BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00012718
         (1751 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012076580.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   346   e-111
ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   343   e-109
ref|XP_010254390.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   338   e-107
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   334   e-106
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   342   e-104
ref|XP_010921974.1| PREDICTED: probable RNA-dependent RNA polyme...   315   e-103
ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   327   e-103
ref|XP_008778879.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA...   312   e-103
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   323   e-102
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   322   e-101
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   317   e-100
ref|XP_008445204.1| PREDICTED: RNA-dependent RNA polymerase 6 [C...   316   e-100
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   322   2e-99
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   322   2e-99
gb|KDO61726.1| hypothetical protein CISIN_1g041430mg [Citrus sin...   321   2e-99
ref|XP_008394093.1| PREDICTED: RNA-dependent RNA polymerase 6 [M...   318   2e-99
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   317   3e-99
ref|XP_008219491.1| PREDICTED: RNA-dependent RNA polymerase 6 [P...   311   7e-99
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...   311   1e-98
ref|XP_009355733.1| PREDICTED: RNA-dependent RNA polymerase 6 [P...   313   4e-98

>ref|XP_012076580.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
           gi|643724398|gb|KDP33599.1| hypothetical protein
           JCGZ_07170 [Jatropha curcas]
          Length = 1199

 Score =  346 bits (888), Expect(2) = e-111
 Identities = 175/290 (60%), Positives = 216/290 (74%), Gaps = 4/290 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFAS E+A  AKNAAG CEL     PL V+LGPE+ F  N RR+K  PFK  DVC
Sbjct: 77  PHAFVHFASAESATWAKNAAGHCELFLNDRPLKVSLGPENPFHLNQRRRKNIPFKLSDVC 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           +EIGTLVS +EF VGW+GP+SGVDF+VDPFDG+CK  FT +TAFS K T KH +++CDFK
Sbjct: 137 IEIGTLVSRDEFLVGWRGPSSGVDFLVDPFDGTCKFCFTMDTAFSIKDTTKHAIIRCDFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           LEFLVRDI E+KQ              SAP ++YRTADDDI VSVP+DLLDD+DPWIRTT
Sbjct: 197 LEFLVRDINEVKQYTDTSCIVILLQLASAPLVWYRTADDDIEVSVPFDLLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSPRQ-LKVLQEP--AVPTL 151
           DFT SG IGR N Y +S+ PR+GAKL +A   +KERR+   S R+ LK++ EP   +P +
Sbjct: 257 DFTPSGAIGRCNFYRVSIPPRHGAKLKRARNFLKERRVQEDSLRRPLKIVNEPDYGMP-M 315

Query: 150 PNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + FFCI  K+ I+FE++F+VNAV+HKGI NQHQLSD FF+LL+  S ++
Sbjct: 316 SDPFFCIHHKEGIAFEIMFLVNAVMHKGIFNQHQLSDNFFDLLRNQSLDI 365



 Score = 85.9 bits (211), Expect(2) = e-111
 Identities = 36/53 (67%), Positives = 44/53 (83%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            +K EK  V+T+VSFGGFD +V+AKD   +LE+EIG +WRCRLK SWTPPESYP
Sbjct: 4    QKSEKDTVVTQVSFGGFDNHVKAKDLVAYLEEEIGQVWRCRLKTSWTPPESYP 56


>ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
           gi|643731347|gb|KDP38635.1| hypothetical protein
           JCGZ_03988 [Jatropha curcas]
          Length = 1198

 Score =  343 bits (879), Expect(2) = e-109
 Identities = 174/290 (60%), Positives = 214/290 (73%), Gaps = 4/290 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA  E+A  AKNAAGRCEL     PL V+LGPE+ F  N RR+K  P K  DVC
Sbjct: 77  PHAFVHFALAESATWAKNAAGRCELFLNDRPLKVSLGPENPFTLNQRRRKTIPSKLSDVC 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           +EIG +VS +EF VGW+GP SGVDF+VDPFDG+CK  FT++TAFS K T KH V++CDFK
Sbjct: 137 IEIGMMVSRDEFLVGWRGPPSGVDFLVDPFDGTCKFCFTRDTAFSIKDTNKHAVIRCDFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           LEFLVRDI EIKQ              SAP ++YRTADDDI V VP++LLDD+DPWIRTT
Sbjct: 197 LEFLVRDINEIKQYKDTSYLVILLQLASAPWVWYRTADDDIEVLVPFNLLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSPRQ-LKVLQEP--AVPTL 151
           DFT SG IGR NSY +S+ PR+GAKL +AI  +KERR+   S R+ LK+L EP   +P +
Sbjct: 257 DFTPSGAIGRCNSYRVSIPPRHGAKLERAINYLKERRVQVDSLRRPLKILNEPDYGMP-M 315

Query: 150 PNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + FFCI  K+ I+FE++F+VNAV+HKGI NQHQLSD FF+LL+    ++
Sbjct: 316 SDPFFCIHRKEGIAFEIVFLVNAVMHKGIFNQHQLSDDFFDLLRNQPADI 365



 Score = 83.2 bits (204), Expect(2) = e-109
 Identities = 35/56 (62%), Positives = 44/56 (78%)
 Frame = -2

Query: 1027 VGIEKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            +G E+ EK  V+T+VSFGGF+ +V AKD   +LE+ IG +WRCRLK SWTPPESYP
Sbjct: 1    MGTERSEKDTVVTQVSFGGFENHVNAKDLVAYLEEVIGQVWRCRLKTSWTPPESYP 56


>ref|XP_010254390.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
           gi|719995135|ref|XP_010254391.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
           gi|719995138|ref|XP_010254392.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
           gi|719995142|ref|XP_010254393.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
          Length = 1193

 Score =  338 bits (868), Expect(2) = e-107
 Identities = 176/289 (60%), Positives = 214/289 (74%), Gaps = 3/289 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHF SPEAA  A +AAGRC+L+  + PL VNLGP+S F  N RR+KI PFK PD C
Sbjct: 77  PHAFVHFLSPEAATAALDAAGRCDLVLNRHPLKVNLGPQSPFLLNQRRRKIDPFKIPDSC 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           ++IG+LV  +EF V WK P   VDF+VDPFD +CKILFTKETAFSFK T  +VV+KC+FK
Sbjct: 137 IKIGSLVGQDEFVVCWKAPQ--VDFIVDPFDRTCKILFTKETAFSFKDTMAYVVIKCNFK 194

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           LEF V DI  IKQ              S+P I+YRTADDDIY SVP+D+LDDEDPWIRTT
Sbjct: 195 LEFFVSDISYIKQYTGRSSLVILLHLRSSPCIYYRTADDDIYDSVPFDMLDDEDPWIRTT 254

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSPRQ-LKVLQEPAVPTLPN 145
           DFT S VIGR NSY IS+SPR+G +LNK +  +++ RIP  SPR  L++  EP    L +
Sbjct: 255 DFTPSRVIGRCNSYRISISPRFGPRLNKVMNYLRKHRIPDESPRMPLRIRDEPNFGMLMS 314

Query: 144 T-FFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
             FFCI  K+ +SFE IFM+NAV+HKGI+NQHQLSD+FFELL++ S +V
Sbjct: 315 EFFFCIDHKEGMSFETIFMLNAVIHKGIINQHQLSDEFFELLRSQSTDV 363



 Score = 79.3 bits (194), Expect(2) = e-107
 Identities = 38/59 (64%), Positives = 45/59 (76%)
 Frame = -2

Query: 1036 MGSVGIEKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            MGS G + +   M+I++VSFGGFD NV A + T+FLE EIG IWRCRLK S TPPESYP
Sbjct: 1    MGSEGTKND---MIISQVSFGGFDNNVTASELTDFLEKEIGTIWRCRLKTSSTPPESYP 56


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score =  334 bits (856), Expect(2) = e-106
 Identities = 169/289 (58%), Positives = 209/289 (72%), Gaps = 3/289 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFASP++A  AKNAAG CEL +   P+ V+LGPE+ F  N RR+   PFK  DV 
Sbjct: 77  PHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFKLSDVH 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIGTLVS +EF VGW+GP SGVDF+VDPFDG CK  FT++TAFSFK T +H V++CDFK
Sbjct: 137 VEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVIRCDFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           LEFLVRDI EIKQ              SAP ++YRTADDDI V VP+DLLDD+DPWIRTT
Sbjct: 197 LEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSPRQ-LKVLQEPAVP-TLP 148
           DFT SG IGR NSY +S+ PR+GAKL +A+  ++ERR+     R+ L V  EP     + 
Sbjct: 257 DFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPLHVTAEPEYEMPMS 316

Query: 147 NTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
           + FFCI  ++ + F ++F+VNAV+HKGI NQHQLSD FF+LL+    +V
Sbjct: 317 DPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDV 365



 Score = 82.8 bits (203), Expect(2) = e-106
 Identities = 34/53 (64%), Positives = 44/53 (83%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            ++ EK  V+T+VSFGGFDK+V A+D   +L++EIG +WRCRLK SWTPPESYP
Sbjct: 4    KRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYP 56


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
           gi|731385864|ref|XP_010648660.1| PREDICTED:
           RNA-dependent RNA polymerase 6 [Vitis vinifera]
           gi|731385866|ref|XP_010648661.1| PREDICTED:
           RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  342 bits (877), Expect(2) = e-104
 Identities = 171/292 (58%), Positives = 220/292 (75%), Gaps = 6/292 (2%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHF SPEAA  A +AAG+ EL  +  PL V+LGPE+ F  N RR+  +PFKFPDV 
Sbjct: 77  PHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRTTFPFKFPDVR 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           +EIG LVS +E++ GW+GP+SGVDF+VDPFDG+CK LFTK+TAFSFK  PKH V+KC+FK
Sbjct: 137 LEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMPKHAVIKCNFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVR+I E++Q              S+P ++YRTADDDI  +VP+DLLDD+DPWIRTT
Sbjct: 197 VEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPY--SSPR-QLKVLQEP--AVP 157
           DFT SG IGR NSY IS+ PRYGAKL KA+  ++ RR+     SP+ QL+V  EP   +P
Sbjct: 257 DFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRDEPDFGLP 316

Query: 156 TLPNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + + FFCI  K+ I F V+F+VNAV+HKGI+NQHQLSDKFF+LL++  +++
Sbjct: 317 -MSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDI 367



 Score = 68.2 bits (165), Expect(2) = e-104
 Identities = 32/53 (60%), Positives = 39/53 (73%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E  EK MV+T++S GGFD+ V A + T +LED IG + RCRLK S TPPESYP
Sbjct: 4    EGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYP 56


>ref|XP_010921974.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis
           guineensis]
          Length = 1198

 Score =  315 bits (806), Expect(2) = e-103
 Identities = 165/289 (57%), Positives = 207/289 (71%), Gaps = 3/289 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA+P+AA RA NAAG+CELI    PL  N G +SSF+ N RR+   PF+F DV 
Sbjct: 81  PHAFVHFATPDAAKRAINAAGKCELILNGHPLRANSGIDSSFRIN-RRRTTDPFRFVDVG 139

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIGTL S +EF V WKGP  GVDF++DPFDG C+ILF+KETAF+FK   +  V+KCDFK
Sbjct: 140 VEIGTLASRDEFLVAWKGPKLGVDFLIDPFDGCCRILFSKETAFAFKDIKEMAVIKCDFK 199

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVRDI E+K               S P ++YRTADDDI+V+  + LLDDEDPWIRTT
Sbjct: 200 VEFLVRDINEVKLFTDRYPHVMLFQLSSTPWVYYRTADDDIHVTASFSLLDDEDPWIRTT 259

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSP-RQLKVLQEPAVPTL-P 148
           DFT  G I RS+SY +S SPRYG  L K++A ++ERRI    P R L V +EP   TL P
Sbjct: 260 DFTPGGAISRSSSYRVSFSPRYGRILEKSLAYLRERRIAEHWPKRPLAVREEPEFGTLMP 319

Query: 147 NTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
           + FF +  K+ ISF ++F+V+A++HKGIVNQHQLS++FF LL++ S  V
Sbjct: 320 DPFFSVQYKEGISFSIMFLVDALVHKGIVNQHQLSEEFFALLRSQSDAV 368



 Score = 92.0 bits (227), Expect(2) = e-103
 Identities = 40/60 (66%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
 Frame = -2

Query: 1036 MGSVGI-EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            MGS+G  E+++K +V+++VSFGGFD+ V AKD T+F+E E GLIWRCR+KNSWTPPESYP
Sbjct: 1    MGSLGAQERDQKELVVSQVSFGGFDERVSAKDLTDFMEHEAGLIWRCRVKNSWTPPESYP 60


>ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
          Length = 1195

 Score =  327 bits (837), Expect(2) = e-103
 Identities = 168/290 (57%), Positives = 212/290 (73%), Gaps = 4/290 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA PE+A  A +AA RCEL      L  +LGPE+ F  N RR+K  PFK  DV 
Sbjct: 77  PHAFVHFALPESATWAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFKLSDVD 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIGTLVS +EF+VGW+GP +GVDF+VDPFDG+C+  F++ TAFSFKST +H V+KCDFK
Sbjct: 137 VEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVRDI EIKQ              SAP ++YRTADDDI VSVP+DLLDD+DPWIRTT
Sbjct: 197 VEFLVRDINEIKQYKETSCLVLLLQLASAPWVWYRTADDDIEVSVPFDLLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSPRQ-LKVLQEP--AVPTL 151
           DFT SG IGR +SY +S+ PR+G KL KA+  +KERR+     R+ +++  EP   +P +
Sbjct: 257 DFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDEPDFGMP-M 315

Query: 150 PNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + FFCI  K+ I+F+V+F+VNAV+HKGI NQHQLS+ FF+LL+    EV
Sbjct: 316 TDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEV 365



 Score = 79.0 bits (193), Expect(2) = e-103
 Identities = 35/53 (66%), Positives = 40/53 (75%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E   K  V+T+VS GGFD +V AKD   +LE EIGL+WRCRLK SWTPPESYP
Sbjct: 4    EGSAKETVVTQVSIGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYP 56


>ref|XP_008778879.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA
           polymerase SHL2 [Phoenix dactylifera]
          Length = 1198

 Score =  312 bits (800), Expect(2) = e-103
 Identities = 164/286 (57%), Positives = 205/286 (71%), Gaps = 3/286 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA+ +AA RA NAAG+CEL+    PL  N G +SSF+ + RR+ + PF+F DV 
Sbjct: 81  PHAFVHFATLDAAKRAINAAGKCELVLQGCPLRANSGTDSSFRIS-RRRTMDPFRFTDVG 139

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIGTL S +EF V WKGP SGVDF++DPFDG C+ILF+KETAF+FK   +  VLKCDFK
Sbjct: 140 VEIGTLASRDEFLVAWKGPKSGVDFLIDPFDGRCRILFSKETAFAFKDIKEMAVLKCDFK 199

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFL RDI E+K               S P ++YRTADDDI V+ P+ LLDDEDPWIRTT
Sbjct: 200 VEFLARDINEVKLFTDQYPPAMLFQLASTPWVYYRTADDDILVTAPFSLLDDEDPWIRTT 259

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSP-RQLKVLQEPAVPTL-P 148
           DFT  G I R  SY IS SPRYG  L +++A +KERRI    P R L VL+EP   TL P
Sbjct: 260 DFTPGGAISRCCSYRISFSPRYGRILKESLAYLKERRIAEHRPKRPLVVLEEPDFGTLMP 319

Query: 147 NTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNS 10
           + FF +  K+ ISF ++F+V+A++HKGIVNQHQLS++FF LL++ S
Sbjct: 320 DPFFSVQHKEGISFSIMFLVDALVHKGIVNQHQLSEEFFALLRSQS 365



 Score = 92.8 bits (229), Expect(2) = e-103
 Identities = 41/60 (68%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
 Frame = -2

Query: 1036 MGSVGI-EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            MGS+G  E+++K +V+++VSFGGFD+ V AKD T+FLE E GLIWRCR+KNSWTPPESYP
Sbjct: 1    MGSLGADERDQKELVVSQVSFGGFDERVSAKDLTDFLEHEAGLIWRCRVKNSWTPPESYP 60


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1198

 Score =  323 bits (829), Expect(2) = e-102
 Identities = 166/290 (57%), Positives = 211/290 (72%), Gaps = 4/290 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA P++A  A +AA RCEL      L  +LGPE+ F  N RR+K  PFK   V 
Sbjct: 77  PHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFKLSGVG 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIGTLVS +EF+VGW+GP +GVDF+VDPFDG+C+  F++ TAFSFKST +H V+KCDFK
Sbjct: 137 VEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVRDI EIKQ              SAP ++YRTADDDI VSVP+DLLDD+DPWIRTT
Sbjct: 197 VEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSPRQ-LKVLQEP--AVPTL 151
           DFT SG IGR +SY +S+ PR+G KL KA+  +KERR+     R+ +++  EP   +P +
Sbjct: 257 DFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDEPDFGMP-M 315

Query: 150 PNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + FFCI  K+ I+F+V+F+VNAV+HKGI NQHQLS+ FF+LL+    EV
Sbjct: 316 TDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEV 365



 Score = 79.0 bits (193), Expect(2) = e-102
 Identities = 35/53 (66%), Positives = 40/53 (75%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E   K  V+T+VS GGFD +V AKD   +LE EIGL+WRCRLK SWTPPESYP
Sbjct: 4    EGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYP 56


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1200

 Score =  322 bits (826), Expect(2) = e-101
 Identities = 165/293 (56%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA P++A  A NA+GRCEL      L V+LGP++ F  N RR+   PFK  DV 
Sbjct: 77  PHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTTPFKLSDVG 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
            EIG LVS +EF+VGW+GP SGVDF+VDPFDG+CK  F++ TAFS KST +H V+KCDFK
Sbjct: 137 FEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEHAVIKCDFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVRDI EI Q              SAP ++YRTADDDI   VP+DLLDD+DPWIRTT
Sbjct: 197 VEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPY----SSPRQLKVLQEP--AV 160
           DFT SG IGR +SY +S+ PR+G+KL KA+  +KERR+      +  R++++L EP   +
Sbjct: 257 DFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRILDEPDFGM 316

Query: 159 PTLPNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
           P + + FFCI  K+ I+FEV+F+VNAV+HKGI NQHQLS+ FF+LL+    EV
Sbjct: 317 P-MSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEV 368



 Score = 75.1 bits (183), Expect(2) = e-101
 Identities = 33/53 (62%), Positives = 39/53 (73%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E   K  V+T+VS GGFD +V AKD   +L+  IGL+WRCRLK SWTPPESYP
Sbjct: 4    EGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYP 56


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
           gi|462422376|gb|EMJ26639.1| hypothetical protein
           PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  317 bits (811), Expect(2) = e-100
 Identities = 160/289 (55%), Positives = 203/289 (70%), Gaps = 3/289 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHF SP++   A +AAGRCEL +   PL V+LGPE+ +  N RR+   PFK  DV 
Sbjct: 76  PHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRTKTPFKLSDVH 135

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIG+LV  +EF+  W+GP  GVDF+VDPFDG+CK  FT +TAFSFK T KH V+KCDFK
Sbjct: 136 VEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAVIKCDFK 195

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVR+I EIKQ              S+P + YRTADDDI  SVP+DLLDD+DPWIRTT
Sbjct: 196 VEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLLDDDDPWIRTT 255

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSPRQLKVLQEPAVPTLPNT 142
           DFT SG IGR NSY + + PR+GAKL KA+  ++ERR+     +    +Q+     + NT
Sbjct: 256 DFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPKIQDEPDFGMSNT 315

Query: 141 --FFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
             FF I  ++ ISFE++F+VNAV+HKG VNQHQLSD FF LL++  +E+
Sbjct: 316 EPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEI 364



 Score = 79.7 bits (195), Expect(2) = e-100
 Identities = 34/53 (64%), Positives = 41/53 (77%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E  E   V+T+VSFGGF  + RAKD   +LEDEIGL++RCRLK SWTPPES+P
Sbjct: 4    EGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFP 56


>ref|XP_008445204.1| PREDICTED: RNA-dependent RNA polymerase 6 [Cucumis melo]
          Length = 1197

 Score =  316 bits (809), Expect(2) = e-100
 Identities = 162/289 (56%), Positives = 206/289 (71%), Gaps = 3/289 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHF SP++A  A +AAGR EL++    L  +LGPES F  N RR+   PFK  DV 
Sbjct: 76  PHAFVHFVSPDSAAEALHAAGRGELLFNGKLLKASLGPESPFHINQRRRTKVPFKLSDVQ 135

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           V+IG L   + F V W+GP+SG+DF+VDPFDG+CK  FTK+TAFSFK   K+ VLKCD+K
Sbjct: 136 VDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKYTVLKCDYK 195

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           LEF+VRDI +IK+              S+P I+YRTADDDI  SVPYDLLDD+DPWIRTT
Sbjct: 196 LEFIVRDINQIKRYTDTSCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLDDDDPWIRTT 255

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRI-PYSSPRQLKVLQEPAVPT-LP 148
           DFT SG IGR N++ +S+ PRYG KLN A+  +KE+R+   S  R  K+L EP     + 
Sbjct: 256 DFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILNEPDYGVQMT 315

Query: 147 NTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
           + FFCI  K+ ISFE++F+VNAV+HKGI+NQHQ+SD+FF+LL+    EV
Sbjct: 316 DHFFCIFYKEDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEV 364



 Score = 79.7 bits (195), Expect(2) = e-100
 Identities = 36/56 (64%), Positives = 47/56 (83%)
 Frame = -2

Query: 1027 VGIEKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            +G E+ EK +V+T+VSFGGFD +V+A+D  ++LE EIGL+ RCRLK SWTPPESYP
Sbjct: 1    MGSEESEK-IVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYP 55


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
           sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
           sinensis]
          Length = 1197

 Score =  322 bits (824), Expect(2) = 2e-99
 Identities = 164/290 (56%), Positives = 210/290 (72%), Gaps = 4/290 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA P    RA +AAGR EL      L V+LGPE+ F+ N R +   PFK PDVC
Sbjct: 77  PHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTPFKLPDVC 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIGTLVS +EF+V W+GPASG DF+VDPFDG+CK  FT++ AF+ KS+ +H V+KC+FK
Sbjct: 137 VEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVR+I  +KQ +            S+P ++YRTADDDI V VP+D+LDD+DPWIRTT
Sbjct: 197 VEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSS-PRQLKVLQEP--AVPTL 151
           DFT SG IGR NSY IS+S R+  KL+K I  + ERR+   S  R + + +EP   VP +
Sbjct: 257 DFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVP-M 315

Query: 150 PNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + FFCI  ++ ISFE++F+VNAV+HKGI+NQHQLSD FF+LL+  SREV
Sbjct: 316 SDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV 365



 Score = 71.6 bits (174), Expect(2) = 2e-99
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E  EK +V  +VSFGGFD+NV+A +   +LE+E+G +WRCRLK S TP ESYP
Sbjct: 4    EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYP 56


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
           sinensis]
          Length = 1025

 Score =  322 bits (824), Expect(2) = 2e-99
 Identities = 164/290 (56%), Positives = 210/290 (72%), Gaps = 4/290 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA P    RA +AAGR EL      L V+LGPE+ F+ N R +   PFK PDVC
Sbjct: 77  PHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTPFKLPDVC 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIGTLVS +EF+V W+GPASG DF+VDPFDG+CK  FT++ AF+ KS+ +H V+KC+FK
Sbjct: 137 VEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVR+I  +KQ +            S+P ++YRTADDDI V VP+D+LDD+DPWIRTT
Sbjct: 197 VEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSS-PRQLKVLQEP--AVPTL 151
           DFT SG IGR NSY IS+S R+  KL+K I  + ERR+   S  R + + +EP   VP +
Sbjct: 257 DFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVP-M 315

Query: 150 PNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + FFCI  ++ ISFE++F+VNAV+HKGI+NQHQLSD FF+LL+  SREV
Sbjct: 316 SDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV 365



 Score = 71.6 bits (174), Expect(2) = 2e-99
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E  EK +V  +VSFGGFD+NV+A +   +LE+E+G +WRCRLK S TP ESYP
Sbjct: 4    EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYP 56


>gb|KDO61726.1| hypothetical protein CISIN_1g041430mg [Citrus sinensis]
          Length = 1197

 Score =  321 bits (823), Expect(2) = 2e-99
 Identities = 164/290 (56%), Positives = 210/290 (72%), Gaps = 4/290 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA P    RA +AAGR EL      L V+LGPE+ F+ N R +   PFK PDVC
Sbjct: 77  PHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTSTPFKLPDVC 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIGTLVS +EF+V W+GPASG DF+VDPFDG+CK  FT++ AF+ KS+ +H V+KC+FK
Sbjct: 137 VEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVR+I  +KQ +            S+P ++YRTADDDI V VP+D+LDD+DPWIRTT
Sbjct: 197 VEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSS-PRQLKVLQEP--AVPTL 151
           DFT SG IGR NSY IS+S R+  KL+K I  + ERR+   S  R + + +EP   VP +
Sbjct: 257 DFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVP-M 315

Query: 150 PNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + FFCI  ++ ISFE++F+VNAV+HKGI+NQHQLSD FF+LL+  SREV
Sbjct: 316 SDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV 365



 Score = 71.6 bits (174), Expect(2) = 2e-99
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E  EK +V  +VSFGGFD+NV+A +   +LE+E+G +WRCRLK S TP ESYP
Sbjct: 4    EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYP 56


>ref|XP_008394093.1| PREDICTED: RNA-dependent RNA polymerase 6 [Malus domestica]
           gi|658003179|ref|XP_008394094.1| PREDICTED:
           RNA-dependent RNA polymerase 6 [Malus domestica]
          Length = 1197

 Score =  318 bits (814), Expect(2) = 2e-99
 Identities = 162/290 (55%), Positives = 204/290 (70%), Gaps = 4/290 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA PE+   A +AAGR +L Y   PL V+LGPE+ +  N RR+   PFK  DVC
Sbjct: 77  PHAFVHFAMPESVTFAMDAAGRSQLFYNNEPLKVSLGPENPYFLNRRRRDKTPFKLSDVC 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           V+IG+LV  +EF+V W+GP  GVDF+VDPFDG+CK  FT++TAFSFK   KH V+KCDF 
Sbjct: 137 VDIGSLVRQDEFFVAWRGPTYGVDFIVDPFDGTCKFCFTRDTAFSFKGIKKHAVIKCDFM 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVRD+ EIKQ              S+P + YRTADDDI  SVP++LLDD+DPWIRTT
Sbjct: 197 VEFLVRDVSEIKQYTDTAYHVILLRLASSPWVSYRTADDDIDQSVPFNLLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRI-PYSSPRQLKVLQEP--AVPTL 151
           DFT SG IGR N Y +S+ PR+GAKL + +  ++E R+      R  KV  EP   +P  
Sbjct: 257 DFTPSGAIGRCNCYRVSIPPRHGAKLKRTMDYLREHRVREVCLKRPPKVQNEPDFGMPA- 315

Query: 150 PNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + FFCI  KD ISFE++F+VNAV+HKGI NQHQLSD FF+LL++  +EV
Sbjct: 316 SDPFFCIHYKDDISFEIMFLVNAVMHKGIFNQHQLSDSFFDLLRSQPKEV 365



 Score = 75.1 bits (183), Expect(2) = 2e-99
 Identities = 31/53 (58%), Positives = 42/53 (79%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E  E + V+T++SFGGF ++V+A D   +LEDEIGL++RCRLK SWTP ES+P
Sbjct: 4    EASETSTVVTQLSFGGFGRHVKASDLVTYLEDEIGLVYRCRLKTSWTPQESFP 56


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
           gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
           6 [Theobroma cacao]
          Length = 1197

 Score =  317 bits (811), Expect(2) = 3e-99
 Identities = 158/289 (54%), Positives = 208/289 (71%), Gaps = 3/289 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFASP  A  A +AAGR EL++    L V+LGPE+ +  N RR+   PFK  DVC
Sbjct: 77  PHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRNTTPFKLSDVC 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           ++IG +VS +EF+VGW+GP  GVDF+VDPFDG+CK  F+++TAFSFK T ++ V+KCDFK
Sbjct: 137 LDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTTEYAVIKCDFK 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVRDI EIKQ              S+P ++YRTADD+I  SVP+DLLDD+D WIRTT
Sbjct: 197 VEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLLDDDDQWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSPR-QLKVLQEPAV-PTLP 148
           DFT SG IGR N+Y + + PR+GAKL KA+  ++E+R+P    R  L++  EP    ++ 
Sbjct: 257 DFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRISDEPDFGRSMS 316

Query: 147 NTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
           + F+CI  K+ I FE++F+VNAV+HKGI NQHQLS+ FF LL+   REV
Sbjct: 317 DPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREV 365



 Score = 75.5 bits (184), Expect(2) = 3e-99
 Identities = 30/50 (60%), Positives = 40/50 (80%)
 Frame = -2

Query: 1009 EKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            EK  V+T+VS GGF ++V AKD   + ++E+G++WRCRLK SWTPPESYP
Sbjct: 7    EKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYP 56


>ref|XP_008219491.1| PREDICTED: RNA-dependent RNA polymerase 6 [Prunus mume]
          Length = 1196

 Score =  311 bits (796), Expect(2) = 7e-99
 Identities = 159/289 (55%), Positives = 202/289 (69%), Gaps = 3/289 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHF SP++   A +AAGRCEL     PL V++G E+ +  N RR+   PFK  DV 
Sbjct: 76  PHAFVHFVSPDSVTFAMDAAGRCELFLNNEPLKVSMGLENPYFLNRRRRTKTPFKLSDVH 135

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIG+LV  +EF+V W+GP  GVDF+VDPFDG+CK  FT +TAFSFK T KH V+KCDFK
Sbjct: 136 VEIGSLVRQDEFFVSWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAVIKCDFK 195

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVR+I EIKQ              S+P + YRTADDDI  SVP+DLLDD+DPWIRTT
Sbjct: 196 VEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLLDDDDPWIRTT 255

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRIPYSSPRQLKVLQEPAVPTLPNT 142
           DFT SG IGR NSY + + PR+GAKL KA+  ++ERR+     +    +Q+     + NT
Sbjct: 256 DFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPRIQDEPDFGMSNT 315

Query: 141 --FFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
             FF I  ++ ISFE++F+VNAV+HKG VNQHQLSD FF LL++  +E+
Sbjct: 316 EPFFSIQYEEDISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEI 364



 Score = 80.1 bits (196), Expect(2) = 7e-99
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E  E   V+T+VSFGGF  +VRAKD   +LEDEIG+++RCRLK SWTPPES+P
Sbjct: 4    EGSENGSVVTQVSFGGFQHHVRAKDLVTYLEDEIGVVYRCRLKTSWTPPESFP 56


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
           gi|778665461|ref|XP_011648568.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X1 [Cucumis
           sativus] gi|316989907|gb|ADU77019.1| RNA-dependent RNA
           polymerase 6 [Cucumis sativus]
           gi|700207828|gb|KGN62947.1| hypothetical protein
           Csa_2G381730 [Cucumis sativus]
          Length = 1197

 Score =  311 bits (798), Expect(2) = 1e-98
 Identities = 159/289 (55%), Positives = 202/289 (69%), Gaps = 3/289 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHF SP++A  A +AAGR ELI+    L  +LGPES F  N RR+   PFK  DV 
Sbjct: 76  PHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHINQRRRTKVPFKLSDVQ 135

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           V+IG L   + F V W+GP+SG+DF+VDPFDG+CK  FTK+TAFSFK   KH  LKCD+K
Sbjct: 136 VDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKHTFLKCDYK 195

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EF+VRDI +I +              ++P I+YRTADDDI   VPYDLLDD+DPWIRTT
Sbjct: 196 MEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKLVPYDLLDDDDPWIRTT 255

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRI-PYSSPRQLKVLQEPAVPT-LP 148
           DFT SG IGR N++ +S+ PRYG KLN A+  +KE+R+   S  R  K+L EP     + 
Sbjct: 256 DFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILNEPDYGVQMT 315

Query: 147 NTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
           + FFCI  K  ISFE++F+VNAV+HKGI+NQHQ+SD+FF+LL+    EV
Sbjct: 316 DHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEV 364



 Score = 79.0 bits (193), Expect(2) = 1e-98
 Identities = 36/56 (64%), Positives = 47/56 (83%)
 Frame = -2

Query: 1027 VGIEKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            +G E+ EK +V+T+VSFGGFD +V+A+D  ++LE EIGL+ RCRLK SWTPPESYP
Sbjct: 1    MGSEEGEK-IVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYP 55


>ref|XP_009355733.1| PREDICTED: RNA-dependent RNA polymerase 6 [Pyrus x bretschneideri]
           gi|694330031|ref|XP_009355734.1| PREDICTED:
           RNA-dependent RNA polymerase 6 [Pyrus x bretschneideri]
          Length = 1197

 Score =  313 bits (803), Expect(2) = 4e-98
 Identities = 163/290 (56%), Positives = 203/290 (70%), Gaps = 4/290 (1%)
 Frame = -3

Query: 858 PHAFVHFASPEAAIRAKNAAGRCELIYYQSPLMVNLGPESSFQTNLRRQKIYPFKFPDVC 679
           PHAFVHFA  E+   A +AAGR +L Y   PL V+LGPE+ +  N RR+   PFK  DVC
Sbjct: 77  PHAFVHFAMTESVTSAMDAAGRSQLFYNNEPLKVSLGPENPYFLNRRRRDKTPFKLSDVC 136

Query: 678 VEIGTLVSLNEFWVGWKGPASGVDFVVDPFDGSCKILFTKETAFSFKSTPKHVVLKCDFK 499
           VEIG+LV  +EF+V W+GPA GVDF+VD FDG+CK  FT++ AFSFK   KH V+KCDF 
Sbjct: 137 VEIGSLVHQDEFFVAWRGPAYGVDFIVDAFDGTCKFCFTRDIAFSFKGIRKHAVIKCDFM 196

Query: 498 LEFLVRDIVEIKQCNXXXXXXXXXXXXSAPHIFYRTADDDIYVSVPYDLLDDEDPWIRTT 319
           +EFLVRDI EIKQ              S+P + YRTADDDI  SVP++LLDD+DPWIRTT
Sbjct: 197 VEFLVRDISEIKQYTDTAYHVILLRLASSPLVSYRTADDDIDQSVPFNLLDDDDPWIRTT 256

Query: 318 DFT-SGVIGRSNSYMISMSPRYGAKLNKAIANIKERRI-PYSSPRQLKVLQEP--AVPTL 151
           DFT SG IGR N Y +S+ PR+GAKL + +A ++E R+      R  KV  EP   +P  
Sbjct: 257 DFTPSGAIGRCNCYRVSIPPRHGAKLKRTMAYLRECRVREVCLKRPPKVQNEPDFGMPA- 315

Query: 150 PNTFFCIPCKDAISFEVIFMVNAVLHKGIVNQHQLSDKFFELLKTNSREV 1
            + FFCI  KD ISFE++F+VNAV+HKGI NQHQLSD FF+LL++  +EV
Sbjct: 316 SDPFFCIHYKDDISFEIMFLVNAVMHKGIFNQHQLSDSFFDLLRSQPKEV 365



 Score = 75.1 bits (183), Expect(2) = 4e-98
 Identities = 31/53 (58%), Positives = 42/53 (79%)
 Frame = -2

Query: 1018 EKEEKAMVITRVSFGGFDKNVRAKDFTNFLEDEIGLIWRCRLKNSWTPPESYP 860
            E  E + V+T++SFGGF ++V+A D   +LEDEIGL++RCRLK SWTP ES+P
Sbjct: 4    EASETSTVVTQLSFGGFGRHVKASDLVTYLEDEIGLVYRCRLKTSWTPQESFP 56