BLASTX nr result
ID: Aconitum23_contig00016367
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum23_contig00016367
(1603 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGN74011.1| RNA polymerase alpha subunit (chloroplast) [Aconi... 660 0.0
ref|YP_009114901.1| RNA polymerase alpha subunit [Thalictrum cor... 620 e-175
ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus mac... 614 e-173
gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus] 610 e-172
ref|YP_009169384.1| RNA polymerase alpha subunit (chloroplast) [... 608 e-171
gb|AIZ57560.1| RNA polymerase alpha subunit (chloroplast) [Clema... 608 e-171
gb|AKM98453.1| RNA polymerase alpha subunit (chloroplast) [Pulsa... 600 e-169
ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]... 599 e-168
ref|YP_009093981.1| RNA polymerase alpha subunit (chloroplast) [... 598 e-168
gb|AKM98101.1| RNA polymerase alpha subunit (chloroplast) [Anemo... 596 e-167
ref|YP_002836122.1| RNA polymerase alpha subunit [Megaleranthis ... 594 e-167
gb|ADD31217.1| RNA polymerase alpha subunit protein (chloroplast... 590 e-166
gb|ADD31223.1| RNA polymerase alpha subunit protein (chloroplast... 587 e-164
gb|ADD31229.1| RNA polymerase alpha subunit protein (chloroplast... 585 e-164
ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [... 582 e-163
ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica... 581 e-163
ref|YP_740597.1| RNA polymerase alpha subunit [Platanus occident... 581 e-163
ref|YP_001294216.1| RNA polymerase alpha subunit [Buxus microphy... 581 e-163
ref|YP_009048319.1| DNA-directed RNA polymerase alpha chain (chl... 580 e-163
ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [... 580 e-162
>gb|AGN74011.1| RNA polymerase alpha subunit (chloroplast) [Aconitum barbatum var.
puberulum]
Length = 337
Score = 660 bits (1702), Expect = 0.0
Identities = 329/337 (97%), Positives = 331/337 (98%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEI+LRSNLYGTRDAYICVKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEILLRSNLYGTRDAYICVKGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EPIDL IGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLVEPIDLCIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQD NLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDTNLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQL+LPSRTYNCLKRS IHTLLDLLN
Sbjct: 241 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLELPSRTYNCLKRSNIHTLLDLLN 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF
Sbjct: 301 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 337
>ref|YP_009114901.1| RNA polymerase alpha subunit [Thalictrum coreanum]
gi|721136338|gb|AIX03549.1| RNA polymerase alpha subunit
(plastid) [Thalictrum coreanum]
Length = 337
Score = 620 bits (1600), Expect = e-175
Identities = 310/337 (91%), Positives = 321/337 (95%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
MLRE+VA STRTLQWKCVESRADSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLREEVAVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICVKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEI+DTTQHIASL EP+DL I LQIER+RGYRMKTP NAQEGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIIDTTQHIASLTEPVDLCIRLQIERSRGYRMKTPNNAQEGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQD NLE
Sbjct: 181 NANHSIHSYGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDRNLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ RVTLPFFTFHD LDKLRKNKKEIELKCIFIDQ +LPSRTYNCLKRS I+TLLDLLN
Sbjct: 241 DNQGRVTLPFFTFHDRLDKLRKNKKEIELKCIFIDQSELPSRTYNCLKRSNINTLLDLLN 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
KSQED+MK+E+F IEDVR+ILGILQKHFVIDLPK KF
Sbjct: 301 KSQEDIMKMEHFRIEDVRRILGILQKHFVIDLPKKKF 337
>ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus macranthus]
gi|158514028|sp|A1XGS0.1|RPOA_RANMC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Ranunculus macranthus]
gi|85540836|gb|ABC70788.1| RNA polymerase alpha subunit
(chloroplast) [Ranunculus macranthus]
Length = 346
Score = 614 bits (1583), Expect = e-173
Identities = 310/344 (90%), Positives = 322/344 (93%), Gaps = 2/344 (0%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
MLR++VA S RTLQWKCVESRADSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLRDEVAVSARTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICVKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EP+D IGLQIE NRGYRMKTP NAQ+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNE QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQD NL+
Sbjct: 181 NANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLK 240
Query: 392 DNQKR-VTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLL 216
DNQK VTLPFFTFHDG DKL+KNKKEIELKCIFIDQ +LPSRTYNCLKR+ IHTLLDLL
Sbjct: 241 DNQKNGVTLPFFTFHDGFDKLKKNKKEIELKCIFIDQSELPSRTYNCLKRANIHTLLDLL 300
Query: 215 NKSQEDLMKIEYFCIEDVRQILGILQKHF-VIDLPKNKF*I*NP 87
NKSQEDLMKIE+F IEDV+QIL I+QKHF VIDLPKNKF I NP
Sbjct: 301 NKSQEDLMKIEHFRIEDVKQILDIIQKHFVVIDLPKNKFLIGNP 344
>gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]
Length = 339
Score = 610 bits (1574), Expect = e-172
Identities = 307/339 (90%), Positives = 319/339 (94%), Gaps = 2/339 (0%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
MLR++VA S RTLQWKCVESRADSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLRDEVAVSARTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICVKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EP+D IGLQIE NRGYRMKTP NAQ+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNE QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQD NL+
Sbjct: 181 NANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLK 240
Query: 392 DNQKR-VTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLL 216
DNQK VTLPFFTFHDG DKL+KNKKEIELKCIFIDQ +LPSRTYNCLKR+ IHTLLDLL
Sbjct: 241 DNQKNGVTLPFFTFHDGFDKLKKNKKEIELKCIFIDQSELPSRTYNCLKRANIHTLLDLL 300
Query: 215 NKSQEDLMKIEYFCIEDVRQILGILQKHF-VIDLPKNKF 102
NKSQEDLMKIE+F IEDV+QIL I+QKHF VIDLPKNKF
Sbjct: 301 NKSQEDLMKIEHFRIEDVKQILDIIQKHFVVIDLPKNKF 339
>ref|YP_009169384.1| RNA polymerase alpha subunit (chloroplast) [Clematis terniflora]
gi|687814883|gb|AIQ81125.1| RNA polymerase alpha subunit
(chloroplast) [Clematis terniflora]
Length = 339
Score = 608 bits (1569), Expect = e-171
Identities = 305/337 (90%), Positives = 316/337 (93%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M RE+VA STRTLQWKCVESR DSKR YYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MFREEVAVSTRTLQWKCVESREDSKRFYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTI GIEESVHEILMNLKEIVL+SNLYGTRDA ICVKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIEGIEESVHEILMNLKEIVLKSNLYGTRDASICVKGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EPID IGLQIE NRGYRMKTP NA+EGSYPI+AVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDFCIGLQIESNRGYRMKTPNNAEEGSYPINAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQD N+E
Sbjct: 181 NANHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDKNVE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ RV+LPFFTFHDGLDKLRK KKEIELKC FIDQL+LPSRTYNCLKRS IHTLLDLLN
Sbjct: 241 DNQNRVSLPFFTFHDGLDKLRK-KKEIELKCFFIDQLELPSRTYNCLKRSNIHTLLDLLN 299
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
KSQEDLMKIE+F IEDV+QIL I+QKHFVIDLPKNKF
Sbjct: 300 KSQEDLMKIEHFRIEDVKQILVIIQKHFVIDLPKNKF 336
>gb|AIZ57560.1| RNA polymerase alpha subunit (chloroplast) [Clematis fusca var.
coreana]
Length = 339
Score = 608 bits (1568), Expect = e-171
Identities = 305/337 (90%), Positives = 315/337 (93%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M RE+VA STRTLQWKCVESR DSKR YYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MFREEVAVSTRTLQWKCVESREDSKRFYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTI GIEESVHEILMNLKEIVL+SNLYGTRDA ICVKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIEGIEESVHEILMNLKEIVLKSNLYGTRDASICVKGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EPID IGLQIE NRGYRMKTP NA+EGSYPI+AVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDFCIGLQIESNRGYRMKTPNNAEEGSYPINAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQD N+E
Sbjct: 181 NANHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDKNVE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ RVTLPFFTFHDGLDKLRK KKEIELKC FIDQL+LPSRTYNCLKRS IHTLLDLLN
Sbjct: 241 DNQNRVTLPFFTFHDGLDKLRK-KKEIELKCFFIDQLELPSRTYNCLKRSNIHTLLDLLN 299
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
KSQEDLMKIE+F IEDV+QIL I+QKHFVIDLP NKF
Sbjct: 300 KSQEDLMKIEHFRIEDVKQILVIIQKHFVIDLPNNKF 336
>gb|AKM98453.1| RNA polymerase alpha subunit (chloroplast) [Pulsatilla vernalis]
gi|844170749|gb|AKM98541.1| RNA polymerase alpha subunit
(chloroplast) [Pulsatilla vernalis]
Length = 339
Score = 600 bits (1548), Expect = e-169
Identities = 300/334 (89%), Positives = 313/334 (93%)
Frame = -3
Query: 1121 NIIMLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEI 942
N+ M RE+VA STRTLQWKCVESR DSKR +YGRF+LSPLMKGQADTIGIAMRRALLGEI
Sbjct: 6 NMTMFREEVAVSTRTLQWKCVESREDSKRFFYGRFILSPLMKGQADTIGIAMRRALLGEI 65
Query: 941 EGTCITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVT 762
EGTCITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVL+SNLYGTRDA ICVKGPGYVT
Sbjct: 66 EGTCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVKGPGYVT 125
Query: 761 AQDIILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFM 582
AQDII PPSVEIVDTTQHIASL EPID IGLQIE NRGYRMKTP NA+EGSYPI+AVFM
Sbjct: 126 AQDIISPPSVEIVDTTQHIASLTEPIDFCIGLQIESNRGYRMKTPNNAEEGSYPINAVFM 185
Query: 581 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDA 402
PVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQD
Sbjct: 186 PVRNANHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDK 245
Query: 401 NLEDNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLD 222
N+EDNQ RVTLPFFTFHD LDKLRK KKEIELKCIFIDQL+LPSRTYNCLKRS IHTLLD
Sbjct: 246 NVEDNQNRVTLPFFTFHDVLDKLRK-KKEIELKCIFIDQLELPSRTYNCLKRSNIHTLLD 304
Query: 221 LLNKSQEDLMKIEYFCIEDVRQILGILQKHFVID 120
LLNKSQEDL+KIE+FCIEDV+QI I+QKHFVID
Sbjct: 305 LLNKSQEDLLKIEHFCIEDVKQIFVIIQKHFVID 338
>ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]
gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo lutea] gi|383286921|gb|AFH01570.1|
RNA polymerase alpha subunit (chloroplast) [Nelumbo
lutea]
Length = 339
Score = 599 bits (1545), Expect = e-168
Identities = 299/339 (88%), Positives = 316/339 (93%), Gaps = 2/339 (0%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+RE++A STRTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEIAVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA+ICV+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EPIDL IGLQIERNRGYRMKTP N+Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFL A+E+D LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLDAQEEDIQLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNK--KEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDL 219
DNQ +VTLPFFTFHD L KLRKNK KEI LKCIFIDQ +LP RTYNCLKRS IHTLLDL
Sbjct: 241 DNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 300
Query: 218 LNKSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
LN SQEDLMK+E+F IEDV+QIL ILQKHF IDLPKNKF
Sbjct: 301 LNNSQEDLMKMEHFQIEDVKQILDILQKHFAIDLPKNKF 339
>ref|YP_009093981.1| RNA polymerase alpha subunit (chloroplast) [Nelumbo nucifera]
gi|224474255|gb|ACN49441.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|290489668|gb|ADD31218.1| RNA polymerase alpha subunit
protein (chloroplast) [Nelumbo nucifera]
gi|383286829|gb|AFH01479.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|519666943|gb|AGO98555.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|725824076|gb|AIY33855.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
Length = 339
Score = 598 bits (1542), Expect = e-168
Identities = 299/339 (88%), Positives = 315/339 (92%), Gaps = 2/339 (0%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+RE++A STRTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEIAVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA+ICV+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EPIDL IGLQIERNRGYRMKTP N+Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFL A+E+D LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLDAQEEDIQLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNK--KEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDL 219
DNQ +VTLPFFTFHD L KLRKNK KEI LKCIFIDQ +LP RTYNCLKRS IHTLLDL
Sbjct: 241 DNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 300
Query: 218 LNKSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
LN SQEDLMK+ +F IEDV+QIL ILQKHF IDLPKNKF
Sbjct: 301 LNNSQEDLMKMFHFQIEDVKQILDILQKHFAIDLPKNKF 339
>gb|AKM98101.1| RNA polymerase alpha subunit (chloroplast) [Anemone patens]
gi|844170228|gb|AKM98189.1| RNA polymerase alpha subunit
(chloroplast) [Anemone patens]
gi|844170354|gb|AKM98277.1| RNA polymerase alpha subunit
(chloroplast) [Pulsatilla pratensis]
gi|844170476|gb|AKM98365.1| RNA polymerase alpha subunit
(chloroplast) [Pulsatilla pratensis]
Length = 339
Score = 596 bits (1536), Expect = e-167
Identities = 299/334 (89%), Positives = 312/334 (93%)
Frame = -3
Query: 1121 NIIMLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEI 942
N+ M RE+VA STRTLQWKCVESR DSKR +YGRF+LSPLMKGQADTIGIAMRRALLGEI
Sbjct: 6 NMTMFREEVAVSTRTLQWKCVESREDSKRFFYGRFILSPLMKGQADTIGIAMRRALLGEI 65
Query: 941 EGTCITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVT 762
EGTCITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVL+SNLYGTRDA ICVKGPGYVT
Sbjct: 66 EGTCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVKGPGYVT 125
Query: 761 AQDIILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFM 582
AQDII PPSVEIVDTTQHIASL EPID IGLQIE NRGYRMKTP NA+EGSYPI+AVFM
Sbjct: 126 AQDIISPPSVEIVDTTQHIASLTEPIDFCIGLQIESNRGYRMKTPNNAEEGSYPINAVFM 185
Query: 581 PVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDA 402
PVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQD
Sbjct: 186 PVRNANHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDK 245
Query: 401 NLEDNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLD 222
N+EDNQ RVTLPFFTFHD LDKLRK KKEIELKCIFIDQL+LPSRTYNCLKRS IHTLLD
Sbjct: 246 NVEDNQNRVTLPFFTFHDVLDKLRK-KKEIELKCIFIDQLELPSRTYNCLKRSNIHTLLD 304
Query: 221 LLNKSQEDLMKIEYFCIEDVRQILGILQKHFVID 120
LLNKSQEDL+KIE+F IEDV+QI I+QKHFVID
Sbjct: 305 LLNKSQEDLLKIEHFRIEDVKQIFVIIQKHFVID 338
>ref|YP_002836122.1| RNA polymerase alpha subunit [Megaleranthis saniculifolia]
gi|226933914|gb|ACO92047.1| RNA polymerase alpha subunit
(chloroplast) [Megaleranthis saniculifolia]
Length = 328
Score = 594 bits (1532), Expect = e-167
Identities = 298/325 (91%), Positives = 308/325 (94%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
MLRE+VA STRTLQWKCVESRADSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLREEVAVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICVKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVD TQHIASL EPIDL I LQIERNRGYRMKTP NAQE SYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWT+GSLTPKEALYEASRNLIDLFIPFLHAEEQD LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ RVTLPFFTFHDGLDK+RKNKKEIELKCIFIDQ +LPSRTYNCLKR IHTLLDLLN
Sbjct: 241 DNQSRVTLPFFTFHDGLDKVRKNKKEIELKCIFIDQSELPSRTYNCLKRFNIHTLLDLLN 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQ 138
KSQEDLMK+E+F IEDVR+ILGI++
Sbjct: 301 KSQEDLMKMEHFRIEDVRRILGIIK 325
>gb|ADD31217.1| RNA polymerase alpha subunit protein (chloroplast) [Meliosma aff.
cuneifolia Moore 333]
Length = 337
Score = 590 bits (1522), Expect = e-166
Identities = 295/336 (87%), Positives = 312/336 (92%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+RE+VA STRTLQWKCVESRADSKRLYYGRF++SPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRADSKRLYYGRFIMSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK E IPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICV+GPGYVTAQD
Sbjct: 61 CITRAKSETIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II P SVEIVDTTQHIASL EPI+L IGLQIERN GYRMKTPKN+Q+GSYPIDAVFMPVR
Sbjct: 121 IISPSSVEIVDTTQHIASLTEPINLCIGLQIERNHGYRMKTPKNSQDGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+D +E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEEDIIIE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ R T+PFFTFHD L KLRKNKKEI LK IFIDQ +LP RTYNCLKRS IHTLLDLLN
Sbjct: 241 DNQNRFTVPFFTFHDRLAKLRKNKKEIALKFIFIDQSELPPRTYNCLKRSNIHTLLDLLN 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNK 105
KSQEDLM+IE+F IEDV+ ILGILQKHF I+LPKNK
Sbjct: 301 KSQEDLMRIEHFRIEDVKHILGILQKHFEINLPKNK 336
>gb|ADD31223.1| RNA polymerase alpha subunit protein (chloroplast) [Berberidopsis
corallina]
Length = 337
Score = 587 bits (1512), Expect = e-164
Identities = 294/337 (87%), Positives = 309/337 (91%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+REKV STRTLQWKCVESRADSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGI+ESVHEILMNLKEIVLRSNLYGT DA ICV+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVD TQHIASL EPIDL IGLQIERNRGYR+KT N Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTLNNFQDGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE++ +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ + T P FTFHD L KLRKNKKEI LK IFIDQL+LP R YNCLKRS IHTL DLLN
Sbjct: 241 DNQHKATFPLFTFHDRLAKLRKNKKEIALKYIFIDQLELPPRIYNCLKRSNIHTLSDLLN 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
SQEDLMKIE+F IEDV+QILGIL+KHF IDLPKNKF
Sbjct: 301 NSQEDLMKIEHFRIEDVKQILGILEKHFTIDLPKNKF 337
>gb|ADD31229.1| RNA polymerase alpha subunit protein (chloroplast) [Heuchera
sanguinea] gi|924443834|gb|ALB78364.1| RNA polymerase
alpha subunit (chloroplast) [Heuchera parviflora var.
saurensis]
Length = 337
Score = 585 bits (1509), Expect = e-164
Identities = 291/337 (86%), Positives = 310/337 (91%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+REKV STRTL+WKCVESRADSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLEWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGI+ESVHEILMNLKE+VLRSNLYGTR+A ICV GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRNASICVSGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVD TQHIASL EPIDL IGLQIE+NRGYR+KTP N Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE++ +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ +VTLP FTFHD L KLRKNKKEI LK IFIDQ +LP R Y CLKRS IHTLLDLLN
Sbjct: 241 DNQHKVTLPLFTFHDRLAKLRKNKKEIALKYIFIDQSELPPRIYTCLKRSNIHTLLDLLN 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
SQEDLMKIE+F IEDV++ILG L+KHF IDLPKNKF
Sbjct: 301 NSQEDLMKIEHFRIEDVKEILGFLEKHFEIDLPKNKF 337
>ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [Magnolia officinalis]
gi|452848803|ref|YP_007474484.1| RNA polymerase alpha
subunit (chloroplast) [Magnolia officinalis subsp.
biloba] gi|619275767|ref|YP_009026913.1| RNA polymerase
alpha subunit (plastid) [Magnolia tripetala]
gi|372862453|gb|AEX98534.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis]
gi|372862536|gb|AEX98616.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862621|gb|AEX98700.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862706|gb|AEX98784.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|608608435|gb|AHW51989.1| RNA polymerase alpha subunit
(plastid) [Magnolia tripetala]
Length = 337
Score = 582 bits (1501), Expect = e-163
Identities = 291/337 (86%), Positives = 308/337 (91%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+RE+VA STRTLQWKCVESR DSKRLYYGRF+L+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDA ICV+GP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EPIDL I LQIER+RGYRMKTP N Q+GSYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEQD NLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDINLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DN R T+PFFTFHD L +RKNKK I LKCIFIDQ +LP RTYNCLKRS IHTLLDLL+
Sbjct: 241 DNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLDLLS 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
SQEDLM+IE+F IEDV+QIL ILQKHF IDLPKNKF
Sbjct: 301 NSQEDLMRIEHFRIEDVKQILDILQKHFTIDLPKNKF 337
>ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica]
gi|122165930|sp|Q09FS9.1|RPOA_NANDO RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Nandina domestica]
gi|114054503|gb|ABI49896.1| RNA polymerase alpha subunit
(chloroplast) [Nandina domestica]
Length = 338
Score = 581 bits (1498), Expect = e-163
Identities = 295/337 (87%), Positives = 310/337 (91%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
MLRE+VA STRTLQW+CVESR DSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLREEVAVSTRTLQWRCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CIT AK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGT DA ICVKGP +TA+D
Sbjct: 61 CITHAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTCDASICVKGPINITAKD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EP DL IGLQIERNRGYRMKTP AQ GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEQD LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ RVTLPFFTFHDGL KL+K K EI LK IFIDQ +LPSRTYNCLK+S I+TLLDLLN
Sbjct: 241 DNQNRVTLPFFTFHDGLAKLKK-KNEIALKFIFIDQSELPSRTYNCLKKSNINTLLDLLN 299
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
KSQEDL+KIE+F IEDV+++LGILQK FVIDLPKNKF
Sbjct: 300 KSQEDLLKIEHFRIEDVKRVLGILQKRFVIDLPKNKF 336
>ref|YP_740597.1| RNA polymerase alpha subunit [Platanus occidentalis]
gi|122166006|sp|Q09G14.1|RPOA_PLAOC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|114054417|gb|ABI49811.1| RNA polymerase alpha subunit
(chloroplast) [Platanus occidentalis]
Length = 337
Score = 581 bits (1498), Expect = e-163
Identities = 289/337 (85%), Positives = 308/337 (91%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+REKV STRTLQWKCVESRADSKRLYYGRF+LSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLIKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTR+A IC++GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVE VD TQHIA+L EPID I L+IERNRGYRMKTP N+Q+GSYPIDAVFMPVR
Sbjct: 121 IISPPSVETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA+E++ LE
Sbjct: 181 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ VTLPFFTFHD L K+RKN+KEI LK IFIDQ +LP RTYNCLKRS IHTLLDL N
Sbjct: 241 DNQNGVTLPFFTFHDRLAKIRKNEKEIALKYIFIDQSELPPRTYNCLKRSNIHTLLDLFN 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
SQEDLMKIE F IEDV+QILGILQKHF +DLPKNKF
Sbjct: 301 NSQEDLMKIEDFRIEDVKQILGILQKHFTVDLPKNKF 337
>ref|YP_001294216.1| RNA polymerase alpha subunit [Buxus microphylla]
gi|172048681|sp|A6MM68.1|RPOA_BUXMI RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|146762316|gb|ABQ45280.1| RNA polymerase alpha subunit
[Buxus microphylla]
Length = 337
Score = 581 bits (1497), Expect = e-163
Identities = 289/337 (85%), Positives = 307/337 (91%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+RE+V TRTLQWKCVESRAD+KRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVRVCTRTLQWKCVESRADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CIT AK EKIPHEYS IVGIEESVHEILMNLKEIVLRSNLYGTRDA ICV+GP +VTAQD
Sbjct: 61 CITCAKSEKIPHEYSNIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEI+DTTQHIASL EPIDL IGLQIERNRGY MKTPKN+Q+G YPIDAVFMPVR
Sbjct: 121 IISPPSVEIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA E++ L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILK 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DNQ +V LP FTFHD L K RKNKKEI +CIFIDQ +LP RTYNCLKRS IHTLLDLLN
Sbjct: 241 DNQNKVALPLFTFHDRLAKQRKNKKEISFQCIFIDQSELPPRTYNCLKRSNIHTLLDLLN 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
SQEDLMKIE+F IEDV+QILGILQKHF IDLPKNKF
Sbjct: 301 NSQEDLMKIEHFRIEDVKQILGILQKHFAIDLPKNKF 337
>ref|YP_009048319.1| DNA-directed RNA polymerase alpha chain (chloroplast) [Magnolia
yunnanensis] gi|573015534|gb|AHF72112.1| DNA-directed RNA
polymerase alpha chain (chloroplast) [Magnolia
yunnanensis]
Length = 337
Score = 580 bits (1496), Expect = e-163
Identities = 290/337 (86%), Positives = 308/337 (91%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+RE+VA STRTLQWKCVESR DSKRLYYGRF+L+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDA ICV+GP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EPIDL I LQIER+RGYRMKTP N Q+GSYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEQD +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DN R T+PFFTFHD L +RKNKK I LKCIFIDQ +LP RTYNCLKRS IHTLLDLL+
Sbjct: 241 DNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLDLLS 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
SQEDLM+IE+F IEDV+QIL ILQKHF IDLPKNKF
Sbjct: 301 NSQEDLMRIEHFRIEDVKQILDILQKHFTIDLPKNKF 337
>ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [Magnolia grandiflora]
gi|372862875|gb|AEX98951.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia grandiflora]
gi|372863045|gb|AEX99119.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia grandiflora]
Length = 337
Score = 580 bits (1494), Expect = e-162
Identities = 290/337 (86%), Positives = 307/337 (91%)
Frame = -3
Query: 1112 MLREKVAASTRTLQWKCVESRADSKRLYYGRFLLSPLMKGQADTIGIAMRRALLGEIEGT 933
M+RE+VA STRTLQWKCVESR DSKRLYYGRF+L+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 932 CITRAKFEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAYICVKGPGYVTAQD 753
CITRAK EK+PHEYSTIVGIEESVH ILMNLKEIVL S+LYGTRDA ICV+GP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLGSHLYGTRDASICVRGPRYVTAQD 120
Query: 752 IILPPSVEIVDTTQHIASLAEPIDLYIGLQIERNRGYRMKTPKNAQEGSYPIDAVFMPVR 573
II PPSVEIVDTTQHIASL EPIDL I LQIER+RGYRMKTP N Q+GSYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 572 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDANLE 393
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEQD NLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDINLE 240
Query: 392 DNQKRVTLPFFTFHDGLDKLRKNKKEIELKCIFIDQLKLPSRTYNCLKRSKIHTLLDLLN 213
DN R T+PFFTFHD L +RKNKK I LKCIFIDQ +LP RTYNCLKRS IHTLLDLL+
Sbjct: 241 DNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLDLLS 300
Query: 212 KSQEDLMKIEYFCIEDVRQILGILQKHFVIDLPKNKF 102
SQEDLM+IE+F IEDV+QIL ILQKHF IDLPKNKF
Sbjct: 301 NSQEDLMRIEHFRIEDVKQILDILQKHFTIDLPKNKF 337