BLASTX nr result
ID: Aconitum23_contig00009132
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum23_contig00009132
(865 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 149 3e-33
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 142 3e-31
gb|AAD29756.1|AF076243_3 putative transposon protein [Arabidopsi... 138 5e-30
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 137 1e-29
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 135 4e-29
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 134 7e-29
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 133 1e-28
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 133 1e-28
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 133 2e-28
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 133 2e-28
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 132 3e-28
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 131 6e-28
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 131 6e-28
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 131 6e-28
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 131 7e-28
emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera] 130 1e-27
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 130 1e-27
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 130 2e-27
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 127 8e-27
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 127 8e-27
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 149 bits (376), Expect = 3e-33
Identities = 76/146 (52%), Positives = 103/146 (70%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LD+ +ST+GYVF + G VSWRS+LQ T ALSTT+A+Y+A +A+KEA+WL
Sbjct: 148 DSDFAGDLDKQRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKG 207
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ D+Q+ I LAKNQ +HARTKHIDV+YH+VR++IE DV L K+ T
Sbjct: 208 LLGDLGVIQENIAVFCDNQSAIFLAKNQTYHARTKHIDVKYHYVREIIEGGDVLLKKIDT 267
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP+++LTKVV+ KFQ CLKL+Q+
Sbjct: 268 KDNPSDMLTKVVSEVKFQHCLKLIQI 293
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 142 bits (358), Expect = 3e-31
Identities = 73/146 (50%), Positives = 97/146 (66%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALW--- 519
D D LDR +S +GYVF + G+ VSW++ LQ ALSTT+A++MA+ +A KEALW
Sbjct: 438 DSDYAADLDRRRSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKG 497
Query: 520 -------------LWYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
LW DSQ+ I L+KN HH RTKHIDVRY+F+RDV+E DV +LK+HT
Sbjct: 498 LMKDLGLEQDKVTLWCDSQSAICLSKNSTHHERTKHIDVRYNFIRDVVEAGDVDVLKIHT 557
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
S NP + LTK + +KFQ L+LL++
Sbjct: 558 SRNPADALTKSIPVNKFQSALELLKL 583
>gb|AAD29756.1|AF076243_3 putative transposon protein [Arabidopsis thaliana]
gi|7267201|emb|CAB77912.1| putative transposon protein
[Arabidopsis thaliana]
Length = 570
Score = 138 bits (348), Expect = 5e-30
Identities = 69/137 (50%), Positives = 94/137 (68%), Gaps = 16/137 (11%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LD+ +STTGYVF + G+ VSW+S LQ+T A+ TT+A+Y+A+ +A+KEALW+
Sbjct: 434 DSDYAADLDKRRSTTGYVFTVGGNTVSWKSNLQNTIAIPTTEAEYVAITEAVKEALWMQG 493
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
W DSQ VI L+K + H RTKHI V+YHF+RDVIE+ DV +LK+HT
Sbjct: 494 LLKDMGVKQDKVLVWSDSQCVISLSKKNMFHERTKHIAVKYHFIRDVIENGDVEVLKIHT 553
Query: 661 SENPTNILTKVVTGSKF 711
S+NP ++LTKV+ KF
Sbjct: 554 SQNPADMLTKVIPVQKF 570
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 137 bits (344), Expect = 1e-29
Identities = 75/174 (43%), Positives = 106/174 (60%), Gaps = 16/174 (9%)
Frame = +1
Query: 274 KGLDIKWGDHMDL*TMSETPLLPT*D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHT 453
+ L + +G + L ET L D D +D +S TGYVF G VSW++ LQ
Sbjct: 1039 RSLGLVYGGNSQL----ETQLQGFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANLQSV 1094
Query: 454 RALSTTKAKYMAVAKAIKEALWL----------------WYDSQNVIHLAKNQVHHARTK 585
ALSTT+A+YMA+ +A+KEA+WL + D+Q+ IHLAKNQ H R+K
Sbjct: 1095 VALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLAKNQSFHERSK 1154
Query: 586 HIDVRYHFVRDVIEDEDVSLLKVHTSENPTNILTKVVTGSKFQLCLKLLQVGHC 747
HIDVR HFVRD+I ++ + KVHT +NP+++LTK + +KF+ CL L+ +G C
Sbjct: 1155 HIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTKSLNVTKFKHCLNLINMGDC 1208
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 135 bits (340), Expect = 4e-29
Identities = 72/146 (49%), Positives = 95/146 (65%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TG+VF G+ +SW+S LQ ALSTT+A+YMA+A+A+KEA+WL
Sbjct: 1194 DSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRG 1253
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
DSQ+ I L+KN VHH RTKHIDVRYHF+R+ I D ++ ++K+ T
Sbjct: 1254 LAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVKIST 1313
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+ NP +I TK V SK Q LKLL+V
Sbjct: 1314 TWNPADIFTKTVPVSKLQEALKLLRV 1339
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 134 bits (338), Expect = 7e-29
Identities = 71/146 (48%), Positives = 95/146 (65%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TGYVF I G VSW++ LQ T ALSTT+A+YMA+++A KEA+WL
Sbjct: 1034 DSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRG 1093
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I L K+Q+ H RTKHIDVRYHF+R VI + DV + K+ T
Sbjct: 1094 LYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKIST 1153
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP +++TK V +KF+LC L+ V
Sbjct: 1154 HDNPADMMTKPVPATKFELCSSLVGV 1179
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 133 bits (335), Expect = 1e-28
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TGYVF I G VSW++ LQ T ALSTT+A+YMA+++A KEALWL
Sbjct: 797 DSDFPGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEALWLRG 856
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I+L ++Q+ H RTKHIDVRYHF+R VI + DV + K+ T
Sbjct: 857 LYTELCGVTSCINIFCDSQSAIYLTEDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKIST 916
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP +++ K V +KF+LC L+ V
Sbjct: 917 HDNPADMMIKAVPATKFELCSSLVGV 942
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 133 bits (335), Expect = 1e-28
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TGYVF I G VSW++ LQ T ALSTT+A+YMA+++A KEALWL
Sbjct: 797 DSDFPGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEALWLRG 856
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I+L ++Q+ H RTKHIDVRYHF+R VI + DV + K+ T
Sbjct: 857 LYTELCGVTSCINIFCDSQSAIYLTEDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKIST 916
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP +++ K V +KF+LC L+ V
Sbjct: 917 HDNPADMMIKAVPATKFELCSSLVGV 942
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 133 bits (334), Expect = 2e-28
Identities = 66/139 (47%), Positives = 96/139 (69%), Gaps = 16/139 (11%)
Frame = +1
Query: 370 LDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL--------- 522
LDR +S +GYVF I G+ VSW++ LQ A+STT+A+Y+A+A+A KEA+W+
Sbjct: 1214 LDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGM 1273
Query: 523 -------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHTSENPTNI 681
W DSQ+ I L+KN V+H RTKHIDVR++++RDV+E DV +LK+HTS NP +
Sbjct: 1274 QQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDA 1333
Query: 682 LTKVVTGSKFQLCLKLLQV 738
LTK + +KF+ L +L++
Sbjct: 1334 LTKCIPVNKFKSALGVLKL 1352
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 133 bits (334), Expect = 2e-28
Identities = 68/146 (46%), Positives = 95/146 (65%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LD+ +S TG VF + G+ +SW+S LQ A STT+++YM++ +A+KEA+WL
Sbjct: 1208 DADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKG 1267
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I L+KN VHH RTKHIDV+YHF+R++I D V +LK+ T
Sbjct: 1268 LLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTVEVLKIST 1327
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP +I TKV+ SKFQ L LL+V
Sbjct: 1328 EKNPADIFTKVLAVSKFQAALNLLRV 1353
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 132 bits (332), Expect = 3e-28
Identities = 64/144 (44%), Positives = 97/144 (67%), Gaps = 16/144 (11%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D+ +D +S+TGY+F G +SW+S LQ ALSTT+A+Y+A + KE +WL
Sbjct: 1180 DADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKR 1239
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I L+KN ++HARTKHIDVRYH++R++++DE + +LK+ T
Sbjct: 1240 FLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKIST 1299
Query: 661 SENPTNILTKVVTGSKFQLCLKLL 732
+ENP ++LTKVV +KF+LC +L+
Sbjct: 1300 NENPADMLTKVVPRNKFELCKELV 1323
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 131 bits (330), Expect = 6e-28
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TGYVF I G VSW++ LQ T ALSTT+A+YMA+++A KEA+WL
Sbjct: 1133 DSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAISEACKEAIWLRG 1192
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I L K+Q+ H RTKHIDVRYH +R VI + DV + K+ T
Sbjct: 1193 LYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHIIRGVIVEGDVKVCKIST 1252
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP +++TK V+ +KF+LC L+ V
Sbjct: 1253 HDNPADMMTKPVSATKFELCSSLVGV 1278
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 131 bits (330), Expect = 6e-28
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TGYVF I G VSW++ LQ T ALSTT+A+YMA+++A KEA+WL
Sbjct: 1165 DSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAISEACKEAIWLRG 1224
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I L K+Q+ H RTKHIDVRYH +R VI + DV + K+ T
Sbjct: 1225 LYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHIIRGVIVEGDVKVCKIST 1284
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP +++TK V+ +KF+LC L+ V
Sbjct: 1285 HDNPADMMTKPVSATKFELCSSLVGV 1310
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 131 bits (330), Expect = 6e-28
Identities = 68/146 (46%), Positives = 94/146 (64%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TGYVF + G VSW++ LQ T ALSTT+A+YMA+++A KE +WL
Sbjct: 1094 DSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRG 1153
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I L K+Q+ H RTKHID+RYHF+R VI + DV + K+ T
Sbjct: 1154 LYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKIST 1213
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP +++TK V +KF+LC L+ V
Sbjct: 1214 HDNPVDMMTKPVPATKFELCSSLVGV 1239
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 131 bits (329), Expect = 7e-28
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S GYVF I G VSW++ LQ T ALSTT+A+YMA+++A KE +WL
Sbjct: 991 DSDFAGDLDRRRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAISEACKETIWLRG 1050
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I L K+Q+ H RTKHIDVRYHF+R VI + DV + K+ T
Sbjct: 1051 LYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRSVITEGDVKVCKIST 1110
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP +++TK V +KF+LC L+ V
Sbjct: 1111 HDNPADMMTKPVPATKFELCSSLVGV 1136
>emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]
Length = 406
Score = 130 bits (328), Expect = 1e-27
Identities = 67/143 (46%), Positives = 93/143 (65%), Gaps = 16/143 (11%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LD +ST GYVF + G + W+SM+Q AL TTK++YMA+A+ KE+LWL
Sbjct: 263 DADYAGDLDERRSTIGYVFTLGGGPICWKSMIQSLVALYTTKSEYMAIAETTKESLWLTG 322
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
++D+Q+ I+L KNQV+HARTKHIDVR+H + +++ ++ L KVHT
Sbjct: 323 LVKELGIQQGGVQLYFDNQSAIYLEKNQVYHARTKHIDVRFHKISELVSSGELLLKKVHT 382
Query: 661 SENPTNILTKVVTGSKFQLCLKL 729
SEN ++LTK VT KF+ CLKL
Sbjct: 383 SENAADMLTKPVTTEKFKHCLKL 405
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 130 bits (328), Expect = 1e-27
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 16/146 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TGYVF I G VSW++ LQ T ALSTT+ +YMA+++A KEA+WL
Sbjct: 1064 DSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEVEYMAISEACKEAIWLRG 1123
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I K+Q+ H RTKHIDVRYHF+R VI + DV + K+ T
Sbjct: 1124 LYTELCGVTSCINIFCDSQSAICFTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKIST 1183
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQV 738
+NP +++TK V +KF+LC L+ V
Sbjct: 1184 HDNPADMMTKPVPTTKFELCSSLVGV 1209
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 130 bits (326), Expect = 2e-27
Identities = 68/152 (44%), Positives = 95/152 (62%), Gaps = 16/152 (10%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S GYVF I G VSW++ LQ T ALSTT+A+YMA+++A KEA+WL
Sbjct: 1392 DSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRG 1451
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
+ DSQ+ I L K+Q+ H RTKHIDVRYHF+R +I + DV + K+
Sbjct: 1452 LYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISI 1511
Query: 661 SENPTNILTKVVTGSKFQLCLKLLQVGHCDFP 756
+NP +++TK V +KF+LC L+ + + P
Sbjct: 1512 HDNPADMMTKPVPATKFELCSSLVILSDANVP 1543
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 127 bits (320), Expect = 8e-27
Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 16/144 (11%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TGYVF I VSWR+ LQ ALSTT+A+YMA+ +A KE +WL
Sbjct: 1186 DSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKG 1245
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
DSQ+ I+L K+Q+ H RTKHID++YHFVRDVIE+ + + K+ T
Sbjct: 1246 LYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKIST 1305
Query: 661 SENPTNILTKVVTGSKFQLCLKLL 732
+NP +++TK + +KF+LC L+
Sbjct: 1306 HDNPADMMTKPIPVAKFELCSSLV 1329
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 127 bits (320), Expect = 8e-27
Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 16/144 (11%)
Frame = +1
Query: 349 D*DLVHPLDRIQSTTGYVFKIHGSLVSWRSMLQHTRALSTTKAKYMAVAKAIKEALWL-- 522
D D LDR +S TGYVF I VSWR+ LQ ALSTT+A+YMA+ +A KE +WL
Sbjct: 1186 DSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKG 1245
Query: 523 --------------WYDSQNVIHLAKNQVHHARTKHIDVRYHFVRDVIEDEDVSLLKVHT 660
DSQ+ I+L K+Q+ H RTKHID++YHFVRDVIE+ + + K+ T
Sbjct: 1246 LYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKIST 1305
Query: 661 SENPTNILTKVVTGSKFQLCLKLL 732
+NP +++TK + +KF+LC L+
Sbjct: 1306 HDNPADMMTKPIPVAKFELCSSLV 1329