: 476 KDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
+DEKIG G Q+IKV H ++ +RCF ++R DG+ EDFSY+KC+ G
Sbjct: 1392 RDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHG 1437
>ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Cucumis melo]
Length = 1489
Score = 437 bits (1124), Expect = e-119
Identities = 248/524 (47%), Positives = 332/524 (63%), Gaps = 21/524 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K+ + QT SLFLS++L++ YG EYGA+ VKNHLERV F DIVS+VMII F P
Sbjct: 959 KRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMII-----FSPQP 1013
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
K H PW HFH+CK+ LK+R L + +I +L C S+ + +++L +L
Sbjct: 1014 SRK--------KHFSPWVCHFHVCKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSL 1065
Query: 1487 KILNGSC--ADAQKEKDGALCITLA-AEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
+I+ C AD+ E +C+T+ AE S + +D +D +I LLGTVIRGF E
Sbjct: 1066 QIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEID 1125
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
+VDI WND+ K S GELY++V S S + W L++ CL IMDLIDW RS+P
Sbjct: 1126 RVDITWNDRPKVPKPR-CSHGELYLRVTMSGEGNS-RFWATLINNCLPIMDLIDWTRSHP 1183
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
DN + ++GI+ FL SL+ A DIGK I +HLLLVA+ LSATGEFVGLN KG+
Sbjct: 1184 DNTHSLCLAYGIDSGWKYFLNSLECATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGL 1243
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
QR+ A V +PF QACFS+P +C IKAAK +D L G LDA AWG+ LGTGGQF+I
Sbjct: 1244 THQREHALVKTPFMQACFSSPGACLIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDI 1303
Query: 776 LYSGKGHEVSKPVDIFNKLSGPLC---SNLKV-------VSEIWRERSPIRK-------- 651
LYSGKGHE++KPVD++N L G N K+ +SE + + ++
Sbjct: 1304 LYSGKGHELNKPVDVYNLLGGQSTCEKQNAKIESVDKNNISEKYSAQLVLKNGGSTIKGL 1363
Query: 650 EQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKD 471
++ S++ SI++ +L IQK+ +LR ILH +YS+NE L+E DKS L+ AL FHP +D
Sbjct: 1364 KRLDSVSKSILRKFLTLNDIQKLSFALRTILH-KYSLNERLNEVDKSTLMMALYFHPHRD 1422
Query: 470 EKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
EKIG G QDIKVG H ++Q +RCF +IR DG+ EDFSY+KC+ G
Sbjct: 1423 EKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLG 1466
>emb|CDP09818.1| unnamed protein product [Coffea canephora]
Length = 1511
Score = 428 bits (1101), Expect = e-117
Identities = 240/523 (45%), Positives = 329/523 (62%), Gaps = 22/523 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
KK++ ++TAS+FL K+L R YG+EYGA++VK+HLER+ D+VS+ MI K
Sbjct: 972 KKSSGDKTASIFLCKKLGRQTYGLEYGALEVKDHLERLMLEDVVSSSMISYSK------- 1024
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S S PW HFH+ KE +KR+ L VQ II L +S LKI+L L
Sbjct: 1025 ------EKCSRSQISPWICHFHISKEIIKRKRLRVQSIIDALNMAWRSAKVKLKINLPDL 1078
Query: 1487 KILNGSCADA--QKEKDGALCITLAA-EVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
+I +C+ A Q EKD +C+T++ E S + +DI R+ V+P LLGTVI+GF EFK
Sbjct: 1079 QITGKACSLALKQNEKDTKICLTVSILEKSKKSSLRLDILRNMVMPFLLGTVIKGFPEFK 1138
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
KVDI+W D +SKS S G +Y++V SE C K W++L+ CL I DLIDWERS+P
Sbjct: 1139 KVDIMWKDCRNSSKSSKGSLGGVYLRVFMSEKCDRTKFWSVLVDNCLRIRDLIDWERSHP 1198
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
D+I D+ ++GI+ A + FL+SL A SD GK ILP+HL+L ADCLSATGEFV LNAKG+
Sbjct: 1199 DDIHDMAPAYGIDAAVNHFLSSLNSAISDTGKTILPEHLVLTADCLSATGEFVALNAKGL 1258
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
+QR VSSPF QACFS+P CF++AAK D L G +DA AWG +GTG +F+I
Sbjct: 1259 AQQRKETAVSSPFLQACFSSPGDCFVRAAKTGIVDNLQGTVDALAWGMVPSIGTGARFDI 1318
Query: 776 LYSGKGHEVSKPVDIFNKLSGPLCSNLKVVSEIWRERSPIRKEQQSS------------- 636
+YSGKGHE +K +D+++ L + N +V + P + + S
Sbjct: 1319 IYSGKGHEPAKSIDVYDLLGSIVNLNQQV-------KFPNKDYEMSGKSIVQHLFAYDDL 1371
Query: 635 ------LASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRK 474
L ++++ SL+ IQK+ SL+ +L N+Y V+ LSE DK+ ++ AL+FHPR
Sbjct: 1372 ATKGCILPRTLLRNFFSLKDIQKLSHSLKHML-NKYDVDCQLSEIDKTIVMAALSFHPRS 1430
Query: 473 DEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCI 345
EKIG G +IKVG H E+ SRCF ++RKDG+V DFSY+KC+
Sbjct: 1431 SEKIGIGAHEIKVGYHSEYDNSRCFVLVRKDGTVADFSYHKCV 1473
>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Prunus mume]
Length = 1452
Score = 428 bits (1101), Expect = e-117
Identities = 244/518 (47%), Positives = 328/518 (63%), Gaps = 15/518 (2%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
KK++ QT SLFLS++L R +G EYGA++VKNHL + FSDIVSTVMII
Sbjct: 926 KKSSAKQTMSLFLSEKLGRRRHGFEYGALEVKNHLVGLTFSDIVSTVMIIF--------- 976
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S N FS PW HFH+CKE +++R L V ++ +L C S LK+ L +L
Sbjct: 977 -SSQNNSQKRFS---PWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPELKVVLRSL 1032
Query: 1487 KILNGSCADAQ--KEKDGALCITLAA-EVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
I + C+ AQ D CIT+ E S +DI RD VIP LLGTV++GFLE K
Sbjct: 1033 LITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEVK 1092
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
KVDILWND SK + S GELY++V+ S + W++LM CL IM+LIDW RS+P
Sbjct: 1093 KVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMNLIDWSRSHP 1152
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
DN+ D ++GI+ FL +L+ AA+DIGK ILP+HL+LVADCLSATGEFVGLNAKGI
Sbjct: 1153 DNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAKGI 1212
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
+Q+ A VSSPF QACFS+P +CFIKAAK D L G ++A AWG P GTG QF+I
Sbjct: 1213 AQQKGHASVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDI 1272
Query: 776 LYSGKGHEVSKPVDIFNKLSGPLCS---NLKVVSEIWRER-------SPIRKEQQSSLAS 627
LYS +G +SKP++ ++ L + S N S+ W + I E+ ++
Sbjct: 1273 LYSKEGLNLSKPLNPYDLLGSQISSSSENAFETSKAWNNNTLDKCDVTSIGLEKSENVFK 1332
Query: 626 SIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKDEKIGTGIQ 447
S+++ ++ IQK +L+RIL +Y +NE L+E DKS L AL+FHP K +K+G+G+Q
Sbjct: 1333 SVIRKYLTINDIQKWTQTLKRIL-RKYDINESLTEGDKSILKMALHFHPHKVDKMGSGVQ 1391
Query: 446 DIKVG--KHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
DIKV + +H+ +RCF ++R D + EDFSY+KC+ G
Sbjct: 1392 DIKVHYIEKRKHENARCFMLVRIDRTEEDFSYHKCVLG 1429
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 423 bits (1087), Expect = e-115
Identities = 238/526 (45%), Positives = 324/526 (61%), Gaps = 23/526 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K++ +QT +LFLS +L R +G EY A++VKNHLER+ FSDIV+TV II F P
Sbjct: 950 KRSNADQTMTLFLSNKLGRKRHGSEYAALEVKNHLERLTFSDIVTTVSII-----FSPQM 1004
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
++ H PW HFH+CK+ +KRR L VQ II +L C + KI L +
Sbjct: 1005 YREN--------HFTPWVCHFHVCKDTMKRRQLKVQSIIDSLHMHCTTAKTMWKISLPDM 1056
Query: 1487 KILNGSCADAQKE---KDGALCITLA-AEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEF 1320
+I + A + + +D CIT+ E S M +D+ RD VIP LL VI+GF E
Sbjct: 1057 QITSNGRACSHIDMPNEDDTFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEI 1116
Query: 1319 KKVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSY 1140
KKVDILW D+ SK S GELY++V S K W +LM+ CL IMD+IDW RS+
Sbjct: 1117 KKVDILWKDRLKVSKPHKSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSH 1176
Query: 1139 PDNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKG 960
PDNI + ++GI+ FL +LK A SD GK IL +HLL+VA+CLSATGEFVGLN+KG
Sbjct: 1177 PDNINQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKG 1236
Query: 959 IEKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFN 780
+ +QR+ A VSSPF QACFSNP + F+KAAK D L G +DA AWG+ +GTGGQF+
Sbjct: 1237 LRQQREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFD 1296
Query: 779 ILYSGKGHEVSKPVDIFNKLSGPLCSNLKVVSEIWRERSPIRKEQQSSL----------- 633
I+YS K +++PVD++ L + S + V + + E+ SL
Sbjct: 1297 IIYSVKDQRLAEPVDVYKLLGSSISSQKQDVEFEVPKALNFKSEKYGSLLIDALGDSASE 1356
Query: 632 --------ASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPR 477
SI + + +L+ IQ++ +LR ILH +Y ++ LSE+D + L+ AL FHPR
Sbjct: 1357 ELKKIETKRRSIWRELLTLDDIQRLSRALRNILH-KYPIDHRLSEADWNTLMMALYFHPR 1415
Query: 476 KDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
+DEKIG+G Q+IKVG HPEH +RCF ++R DG++ DFSY+KC+ G
Sbjct: 1416 RDEKIGSGAQEIKVGYHPEHANARCFSLVRTDGTIVDFSYHKCVLG 1461
>ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Nicotiana sylvestris]
Length = 1254
Score = 422 bits (1085), Expect = e-115
Identities = 234/519 (45%), Positives = 317/519 (61%), Gaps = 18/519 (3%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K + +TASLFLSKRL RW +G EYGA++VK HLER+ SDIVSTVMI +K TH
Sbjct: 715 KSNSSEKTASLFLSKRLGRWAHGFEYGALEVKGHLERLLLSDIVSTVMICFSPGTYKSTH 774
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S PW HFH+ KE +K R L ++ +I L +S IDL +L
Sbjct: 775 SS-------------PWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSL 821
Query: 1487 KILNGSCADAQKEK-DGALCITLAA-EVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKK 1314
I C+ A+ +K + +CI +A E S L+D RD VIP LL TVI+GF FKK
Sbjct: 822 HITCKDCSVAEMQKANSKICIAVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKK 881
Query: 1313 VDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPD 1134
VDILW + SKS S GELY++V SE+C WN L+ CLHIMDLIDWE S+PD
Sbjct: 882 VDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEWSHPD 941
Query: 1133 NIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIE 954
N+ D+ ++G++ A FL +L A S+ GK ILP+HL+L ADCL+ATGEFV LN KG+
Sbjct: 942 NVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILPEHLVLAADCLTATGEFVPLNTKGLA 1001
Query: 953 KQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNIL 774
+QR A V SPF QACFS+P F++AAK D L G L+A AWGK GTG F+I+
Sbjct: 1002 QQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDII 1061
Query: 773 YSGKGHEVSKPVDIFNKLSGPLCSNLKVVSEIWRERSPI----------------RKEQQ 642
YSGKG+E + P D++ L + SN + V E + K +
Sbjct: 1062 YSGKGYEPAAPTDVYALLGNHVTSNKQQVKVTLDEDNETADKALARRLCKLDDLNTKRCK 1121
Query: 641 SSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKDEKI 462
S + + ++ S I+K+ +L+++L ++Y+++ LSE+DKS ++ AL+FHPR+ EKI
Sbjct: 1122 SQWSIANLRSFLSFNDIKKLSQALKQML-SKYAIDRELSEADKSIVMMALHFHPRRSEKI 1180
Query: 461 GTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCI 345
G G +IK+G H E++ SRCF ++R DG+VEDFSY KC+
Sbjct: 1181 GKGAMEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCL 1219
>ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nicotiana sylvestris] gi|698503797|ref|XP_009797464.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Nicotiana sylvestris]
gi|698503800|ref|XP_009797465.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Nicotiana
sylvestris] gi|698503802|ref|XP_009797466.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nicotiana sylvestris] gi|698503804|ref|XP_009797467.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Nicotiana sylvestris]
Length = 1447
Score = 422 bits (1085), Expect = e-115
Identities = 234/519 (45%), Positives = 317/519 (61%), Gaps = 18/519 (3%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K + +TASLFLSKRL RW +G EYGA++VK HLER+ SDIVSTVMI +K TH
Sbjct: 908 KSNSSEKTASLFLSKRLGRWAHGFEYGALEVKGHLERLLLSDIVSTVMICFSPGTYKSTH 967
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S PW HFH+ KE +K R L ++ +I L +S IDL +L
Sbjct: 968 SS-------------PWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSL 1014
Query: 1487 KILNGSCADAQKEK-DGALCITLAA-EVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKK 1314
I C+ A+ +K + +CI +A E S L+D RD VIP LL TVI+GF FKK
Sbjct: 1015 HITCKDCSVAEMQKANSKICIAVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKK 1074
Query: 1313 VDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPD 1134
VDILW + SKS S GELY++V SE+C WN L+ CLHIMDLIDWE S+PD
Sbjct: 1075 VDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEWSHPD 1134
Query: 1133 NIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIE 954
N+ D+ ++G++ A FL +L A S+ GK ILP+HL+L ADCL+ATGEFV LN KG+
Sbjct: 1135 NVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILPEHLVLAADCLTATGEFVPLNTKGLA 1194
Query: 953 KQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNIL 774
+QR A V SPF QACFS+P F++AAK D L G L+A AWGK GTG F+I+
Sbjct: 1195 QQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDII 1254
Query: 773 YSGKGHEVSKPVDIFNKLSGPLCSNLKVVSEIWRERSPI----------------RKEQQ 642
YSGKG+E + P D++ L + SN + V E + K +
Sbjct: 1255 YSGKGYEPAAPTDVYALLGNHVTSNKQQVKVTLDEDNETADKALARRLCKLDDLNTKRCK 1314
Query: 641 SSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKDEKI 462
S + + ++ S I+K+ +L+++L ++Y+++ LSE+DKS ++ AL+FHPR+ EKI
Sbjct: 1315 SQWSIANLRSFLSFNDIKKLSQALKQML-SKYAIDRELSEADKSIVMMALHFHPRRSEKI 1373
Query: 461 GTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCI 345
G G +IK+G H E++ SRCF ++R DG+VEDFSY KC+
Sbjct: 1374 GKGAMEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCL 1412
>ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Pyrus x
bretschneideri] gi|694406181|ref|XP_009377913.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
[Pyrus x bretschneideri]
Length = 1466
Score = 421 bits (1083), Expect = e-115
Identities = 238/524 (45%), Positives = 327/524 (62%), Gaps = 21/524 (4%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
KK++ QT SL+LS++L R +G EY A++VKN+LE + FSDIVSTV+II F +
Sbjct: 934 KKSSAKQTMSLYLSEKLVRHRHGFEYAALEVKNYLEGLKFSDIVSTVLII-----FSSQN 988
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
SK PW HFH+ KE ++RR L + I+ +L C S LK L +L
Sbjct: 989 GSKKRFS--------PWVTHFHIGKEIVRRRRLKMHSIVNSLYARCNSARPELKAILRSL 1040
Query: 1487 KILNGSCADAQ--KEKDGALCITLA-AEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFK 1317
I + C++A K + CIT+A AE S +D RD VIP LL TV++G LE K
Sbjct: 1041 LITSKDCSEAHTCKGDNDTFCITVAMAENHKSSSEQLDKARDLVIPFLLETVVKGLLEVK 1100
Query: 1316 KVDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYP 1137
KVDILWNDQ SK + S GELY+KV+ + W++L+ C+ IM++IDW RS+P
Sbjct: 1101 KVDILWNDQPKRSKVADGSSGELYLKVSMVGKSGKKRLWSMLLDSCIQIMNVIDWSRSHP 1160
Query: 1136 DNIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGI 957
DN+ + ++GI+ + FL SL+ +DIGK ILP+HL+LVADCL+ TGEFVGLNAKGI
Sbjct: 1161 DNVHEYCLAYGIDVGWNYFLNSLESTCNDIGKNILPEHLILVADCLTCTGEFVGLNAKGI 1220
Query: 956 EKQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNI 777
+Q++ A VSSPF QACFS P +CF+KAAK D L G L+A AWGK P GTG QF +
Sbjct: 1221 AQQQEHASVSSPFMQACFSTPGACFVKAAKAGAVDELPGSLEALAWGKPPPSGTGRQFEV 1280
Query: 776 LYSGKGHEVSKPVDIFNKLS---GPLC--SNLKVVSEIWRER-----SP--------IRK 651
L+S KG +SKP+D+++ L G +C N + E+ SP +
Sbjct: 1281 LFSQKGLNLSKPLDVYDMLRRQVGSICIKENEVKMPEVLNNSLDKCGSPYLLQNAKYVGL 1340
Query: 650 EQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKD 471
E+ S++ S++K I K + R IL +Y +NE L++ DKSKL+ AL FHP +
Sbjct: 1341 EKFESISKSVIKKYLKFNDILKWSQTWRHIL-RKYPINETLNDEDKSKLMTALYFHPHRM 1399
Query: 470 EKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 339
+KIG G+QDIK+G HP+H+ ++CF V+R DG+VEDFSY+KC+ G
Sbjct: 1400 DKIGPGVQDIKIGAHPKHEGAQCFMVVRTDGTVEDFSYHKCVMG 1443
>ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852096|ref|XP_011029162.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852100|ref|XP_011029163.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852104|ref|XP_011029164.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852108|ref|XP_011029165.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852112|ref|XP_011029166.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852116|ref|XP_011029168.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852120|ref|XP_011029169.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852124|ref|XP_011029170.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica]
Length = 1488
Score = 419 bits (1078), Expect = e-114
Identities = 238/553 (43%), Positives = 338/553 (61%), Gaps = 28/553 (5%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K+ + +QT SLFLS++L R +G EY A++V+NHLER+ FSDIVS V II F P
Sbjct: 947 KRNSAHQTMSLFLSEKLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRII-----FSPQS 1001
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
+ H PW HFH+ KE +K+R L + +II L ++C+S K+ + +
Sbjct: 1002 DGR--------MHFSPWVCHFHVYKEIVKKRSLKMHYIIDALDKQCKSKTRFPKVQITSR 1053
Query: 1487 KILNGSCADAQKEKDGALCITLA-AEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKKV 1311
+ AD KEK CIT+ E + ++ +D +IP LL TVI+GF+E +KV
Sbjct: 1054 YC---TVADTWKEKKETFCITVTIVETSKNEFIELETIQDLMIPFLLETVIKGFMEIRKV 1110
Query: 1310 DILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPDN 1131
DILWND+ KS N GEL+++V+ S + WN LM CL IMD+IDW RS+PDN
Sbjct: 1111 DILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLSIMDIIDWARSHPDN 1170
Query: 1130 IPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIEK 951
I + ++GI+ FL +L+ A SD+GK +LP+HLLLVA+CLS TGEFVGLNAKG+++
Sbjct: 1171 IHECCLAYGIDAGWKFFLNNLQSAMSDVGKTLLPEHLLLVANCLSVTGEFVGLNAKGLKR 1230
Query: 950 QRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNILY 771
QR+ A VS+PF QACFSNP CFI+AAK D L G +DA AWGK +GT GQF+I+Y
Sbjct: 1231 QREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKIPAIGT-GQFDIVY 1289
Query: 770 SGKGHEVSKPVDIFNKLSGPLCSNLK------VVSEIWRERSPIRK-------------E 648
SGKG E SKPVD++N L + + + + ++I++ + +
Sbjct: 1290 SGKGLEFSKPVDVYNLLGSQMITPGQNTEFGVLDAQIYKSDKCGAQFLHKFGGCGRKGFK 1349
Query: 647 QQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKDE 468
+ + S ++ + + + IQ++ ++R+IL +YSV++ L+E DKS L+ L FHPR+DE
Sbjct: 1350 VKEGIPRSFLRRLLTYDDIQRMSYTVRKIL-KKYSVDQQLNERDKSVLMMTLYFHPRRDE 1408
Query: 467 KIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG----FARSLGQTFCSIP 300
KIG G +DIKV HPE+Q +RCF ++R DG++EDFSY KC+ A Q +C
Sbjct: 1409 KIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEIIAPQRAQRYCEKY 1468
Query: 299 RVSRV----NSQC 273
S+V NS C
Sbjct: 1469 LTSKVPATDNSGC 1481
>ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Nicotiana tomentosiformis]
Length = 1211
Score = 419 bits (1077), Expect = e-114
Identities = 233/519 (44%), Positives = 317/519 (61%), Gaps = 18/519 (3%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K + +TA+LFLS+RL RW +G EYGAI+VK HLER+ SDIVSTVMI K TH
Sbjct: 672 KSNSSEKTATLFLSRRLGRWAHGFEYGAIEVKGHLERLLLSDIVSTVMICFSPETCKSTH 731
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S PW HFH+ KE +K R L ++ +I L +S IDL +L
Sbjct: 732 SS-------------PWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSL 778
Query: 1487 KILNGSCADAQKEK-DGALCITLAA-EVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKK 1314
I C+ A+ +K + +CIT+A E S L+D RD VIP LL TVI+GF FKK
Sbjct: 779 HITCKDCSAAEMQKANSKICITVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKK 838
Query: 1313 VDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPD 1134
VDILW + SKS S GELY++V SE+C WN L+ CLHIMDLIDWE+S+PD
Sbjct: 839 VDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEQSHPD 898
Query: 1133 NIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIE 954
N+ D+ ++G++ A FL +L A S+ GK IL +HL+L ADCL+ATGEFV LN KG+
Sbjct: 899 NVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILLEHLVLAADCLTATGEFVPLNTKGLA 958
Query: 953 KQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNIL 774
+QR A V SPF QACFS+P F++AAK D L G L+A AWGK GTG F+I+
Sbjct: 959 QQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDII 1018
Query: 773 YSGKGHEVSKPVDIFNKLSGPLCSNLKVVSEIWRERSPI----------------RKEQQ 642
YSGKG+E + P D++ L + SN + V E + K +
Sbjct: 1019 YSGKGYEPAAPTDVYALLGNHVTSNRQQVKVTLDEDNETADKALARRLCKLDDLNTKRCK 1078
Query: 641 SSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKDEKI 462
S + + ++ S I+K+ +L+++L ++Y+++ LSE+DKS ++ AL+FHPR+ EKI
Sbjct: 1079 SQWSIANLRSFLSFNDIKKLSQALKQML-SKYAIDRELSEADKSIVMMALHFHPRRSEKI 1137
Query: 461 GTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCI 345
G G +IK+G H E++ SRCF ++R DG+VEDFSY KC+
Sbjct: 1138 GKGAMEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCL 1176
>ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nicotiana tomentosiformis]
Length = 1447
Score = 419 bits (1077), Expect = e-114
Identities = 233/519 (44%), Positives = 317/519 (61%), Gaps = 18/519 (3%)
Frame = -3
Query: 1847 KKTAVNQTASLFLSKRLARWLYGMEYGAIKVKNHLERVFFSDIVSTVMIIALKIPFKPTH 1668
K + +TA+LFLS+RL RW +G EYGAI+VK HLER+ SDIVSTVMI K TH
Sbjct: 908 KSNSSEKTATLFLSRRLGRWAHGFEYGAIEVKGHLERLLLSDIVSTVMICFSPETCKSTH 967
Query: 1667 KSKDNIPDVSFSHQCPWQIHFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATL 1488
S PW HFH+ KE +K R L ++ +I L +S IDL +L
Sbjct: 968 SS-------------PWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSL 1014
Query: 1487 KILNGSCADAQKEK-DGALCITLAA-EVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKK 1314
I C+ A+ +K + +CIT+A E S L+D RD VIP LL TVI+GF FKK
Sbjct: 1015 HITCKDCSAAEMQKANSKICITVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKK 1074
Query: 1313 VDILWNDQSVASKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPD 1134
VDILW + SKS S GELY++V SE+C WN L+ CLHIMDLIDWE+S+PD
Sbjct: 1075 VDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEQSHPD 1134
Query: 1133 NIPDVYYSFGINCARDIFLTSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIE 954
N+ D+ ++G++ A FL +L A S+ GK IL +HL+L ADCL+ATGEFV LN KG+
Sbjct: 1135 NVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILLEHLVLAADCLTATGEFVPLNTKGLA 1194
Query: 953 KQRDLAEVSSPFTQACFSNPESCFIKAAKERTEDGLLGVLDAAAWGKEIPLGTGGQFNIL 774
+QR A V SPF QACFS+P F++AAK D L G L+A AWGK GTG F+I+
Sbjct: 1195 QQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDII 1254
Query: 773 YSGKGHEVSKPVDIFNKLSGPLCSNLKVVSEIWRERSPI----------------RKEQQ 642
YSGKG+E + P D++ L + SN + V E + K +
Sbjct: 1255 YSGKGYEPAAPTDVYALLGNHVTSNRQQVKVTLDEDNETADKALARRLCKLDDLNTKRCK 1314
Query: 641 SSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFHPRKDEKI 462
S + + ++ S I+K+ +L+++L ++Y+++ LSE+DKS ++ AL+FHPR+ EKI
Sbjct: 1315 SQWSIANLRSFLSFNDIKKLSQALKQML-SKYAIDRELSEADKSIVMMALHFHPRRSEKI 1373
Query: 461 GTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCI 345
G G +IK+G H E++ SRCF ++R DG+VEDFSY KC+
Sbjct: 1374 GKGAMEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCL 1412