BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00010756
         (1973 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC ...   541   e-150
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC ...   491   e-135
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   485   e-134
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   468   e-128
ref|XP_008220144.1| PREDICTED: RNA polymerase sigma factor sigC-...   461   e-126
gb|AKC88685.1| sigma factor [Francoa sonchifolia]                     459   e-126
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   457   e-125
ref|XP_011019551.1| PREDICTED: RNA polymerase sigma factor sigC ...   456   e-125
gb|AKC88689.1| sigma factor [Hypseocharis bilobata]                   454   e-124
ref|XP_009367413.1| PREDICTED: RNA polymerase sigma factor sigC-...   452   e-124
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   447   e-122
ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC ...   446   e-122
gb|KDO79960.1| hypothetical protein CISIN_1g009449mg [Citrus sin...   445   e-122
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   442   e-121
ref|XP_010909938.1| PREDICTED: RNA polymerase sigma factor sigC ...   441   e-121
ref|XP_009361495.1| PREDICTED: RNA polymerase sigma factor sigC-...   441   e-121
ref|XP_012857954.1| PREDICTED: RNA polymerase sigma factor sigC ...   441   e-120
ref|XP_008365120.1| PREDICTED: RNA polymerase sigma factor sigC-...   441   e-120
ref|XP_009370149.1| PREDICTED: RNA polymerase sigma factor sigC-...   440   e-120
ref|XP_006853783.2| PREDICTED: RNA polymerase sigma factor sigC ...   438   e-120

>ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
            gi|720088207|ref|XP_010244379.1| PREDICTED: RNA
            polymerase sigma factor sigC [Nelumbo nucifera]
          Length = 558

 Score =  541 bits (1393), Expect = e-150
 Identities = 291/552 (52%), Positives = 379/552 (68%), Gaps = 3/552 (0%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYAS 1794
            KW   ++S  L+  ST  + HS+ V S EA +ESAR   LS  PE+ ET  KD LK YA 
Sbjct: 8    KWVFPVQSHLLSHSST--RNHSSFVRSREAYFESARMSFLSVIPEESETLQKDPLKAYAC 65

Query: 1793 SLGALQVVETRSKEL--KTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFN 1620
            S G LQ V      +  K N  K    ++Y    DI +     +S     LQ ++ S F+
Sbjct: 66   SSGTLQPVNNGYAAIGVKMNTSKEFHNSLYDTFEDISIATPEDSSAFLASLQARKISCFS 125

Query: 1619 LLYKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTK 1440
            LL +NVEKIE+IF+  D + LE+ IL+QL KLGAL LF ACLSRT+ V + ++    L +
Sbjct: 126  LLMENVEKIEDIFVSSDLIRLEKGILVQLEKLGALNLFHACLSRTVKVSSALNLHSALKE 185

Query: 1439 HPKDFLIMGETDEQVGKILVSSXXXXXXXXXXXKISDKAAKISALGSSSKTN-KLPRRAI 1263
              K +L+ GE  + V  I V S           + S +A+K  AL SS K     P+++ 
Sbjct: 186  CSKKYLMDGEMSDHVDHITVPSRRKEERKLRRERESKRASKKPALKSSPKCGIGGPQQST 245

Query: 1262 GSTVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGV 1083
             S                RNE+EMS  VK+V+ LER+++ LE E G+V +FS WAEAVG+
Sbjct: 246  ISIAKRPASAKSRRLMIARNESEMSRAVKEVSCLERIRSNLEEELGRVISFSSWAEAVGL 305

Query: 1082 DEKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFD 903
            DEK LQQRLH+GW+CRD LLRST SL+VYLARNYRGLGI+ EDL QAGN GVL+GAERFD
Sbjct: 306  DEKELQQRLHFGWYCRDKLLRSTRSLVVYLARNYRGLGIAFEDLLQAGNFGVLQGAERFD 365

Query: 902  HERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDD 723
            H RGY+FSTYVQYWIRK MS+ + QHSR +HIP+TLSR INQI K RK+ ++ +GRYPDD
Sbjct: 366  HTRGYRFSTYVQYWIRKSMSTLVAQHSRGVHIPLTLSRAINQIHKTRKSFFNTHGRYPDD 425

Query: 722  EEIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHM 543
            +EI++ + LS+ K+R A KC R+VGS+D+K+GD L+ KF EF PDTSIK+PE+IVMR+HM
Sbjct: 426  DEISKCTGLSVAKVRLAGKCLRVVGSIDQKMGDSLTVKFMEFMPDTSIKTPEDIVMRQHM 485

Query: 542  QKDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRK 363
            +KD+++LLQGL PRE +VL LRYG  DG+C+SLEEI R+F  +KEWIRKIEK+A+TK+R 
Sbjct: 486  RKDIHKLLQGLHPRERKVLVLRYGLCDGRCRSLEEIGRLFNVTKEWIRKIEKAAMTKVRT 545

Query: 362  EETERNLNQYLN 327
            EE +RNL++YL+
Sbjct: 546  EEVQRNLSEYLH 557


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  491 bits (1264), Expect = e-135
 Identities = 273/553 (49%), Positives = 355/553 (64%), Gaps = 4/553 (0%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYAS 1794
            KW   I  P L    + L   ++SV   EAS++S R    S T ED E+  KD  K +A 
Sbjct: 10   KWDFPISCPTLTNSPSRLC--TSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFAC 67

Query: 1793 SLGALQVVE---TRSKELKTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHF 1623
            S GALQ  E   +  + +K    K     ++  +   + PI    S S  GLQ  + S F
Sbjct: 68   SSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQASKASQF 127

Query: 1622 NLLYKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLT 1443
            +LL +N++ +EE+F D + V LERDI++QLG+LGAL+LFQ CLSRTL   T+ D     T
Sbjct: 128  SLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPT 187

Query: 1442 KHPKDFLIMGETDEQVGKILVSSXXXXXXXXXXXKISDKAAKISALGSSSKT-NKLPRRA 1266
            +H ++    G  D+ + K++V S           +  +KA  I A    SKT  K P R 
Sbjct: 188  EHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRP 247

Query: 1265 IGSTVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVG 1086
              STV              +NEAEMS GVK VA+LER++  LE E G VA+ S WAEA G
Sbjct: 248  SVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAG 307

Query: 1085 VDEKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERF 906
            VD+KVLQQ+L +GW+CRD LLRSTHSL++Y+ARNYRG+G++ ED+ QAGN+GVL+GAERF
Sbjct: 308  VDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERF 367

Query: 905  DHERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPD 726
            DH +GY+FSTYVQYWIRK MS+ + +H+R + IP TL+R I QI+KARK LY  +GRYPD
Sbjct: 368  DHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPD 427

Query: 725  DEEIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKH 546
            D EIA+F+ LSL KIR A  C R+VGS D+   D   A   EFTPDTSIKSPEE  M++ 
Sbjct: 428  DNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQC 487

Query: 545  MQKDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLR 366
             +KD++ LL+GL PRE ++L LRYGF + Q KSLEEI R F  SKEWIRK+EK+AL  LR
Sbjct: 488  KRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLR 547

Query: 365  KEETERNLNQYLN 327
             EE  +NL  Y++
Sbjct: 548  DEEICQNLRHYVD 560


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  485 bits (1248), Expect = e-134
 Identities = 265/525 (50%), Positives = 344/525 (65%), Gaps = 4/525 (0%)
 Frame = -1

Query: 1889 EASYESARAFILSATPEDGETHCKDSLKTYASSLGALQVVE---TRSKELKTNFDKGLQR 1719
            EAS++S R    S T ED E+  KD  K +A S GALQ  E   +  + +K    K    
Sbjct: 86   EASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHG 145

Query: 1718 AMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLLYKNVEKIEEIFLDEDFVTLERDILI 1539
             ++  +   + PI    S S  GLQ  + S F+LL +N++ +EE+F D + V LERDI++
Sbjct: 146  DLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMV 205

Query: 1538 QLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHPKDFLIMGETDEQVGKILVSSXXXXX 1359
            QLG+LGAL+LFQ CLSRTL   T+ D     T+H ++    G  D+ + K++V S     
Sbjct: 206  QLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEE 265

Query: 1358 XXXXXXKISDKAAKISALGSSSKT-NKLPRRAIGSTVGNXXXXXXXXXXXXRNEAEMSMG 1182
                  +  +KA  I A    SKT  K P R   STV              +NEAEMS G
Sbjct: 266  RKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKG 325

Query: 1181 VKDVADLERMKTMLEVESGQVATFSRWAEAVGVDEKVLQQRLHYGWFCRDMLLRSTHSLI 1002
            VK VA+LER++  LE E G VA+ S WAEA GVD+KVLQQ+L +GW+CRD LLRSTHSL+
Sbjct: 326  VKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLV 385

Query: 1001 VYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHERGYQFSTYVQYWIRKEMSSFIEQHS 822
            +Y+ARNYRG+G++ ED+ QAGN+GVL+GAERFDH +GY+FSTYVQYWIRK MS+ + +H+
Sbjct: 386  LYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHA 445

Query: 821  REIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEEIARFSSLSLTKIRFARKCPRIVGSV 642
            R + IP TL+R I QI+KARK LY  +GRYPDD EIA+F+ LSL KIR A  C R+VGS 
Sbjct: 446  RGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGST 505

Query: 641  DRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQKDVYELLQGLLPRESEVLFLRYGFWD 462
            D+   D   A   EFTPDTSIKSPEE  M++  +KD++ LL+GL PRE ++L LRYGF +
Sbjct: 506  DQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGE 565

Query: 461  GQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEETERNLNQYLN 327
             Q KSLEEI R F  SKEWIRK+EK+AL  LR EE  +NL  Y++
Sbjct: 566  QQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVD 610


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
            gi|462419859|gb|EMJ24122.1| hypothetical protein
            PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  468 bits (1203), Expect = e-128
 Identities = 261/536 (48%), Positives = 343/536 (63%), Gaps = 5/536 (0%)
 Frame = -1

Query: 1919 KQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYASSLGALQVVE---TRSKEL 1749
            K  STSV   E S+ SAR   LS   E+GE   KD LK Y     + Q++E   +  +E+
Sbjct: 27   KISSTSVRGREGSFNSARLSFLSVISEEGEASSKDPLKVYTFPSASPQILEDGVSELEEV 86

Query: 1748 KTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLLYKNVEKIEEIFLDED 1569
            KT F     R +     D +MP+     IS +GL+    SHF+LL +N+  +EE F   D
Sbjct: 87   KTAF-----RRVPKSFSDNQMPVAEGKFISSKGLEACTASHFSLLLQNLNVLEETFATSD 141

Query: 1568 FVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHPKDFLIMGETDEQVGK 1389
             + LE++IL+QL +LGAL+LF  CLSRTL   + +D S   T   ++  +  + D  VG+
Sbjct: 142  VLKLEKEILLQLARLGALKLFDICLSRTLKTSSFLDLSDIPTVPVEEGKMERKEDNNVGE 201

Query: 1388 ILVSSXXXXXXXXXXXKISDKAAKISALGSSS--KTNKLPRRAIGSTVGNXXXXXXXXXX 1215
            I+V S              +     ++L   +  K  K P  + G    N          
Sbjct: 202  IIVRSGKKEERRSRKRTSDNAIVSSNSLPPKTIWKGLKKPTLSSGKRASNYRSRRLTISK 261

Query: 1214 XXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVDEKVLQQRLHYGWFCR 1035
               NEAEMS+GVK +ADLER+K  LE E+G+VAT   WAEA GV EKVL Q L +GW+C+
Sbjct: 262  ---NEAEMSIGVKVIADLERIKETLEKETGKVATLRCWAEAAGVHEKVLLQHLRFGWYCQ 318

Query: 1034 DMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHERGYQFSTYVQYWIR 855
            D L+RST SL++YLARNYRGLG++ +DL QAGN+G+L+GAERFDH RGY+FSTYVQYWIR
Sbjct: 319  DELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIR 378

Query: 854  KEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEEIARFSSLSLTKIRF 675
            K MS  + QH+R + IP TLS+ INQI+KARK  Y+ + +YPDDEEIA+ + LSL +IR 
Sbjct: 379  KSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLARIRS 438

Query: 674  ARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQKDVYELLQGLLPRES 495
            A  C R+VGSVD K+ +     + EFTPDTS+KSPEE VMR+HM+KD+++LL+GL  RE 
Sbjct: 439  ASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQHMKKDIHDLLKGLNLRER 498

Query: 494  EVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEETERNLNQYLN 327
            +VL LRYG  +   KSLEEI R+F  SKEWIRKIEK AL KLR EE+ + L+ YLN
Sbjct: 499  QVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLRVEESHKYLSHYLN 554


>ref|XP_008220144.1| PREDICTED: RNA polymerase sigma factor sigC-like [Prunus mume]
          Length = 553

 Score =  461 bits (1185), Expect = e-126
 Identities = 260/539 (48%), Positives = 343/539 (63%), Gaps = 8/539 (1%)
 Frame = -1

Query: 1919 KQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYASSLGALQVVETRSKELKTN 1740
            K  STSV   E S+ SAR   LS   E+GE   KD LK Y     + Q++E    E+   
Sbjct: 27   KLSSTSVRGREGSFNSARLSFLSVISEEGEASSKDPLKVYTCPSASPQILEDGVSEM--- 83

Query: 1739 FDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLLYKNVEKIEEIFLDEDFVT 1560
             ++   R +   I D RMP+     IS +GL+    SHF+LL +N+  +EE F   + + 
Sbjct: 84   -EEAAFRRVPKSISDNRMPVAEGKFISSKGLEACTASHFSLLLQNLNVLEETFATSNVLK 142

Query: 1559 LERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHPKDFLIMGETDEQVGKILV 1380
            LE++IL+QL +LGAL+LF  CLSRTL   + +D S   T   ++  +  + D  V +I+V
Sbjct: 143  LEKEILLQLARLGALKLFDICLSRTLKTSSFLDLSDIPTVPVEEGKMERKEDNNVFEIIV 202

Query: 1379 SSXXXXXXXXXXXKISDKAAKISALGSSSKTNKLPRRAIGSTVGNXXXXXXXXXXXXR-- 1206
             S             S K    +A+ SS   N LP + I   + N            R  
Sbjct: 203  RSGKKEERR------SRKRTSDNAIVSS---NSLPPKTIWKGLKNPTLSSGKRASNYRSR 253

Query: 1205 ------NEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVDEKVLQQRLHYGW 1044
                  NEAEMS+GVK +ADLER+K  LE E+G+V T   WAEA GV E+VL Q L +GW
Sbjct: 254  RLTISKNEAEMSIGVKVIADLERIKETLEKETGKVVTLRCWAEAAGVHERVLLQHLRFGW 313

Query: 1043 FCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHERGYQFSTYVQY 864
            +C+D L+RST SL++YLARNYRGLG++ +DL QAGN+G+L+GAERFDH RGY+FSTYVQY
Sbjct: 314  YCQDELMRSTRSLVLYLARNYRGLGVALDDLIQAGNLGLLQGAERFDHSRGYRFSTYVQY 373

Query: 863  WIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEEIARFSSLSLTK 684
            WIRK MS  + QH+R + IP TLS+ INQI+KARK  Y+ + +YPDDEEIA+ + LSL +
Sbjct: 374  WIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLAR 433

Query: 683  IRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQKDVYELLQGLLP 504
            IR A  C R+VGSVD K+ +     + EFTPDTS+KSPEE VMR+HM+KD+++LL+GL  
Sbjct: 434  IRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQHMKKDIHDLLKGLNL 493

Query: 503  RESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEETERNLNQYLN 327
            RE +VL LRYG  +   KSLEEI R+F  SKEWIRKIEK AL KL+ EE+ + L+ YLN
Sbjct: 494  RERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLKVEESHKYLSHYLN 552


>gb|AKC88685.1| sigma factor [Francoa sonchifolia]
          Length = 540

 Score =  459 bits (1182), Expect = e-126
 Identities = 265/549 (48%), Positives = 346/549 (63%), Gaps = 1/549 (0%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYAS 1794
            KWG  I+S  L    + L   S+SV   EAS  SAR   LS   E+GET  +  +K YA 
Sbjct: 8    KWGFPIQSHSLPNSPSRLC--SSSVRGREASINSARLSFLSIISEEGETLRRVLVKAYAC 65

Query: 1793 SLGALQVVETRSKELKTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLL 1614
            S  A Q++E  +              ++  I D   P +   S S   ++ ++ SHF LL
Sbjct: 66   SFAARQMLEKEN--------------LHSMIDD--NPTEEGKSTSQMSVEARKASHFRLL 109

Query: 1613 YKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHP 1434
             +N++ +E+ F D   + LE DIL+QL +LGA  LF  CLS+TL    + D S    +H 
Sbjct: 110  VQNLDVLEKTFADSSVLRLESDILLQLERLGARNLFDTCLSKTL--EDSNDLSNVPIEHM 167

Query: 1433 KDFLIMGETDEQVGKILVSSXXXXXXXXXXXKISDKAAKISALGSSSKT-NKLPRRAIGS 1257
            ++   +   D+Q+GKI V S           + S+ A+KIS++   SKT  K  ++   S
Sbjct: 168  EEQKTVIAMDDQIGKIFVCSRKKEERKSKRARASENASKISSMPLRSKTARKGYQQPAHS 227

Query: 1256 TVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVDE 1077
            +               RNEAEMS GVK + DLER++T LE E+G+V + S WAEA G+DE
Sbjct: 228  SSKRGSNSRGRRLMIARNEAEMSRGVKVIQDLERIRTTLEKETGRVVSLSTWAEAAGIDE 287

Query: 1076 KVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHE 897
            KVL Q L YGW+CRD LLRST SL++YLARNYRGLGI+SEDL QAG +GVL+GAERFDH 
Sbjct: 288  KVLNQDLRYGWYCRDELLRSTRSLVLYLARNYRGLGIASEDLLQAGKLGVLQGAERFDHT 347

Query: 896  RGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEE 717
            RGY+ STYVQYWIRK MS  + QH+R + IP TLSR IN+++KARK L + +G+YPDD E
Sbjct: 348  RGYKLSTYVQYWIRKSMSRMVAQHARGVQIPYTLSRVINRVQKARKALSNSHGKYPDDAE 407

Query: 716  IARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQK 537
            IA+ + +SL KIR A+KC R+VGS+D+K+      K+ E TPD SI  PEE V+R+HM K
Sbjct: 408  IAKATGISLEKIRSAKKCLRVVGSIDQKMEGCFGVKYMELTPDISIPCPEETVIRQHMIK 467

Query: 536  DVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEE 357
            D+Y  LQGL  RE +VL LRYG  +   KSLEEI R+F  SKEWIR++EK ALT LRKEE
Sbjct: 468  DLYNHLQGLDQREMQVLILRYGLNNHHPKSLEEIGRLFCVSKEWIRRVEKKALTNLRKEE 527

Query: 356  TERNLNQYL 330
            T R+L  YL
Sbjct: 528  TRRSLIHYL 536


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
            gi|222854562|gb|EEE92109.1| hypothetical protein
            POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  457 bits (1175), Expect = e-125
 Identities = 255/553 (46%), Positives = 353/553 (63%), Gaps = 5/553 (0%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYAS 1794
            KWGS ++S      ++M    S S    EAS   AR   LS   E+G+   K S K++A 
Sbjct: 10   KWGSPMQSHSATNSTSMFS--SFSARGMEASVNQARLSFLSVVSEEGDILNKHSFKSFAC 67

Query: 1793 SLGALQVVET--RSKELKTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFN 1620
            S  A  V     + + LK N DK    ++   +G+ ++ ++   S S   L+ +  S  +
Sbjct: 68   SSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLRERMTSRIS 127

Query: 1619 LLYKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTK 1440
             L  N++ +E++  D D + LERDIL+QLG+LGAL+ F ACLSRTL     +D S   T+
Sbjct: 128  FLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLDLSAVPTE 187

Query: 1439 HPKDFLIMGETDEQVGKILV-SSXXXXXXXXXXXKISDKAAKISALGSSSKT--NKLPRR 1269
            +  +    G   +  GK +V +              SD   K ++L   SKT  N LP+ 
Sbjct: 188  NTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKP 247

Query: 1268 AIGSTVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAV 1089
                 V              RNEA+M+ GVK  +DLER++T LE E+GQV + S WAEA 
Sbjct: 248  TF---VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEAT 304

Query: 1088 GVDEKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAER 909
            G+D+KVLQQ+L +GW+CRD L+++THSL++Y+ARNYRG+GI+ EDL QAGN+G+L+GAER
Sbjct: 305  GLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAER 364

Query: 908  FDHERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYP 729
            FD  RGY+FSTYVQYWIRK M   +E+H+R I IP  LSR IN+I+KARK L + +GRYP
Sbjct: 365  FDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYP 424

Query: 728  DDEEIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRK 549
            DD E+A+F+ LSL KI  A+KC R+V S+D+KIG+   AK++EF PD SI++PEE VMR+
Sbjct: 425  DDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQ 484

Query: 548  HMQKDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKL 369
            HM++++Y+LL+GL  RE +V+ LRYGF D Q KSL EI R+FR SKE +RKIEK  + KL
Sbjct: 485  HMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKL 544

Query: 368  RKEETERNLNQYL 330
            R E   RNL++Y+
Sbjct: 545  RDEGIRRNLSRYM 557


>ref|XP_011019551.1| PREDICTED: RNA polymerase sigma factor sigC [Populus euphratica]
          Length = 559

 Score =  456 bits (1173), Expect = e-125
 Identities = 254/553 (45%), Positives = 354/553 (64%), Gaps = 5/553 (0%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYAS 1794
            KWGS ++S  +   ++M    S S    EAS   AR   LS   E+G+   K S K++A 
Sbjct: 10   KWGSPMQSHSVTNSTSMFS--SFSARGMEASVNQARLSFLSVVSEEGDILNKHSFKSFAC 67

Query: 1793 SLGALQVVET--RSKELKTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFN 1620
            S  A  V     + + LK N DK    ++   +G+ ++ ++   S S   L+ +  S F+
Sbjct: 68   SSAAQNVENDCLQMERLKMNVDKTSHVSINNTMGNDKVSVEEEISTSHTRLRERMTSRFS 127

Query: 1619 LLYKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTK 1440
             L  N++ +E++  D D + LERDIL+QLG+LGAL+ F ACLSRTL     +D S   T+
Sbjct: 128  FLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNALDLSAVPTE 187

Query: 1439 HPKDFLIMGETDEQVGKILV-SSXXXXXXXXXXXKISDKAAKISALGSSSKT--NKLPRR 1269
            +  +    G  D+  GK +V +              SD   K ++L   SK+  N L + 
Sbjct: 188  NTGESKTDGMLDDLTGKTVVRTGKKEERKFRRGRAASDNGKKTTSLSLPSKSVQNNLQKP 247

Query: 1268 AIGSTVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAV 1089
                 V              RNEA+M+ GVK  +DLER++T LE E+GQV + S WAEA 
Sbjct: 248  TF---VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEAT 304

Query: 1088 GVDEKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAER 909
            G+D+KVLQQ+L +GW+CRD L+++THSL++Y+ARNYRG+GI+ EDL QAGN+G+L+GAER
Sbjct: 305  GLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAER 364

Query: 908  FDHERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYP 729
            FD  RGY+FSTYVQYWIRK M   +E+H+R I IP  LSR IN+I+KARK L + +GRYP
Sbjct: 365  FDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSDGRYP 424

Query: 728  DDEEIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRK 549
            DD E+A+F+ LSL KI  A+KC R+V S+D+KIG+   AK++EF PD SI++PEE VMR+
Sbjct: 425  DDWEVAKFTGLSLAKIESAKKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQ 484

Query: 548  HMQKDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKL 369
            HM++++Y+LL+GL  RE +V+ LRYGF D Q KSL EI R+F  SKE +RKIEK  + KL
Sbjct: 485  HMREEIYDLLRGLESRERQVMVLRYGFKDNQPKSLAEIGRLFHVSKERVRKIEKKIMIKL 544

Query: 368  RKEETERNLNQYL 330
            R E   RNL++Y+
Sbjct: 545  RDEGIRRNLSRYM 557


>gb|AKC88689.1| sigma factor [Hypseocharis bilobata]
          Length = 566

 Score =  454 bits (1168), Expect = e-124
 Identities = 252/534 (47%), Positives = 348/534 (65%), Gaps = 3/534 (0%)
 Frame = -1

Query: 1910 STSVGSGEASYESARAFILSATPEDGETHCKDSLKTYASSLGALQVVETRSKEL-KTNFD 1734
            S+SV + EAS+ + R F LS   E+GE   KD LK YASS  A Q +     E+ +   +
Sbjct: 33   SSSVHAREASFNTTRLFFLSIISEEGEKSHKDPLKAYASSYAAPQTLGNDFLEMGEMQSN 92

Query: 1733 KGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLLYKNVEKIEEIFLDEDFVTLE 1554
            K     ++  I D  M +    S S   L+V   +HF+LL +N++ +EE F D++ + LE
Sbjct: 93   KRSYGGLHSIIEDTLMHVGEGISSSGTSLRVSRPAHFSLLMENLDVLEETFADKNVLRLE 152

Query: 1553 RDILIQLGKLGALQLFQACLS-RTLLVPTTIDYSKQLTKHPKDFLIMGETDEQVGKILVS 1377
            RDIL+QLG+LGAL+LF   LS RT+      D S   T+  KD  +     E++ K +  
Sbjct: 153  RDILLQLGRLGALKLFNIFLSSRTIETSNIFDLSDVPTEDIKDCKVNSTKHERITKKIFH 212

Query: 1376 SXXXXXXXXXXXKISDKAAKISALGSSSKTNKLP-RRAIGSTVGNXXXXXXXXXXXXRNE 1200
            S           ++S+ + KIS+L   SKT +   ++   S+               RNE
Sbjct: 213  SGKKEKRKSRRARVSENSKKISSLLLPSKTIQSGFQQPSISSAKRASNSRSRILMIARNE 272

Query: 1199 AEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVDEKVLQQRLHYGWFCRDMLLR 1020
            AEM+ GVK++A+LER++T LE  +GQVA+ S WAEA G+D KVL+QRLH+GW+C+D LLR
Sbjct: 273  AEMARGVKEIAELERIRTTLEDGTGQVASISCWAEAAGLDPKVLRQRLHFGWYCQDELLR 332

Query: 1019 STHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHERGYQFSTYVQYWIRKEMSS 840
            ST SLI+YL R YRG+G++ EDL QAG +GVL+GAERFDH RG++FSTYVQ+WIRK MS 
Sbjct: 333  STRSLIIYLTRYYRGVGVAFEDLLQAGKMGVLQGAERFDHTRGFKFSTYVQFWIRKSMSM 392

Query: 839  FIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEEIARFSSLSLTKIRFARKCP 660
             + + SR + IP +LS+ INQI+KA+K L + +G+YPDD EIA+F+ LSL KI  A+KCP
Sbjct: 393  VVTRDSRNMQIPYSLSQAINQIQKAQKALMNSHGKYPDDTEIAKFTGLSLAKIASAKKCP 452

Query: 659  RIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQKDVYELLQGLLPRESEVLFL 480
            R VGS+DRK+GD L   + E  PD S+KSPEE +MR+HM+  +++LL+ L P+ES+VL L
Sbjct: 453  RFVGSLDRKVGDSLKGNYLEILPDKSMKSPEEALMRQHMRNYLHDLLKDLDPKESKVLVL 512

Query: 479  RYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEETERNLNQYLNFLL 318
            RYG  D   KSLEE  ++   SKEW+RK+E  AL KLR EET +NL  YL +++
Sbjct: 513  RYGLEDNLPKSLEETGKLCHVSKEWVRKLEMKALKKLRNEETLKNLRHYLAYIV 566


>ref|XP_009367413.1| PREDICTED: RNA polymerase sigma factor sigC-like [Pyrus x
            bretschneideri]
          Length = 556

 Score =  452 bits (1164), Expect = e-124
 Identities = 251/526 (47%), Positives = 337/526 (64%)
 Frame = -1

Query: 1907 TSVGSGEASYESARAFILSATPEDGETHCKDSLKTYASSLGALQVVETRSKELKTNFDKG 1728
            TSV   E S+ SAR   LS   E+GE   KD+LK Y+ S  + Q++E    E++      
Sbjct: 33   TSVRGREGSFNSARLLFLSIISEEGEISGKDTLKVYSCSSASPQILEDGVSEME---QIS 89

Query: 1727 LQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLLYKNVEKIEEIFLDEDFVTLERD 1548
             + +     G+ +MP+          L+    +HF LL KN++ +EE F + D + LE++
Sbjct: 90   FRSSSSNTTGNNQMPVADGNFRPVNTLESCSAAHFILLLKNLDALEETFANSDVLKLEKE 149

Query: 1547 ILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHPKDFLIMGETDEQVGKILVSSXX 1368
            IL+QLGKLGALQLF ACLSRTL   +  D S   T   +   +  + D   GKI+V S  
Sbjct: 150  ILLQLGKLGALQLFDACLSRTLTSSSFFDLSDIPTVQIEGHKMDKKVDNDRGKIIVRSGK 209

Query: 1367 XXXXXXXXXKISDKAAKISALGSSSKTNKLPRRAIGSTVGNXXXXXXXXXXXXRNEAEMS 1188
                      + +      +L   S T +  +    S+               +NEAEMS
Sbjct: 210  KKERRSRKRALDNVRVSSDSLPPKS-TWEGSKHPTASSAKRASKYRKSRLTIAKNEAEMS 268

Query: 1187 MGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVDEKVLQQRLHYGWFCRDMLLRSTHS 1008
             GVK +A+LER+K  LE E+G VAT S WAEA GV EKVL Q+LH+GW+C+D L+RST S
Sbjct: 269  TGVKVIANLERIKATLEKETGTVATLSCWAEAAGVREKVLLQKLHFGWYCQDELIRSTRS 328

Query: 1007 LIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHERGYQFSTYVQYWIRKEMSSFIEQ 828
            L++YLAR+YRGLG++ +DL QAGN G+L+GAER+DH RGY+FSTYV+YWI+K MS  + +
Sbjct: 329  LVLYLARSYRGLGVAMDDLLQAGNQGLLQGAERYDHSRGYRFSTYVRYWIKKSMSRLVAR 388

Query: 827  HSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEEIARFSSLSLTKIRFARKCPRIVG 648
            H+REI IP TLS+ INQI+KARK  Y+ + RYPDD+EIA+ + LSL +IR A  C R+VG
Sbjct: 389  HAREIQIPFTLSKAINQIQKARKATYNSHMRYPDDDEIAKITGLSLVRIRSASTCLRVVG 448

Query: 647  SVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQKDVYELLQGLLPRESEVLFLRYGF 468
            SV+ K+ D+    F E TPDTSIKSPEE V R+HM+KD+++LL+ L  +E +VL LRYG 
Sbjct: 449  SVNDKMWDNSPGTFMESTPDTSIKSPEETVTRQHMKKDIHDLLKCLNSKERQVLVLRYGL 508

Query: 467  WDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEETERNLNQYL 330
             +   KSLEEI ++F  SKEWIRKIEK ALTKLR +ET R+L+ YL
Sbjct: 509  NNYDPKSLEEIGKLFDVSKEWIRKIEKKALTKLRDDETHRSLSHYL 554


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  447 bits (1151), Expect = e-122
 Identities = 259/557 (46%), Positives = 345/557 (61%), Gaps = 9/557 (1%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYAS 1794
            KW S ++S F    S  L   STSV   E S+ SAR   LS   ED  ++ +D +K Y  
Sbjct: 10   KWVSPVQSHFFTTSSCRLS--STSVRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTC 67

Query: 1793 SLGALQVVETRSKELKTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLL 1614
            S    Q VE                  Y +  +IR       S SC G     +S F LL
Sbjct: 68   SFVNTQTVEND----------------YSETEEIRQK-----STSCIGQDASSRSDFRLL 106

Query: 1613 YKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHP 1434
             +N++ +E  F D D + LER+IL QLGKLGAL+LF + LSR +     +D S   T+  
Sbjct: 107  MENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQ 166

Query: 1433 KDFLIMGETDEQVGKILVSSXXXXXXXXXXXKISDKAAKISAL---------GSSSKTNK 1281
            K   +    D  +GKILV S           ++S+++ + S L         G    T  
Sbjct: 167  K---MNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIF 223

Query: 1280 LPRRAIGSTVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRW 1101
             P RA+ S                RNEAEMS GV+ VA+LER+KT LE ESG+ A+ + W
Sbjct: 224  SPERALNSR--------GRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCW 275

Query: 1100 AEAVGVDEKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLK 921
            A+A GV E+VL+Q L +GW+CR+ L++ST  L+++LARNYRGLGI   DL QAGNVGVL+
Sbjct: 276  AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335

Query: 920  GAERFDHERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLN 741
            GAERFDH RGY+FSTYVQYWIRK +S  + +H+R I IP  L+R I++I+KARK L + +
Sbjct: 336  GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395

Query: 740  GRYPDDEEIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEI 561
            G+YP+D EIA+++ LSL +IR A +C RIVGS+D+KIGD L+AK+ EF PD S+KSP+EI
Sbjct: 396  GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEI 455

Query: 560  VMRKHMQKDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSA 381
            VMR+HM+KDV+ +L+ L  RE +VL LRYG  D + KSLEEI ++F  SKEWIRK+EK A
Sbjct: 456  VMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKA 515

Query: 380  LTKLRKEETERNLNQYL 330
            +TKLR  ET R+L+ +L
Sbjct: 516  MTKLRDSETCRDLSHFL 532


>ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC [Phoenix dactylifera]
          Length = 567

 Score =  446 bits (1148), Expect = e-122
 Identities = 249/562 (44%), Positives = 349/562 (62%), Gaps = 13/562 (2%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGSG-----EASYESARAFILSATPEDGETHCKDSL 1809
            +W   I+SP        L  H     S      EA  E  +  +     E  E   +D+ 
Sbjct: 11   RWAFPIQSPLPTNPCARLLDHQHHPPSSFFRVREAFSEPGKVSLQHLFTERVELLHRDTS 70

Query: 1808 KTYASSLGALQVVETRSKEL-KTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQ---GLQV 1641
            K    S  A Q +E  S +  + N D+ L R  +    D+  PI +  + S      L  
Sbjct: 71   KACVCSFEAPQSIENMSADANEVNMDRKLLRGAH----DLNRPINMMENDSSAYHARLTA 126

Query: 1640 KEKSHFNLLYKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTID 1461
                 +NLL +N+++IE++F   D V ++RDIL+ + +LGAL+LF ACLSRT + PT  +
Sbjct: 127  SSSLQYNLLMENLDRIEDVFAGTDLVRMQRDILVHIRRLGALKLFHACLSRTHITPTADN 186

Query: 1460 YSKQLTKHPKDFLIMGETDEQVGKILVSSXXXXXXXXXXXKISDKAAKISALGSSSKTN- 1284
             +   ++H     +     EQ   I+V S           +  ++A+++SAL  SSK N 
Sbjct: 187  SNFLHSEHSGGCSLEFPLVEQKHNIIVRSGKKKERKLRRRRALERASEVSALLGSSKKNC 246

Query: 1283 ---KLPRRAIGSTVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVAT 1113
                LP   +G  + N            RNE+EMS GVK+VA+LER    LE + GQ A+
Sbjct: 247  TTFSLPT-GLGK-LNNSSESRKRRVLIARNESEMSRGVKEVANLERTYIKLEEKIGQPAS 304

Query: 1112 FSRWAEAVGVDEKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNV 933
            ++RWAEA G+D+K L QRL +GW+CRD L++ST SL++YLAR YRG+GI+ +DL QAGN+
Sbjct: 305  YARWAEAAGIDQKTLHQRLQFGWYCRDELIKSTRSLVIYLARKYRGMGIAFDDLLQAGNL 364

Query: 932  GVLKGAERFDHERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTL 753
            GVL GAERFD++RGY+FSTYVQYWIRK M + I +HS+ I IPV + + I QI++AR+  
Sbjct: 365  GVLNGAERFDNKRGYKFSTYVQYWIRKSMLAVIARHSKGIQIPVRMEKIIKQIQEARRDF 424

Query: 752  YSLNGRYPDDEEIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKS 573
             S  GRYP DEE A F+ LSL K+R ARKC R +GS++++IGD    KF E TPDTS+K+
Sbjct: 425  SSREGRYPRDEETAEFTGLSLDKVRLARKCSRTIGSIEQEIGDGWCTKFMEITPDTSLKA 484

Query: 572  PEEIVMRKHMQKDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKI 393
            P EIV+R+HM++D++E+L+GL PRE +VL LRYG  DG+CKSLEEI R+F  +KEWIRK+
Sbjct: 485  PSEIVVRQHMREDIFEVLKGLHPREMQVLVLRYGLDDGRCKSLEEIGRLFHVTKEWIRKL 544

Query: 392  EKSALTKLRKEETERNLNQYLN 327
            EK+AL+K+R+EE +R L  YL+
Sbjct: 545  EKAALSKIRREEIQRELKHYLH 566


>gb|KDO79960.1| hypothetical protein CISIN_1g009449mg [Citrus sinensis]
          Length = 534

 Score =  445 bits (1144), Expect = e-122
 Identities = 257/550 (46%), Positives = 345/550 (62%), Gaps = 2/550 (0%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYAS 1794
            KW S ++S F    S  L   STSV   E S+ SAR   LS   ED  ++ +D +K Y  
Sbjct: 10   KWVSPVQSHFFTTSSCRLS--STSVRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTC 67

Query: 1793 SLGALQVVETRSKELKTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLL 1614
            S    Q VE                  Y +  +IR       S SC G     +S F LL
Sbjct: 68   SFVNTQTVEND----------------YSETEEIRQK-----STSCIGQDASSRSDFRLL 106

Query: 1613 YKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHP 1434
             +N++ +E  F D D + LER+IL QLGKLGAL+LF + LSR +     +D S   T+  
Sbjct: 107  MENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQ 166

Query: 1433 KDFLIMGETDEQVGKILVSSXXXXXXXXXXXKISDKAAKISALGSSSKTNK--LPRRAIG 1260
            K   +    D  +GKILV S           ++S+++ + S L   S+  +  L +  I 
Sbjct: 167  K---MNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIF 223

Query: 1259 STVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVD 1080
            S                RNEAEMS GV+ VA+LER+KT LE ESG+ A+ + WA+A GV 
Sbjct: 224  SAE-RALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282

Query: 1079 EKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDH 900
            E+VL+Q L +GW+CR+ L++ST  L+++LARNYRGLGI   DL QAGNVGVL+GAERFDH
Sbjct: 283  ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342

Query: 899  ERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDE 720
             RGY+FSTYVQYWIRK +S  + +H+R I IP  L+R I++I+KARK L + +G+YP+D 
Sbjct: 343  TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402

Query: 719  EIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQ 540
            EIA+++ LSL +IR A +C RIVGS+D+KIGD L+AK+ EF PD S+KSP+EIVMR+HM+
Sbjct: 403  EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462

Query: 539  KDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKE 360
            KDV+ +L+ L  RE +VL LRYG  D + KSLEEI ++F  SKEWIRK+EK A+TKLR  
Sbjct: 463  KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522

Query: 359  ETERNLNQYL 330
            ET R+L+ +L
Sbjct: 523  ETCRDLSHFL 532


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  442 bits (1138), Expect = e-121
 Identities = 256/550 (46%), Positives = 344/550 (62%), Gaps = 2/550 (0%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYAS 1794
            KW S ++S F    S  L   STSV   E S+ SAR   LS   ED  ++ +D +K Y  
Sbjct: 10   KWVSPVQSHFFTTSSCRLS--STSVRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTC 67

Query: 1793 SLGALQVVETRSKELKTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLL 1614
            S    Q VE                  Y +  +IR       S SC G     +S F LL
Sbjct: 68   SFVNTQTVEND----------------YSETEEIRQK-----STSCIGQDASSRSDFRLL 106

Query: 1613 YKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHP 1434
             +N++ +E  F D D + LER+IL QLGKLGAL+LF + LSR +     +D S   T+  
Sbjct: 107  MENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQ 166

Query: 1433 KDFLIMGETDEQVGKILVSSXXXXXXXXXXXKISDKAAK--ISALGSSSKTNKLPRRAIG 1260
            K   +    D  +GKILV S           ++S+++ +  + +L S +    L +  I 
Sbjct: 167  K---MDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSEALQEGLKQPTIF 223

Query: 1259 STVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVD 1080
            S                RNEAEMS GV+ VA+LER+KT LE ESG+ A  + WA+A GV 
Sbjct: 224  SAE-RALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVS 282

Query: 1079 EKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDH 900
            E+VL+Q L +GW+CR+ L++ST  L+++LARNYRGLGI   DL QAGNVGVL+GAERFDH
Sbjct: 283  ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342

Query: 899  ERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDE 720
             RGY+FSTYVQYWIRK +S  + +H+R I IP  L+R I++I+KARK L + +G+YP+D 
Sbjct: 343  TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402

Query: 719  EIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQ 540
            EIA+++ LSL +IR A +C RIVGS+D+KIGD L+AK+ EF PD S+KSP+EIVMR+HM+
Sbjct: 403  EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462

Query: 539  KDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKE 360
            KDV+ +L+ L  RE +VL LRYG  D + KSLEEI ++F  SKEWIRK+EK A+TKLR  
Sbjct: 463  KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522

Query: 359  ETERNLNQYL 330
            ET R+L+ +L
Sbjct: 523  ETCRDLSHFL 532


>ref|XP_010909938.1| PREDICTED: RNA polymerase sigma factor sigC [Elaeis guineensis]
          Length = 563

 Score =  441 bits (1135), Expect = e-121
 Identities = 250/558 (44%), Positives = 349/558 (62%), Gaps = 10/558 (1%)
 Frame = -1

Query: 1973 KWGSQIRSPFLAGQSTMLKQHSTSVGS----GEASYESARAFILSATPEDGETHCKDSLK 1806
            +W   I+SP        L  H     S     E S+E  +        E  E   +D+LK
Sbjct: 11   RWAFPIQSPLATNPCARLLDHHHPPPSFFRVREVSFELGKVSSQRLFTERVELLHRDTLK 70

Query: 1805 TYASSLGALQVVETRSKEL-KTNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKS 1629
             Y  S  A Q +E  S +  K N DK L +    +   I M  +  +S + + L+     
Sbjct: 71   AYVCSFEAPQSIENMSADACKVNIDKKLLK----ENRPINMIEEDSSSYNAR-LKASSSL 125

Query: 1628 HFNLLYKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQ 1449
             ++LL +N+E+IE++F   D V L+RDIL+ + +LGAL+LF ACLSRTL+ PT  + +  
Sbjct: 126  QYSLLMENLERIEDVFAGTDLVRLQRDILVHIRRLGALKLFHACLSRTLMAPTADNSNSL 185

Query: 1448 LTKHPKDFLIMGETDEQVGKILVSSXXXXXXXXXXXKIS-DKAAKISALGSSSKTN---- 1284
             +KH     +     EQ   I+V S           + + ++A+++SAL  SSK N    
Sbjct: 186  HSKHSGGCSLEFPLGEQKHNIIVHSGKKKERKLRRRRRALERASEMSALSDSSKKNCKMF 245

Query: 1283 KLPRRAIGSTVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSR 1104
             LP   +G  + N            RNE+EMS GVK+VA+LER +  LE E GQ A+++R
Sbjct: 246  SLPT-GLGK-LNNSSESRKRRVLIARNESEMSRGVKEVANLERTRIKLEEEIGQPASYAR 303

Query: 1103 WAEAVGVDEKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVL 924
            WAEA G+D+K L QRL +GW+CRD L++ST SL++++AR YRG+GI+ +DL QAGNVGVL
Sbjct: 304  WAEAAGIDQKTLYQRLQFGWYCRDKLIKSTRSLVMFVARKYRGMGIAFDDLLQAGNVGVL 363

Query: 923  KGAERFDHERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSL 744
             GAERFD++RGY+FSTYVQYWIRK M + I +HS+ I IPV + + I +I++AR+ L + 
Sbjct: 364  NGAERFDNKRGYKFSTYVQYWIRKSMLAVIARHSKGIQIPVRMEKVIKRIQEARRDLSNR 423

Query: 743  NGRYPDDEEIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEE 564
             GRYP DEE A F+ LSL K+R A KC R VGS+++ IGD    K  E TPDTS+K+P E
Sbjct: 424  EGRYPRDEETAEFTGLSLDKVRLANKCSRTVGSIEQGIGDGWCTKIMEITPDTSLKAPSE 483

Query: 563  IVMRKHMQKDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKS 384
            IVM +HM++D++E+L+ L PRE +VL LRYG  DG+CKSLE+I R+F  +KEWIRKIEK+
Sbjct: 484  IVMGQHMREDIFEVLKPLHPRERQVLVLRYGLDDGRCKSLEDIGRLFHVTKEWIRKIEKA 543

Query: 383  ALTKLRKEETERNLNQYL 330
            A +K+R+EE +R L  YL
Sbjct: 544  AFSKIRREEIQRELKHYL 561


>ref|XP_009361495.1| PREDICTED: RNA polymerase sigma factor sigC-like isoform X1 [Pyrus x
            bretschneideri]
          Length = 558

 Score =  441 bits (1135), Expect = e-121
 Identities = 252/536 (47%), Positives = 340/536 (63%), Gaps = 1/536 (0%)
 Frame = -1

Query: 1931 STMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYASSLGALQVVETRSKE 1752
            S+  K  S SV   E S+ SAR   LS   E+GET  KD+LK Y+ S  + Q++E    +
Sbjct: 25   SSNSKLSSASVRGREGSFNSARLSFLSIISEEGETSGKDTLKIYSCSSASPQILEDGFSD 84

Query: 1751 LKT-NFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLLYKNVEKIEEIFLD 1575
            L+   F +  + +    IG+ +MP   +  IS +G+     +HF+LL KN++ +EE F +
Sbjct: 85   LEEIRFRRVPKSSSSNTIGNNQMPDGDF--ISSKGIDACSAAHFSLLLKNLDALEETFAN 142

Query: 1574 EDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHPKDFLIMGETDEQV 1395
             D + LE +IL+QLG+LGALQLF A LSRTL   +    S   T   ++  +  + D   
Sbjct: 143  SDVLKLENEILLQLGRLGALQLFDAYLSRTLTSSSFFYLSDIPTVPIEEDKMDKKVDNYR 202

Query: 1394 GKILVSSXXXXXXXXXXXKISDKAAKISALGSSSKTNKLPRRAIGSTVGNXXXXXXXXXX 1215
            GK +V S             SD A   S L     T +  +    S+             
Sbjct: 203  GKTIVRSGKKEERRSRKRA-SDNARVSSELLPPKTTCEGFKPPTVSSAKRASNSRRRRLT 261

Query: 1214 XXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVDEKVLQQRLHYGWFCR 1035
               NE E+S GVK +A+LER+K  LE E+G VAT S WAEA GVDEKVL Q+LH+GW C+
Sbjct: 262  IVLNEPELSTGVKVIANLERVKATLEKETGTVATLSCWAEAAGVDEKVLLQKLHFGWHCQ 321

Query: 1034 DMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHERGYQFSTYVQYWIR 855
            D L+RST SL++YLAR+YRGLG++ +DL QAGN+G+L+GAER+DH RGY+FSTYV+YWI+
Sbjct: 322  DELIRSTRSLVLYLARSYRGLGVAMDDLLQAGNLGLLQGAERYDHSRGYRFSTYVRYWIK 381

Query: 854  KEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEEIARFSSLSLTKIRF 675
            K MS  + +H+R I IP  LS+ INQI+KARK  Y+   +YP+D+EIA+ + LSL +IR 
Sbjct: 382  KSMSRLVARHARGIQIPFMLSKAINQIQKARKATYNSQMKYPNDDEIAKITGLSLVRIRS 441

Query: 674  ARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQKDVYELLQGLLPRES 495
            A  C R+VGS+D K+ D  +  F EFT D SIKSPEE VMR+HM+ D+++LL+ L  +E 
Sbjct: 442  ASTCLRVVGSIDDKMWDSSAGTFMEFTADKSIKSPEETVMRQHMKNDIHDLLKCLNSKER 501

Query: 494  EVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEETERNLNQYLN 327
            +VL LRYG  +   KSLEEI ++F  SKEWIRKIEK ALTKLR  ET R+L+ YLN
Sbjct: 502  QVLVLRYGLNNYDPKSLEEIGKLFDVSKEWIRKIEKKALTKLRDNETHRSLSHYLN 557


>ref|XP_012857954.1| PREDICTED: RNA polymerase sigma factor sigC [Erythranthe guttatus]
          Length = 562

 Score =  441 bits (1134), Expect = e-120
 Identities = 251/552 (45%), Positives = 347/552 (62%), Gaps = 5/552 (0%)
 Frame = -1

Query: 1967 GSQIRSPFLAGQSTMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDS--LKTYAS 1794
            G  ++SP     ST     S+S    ++SY  AR+   S    D ET    S  +  Y S
Sbjct: 11   GLSVQSPL--STSTSSWPTSSSCRGRDSSYFLARSSAASVIYGDTETLNDTSRGIHVYPS 68

Query: 1793 SLGALQVVETR-SKELKTNFDKGLQRAMYYQI-GDIRMPIQVYTSISCQGLQVKEKSHFN 1620
            S   L+      +K+LK    KG   ++Y  +  DI++P       +   +Q  + S   
Sbjct: 69   SHQLLENYYLGGAKQLKVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLR 128

Query: 1619 LLYKNVEKIEEIFLDEDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTK 1440
            LL KN++ +E++F D + V LE DIL QL +LGAL+LF +CLSRT+   T+ D S   T+
Sbjct: 129  LLMKNLDVLEDMFADSNAVRLEGDILEQLERLGALRLFHSCLSRTIKSYTSFDLSDGPTE 188

Query: 1439 HPKDFLIMGET-DEQVGKILVSSXXXXXXXXXXXKISDKAAKISALGSSSKTNKLPRRAI 1263
              ++   + ++ D  +GK+ V S           + SD  +       S   +K  ++  
Sbjct: 189  IVEECARVNDSVDNHLGKVFVHSGKKELRKLRRKRTSDNESPTIQESPSKTISKDLQQLK 248

Query: 1262 GSTVGNXXXXXXXXXXXXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGV 1083
             +  G             RNEA+MS GVK VA+LE+++T LE E+GQ+A+ S WAEA G+
Sbjct: 249  FAIAGRTPRSRNKRQKTARNEADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGI 308

Query: 1082 DEKVLQQRLHYGWFCRDMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFD 903
             +K LQQ LHYGW CRD LLRSTHSL++++ARNY GLG++ EDL QAGN+GVL+GAERFD
Sbjct: 309  KKKELQQHLHYGWHCRDELLRSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFD 368

Query: 902  HERGYQFSTYVQYWIRKEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDD 723
              RGY+FSTYVQYWIRK MS+ + +H+R + IP TLS+ INQ+ KARK L + NG+YPDD
Sbjct: 369  QSRGYKFSTYVQYWIRKSMSTLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDD 428

Query: 722  EEIARFSSLSLTKIRFARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHM 543
             EIA+F+ LS+ K+  A KC R+VGS+D+KIG+ ++ K+ E   DTS+ SPEE V+R+HM
Sbjct: 429  YEIAKFTGLSVAKVMSASKCLRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHM 488

Query: 542  QKDVYELLQGLLPRESEVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRK 363
              DV  LL GL PRE +V+ LR+G  + QCKSLEEI R+FR SKEWIRKIE+SAL KLR 
Sbjct: 489  LNDVSTLLNGLEPREKQVIILRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRN 548

Query: 362  EETERNLNQYLN 327
            E++ + LN Y++
Sbjct: 549  EDSLKILNHYVH 560


>ref|XP_008365120.1| PREDICTED: RNA polymerase sigma factor sigC-like [Malus domestica]
          Length = 559

 Score =  441 bits (1134), Expect = e-120
 Identities = 252/529 (47%), Positives = 340/529 (64%), Gaps = 1/529 (0%)
 Frame = -1

Query: 1910 STSVGSGEASYESARAFILSATPEDGETHCKDSLKTYASSLGALQVVETRSKELKT-NFD 1734
            S SV   E S+ SAR   LS   E+GET  KD+LK Y+ S  + Q++E     L+   F 
Sbjct: 32   SASVRGREGSFNSARLSFLSIISEEGETSGKDTLKIYSCSSASPQILEDGFSNLEEIRFR 91

Query: 1733 KGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLLYKNVEKIEEIFLDEDFVTLE 1554
            +  + +     G+ +MP   + S   +GL+    +HF+LL KN++ +EE F + D + LE
Sbjct: 92   RVPKSSSSNTTGNNQMPDGDFRS--SKGLEACSAAHFSLLLKNLDALEETFANSDVLKLE 149

Query: 1553 RDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHPKDFLIMGETDEQVGKILVSS 1374
             +IL QLG+LGALQLF A LSRTL   +  D S   T   +++ +  + D   GK +V S
Sbjct: 150  NEILSQLGRLGALQLFNAYLSRTLTSSSFXDLSDIPTVPIEEYKMDKKVDNDRGKTIVWS 209

Query: 1373 XXXXXXXXXXXKISDKAAKISALGSSSKTNKLPRRAIGSTVGNXXXXXXXXXXXXRNEAE 1194
                         SD A   S L S   T +  +    S+                NEAE
Sbjct: 210  GKKEERRSRKRA-SDNARVSSELLSPKTTWEGFKPPTVSSAKRASXSRRRRXTIVLNEAE 268

Query: 1193 MSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVDEKVLQQRLHYGWFCRDMLLRST 1014
            +S GVK +A LER+K  LE E+G VAT S WAEA GV +KVL Q+LH+GW+C+D L+RST
Sbjct: 269  LSTGVKVIAKLERVKATLEKETGTVATLSCWAEAAGVHKKVLLQKLHFGWYCQDELIRST 328

Query: 1013 HSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHERGYQFSTYVQYWIRKEMSSFI 834
             SL++YLAR+YRGLG++ +DL QAGN+G+L+GAER+D  RGY+FSTYV+YWI+K MS  +
Sbjct: 329  RSLVLYLARSYRGLGVAMDDLLQAGNLGLLQGAERYDPSRGYRFSTYVRYWIKKSMSRLV 388

Query: 833  EQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEEIARFSSLSLTKIRFARKCPRI 654
             +H+R I IP TLS+ INQI+KARK  Y+   +YPDD+EIA+ + LSL +I+ A  C R+
Sbjct: 389  ARHARGIQIPFTLSKAINQIQKARKATYNSQMKYPDDDEIAKITGLSLARIKSASTCLRV 448

Query: 653  VGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQKDVYELLQGLLPRESEVLFLRY 474
            VGS+D K+ D  +  F EFT D SIKSPEE V R+HM+KD+++LL+ L  +E +VL LRY
Sbjct: 449  VGSIDEKMWDSSAGTFMEFTADKSIKSPEETVTRQHMKKDIHDLLKCLNSKERQVLVLRY 508

Query: 473  GFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEETERNLNQYLN 327
            G  +   KSLEEI ++F  SKEWIRKIEK ALTKLR +ET R+L+ YLN
Sbjct: 509  GLNNYDPKSLEEIGKLFDVSKEWIRKIEKKALTKLRDDETHRSLSHYLN 557


>ref|XP_009370149.1| PREDICTED: RNA polymerase sigma factor sigC-like isoform X1 [Pyrus x
            bretschneideri]
          Length = 558

 Score =  440 bits (1131), Expect = e-120
 Identities = 252/536 (47%), Positives = 340/536 (63%), Gaps = 1/536 (0%)
 Frame = -1

Query: 1931 STMLKQHSTSVGSGEASYESARAFILSATPEDGETHCKDSLKTYASSLGALQVVETRSKE 1752
            S+  K  S SV   E S+ SAR   LS   E+GET  KD+LK Y+ S  +  ++E    +
Sbjct: 25   SSNSKLSSASVRGREGSFNSARLSFLSIISEEGETSGKDTLKIYSCSSASPLILEDGFSD 84

Query: 1751 LKT-NFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLLYKNVEKIEEIFLD 1575
            L+   F +  + +    IG+ +MP   + S   +GL+    +HF+LL KN++ +EE F +
Sbjct: 85   LEEIRFRRVPKSSSSNTIGNNQMPDSDFRS--SKGLEACSAAHFSLLLKNLDALEETFAN 142

Query: 1574 EDFVTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHPKDFLIMGETDEQV 1395
             D + LE +IL+QLG+LGALQLF A LSRTL   +    S   T   ++  +  + D   
Sbjct: 143  SDVLKLENEILLQLGRLGALQLFDAYLSRTLTSSSFFYLSDIPTVPIEEDKMDKKVDNDR 202

Query: 1394 GKILVSSXXXXXXXXXXXKISDKAAKISALGSSSKTNKLPRRAIGSTVGNXXXXXXXXXX 1215
            GK +V S             SD A   S L     T +  +    S+             
Sbjct: 203  GKTIVRSGKKEERRSRKRA-SDNARVSSELLPPKTTWEGFKPPTVSSAKRASNSRRRRLT 261

Query: 1214 XXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVDEKVLQQRLHYGWFCR 1035
               NEAE+S GVK +A+LER+K  LE E+G VAT S WAEA GV EKVL Q+LH+GW+C+
Sbjct: 262  IVLNEAELSTGVKVIANLERVKATLEKETGTVATLSCWAEAAGVHEKVLLQKLHFGWYCQ 321

Query: 1034 DMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHERGYQFSTYVQYWIR 855
            D L+RST SL++YLAR+YRGLG++ +DL QAGN+G+L+GAER+DH RGY+FSTYV+YWI+
Sbjct: 322  DELIRSTRSLVLYLARSYRGLGVAMDDLLQAGNLGLLQGAERYDHSRGYRFSTYVRYWIK 381

Query: 854  KEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEEIARFSSLSLTKIRF 675
            K MS  + +H+R I IP  LS+ INQI+KARK  Y+   +YP+D+EIA+ + LSL +IR 
Sbjct: 382  KSMSRLVARHARGIQIPFMLSKAINQIQKARKATYNSQMKYPNDDEIAKITGLSLVRIRS 441

Query: 674  ARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQKDVYELLQGLLPRES 495
            A  C R+VGS+D K+ D  +  F EFT D SIKSPEE VMR+HM+KD++ LL+ L  +E 
Sbjct: 442  ASTCLRVVGSIDDKMWDSSAGTFMEFTADKSIKSPEESVMRQHMKKDIHGLLKCLNSKER 501

Query: 494  EVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEETERNLNQYLN 327
            +VL LRYG  +   KSLEEI ++F  SKEWIRKIEK ALTKLR  ET R+L+ YLN
Sbjct: 502  QVLVLRYGLNNYDPKSLEEIGKLFDVSKEWIRKIEKKALTKLRDNETHRSLSHYLN 557


>ref|XP_006853783.2| PREDICTED: RNA polymerase sigma factor sigC [Amborella trichopoda]
          Length = 564

 Score =  438 bits (1127), Expect = e-120
 Identities = 240/536 (44%), Positives = 342/536 (63%), Gaps = 7/536 (1%)
 Frame = -1

Query: 1913 HSTS-VGSGEASYESARAFILSATPEDGETHCKDSLKTYASSLGALQVVETR---SKELK 1746
            H+TS + S + S ESA+A  LS  PE+ E    D  K +    G +Q   +    ++E+K
Sbjct: 37   HNTSPLKSKQPSIESAKASTLSVIPEETERLLGDCTKDFPYFFGDIQNANSSHDITEEMK 96

Query: 1745 TNFDKGLQRAMYYQIGDIRMPIQVYTSISCQGLQVKEKSHFNLLYKNVEKIEEIFLDEDF 1566
             N +K    A  Y I    +PI   T  +  GL      HF+ L++N+EKIE I +D   
Sbjct: 97   MNINKNKPDASLYVIDKAELPIAEDTFSNVAGLP-----HFSFLFENLEKIEGIIVDSGN 151

Query: 1565 VTLERDILIQLGKLGALQLFQACLSRTLLVPTTIDYSKQLTKHPKDFLIMGETDEQVGKI 1386
              LER+IL+ + +LGAL+LF A LSRTL  P  +D +    +H     ++   DEQ    
Sbjct: 152  ARLEREILLHIERLGALKLFHAFLSRTLKDPKILDVTGTCPEHA----MVQPMDEQADGY 207

Query: 1385 LVSSXXXXXXXXXXXKISDKAAKISALGSSSKTNKLPRRAIGSTV---GNXXXXXXXXXX 1215
            +VSS           +   K      + SS K  K   ++I + +   G+          
Sbjct: 208  IVSSGKKVERKAQRERALKKVTDEPIVCSSLKRVKKSTKSINAALTHKGHPGNSKSRSHL 267

Query: 1214 XXRNEAEMSMGVKDVADLERMKTMLEVESGQVATFSRWAEAVGVDEKVLQQRLHYGWFCR 1035
              ++E EMS GV++VA LE+++  LE   G+ A+FS WAEA G++EKVL+Q+LH+GWFCR
Sbjct: 268  RAQSEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQLHFGWFCR 327

Query: 1034 DMLLRSTHSLIVYLARNYRGLGISSEDLYQAGNVGVLKGAERFDHERGYQFSTYVQYWIR 855
            D LLRST  L++YLA++YRG GI  EDL QAG++GVL+GAERFDH RGY+FSTYVQYWIR
Sbjct: 328  DKLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQGAERFDHTRGYRFSTYVQYWIR 387

Query: 854  KEMSSFIEQHSREIHIPVTLSRRINQIKKARKTLYSLNGRYPDDEEIARFSSLSLTKIRF 675
            K +S+ + +HSR + IP+ L++ +NQ  KA++ L+ ++GR+P + EIA F+ LSL  +R 
Sbjct: 388  KSLSALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGLSLVNVRL 447

Query: 674  ARKCPRIVGSVDRKIGDDLSAKFTEFTPDTSIKSPEEIVMRKHMQKDVYELLQGLLPRES 495
            A KC R+ GS+D++IGD+  A + E T DT I++PE++VM++HM++ ++E+L  L PRE 
Sbjct: 448  ANKCLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREK 507

Query: 494  EVLFLRYGFWDGQCKSLEEIARIFRCSKEWIRKIEKSALTKLRKEETERNLNQYLN 327
            +VL LRYG WDG+CKSLEEI R++  +KEWIRKIEK AL K+RKEE + NLN +LN
Sbjct: 508  QVLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNFFLN 563