BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00008475
         (1448 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I sub...   492   e-136
ref|XP_009407703.1| PREDICTED: DNA-directed RNA polymerase I sub...   483   e-133
ref|XP_009394527.1| PREDICTED: DNA-directed RNA polymerase I sub...   478   e-132
ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I sub...   476   e-131
ref|XP_010922210.1| PREDICTED: DNA-directed RNA polymerase I sub...   475   e-131
gb|AIO05696.1| putative RNA polymerase AI large subunit, partial...   467   e-128
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...   464   e-128
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   464   e-128
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...   464   e-128
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   464   e-128
ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I sub...   458   e-126
gb|KDP37347.1| hypothetical protein JCGZ_06801 [Jatropha curcas]      458   e-126
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub...   457   e-125
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              457   e-125
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]   457   e-125
ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I sub...   456   e-125
ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I sub...   455   e-125
ref|XP_008443105.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   454   e-125
ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I sub...   453   e-124
ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I sub...   453   e-124

>ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nelumbo
            nucifera]
          Length = 1676

 Score =  492 bits (1267), Expect = e-136
 Identities = 266/473 (56%), Positives = 326/473 (68%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            IH+N+ ++GVIDKAQFG YGL+HTVQELYG + AG LLS LSRLFT+FLQ+HGFTCGIDD
Sbjct: 787  IHKNELVHGVIDKAQFGGYGLVHTVQELYGSNAAGVLLSVLSRLFTIFLQMHGFTCGIDD 846

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+    D+ R +KL   + + +  + +F    D   +                   KLQ
Sbjct: 847  LLIVHRYDLERMKKLDKNEQIGEFEHWQFVGCADGDKDPI-----------------KLQ 889

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IEKA+R +G+SA+  LD+ M+ A + L +EVN  +F                   GL 
Sbjct: 890  VEIEKAIRRNGDSAVTRLDRRMSGAMNKLTSEVNKNLFPE-----------------GLC 932

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K FP+NC  LMT +GAKG  VN            LEGKRVP M+SGKTLPCFPPWDPA R
Sbjct: 933  KPFPKNCLSLMTATGAKGGMVNSTQICSLLGQQELEGKRVPRMVSGKTLPCFPPWDPASR 992

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVK+LE LKV YD+T
Sbjct: 993  AGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLEGLKVCYDYT 1052

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGSVVQF YGEDG+DVHKTSF+ +F+ +A+N R+ +ER  N    D++++ +    
Sbjct: 1053 VRDADGSVVQFIYGEDGIDVHKTSFLEEFEALAANHRIVQERFNNQL--DSEVLFKYDYI 1110

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLSSIAQPG 162
            + L + L  K  + + + S+ +  SL++           K+KD M LM  KY+SS+AQPG
Sbjct: 1111 KKLPVALEGKAKDYIDTLSKKKLKSLNL----------RKRKDFMKLMRSKYISSLAQPG 1160

Query: 161  EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            EPVGV+AAQSVGEPSTQMTLNTFHHAG+ + NVTLGIPRLQEILMRASEKIQT
Sbjct: 1161 EPVGVVAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMRASEKIQT 1213


>ref|XP_009407703.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Musa
            acuminata subsp. malaccensis]
          Length = 1640

 Score =  483 bits (1243), Expect = e-133
 Identities = 260/474 (54%), Positives = 323/474 (68%), Gaps = 1/474 (0%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            IH ND ++G+IDKAQFG YGL+H V ELYGPD AG LLS  SRLFT FLQ+HGFTCG+DD
Sbjct: 749  IHNNDLVHGMIDKAQFGTYGLVHAVHELYGPDVAGMLLSVFSRLFTSFLQMHGFTCGVDD 808

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LLL +  D+ R++ L+ ++   +E +++FT TKD                   G+  +LQ
Sbjct: 809  LLLSQKSDMERKKILEKSETQAEEVHMRFTRTKDGD-----------------GDPMELQ 851

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IEK +R +G+SA  LLD+ M+N+ ++L +E+N  +F N                 GLS
Sbjct: 852  REIEKVLRGNGDSATALLDRMMSNSLNSLTSEINQTLFPN-----------------GLS 894

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K F +NC  LMT +GAKG  VN            LEGKRVP M+SGKTLPCFPPWD + R
Sbjct: 895  KPFLKNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDISSR 954

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            +GGFI+D FLTGLRPQEYYFHCMAGR+GLVDTA+KTSRSGYLQRCL+K+LECLKV+YDHT
Sbjct: 955  SGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVSYDHT 1014

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGSVVQF YGEDGVDV KTS+IS+F  ++ N  V  ++  + +  D  L       
Sbjct: 1015 VRDADGSVVQFIYGEDGVDVLKTSYISEFKMLSDNRNVVLQKFSD-QIVDTSL------- 1066

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRST-DLKQKDIMNLMMLKYLSSIAQP 165
                 K    + E+ CS   ++  + D V +K K S   + +KD M LM LKYLSS+A+P
Sbjct: 1067 ----AKSNAYIRELPCS---LRDNATDFVLKKQKSSPHQINKKDFMKLMKLKYLSSLAEP 1119

Query: 164  GEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            GE VGV+AAQSVGEPSTQMTLNTFH AG+ D NVTLGIPRLQEILM AS+ I+T
Sbjct: 1120 GEAVGVVAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDIRT 1173


>ref|XP_009394527.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Musa
            acuminata subsp. malaccensis]
          Length = 1641

 Score =  478 bits (1230), Expect = e-132
 Identities = 258/475 (54%), Positives = 321/475 (67%), Gaps = 2/475 (0%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            IH N+ ++G+IDKAQFG YGL+H V ELYGPD AG+LLS  SRLFT FLQ+HGFTCG+DD
Sbjct: 745  IHNNELVHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQIHGFTCGVDD 804

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LLL +  DI R R L+ +++   E +++FT TKD                   G+  KLQ
Sbjct: 805  LLLSQKSDIERERILKKSEIQSGEVHMRFTRTKDGD-----------------GDPMKLQ 847

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IEK +R +G+SA  LLD+ M+N+ ++L +E+N  +F N                 GL 
Sbjct: 848  REIEKVLRGNGDSATALLDRMMSNSLNSLTSEINQTLFPN-----------------GLL 890

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K F +NC  LMT +GAKG  VN            LEGKRVP M+SGKTLPCFPPWD + R
Sbjct: 891  KPFLKNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDISSR 950

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FLTGLRPQEYYFHCMAGR+GLVDTA+KTSRSGYLQRC++K+LECLKV+YDHT
Sbjct: 951  AGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCIIKNLECLKVSYDHT 1010

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGSV+QF YGEDG+DV K S IS+F  +  N +V  ++  + +  D  L       
Sbjct: 1011 VRDADGSVIQFIYGEDGIDVLKASHISEFKMLLDNQKVVLQKFSD-QISDTSL------- 1062

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRS--TDLKQKDIMNLMMLKYLSSIAQ 168
                 K    + E+ CS   ++  + D +  KN++S    + QKD M LM LKYLSS+A+
Sbjct: 1063 ----AKSNAYIRELPCS---LRDKATDFI-LKNQKSFPHQINQKDFMKLMKLKYLSSLAE 1114

Query: 167  PGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            PGE VGV+AAQSVGEPSTQMTLNTFH AG+ D NVTLGIPRLQEILM AS+ I+T
Sbjct: 1115 PGEAVGVVAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDIRT 1169


>ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Phoenix
            dactylifera]
          Length = 1665

 Score =  476 bits (1224), Expect = e-131
 Identities = 263/481 (54%), Positives = 327/481 (67%), Gaps = 2/481 (0%)
 Frame = -1

Query: 1439 NDPPFQIHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGF 1260
            N+    I+ ND ++G++DKAQFGKYGL+HT+ ELYG DTAG LLS  SRLFTLFLQ+HGF
Sbjct: 755  NELKLLIYNNDLIHGMVDKAQFGKYGLVHTIHELYGADTAGILLSVFSRLFTLFLQMHGF 814

Query: 1259 TCGIDDLLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAG 1080
            TCG+DDLLL ++ D+ R+R L+ ++ + ++ +++FT  KD                   G
Sbjct: 815  TCGVDDLLLDQSSDMERKRILEKSEALSEDVHIRFTAFKD-------------------G 855

Query: 1079 ER--RKLQDGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKD 906
            +R   KLQ  IEK +  + ESA  LLD+ M+++ + L +EVN  +F +            
Sbjct: 856  DRDPMKLQREIEKVLCRNRESATTLLDRMMSSSMNVLTSEVNQTLFPS------------ 903

Query: 905  KSEELGLSKAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCF 726
                 GL K F RNC  LMT +GAKG  VN            LEGKRVP M+SGKTLPCF
Sbjct: 904  -----GLQKPFLRNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCF 958

Query: 725  PPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLEC 546
            PPWD + RAGGFI+D FLTGLRPQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCLVK+LEC
Sbjct: 959  PPWDVSCRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLVKNLEC 1018

Query: 545  LKVNYDHTVRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAK 366
            LKV+YDHTVRDADGSV+QF YGEDGVDV KTSFIS+   +A+N  V  +RL + +  DA 
Sbjct: 1019 LKVSYDHTVRDADGSVIQFMYGEDGVDVLKTSFISELGALAANQTVVLDRLSS-QLEDAH 1077

Query: 365  LMLRRPDNEGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKY 186
            L      + G   +L   + E   + +++       + Q       +K+KD+M LM LKY
Sbjct: 1078 L----SKSNGYIKELPYLLRENATTFARLSKNHQGSLHQ-------IKRKDLMKLMKLKY 1126

Query: 185  LSSIAQPGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQ 6
            LSS+A+PGEPVGVIAAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I+
Sbjct: 1127 LSSLAEPGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVDIR 1186

Query: 5    T 3
            T
Sbjct: 1187 T 1187


>ref|XP_010922210.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Elaeis
            guineensis]
          Length = 1674

 Score =  475 bits (1222), Expect = e-131
 Identities = 263/481 (54%), Positives = 328/481 (68%), Gaps = 2/481 (0%)
 Frame = -1

Query: 1439 NDPPFQIHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGF 1260
            N+    I++ND ++G++DKAQFGKYGL+HTV ELYG DTAG LLS  SRLFTLFLQ+HGF
Sbjct: 765  NELKLLIYKNDLIHGMVDKAQFGKYGLVHTVHELYGADTAGILLSVFSRLFTLFLQMHGF 824

Query: 1259 TCGIDDLLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAG 1080
            TCG+DDLLL ++ D+ R+R L+ ++ + ++ +++FT  KD                   G
Sbjct: 825  TCGVDDLLLDQSSDMERKRILEKSEALSEDVHIRFTAFKD-------------------G 865

Query: 1079 ERR--KLQDGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKD 906
            +R   KLQ  IEK +  + ESA   LD+ M+++ + L +EVN  +F +            
Sbjct: 866  DRDPVKLQREIEKTLCRNRESATASLDRMMSSSMNVLTSEVNQTLFPS------------ 913

Query: 905  KSEELGLSKAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCF 726
                 GL K F RNC  LMT +GAKG  VN            LEGKRVP M+SGKTLPCF
Sbjct: 914  -----GLQKPFLRNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCF 968

Query: 725  PPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLEC 546
            PPWD + RAGGFI+D FLTGLRPQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCLVK+LEC
Sbjct: 969  PPWDISCRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLVKNLEC 1028

Query: 545  LKVNYDHTVRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAK 366
            LKV+YDHTVRDADGSV+QF YGEDGVDV KTSFIS+   +A+N  V  +RL + +  DA 
Sbjct: 1029 LKVSYDHTVRDADGSVIQFMYGEDGVDVLKTSFISELGALAANQTVVLDRLSS-QLEDAH 1087

Query: 365  LMLRRPDNEGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKY 186
            L      + G   +L   + E   + +++       +RQ       +++KD+M LM LKY
Sbjct: 1088 L----SKSNGYLKELPYLLRENATTFARLSKNHQGSLRQ-------IRRKDLMKLMKLKY 1136

Query: 185  LSSIAQPGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQ 6
            LSS+A+PGEPVGVIAAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I+
Sbjct: 1137 LSSLAEPGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADIR 1196

Query: 5    T 3
            T
Sbjct: 1197 T 1197


>gb|AIO05696.1| putative RNA polymerase AI large subunit, partial [Cocos nucifera]
          Length = 1669

 Score =  467 bits (1202), Expect = e-128
 Identities = 261/481 (54%), Positives = 327/481 (67%), Gaps = 2/481 (0%)
 Frame = -1

Query: 1439 NDPPFQIHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGF 1260
            N+    I++ND ++G+IDKAQFGKYGL+HTV ELYG DTAG LLS  SRLFTLFLQ+HGF
Sbjct: 762  NELKLLIYKNDLIHGMIDKAQFGKYGLVHTVHELYGADTAGILLSVFSRLFTLFLQMHGF 821

Query: 1259 TCGIDDLLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAG 1080
            TCG+DDLLL ++ D+ R+R L+ ++ + ++ +++FT  KD                   G
Sbjct: 822  TCGVDDLLLDQSSDMERKRILEKSEALSEDVHIRFTAFKD-------------------G 862

Query: 1079 ERR--KLQDGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKD 906
            +R   KLQ  IE   R + ESA  LLD+ M+++ + L +EVN  +F +            
Sbjct: 863  DRDPVKLQMEIEVLCR-NRESATTLLDRMMSSSMNVLTSEVNQTLFPS------------ 909

Query: 905  KSEELGLSKAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCF 726
                 GL K F RNC  LMT +GAKG  VN            LEGKRVP M+SGKTLPCF
Sbjct: 910  -----GLQKPFLRNCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCF 964

Query: 725  PPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLEC 546
            PPWD + RAGGFI+D FL+GLRPQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCLVK+LEC
Sbjct: 965  PPWDISCRAGGFISDRFLSGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLVKNLEC 1024

Query: 545  LKVNYDHTVRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAK 366
            LKV+YDHTVRDADGSV+QF YGEDGVDV KTSFIS+   +A+N  V  +RL + +  DA 
Sbjct: 1025 LKVSYDHTVRDADGSVIQFMYGEDGVDVLKTSFISELGALAANQTVVLDRLSS-QLEDAH 1083

Query: 365  LMLRRPDNEGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKY 186
            L      + G   +L   + E   + +++       + Q       ++++D+M LM LKY
Sbjct: 1084 L----SKSNGYIKELPYLLRENATTFARLSKNHQGSLHQ-------IRRRDLMKLMKLKY 1132

Query: 185  LSSIAQPGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQ 6
            +SS+A+PGEPVGVIAAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I+
Sbjct: 1133 MSSLAEPGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADIR 1192

Query: 5    T 3
            T
Sbjct: 1193 T 1193


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  464 bits (1195), Expect = e-128
 Identities = 260/479 (54%), Positives = 321/479 (67%), Gaps = 6/479 (1%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            I+ ND + GVIDKAQF  YGL+HTVQELYG +TAG LLS  SRLFT+FLQ+HGFTCG+DD
Sbjct: 501  IYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDD 560

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  + DI R+++L+D +    EA+ +           FG  VN+++         +LQ
Sbjct: 561  LLIMEDKDIERKKQLEDCEKKVTEAHYEL----------FGVKVNSET---------ELQ 601

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IE+ +R  GE+A+  LD+ M +    +LNE       N SK      L +     GL 
Sbjct: 602  LEIERTIRRDGETALTALDRKMIS----VLNE-------NSSKGVLTELLSE-----GLV 645

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K+   NC  LMT SGAKGS+VNF           LEGKRVP M+SGKTLPCF PWD A R
Sbjct: 646  KSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAAR 705

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK++YDHT
Sbjct: 706  AGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHT 765

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGS+VQF YGEDG+DVH+TSFI+KF+ +A N  +  E+L +         L  PD+
Sbjct: 766  VRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCS--------QLGEPDD 817

Query: 341  ------EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLS 180
                  +GLR K  + + E +                K  +   +K KD +NL+ LK+LS
Sbjct: 818  SDKILPDGLRSKAEQFIREEI----------------KKYQHQKIKPKDFLNLLKLKFLS 861

Query: 179  SIAQPGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            S+AQPGEPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I+T
Sbjct: 862  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRT 920


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  464 bits (1195), Expect = e-128
 Identities = 260/479 (54%), Positives = 321/479 (67%), Gaps = 6/479 (1%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            I+ ND + GVIDKAQF  YGL+HTVQELYG +TAG LLS  SRLFT+FLQ+HGFTCG+DD
Sbjct: 793  IYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDD 852

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  + DI R+++L+D +    EA+ +           FG  VN+++         +LQ
Sbjct: 853  LLIMEDKDIERKKQLEDCEKKVTEAHYEL----------FGVKVNSET---------ELQ 893

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IE+ +R  GE+A+  LD+ M +    +LNE       N SK      L +     GL 
Sbjct: 894  LEIERTIRRDGETALTALDRKMIS----VLNE-------NSSKGVLTELLSE-----GLV 937

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K+   NC  LMT SGAKGS+VNF           LEGKRVP M+SGKTLPCF PWD A R
Sbjct: 938  KSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAAR 997

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK++YDHT
Sbjct: 998  AGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHT 1057

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGS+VQF YGEDG+DVH+TSFI+KF+ +A N  +  E+L +         L  PD+
Sbjct: 1058 VRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCS--------QLGEPDD 1109

Query: 341  ------EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLS 180
                  +GLR K  + + E +                K  +   +K KD +NL+ LK+LS
Sbjct: 1110 SDKILPDGLRSKAEQFIREEI----------------KKYQHQKIKPKDFLNLLKLKFLS 1153

Query: 179  SIAQPGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            S+AQPGEPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I+T
Sbjct: 1154 SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRT 1212


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  464 bits (1194), Expect = e-128
 Identities = 260/479 (54%), Positives = 321/479 (67%), Gaps = 6/479 (1%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            I+ ND + GVIDKAQF  YGL+HTVQELYG +TAG LLS  SRLFT+FLQ+HGFTCG+DD
Sbjct: 501  IYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDD 560

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  + DI R+++L+D +    EA+ +           FG  VN+++   +      LQ
Sbjct: 561  LLIMEDKDIERKKQLEDCEKKVTEAHYEL----------FGVKVNSETAPTE------LQ 604

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IE+ +R  GE+A+  LD+ M +    +LNE       N SK      L +     GL 
Sbjct: 605  LEIERTIRRDGETALTALDRKMIS----VLNE-------NSSKGVLTELLSE-----GLV 648

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K+   NC  LMT SGAKGS+VNF           LEGKRVP M+SGKTLPCF PWD A R
Sbjct: 649  KSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAAR 708

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK++YDHT
Sbjct: 709  AGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHT 768

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGS+VQF YGEDG+DVH+TSFI+KF+ +A N  +  E+L +         L  PD+
Sbjct: 769  VRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCS--------QLGEPDD 820

Query: 341  ------EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLS 180
                  +GLR K  + + E +                K  +   +K KD +NL+ LK+LS
Sbjct: 821  SDKILPDGLRSKAEQFIREEI----------------KKYQHQKIKPKDFLNLLKLKFLS 864

Query: 179  SIAQPGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            S+AQPGEPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I+T
Sbjct: 865  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRT 923


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  464 bits (1194), Expect = e-128
 Identities = 260/479 (54%), Positives = 321/479 (67%), Gaps = 6/479 (1%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            I+ ND + GVIDKAQF  YGL+HTVQELYG +TAG LLS  SRLFT+FLQ+HGFTCG+DD
Sbjct: 793  IYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDD 852

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  + DI R+++L+D +    EA+ +           FG  VN+++   +      LQ
Sbjct: 853  LLIMEDKDIERKKQLEDCEKKVTEAHYEL----------FGVKVNSETAPTE------LQ 896

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IE+ +R  GE+A+  LD+ M +    +LNE       N SK      L +     GL 
Sbjct: 897  LEIERTIRRDGETALTALDRKMIS----VLNE-------NSSKGVLTELLSE-----GLV 940

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K+   NC  LMT SGAKGS+VNF           LEGKRVP M+SGKTLPCF PWD A R
Sbjct: 941  KSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAAR 1000

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK++YDHT
Sbjct: 1001 AGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHT 1060

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGS+VQF YGEDG+DVH+TSFI+KF+ +A N  +  E+L +         L  PD+
Sbjct: 1061 VRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCS--------QLGEPDD 1112

Query: 341  ------EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLS 180
                  +GLR K  + + E +                K  +   +K KD +NL+ LK+LS
Sbjct: 1113 SDKILPDGLRSKAEQFIREEI----------------KKYQHQKIKPKDFLNLLKLKFLS 1156

Query: 179  SIAQPGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            S+AQPGEPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I+T
Sbjct: 1157 SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRT 1215


>ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha
            curcas]
          Length = 1741

 Score =  458 bits (1178), Expect = e-126
 Identities = 254/473 (53%), Positives = 315/473 (66%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            I+ N+ + GVIDKAQFG+YGL+HTV EL+G +TAG LLS LSRLFT +LQ+HGFTCG+DD
Sbjct: 796  IYRNELVRGVIDKAQFGEYGLVHTVHELFGSNTAGVLLSALSRLFTAYLQMHGFTCGVDD 855

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  +ID  R++ L+  +   +  +  F   KDES       +  D +        +LQ
Sbjct: 856  LLIMESIDDERKKLLESCERSGEAVHRNFIGIKDES-------IEIDPV--------ELQ 900

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IE+ +R  G+SA+  LD+ M+N  +T            K+     NKL       GL 
Sbjct: 901  LNIERTIRSDGDSALSYLDRQMSNELNT------------KTSSGVINKLLSD----GLL 944

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K   +NC  LMT SGAKGS+VNF           LEGKRVP M+SGKTLPCF PWD A R
Sbjct: 945  KPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAAR 1004

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGG+I D FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK++YDHT
Sbjct: 1005 AGGYIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHT 1064

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGSVVQF YGEDGVDVH+TSFI+KF+ +A N  +  +     +CG+  +      +
Sbjct: 1065 VRDADGSVVQFYYGEDGVDVHRTSFIAKFEQLAMNQDMIYK-----QCGNQLVTFNSYVS 1119

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLSSIAQPG 162
            E L   L EK  + +   S M   + ++V          K +D+ NLM  K+L S+AQPG
Sbjct: 1120 E-LPKALSEKAAKFLDDFSLMGRVTSNLV----------KHEDLYNLMKQKFLLSLAQPG 1168

Query: 161  EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            EPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I+T
Sbjct: 1169 EPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAASNIKT 1221


>gb|KDP37347.1| hypothetical protein JCGZ_06801 [Jatropha curcas]
          Length = 1526

 Score =  458 bits (1178), Expect = e-126
 Identities = 254/473 (53%), Positives = 315/473 (66%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            I+ N+ + GVIDKAQFG+YGL+HTV EL+G +TAG LLS LSRLFT +LQ+HGFTCG+DD
Sbjct: 581  IYRNELVRGVIDKAQFGEYGLVHTVHELFGSNTAGVLLSALSRLFTAYLQMHGFTCGVDD 640

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  +ID  R++ L+  +   +  +  F   KDES       +  D +        +LQ
Sbjct: 641  LLIMESIDDERKKLLESCERSGEAVHRNFIGIKDES-------IEIDPV--------ELQ 685

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IE+ +R  G+SA+  LD+ M+N  +T            K+     NKL       GL 
Sbjct: 686  LNIERTIRSDGDSALSYLDRQMSNELNT------------KTSSGVINKLLSD----GLL 729

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K   +NC  LMT SGAKGS+VNF           LEGKRVP M+SGKTLPCF PWD A R
Sbjct: 730  KPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAAR 789

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGG+I D FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK++YDHT
Sbjct: 790  AGGYIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHT 849

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGSVVQF YGEDGVDVH+TSFI+KF+ +A N  +  +     +CG+  +      +
Sbjct: 850  VRDADGSVVQFYYGEDGVDVHRTSFIAKFEQLAMNQDMIYK-----QCGNQLVTFNSYVS 904

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLSSIAQPG 162
            E L   L EK  + +   S M   + ++V          K +D+ NLM  K+L S+AQPG
Sbjct: 905  E-LPKALSEKAAKFLDDFSLMGRVTSNLV----------KHEDLYNLMKQKFLLSLAQPG 953

Query: 161  EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            EPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I+T
Sbjct: 954  EPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAASNIKT 1006


>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
            vinifera]
          Length = 1691

 Score =  457 bits (1176), Expect = e-125
 Identities = 254/473 (53%), Positives = 315/473 (66%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            IH+N+ + GVIDKAQF KYGL+H VQELYG +TAG LLS LSRLFT+FLQ+HGFTCG+DD
Sbjct: 801  IHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDD 860

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  N DI R+ +L  ++ + +  + KF  +      N G+    D +        KLQ
Sbjct: 861  LLISPNYDIARKIELDKSENIGELVHCKFIGS------NHGK---IDPV--------KLQ 903

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              +EK +  +GE+AI  LD+ M N  + L ++VN  +                    GL 
Sbjct: 904  VEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLK-----------------GLV 946

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K FP+NC  LMT +GAKGS VNF           LEGKRVP M+SGKTLPCFPPWD A R
Sbjct: 947  KPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAAR 1006

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKV YD+T
Sbjct: 1007 AGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYT 1066

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRD+DGS+VQF YG+DGVDVH+TSFI++F+ +A N  V  E+       D K        
Sbjct: 1067 VRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQ----DGKF------- 1115

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLSSIAQPG 162
             G   KL +++      R + +      + ++       KQKD +NL+  KY+SS+AQPG
Sbjct: 1116 NGYIQKLPKEL------RKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPG 1169

Query: 161  EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            EPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I+T
Sbjct: 1170 EPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKT 1222


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  457 bits (1176), Expect = e-125
 Identities = 254/473 (53%), Positives = 315/473 (66%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            IH+N+ + GVIDKAQF KYGL+H VQELYG +TAG LLS LSRLFT+FLQ+HGFTCG+DD
Sbjct: 779  IHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDD 838

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  N DI R+ +L  ++ + +  + KF  +      N G+    D +        KLQ
Sbjct: 839  LLISPNYDIARKIELDKSENIGELVHCKFIGS------NHGK---IDPV--------KLQ 881

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              +EK +  +GE+AI  LD+ M N  + L ++VN  +                    GL 
Sbjct: 882  VEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLK-----------------GLV 924

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K FP+NC  LMT +GAKGS VNF           LEGKRVP M+SGKTLPCFPPWD A R
Sbjct: 925  KPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAAR 984

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKV YD+T
Sbjct: 985  AGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYT 1044

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRD+DGS+VQF YG+DGVDVH+TSFI++F+ +A N  V  E+       D K        
Sbjct: 1045 VRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQ----DGKF------- 1093

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLSSIAQPG 162
             G   KL +++      R + +      + ++       KQKD +NL+  KY+SS+AQPG
Sbjct: 1094 NGYIQKLPKEL------RKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPG 1147

Query: 161  EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            EPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I+T
Sbjct: 1148 EPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKT 1200


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score =  457 bits (1176), Expect = e-125
 Identities = 254/473 (53%), Positives = 315/473 (66%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            IH+N+ + GVIDKAQF KYGL+H VQELYG +TAG LLS LSRLFT+FLQ+HGFTCG+DD
Sbjct: 916  IHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDD 975

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  N DI R+ +L  ++ + +  + KF  +      N G+    D +        KLQ
Sbjct: 976  LLISPNYDIARKIELDKSENIGELVHCKFIGS------NHGK---IDPV--------KLQ 1018

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              +EK +  +GE+AI  LD+ M N  + L ++VN  +                    GL 
Sbjct: 1019 VEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLK-----------------GLV 1061

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K FP+NC  LMT +GAKGS VNF           LEGKRVP M+SGKTLPCFPPWD A R
Sbjct: 1062 KPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAAR 1121

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKV YD+T
Sbjct: 1122 AGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYT 1181

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRD+DGS+VQF YG+DGVDVH+TSFI++F+ +A N  V  E+       D K        
Sbjct: 1182 VRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNQEVVCEKFGQ----DGKF------- 1230

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLSSIAQPG 162
             G   KL +++      R + +      + ++       KQKD +NL+  KY+SS+AQPG
Sbjct: 1231 NGYIQKLPKEL------RKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPG 1284

Query: 161  EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            EPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM A+  I+T
Sbjct: 1285 EPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKT 1337


>ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Populus
            euphratica]
          Length = 1699

 Score =  456 bits (1172), Expect = e-125
 Identities = 258/489 (52%), Positives = 321/489 (65%), Gaps = 7/489 (1%)
 Frame = -1

Query: 1448 GKVN-------DPPFQIHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRL 1290
            GKVN       D    I  N  + GVIDKAQFG+YGL+HTVQEL+G   AG+LLS  SRL
Sbjct: 755  GKVNPKEKQLEDDKMIIFRNVLVQGVIDKAQFGEYGLVHTVQELFGAKAAGTLLSVFSRL 814

Query: 1289 FTLFLQLHGFTCGIDDLLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENV 1110
            FT +LQ+HGFTCG+DDLL+ +  D  R+++L++ +   ++ + KF   KDE       N+
Sbjct: 815  FTAYLQMHGFTCGVDDLLITKIKDDERKKQLENCEKCGEQIHRKFIGIKDE-------NI 867

Query: 1109 NADSILLDAGERRKLQDGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKD 930
              D +        +LQ  IEK +R  GESA+  LD+ MTN       E+NS     K+  
Sbjct: 868  KIDPL--------ELQSNIEKTIRSDGESALTYLDRQMTN-------ELNS-----KTSS 907

Query: 929  QSANKLKDKSEELGLSKAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMI 750
               N+L  +    GL K   +NC  LMT SGAKGS+VNF           LEGKRVP M+
Sbjct: 908  GVINELLSE----GLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMV 963

Query: 749  SGKTLPCFPPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 570
            SGKTLPCF PWD A RAGG+I D FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR
Sbjct: 964  SGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1023

Query: 569  CLVKSLECLKVNYDHTVRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLR 390
            CL+K+LECL++ YDHTVRDADGS+VQF YGEDGVDVH+T FI+KF+ +A+N  +  E+  
Sbjct: 1024 CLIKNLECLRIGYDHTVRDADGSIVQFYYGEDGVDVHQTGFIAKFEALAANREIIYEKSD 1083

Query: 389  NLECGDAKLMLRRPDNEGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDI 210
             L   +A +    P  E L+ K    +  +   +S +   + D       RS++L + D 
Sbjct: 1084 ELGTFNAYIS-ELP--EALKEKAEIFLRNIAKEQSSLHDYTKD-------RSSNLVEHDF 1133

Query: 209  MNLMMLKYLSSIAQPGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEIL 30
              L+  K+  S+AQPGEPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEIL
Sbjct: 1134 YKLLKQKFFLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1193

Query: 29   MRASEKIQT 3
            M AS  I+T
Sbjct: 1194 MTASADIKT 1202


>ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Gossypium
            raimondii] gi|763751831|gb|KJB19219.1| hypothetical
            protein B456_003G089300 [Gossypium raimondii]
          Length = 1674

 Score =  455 bits (1171), Expect = e-125
 Identities = 251/473 (53%), Positives = 316/473 (66%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            I++ND + GVIDKAQF  YGL+HTVQELYG +TAG LLS  SRLFT+FLQ+HGFTCG+DD
Sbjct: 784  IYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGFLLSVFSRLFTVFLQMHGFTCGVDD 843

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LL+  + DI R+++L++ +    EA+ +F   K          V+ +   ++      LQ
Sbjct: 844  LLIMNDKDIERKKQLEECEKKVTEAHYEFCAVK----------VDTEIAPIE------LQ 887

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IEK +R  GE+A+  LD+ M            S++  N S+      L +     GL 
Sbjct: 888  LKIEKTIRRDGEAALTALDRTMI-----------SVLNKNSSQGVLTELLSE-----GLV 931

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K   RNC  LMT +GAKGS+VNF           LEGKRVP M+SGKTLPCF PWD A R
Sbjct: 932  KPMGRNCISLMTTTGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAAR 991

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI+D FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK++YDHT
Sbjct: 992  AGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHT 1051

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGS+VQF YGEDG+DVH+TSF++KF+ +A N  V  E+L ++              
Sbjct: 1052 VRDADGSIVQFNYGEDGIDVHQTSFVTKFEALALNCDVMSEKLSSM-------------- 1097

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLSSIAQPG 162
                  LGE  +        ++  ++  +  K+ R   +K K+ + L+ LK+LSS+AQPG
Sbjct: 1098 ------LGEPYDSGKILPDDLRDKAVQFI--KDNRQQKIKTKNFLKLLKLKFLSSLAQPG 1149

Query: 161  EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            EPVGV+AAQSVGEPSTQMTLNTFH AG+ + NVTLGIPRLQEILM AS  I+T
Sbjct: 1150 EPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKT 1202


>ref|XP_008443105.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            rpa1 [Cucumis melo]
          Length = 1681

 Score =  454 bits (1168), Expect = e-125
 Identities = 256/481 (53%), Positives = 321/481 (66%)
 Frame = -1

Query: 1445 KVNDPPFQIHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLH 1266
            +++D    I +N+ + GVIDKAQFG YGL+HTVQELYG  TAG LLS +SRLFT+FLQ H
Sbjct: 779  RLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSSTAGLLLSVMSRLFTVFLQTH 838

Query: 1265 GFTCGIDDLLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLD 1086
            GFTCG+DDLLL   +D  R ++LQ  + + ++ +L+F   KD      GE ++  ++ L+
Sbjct: 839  GFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLEFLKVKD------GEKLDPMTLQLN 892

Query: 1085 AGERRKLQDGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKD 906
                      IEK +  +GE+A+  LD+ MT+     LNE          +  ++  LKD
Sbjct: 893  ----------IEKTISNNGEAALTSLDRKMTSQ----LNE----------RTGNSKVLKD 928

Query: 905  KSEELGLSKAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCF 726
               E GL K   +NC  LMT SGAKG   NF           LEGKRVP M+SGKTLPCF
Sbjct: 929  LLSE-GLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCF 987

Query: 725  PPWDPALRAGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLEC 546
            PPWD A RAGGFI D FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE 
Sbjct: 988  PPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEA 1047

Query: 545  LKVNYDHTVRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAK 366
            LK+ YDHTVRDADGSV+QF YGEDGVDVHKT+FI+KF+ +A+N  +  ++  + + G   
Sbjct: 1048 LKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYQKSHH-QLGKYN 1106

Query: 365  LMLRRPDNEGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKY 186
            + +       L   L EK   +  S S            K+K    + ++D + L+  KY
Sbjct: 1107 VFINE-----LPSALREKAEFIYNSLS------------KDKVPGLVVKEDFIRLLENKY 1149

Query: 185  LSSIAQPGEPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQ 6
            LSS+AQPGEPVGV+AAQS+GEPSTQMTLNTFHHAG+ + NVTLGIPRLQEILM AS+ I+
Sbjct: 1150 LSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIK 1209

Query: 5    T 3
            T
Sbjct: 1210 T 1210


>ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X2
            [Eucalyptus grandis]
          Length = 1669

 Score =  453 bits (1166), Expect = e-124
 Identities = 252/473 (53%), Positives = 310/473 (65%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            I +N  + GVIDKAQFG YGL+HT QELYG + AG LLS  SRLFT FLQLHGFTCG+DD
Sbjct: 786  IFKNYLICGVIDKAQFGDYGLVHTFQELYGSNAAGILLSAFSRLFTAFLQLHGFTCGVDD 845

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LLL ++ID  R+++L++ +   +E + +     D                +D  E   LQ
Sbjct: 846  LLLSKDIDEKRQQQLEECENCGEEVHCEVVGVND---------------FIDPAE---LQ 887

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IE+ +R +G+SA+  LD+ M +     LNE++S             K++      GL 
Sbjct: 888  LKIEEVIRSNGDSALTNLDRRMISR----LNELSS------------KKIEKNLLSEGLF 931

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K   +NC  LMT SGAKG   NF           LEG+RVP M+SGKTLPCFPPWD A R
Sbjct: 932  KPTGKNCISLMTTSGAKGGTANFQQISSHLGQQELEGRRVPRMVSGKTLPCFPPWDWASR 991

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI D FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVK+LECLKV+YDHT
Sbjct: 992  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLECLKVSYDHT 1051

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGS+VQF YGEDG+DVHKTSF++KFD + +N  + + +         +L       
Sbjct: 1052 VRDADGSIVQFYYGEDGIDVHKTSFVAKFDALLANHDIMKAKY------STELRKSNSYI 1105

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLSSIAQPG 162
              L   L +K N+ +C R      +L + R    R+  LK +D +  +  KY SS+AQPG
Sbjct: 1106 TDLPEALKDKANKFICDR------NLSVPRL--ARNEILKPEDFVKSVEQKYFSSLAQPG 1157

Query: 161  EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            EPVG++AAQSVGEPSTQMTLNTFHHAG+ + NVTLGIPRLQEILM AS  I+T
Sbjct: 1158 EPVGIVAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASTDIKT 1210


>ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
            [Eucalyptus grandis]
          Length = 1669

 Score =  453 bits (1166), Expect = e-124
 Identities = 252/473 (53%), Positives = 310/473 (65%)
 Frame = -1

Query: 1421 IHENDFLNGVIDKAQFGKYGLIHTVQELYGPDTAGSLLSGLSRLFTLFLQLHGFTCGIDD 1242
            I +N  + GVIDKAQFG YGL+HT QELYG + AG LLS  SRLFT FLQLHGFTCG+DD
Sbjct: 786  IFKNYLICGVIDKAQFGDYGLVHTFQELYGSNAAGILLSAFSRLFTAFLQLHGFTCGVDD 845

Query: 1241 LLLKRNIDIMRRRKLQDAKLVDKEAYLKFTNTKDESTNNFGENVNADSILLDAGERRKLQ 1062
            LLL ++ID  R+++L++ +   +E + +     D                +D  E   LQ
Sbjct: 846  LLLSKDIDEKRQQQLEECENCGEEVHCEVVGVND---------------FIDPAE---LQ 887

Query: 1061 DGIEKAVRVHGESAIKLLDKYMTNAAHTLLNEVNSIVFSNKSKDQSANKLKDKSEELGLS 882
              IE+ +R +G+SA+  LD+ M +     LNE++S             K++      GL 
Sbjct: 888  LKIEEVIRSNGDSALTNLDRRMISR----LNELSS------------KKIEKNLLSEGLF 931

Query: 881  KAFPRNCFFLMTVSGAKGSQVNFXXXXXXXXXXXLEGKRVPLMISGKTLPCFPPWDPALR 702
            K   +NC  LMT SGAKG   NF           LEG+RVP M+SGKTLPCFPPWD A R
Sbjct: 932  KPTGKNCISLMTTSGAKGGTANFQQISSHLGQQELEGRRVPRMVSGKTLPCFPPWDWASR 991

Query: 701  AGGFITDCFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVNYDHT 522
            AGGFI D FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVK+LECLKV+YDHT
Sbjct: 992  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLECLKVSYDHT 1051

Query: 521  VRDADGSVVQFCYGEDGVDVHKTSFISKFDTIASNPRVFRERLRNLECGDAKLMLRRPDN 342
            VRDADGS+VQF YGEDG+DVHKTSF++KFD + +N  + + +         +L       
Sbjct: 1052 VRDADGSIVQFYYGEDGIDVHKTSFVAKFDALLANHDIMKAKY------STELRKSNSYI 1105

Query: 341  EGLRMKLGEKVNEVVCSRSQMQHTSLDIVRQKNKRSTDLKQKDIMNLMMLKYLSSIAQPG 162
              L   L +K N+ +C R      +L + R    R+  LK +D +  +  KY SS+AQPG
Sbjct: 1106 TDLPEALKDKANKFICDR------NLSVPRL--ARNEILKPEDFVKSVEQKYFSSLAQPG 1157

Query: 161  EPVGVIAAQSVGEPSTQMTLNTFHHAGQKDSNVTLGIPRLQEILMRASEKIQT 3
            EPVG++AAQSVGEPSTQMTLNTFHHAG+ + NVTLGIPRLQEILM AS  I+T
Sbjct: 1158 EPVGIVAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASTDIKT 1210