BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00010727
         (2335 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABI34306.1| Polyprotein, putative [Solanum demissum]               810   0.0  
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         669   0.0  
gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subc...   660   0.0  
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]     662   0.0  
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   663   0.0  
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     662   0.0  
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         662   0.0  
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc...   661   0.0  
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc...   661   0.0  
gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group...   661   0.0  
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...   661   0.0  
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         660   0.0  
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ...   660   0.0  
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   660   0.0  
gb|AAT58810.1| putative polyprotein [Oryza sativa Japonica Group]     660   0.0  
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   660   0.0  
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   660   0.0  
gb|AAT38001.1| Putative polyprotein [Oryza sativa Japonica Group]     660   0.0  
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...   659   0.0  
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]     658   0.0  

>gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
          Length = 1691

 Score =  810 bits (2093), Expect(2) = 0.0
 Identities = 389/610 (63%), Positives = 481/610 (78%), Gaps = 6/610 (0%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNIDMNKIASS-YIVCTFSIW 1636
            S FLLNKAGF Q I SNQY I K  IFVGKGYA DGMFKLN++MNK ++S Y++ + + W
Sbjct: 382  SSFLLNKAGFKQIIESNQYVIVKKGIFVGKGYACDGMFKLNVEMNKTSTSVYMLSSTNFW 441

Query: 1635 HARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVVRESEPLDLIHS 1456
            HARLCH++ + V  MSSLG IP M  K+FEKCE+CS+AKITK PH  V R+++ L+L+H+
Sbjct: 442  HARLCHINDRYVGIMSSLGLIP-MIKKNFEKCEACSKAKITKRPHFQVERKTDLLELVHT 500

Query: 1455 DICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQFNRKIKR 1276
            DICE  G LTR G RYFITFIDD S +TYVYLM++K++A + FK ++ EVENQF RKIKR
Sbjct: 501  DICELGGILTRGGNRYFITFIDDFSKFTYVYLMKNKSDAFENFKTYLHEVENQFGRKIKR 560

Query: 1275 MRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIMLYSGAA 1096
            +RSDRG EY+SNEFN   +S GIIHETT PYSP  NG AERKNRTL EL  A+++ S A 
Sbjct: 561  IRSDRGREYESNEFNSFVRSLGIIHETTPPYSPSSNGVAERKNRTLVELTNAMLIESHAP 620

Query: 1095 PYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSDPKRSKL 916
              +WGE + T CYVLNR+P  K   +PFE+W+  KP++ YL++WGCLA+VR  DPK +KL
Sbjct: 621  LNFWGEAILTACYVLNRVPHKKSKLTPFELWKGYKPSLGYLRVWGCLAFVRLMDPKITKL 680

Query: 915  ASRAYKCVFIGYSNTSKAYRFYNLEDKVIIESVDADFFEDKFPFKSKDSGGSHTSSG--- 745
              +   C F+GY++ S AYRF+NLED ++IES DA F E+KFPF SK+SGG         
Sbjct: 681  GKKVTTCAFLGYASNSTAYRFFNLEDNIVIESGDAIFHENKFPFDSKNSGGQRIEQNILT 740

Query: 744  --GNDVREPRNEDIDDAEPRRSKRARIAKDYGPDFEIFTLNDDPSTLRDALSSPDADLWQ 571
               +     +N++++D E RRSKRAR+ KD+GPDF +F + DD  TL++ALSS D+  W+
Sbjct: 741  LPSSSTSTLKNKEVNDFELRRSKRARVEKDFGPDFYVFNVGDDRLTLKEALSSHDSIFWK 800

Query: 570  EAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPDGTVEKYKARLVAKGYRQKE 391
            EA+NDEM+SL SNKTW LVDLPPGCKTIGCKWVL++KL+PDG+++KYKARLVAKG++Q E
Sbjct: 801  EAVNDEMESLISNKTWKLVDLPPGCKTIGCKWVLRKKLKPDGSIDKYKARLVAKGFKQLE 860

Query: 390  NIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFLNGDLEEEIYMDQPETFIVP 211
             ++FFDT+SPVTRITSIR+LIA+AAI +L IHQMDVKTAFLNGDL EEIYMDQPE+F+  
Sbjct: 861  GLEFFDTFSPVTRITSIRLLIAMAAIFDLQIHQMDVKTAFLNGDLNEEIYMDQPESFVEA 920

Query: 210  GQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINESDKCIYYKSENNTCVIICLY 31
            GQE KVCKL KSLYGLKQAPKQWH+KFD  +I NGF+ NE DKCIY+KS NN+ VIICLY
Sbjct: 921  GQESKVCKLTKSLYGLKQAPKQWHEKFDSCMIENGFKTNECDKCIYHKSWNNSHVIICLY 980

Query: 30   VDDLLIFGSN 1
            VDDLLIFGSN
Sbjct: 981  VDDLLIFGSN 990



 Score =  166 bits (420), Expect(2) = 0.0
 Identities = 84/170 (49%), Positives = 113/170 (66%), Gaps = 2/170 (1%)
 Frame = -3

Query: 2303 KNKNQAALKPKPKNMKSNQNRKNGKAGHNKNYNQHPSRNGQNRDSVQVICYSCNKPGHLA 2124
            ++    +LKPK K  K N    NG+     N     ++N Q +D     C+ C K GH+A
Sbjct: 220  ESHKNTSLKPKKKKFKKN----NGRPPKKNNGENIQAQNQQVQDKGP--CFVCGKSGHIA 273

Query: 2123 RNCRSKNKGA-PQAHVTEEPLVAMISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEI 1947
            R CR + +G  PQA+VTEEP VA+I+++N++   +GWW D+GA+RHVCYD+  FK YT  
Sbjct: 274  RFCRFRKRGPNPQANVTEEPFVAVITDINMVENVDGWWADSGANRHVCYDKDWFKKYTHF 333

Query: 1946 GD-KKVLLGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFS 1800
             + K ++LGDSHTT VLGTG+VEL FTSGR + LKDVL+TP MRK L+ S
Sbjct: 334  EEPKTIMLGDSHTTQVLGTGDVELCFTSGRVLTLKDVLYTPSMRKKLMSS 383


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  669 bits (1725), Expect(2) = 0.0
 Identities = 334/629 (53%), Positives = 439/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+TFIDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+IWGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRIWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       IIES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIIESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  LI+ GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (248), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQIGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  660 bits (1704), Expect(2) = 0.0
 Identities = 329/628 (52%), Positives = 437/628 (69%), Gaps = 24/628 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNI-DMNKIASSYIVCTF--- 1645
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++ D    + ++I  T    
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYEYGGLFRFSLSDFCNKSVNHICGTVDDE 430

Query: 1644 -SIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEPL 1471
             ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   PL
Sbjct: 431  ANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPL 490

Query: 1470 DLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQFN 1291
            +L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ +
Sbjct: 491  ELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLD 550

Query: 1290 RKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIML 1111
            RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++ 
Sbjct: 551  RKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLD 610

Query: 1110 YSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSDP 931
             +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCL  V     
Sbjct: 611  TAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLVKVNVPIT 670

Query: 930  KRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSKD 772
            K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  +
Sbjct: 671  KKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTN 730

Query: 771  SGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLND 625
            SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++D
Sbjct: 731  SGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVDD 789

Query: 624  DPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPDG 445
             P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPDG
Sbjct: 790  TPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDG 849

Query: 444  TVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFLN 265
            T+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFLN
Sbjct: 850  TIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLN 909

Query: 264  GDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINESD 85
            G+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+D
Sbjct: 910  GELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEAD 969

Query: 84   KCIYYKSENNTCVIICLYVDDLLIFGSN 1
            KC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 970  KCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  102 bits (255), Expect(2) = 0.0
 Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+ NGK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSNGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  662 bits (1708), Expect(2) = 0.0
 Identities = 330/629 (52%), Positives = 437/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+TFIDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG A+RKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAKRKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKHKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  101 bits (251), Expect(2) = 0.0
 Identities = 67/194 (34%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
 Frame = -3

Query: 2321 LAVSHNKNKNQAALKPKPKNMKSN-----QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQV 2160
            L V     +  AA K       +N     QN+  GK    +  N +   +N  N +  + 
Sbjct: 181  LDVEEKAREKDAASKDDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER 240

Query: 2159 ICYSCNKPGHLARNCRSKNKG--APQAHVTEEPLVAM-----------ISEVNLISGSEG 2019
             C+ C + GHLAR C S+ KG  AP    ++   V +           +  V  ++ S  
Sbjct: 241  TCFVCGQVGHLARKC-SQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTN 299

Query: 2018 WWIDTGASRHVCYDRSLFKSYTEIGDKKVLLGDSHTTAVLGTGEVELKFTSGRTVILKDV 1839
            WW+DTGA+ HVC D SLF SY       VL+G+    +V G G V+LKFTSG+ V LK+V
Sbjct: 300  WWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNV 359

Query: 1838 LHTPEMRKNLVFSS 1797
             H P + +NLV  S
Sbjct: 360  QHVPSIDRNLVSGS 373


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  663 bits (1710), Expect(2) = 0.0
 Identities = 331/629 (52%), Positives = 437/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 332  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 390

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 391  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 450

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+TFIDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 451  LELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 510

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 511  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAML 570

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 571  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 630

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 631  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAIFFESFFPMKDT 690

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 691  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 749

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 750  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 809

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 810  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 869

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 870  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 929

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 930  DKCVYYRHGGGEGVILCLYVDDILIFGTN 958



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 171  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 230

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 231  KSANVTIGNTGDGSGYGNLPAVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 290

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 291  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 334


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  662 bits (1707), Expect(2) = 0.0
 Identities = 331/629 (52%), Positives = 436/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 460  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 518

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 519  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 578

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 579  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 638

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 639  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 698

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNRIP+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 699  DTAGLPKAWWGEALLTSNHVLNRIPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 758

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 759  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 818

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 819  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 877

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 878  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 937

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 938  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 997

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 998  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 1057

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 1058 DKCVYYRHGGGEGVILCLYVDDILIFGTN 1086



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 299  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 358

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 359  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 418

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 419  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 462


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  662 bits (1707), Expect(2) = 0.0
 Identities = 331/629 (52%), Positives = 435/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKSSKCHSCVQSKQPRKPHKAAKERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AE+ENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEIENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSGGNDVREPRN-----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S        P             ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPSEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EAI  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAICSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  LI+ GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  661 bits (1706), Expect(2) = 0.0
 Identities = 330/629 (52%), Positives = 436/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  661 bits (1706), Expect(2) = 0.0
 Identities = 330/629 (52%), Positives = 436/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  661 bits (1706), Expect(2) = 0.0
 Identities = 330/629 (52%), Positives = 436/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  661 bits (1706), Expect(2) = 0.0
 Identities = 330/629 (52%), Positives = 436/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  660 bits (1703), Expect(2) = 0.0
 Identities = 329/629 (52%), Positives = 435/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +R+I R+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRRINRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  YVLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNYVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (250), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPSVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1460

 Score =  660 bits (1703), Expect(2) = 0.0
 Identities = 329/629 (52%), Positives = 436/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F++ GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  660 bits (1703), Expect(2) = 0.0
 Identities = 329/629 (52%), Positives = 436/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F++ GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAT58810.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1320

 Score =  660 bits (1703), Expect(2) = 0.0
 Identities = 330/629 (52%), Positives = 434/629 (68%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S    
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE 430

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
            T ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K    PHK+   R   P
Sbjct: 431  T-NVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPHKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ ++       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEIPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSGGNDVREP-----------RNEDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S     +  P             ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSLITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNIGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  660 bits (1703), Expect(2) = 0.0
 Identities = 329/629 (52%), Positives = 436/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F++ GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  660 bits (1703), Expect(2) = 0.0
 Identities = 329/629 (52%), Positives = 436/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F++ GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAT38001.1| Putative polyprotein [Oryza sativa Japonica Group]
          Length = 1297

 Score =  660 bits (1703), Expect(2) = 0.0
 Identities = 330/629 (52%), Positives = 434/629 (68%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S    
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE 430

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
            T ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K    PHK+   R   P
Sbjct: 431  T-NVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPHKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ ++       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEIPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSGGNDVREP-----------RNEDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S     +  P             ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSLITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNIGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
            Group]
          Length = 1911

 Score =  659 bits (1700), Expect(2) = 0.0
 Identities = 329/629 (52%), Positives = 435/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 371  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 429

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 430  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 489

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T PYSPE NG AERKNRTLT+LV A++
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 669

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 670  TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 729

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 730  HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 788

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 789  DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 848

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 849  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 908

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F++ GQE KVCKL KSLYGLKQAPKQWH+KFD  L   GF +NE+
Sbjct: 909  NGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTFAGFAVNEA 968

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 969  DKCVYYRHGGGEGVILCLYVDDILIFGTN 997



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 210  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 269

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WW+DTGA+ HVC D SLF SY       VL
Sbjct: 270  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVL 329

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 330  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 373


>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1861

 Score =  658 bits (1697), Expect(2) = 0.0
 Identities = 329/629 (52%), Positives = 435/629 (69%), Gaps = 25/629 (3%)
 Frame = -2

Query: 1812 SGFLLNKAGFIQTIGSNQYTITKNSIFVGKGYAVDGMFKLNID------MNKIASSYIVC 1651
            SG  L + GF     SN+  ++K+  F+GKGY   G+F+ ++       +N I  S +  
Sbjct: 785  SGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGS-VDD 843

Query: 1650 TFSIWHARLCHVSKKLVKHMSSLGFIPAMSMKDFEKCESCSQAKITKTPHKSVV-RESEP 1474
              ++WH+RLCH++  L+  +SS+  IP  S+    KC SC Q+K  + PHK+   R   P
Sbjct: 844  EANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAP 903

Query: 1473 LDLIHSDICEYEGTLTRNGKRYFITFIDDCSNYTYVYLMRHKNEAIDMFKIFIAEVENQF 1294
            L+L+HSD+CE  G LT+ GKRYF+T IDD + + YVYL++ K+EA+D FKI+ AEVENQ 
Sbjct: 904  LELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 963

Query: 1293 NRKIKRMRSDRGTEYDSNEFNEIYKSTGIIHETTAPYSPEMNGKAERKNRTLTELVVAIM 1114
            +RKIKR+RSDRG E+ SNEF+   +  GIIHE T P SPE NG AERKNRTLT+LV A++
Sbjct: 964  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPCSPESNGIAERKNRTLTDLVNAML 1023

Query: 1113 LYSGAAPYWWGEILNTVCYVLNRIPSSKMNKSPFEIWRNRKPNVSYLKIWGCLAYVRKSD 934
              +G    WWGE L T  +VLNR+P+   +K+P+EIW  RKP++SYL+ WGCLA V    
Sbjct: 1024 DTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPI 1083

Query: 933  PKRSKLASRAYKCVFIGYSNTSKAYRFYNLEDKV-------IIESVDADFFEDKFPFKSK 775
             K+ KL  +   CVF+GY++ S AYRF  ++ +V       I+ES DA FFE  FP K  
Sbjct: 1084 TKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDT 1143

Query: 774  DSGGSHTSSG-GNDVREPRN----------EDIDDAEPRRSKRARIAKDYGPDFEIFTLN 628
             SG +  S    + +  P            ED+ +A PRRSKR R AK +G DF ++ ++
Sbjct: 1144 HSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEA-PRRSKRQRTAKSFGDDFTVYLVD 1202

Query: 627  DDPSTLRDALSSPDADLWQEAINDEMDSLESNKTWHLVDLPPGCKTIGCKWVLKRKLRPD 448
            D P ++ +A +SPDAD W+EA+  EMDS+ +N TW + + P GCK +GCKWV K+KLRPD
Sbjct: 1203 DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 1262

Query: 447  GTVEKYKARLVAKGYRQKENIDFFDTYSPVTRITSIRVLIAVAAIHNLVIHQMDVKTAFL 268
            GT+EKYKARLVAKGY QKE  DFFDTYSPV R+T+IRVL+++AA H L++HQMDVKTAFL
Sbjct: 1263 GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 1322

Query: 267  NGDLEEEIYMDQPETFIVPGQEHKVCKLDKSLYGLKQAPKQWHDKFDGLLITNGFRINES 88
            NG+L+EEIYMDQP+ F+V GQE KVCKL KSLYGLKQAPKQWH+KFD  L + GF +NE+
Sbjct: 1323 NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 1382

Query: 87   DKCIYYKSENNTCVIICLYVDDLLIFGSN 1
            DKC+YY+      VI+CLYVDD+LIFG+N
Sbjct: 1383 DKCVYYRHGGGEGVILCLYVDDILIFGTN 1411



 Score =  100 bits (250), Expect(2) = 0.0
 Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
 Frame = -3

Query: 2249 QNRKNGKAGHNKNYN-QHPSRNGQNRDSVQVICYSCNKPGHLARNC-RSKNKGAPQAHVT 2076
            QN+  GK    +  N +   +N  N +  +  C+ C + GHLAR C + K   AP    +
Sbjct: 624  QNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTS 683

Query: 2075 EEPLVAM-----------ISEVNLISGSEGWWIDTGASRHVCYDRSLFKSYTEIGDKKVL 1929
            +   V +           +  V  ++ S  WWIDTGA+ HVC D SLF SY       VL
Sbjct: 684  KSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWIDTGANIHVCADISLFSSYQVARGSTVL 743

Query: 1928 LGDSHTTAVLGTGEVELKFTSGRTVILKDVLHTPEMRKNLVFSS 1797
            +G+    +V G G V+LKFTSG+ V LK+V H P + +NLV  S
Sbjct: 744  MGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGS 787