BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00001635
         (1809 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001430021.1| replicase [Coleus vein necrosis virus] gi|15...   454   e-124
ref|YP_003324581.1| replicase [Butterbur mosaic virus] gi|269230...   446   e-122
gb|AIZ76619.1| replicase polyprotein [Elderberry carlavirus B]        435   e-119
emb|CAH55773.1| replicase [Poplar mosaic virus (ATCC PV257)]          426   e-116
ref|NP_958171.1| replicase [Poplar mosaic virus] gi|40737838|gb|...   423   e-115
ref|YP_009126731.1| RNA-dependent RNA polymerase [Alfalfa latent...   421   e-115
gb|AIZ76613.1| replicase polyprotein [Elderberry carlavirus A]        421   e-114
gb|AIZ76625.1| replicase polyprotein [Elderberry carlavirus C]        417   e-113
ref|YP_004936159.1| unnamed protein product [Garlic common laten...   417   e-113
ref|YP_009158846.1| replicase [Pea streak virus] gi|846453631|gb...   417   e-113
gb|AGG13282.1| Replicase [Garlic common latent virus]                 417   e-113
ref|YP_006522434.1| RNA-dependent RNA polymerase [Potato virus H...   414   e-112
gb|AIZ76637.1| replicase polyprotein [Elderberry carlavirus E]        413   e-112
ref|YP_002302557.1| RdRp polyprotein replicase [Potato latent vi...   412   e-112
gb|AEI55831.1| RNA dependent RNA polymerase [Potato virus H]          410   e-111
gb|AIZ76631.1| replicase polyprotein [Elderberry carlavirus D]        408   e-111
gb|AGS13082.1| RdRP [Cowpea mild mottle virus]                        405   e-110
gb|AHG23050.1| replication polyprotein [Cowpea mild mottle virus]     404   e-109
gb|AHG23045.1| replication polyprotein [Cowpea mild mottle virus]     404   e-109
gb|AGS13094.1| RdRP [Cowpea mild mottle virus]                        404   e-109

>ref|YP_001430021.1| replicase [Coleus vein necrosis virus] gi|155007628|gb|ABS89245.1|
            replicase [Coleus vein necrosis virus]
          Length = 1977

 Score =  454 bits (1168), Expect = e-124
 Identities = 237/499 (47%), Positives = 324/499 (64%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALT+RSPLEEVL++F+++EQSLIS TA++ Y  LE   F FFN  ++A++KE+L+ +GI
Sbjct: 1    MALTFRSPLEEVLTNFSSTEQSLISKTAINHYSNLESSLFNFFNLNVDAYSKEKLINSGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFSGVPHSHPVCKTLEN+ LY VLP  ++S F  VGIK+ K+ FL+QR   L++V +
Sbjct: 61   YLSPFSGVPHSHPVCKTLENHILYRVLPSLIDSTFTFVGIKEAKLQFLRQRHSHLNLVQL 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS DRLRY ++F    S  +          +SD+LR+L+P CI  K R+ FLHDE
Sbjct: 121  INRYVTSADRLRYPSEFHITPSKAIEVCEKWGRFGKSDSLRELLPACITHKPRALFLHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW  +ELK FL+A KP++LLGTLV+PPELL G  ESLNPWCY + +  K   + PDG 
Sbjct: 181  LHYWNLKELKVFLLAVKPEKLLGTLVFPPELLQGVHESLNPWCYTFEVDDKWLHYYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             +E Y Q  +SGYLL+ +KI L DGS YCVD++ S ++HH++A+T GDA+ +   +F+GF
Sbjct: 241  KTEGYTQPRNSGYLLRLSKIHLSDGSTYCVDLVYSCYSHHIIALTLGDAVRKPFNAFSGF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            +ATT  GL  L       C+ +   V   IY+YLRTLQKPD+ SA+AKL Q++  PT++Q
Sbjct: 301  DATTFQGLKKLDLRGIGPCLPISFSVVNRIYRYLRTLQKPDLASAMAKLSQILPEPTSFQ 360

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            IKF+REFS +VIK   C  LF  + L+ +K   A+ LP+ L   V A +  SL  F+  M
Sbjct: 361  IKFIREFSELVIKTETCSNLFQNNVLLDIKNFFASQLPKRLAATVDAYKISSLDEFLEKM 420

Query: 459  QPFGFTIALQELGSIYDDFFLGCDDWVSDESPEKVLASLEGLYEQARVGTQSGVSTSYGP 280
            +P+ FTI L E  ++ D  F    D    E    ++A LE           +  +T Y  
Sbjct: 421  EPYSFTIKLVEATALMDIIFNFDRDIEGFEHEVDIVAELEAFANPKNPHAHNAKTTPYFC 480

Query: 279  FGCCEVLEVRPQAIVGCLL 223
               C+ +E   Q +   +L
Sbjct: 481  EPYCDAVEFCVQKMAKLVL 499


>ref|YP_003324581.1| replicase [Butterbur mosaic virus] gi|269230978|dbj|BAI49692.1|
            replicase [Butterbur mosaic virus]
          Length = 1997

 Score =  446 bits (1146), Expect = e-122
 Identities = 225/452 (49%), Positives = 306/452 (67%), Gaps = 7/452 (1%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            M+LTYRSP+EE L+SFT++EQSLI+ +AV  Y  +E+  F  FNYA+ A+AKE+L+ AGI
Sbjct: 1    MSLTYRSPIEEALTSFTSAEQSLIADSAVKHYSDIERAEFKLFNYAIPAYAKEKLLTAGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFSG+PHSHPVCKTLENY LY  LP  +++ FY VGIK  K+NFLKQR   L M+N+
Sbjct: 61   YLSPFSGIPHSHPVCKTLENYILYKCLPPLLDNTFYFVGIKDAKLNFLKQRHKDLGMINL 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NR+VTS D LRY   FV   S  +  + + R    SDTLRDL+P+CI+ KAR  FLHDE
Sbjct: 121  INRFVTSLDCLRYPNAFVNTQSQCINSAPNTRFTDSSDTLRDLLPNCIKLKARKLFLHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW+ +EL+ FL A KP+ ++GT+VYPPELL+G   SLNPWCY Y I G +  ++PDG 
Sbjct: 181  LHYWSIKELRVFLSALKPEVVIGTVVYPPELLVGSKSSLNPWCYTYEIKGNNLIYSPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             SESY Q ++ GYLL+  KI L  G  YCVD+++SKF+HH++AITRGD   +R  +F  F
Sbjct: 241  MSESYEQPVNGGYLLKTAKIHLPTGETYCVDLLASKFSHHLIAITRGDRKTKRWANFNNF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            +ATT TGL   + G    C+ +P  +   +Y+YLR+L +PDVQSA++KL QL+  PTA+Q
Sbjct: 301  DATTHTGLVRTSRGLGP-CLAIPYPIVNRLYRYLRSLLRPDVQSAMSKLSQLMPEPTAFQ 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            IKF +EFS +VIK +  + +  A      K  L  + P       +  +  +L  FV++M
Sbjct: 360  IKFTQEFSQLVIKTNPLNSMIDAKCFDAFKNFLLKSFPAWFAKMFSVNKAFALDDFVSSM 419

Query: 459  QPFGFTIALQEL----GSIYD---DFFLGCDD 385
            + F F++ L  L    G  +D   D+F  C++
Sbjct: 420  EAFHFSVELDILRDDHGFSFDFTTDYFQSCEE 451


>gb|AIZ76619.1| replicase polyprotein [Elderberry carlavirus B]
          Length = 1990

 Score =  435 bits (1118), Expect = e-119
 Identities = 238/511 (46%), Positives = 326/511 (63%), Gaps = 13/511 (2%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MAL+YRSPLE+ L+SFT++EQS I+ TA++RY+ LE ENF  FNYAL   +KE+L + GI
Sbjct: 1    MALSYRSPLEDALTSFTSTEQSTIAVTAINRYRELETENFNLFNYALSPTSKEKLSRCGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS +PHSHP CKTLENY LY VLP Y++  F+ VGIK+ K+ FLK+R P L++++ 
Sbjct: 61   YLSPFSAMPHSHPTCKTLENYLLYKVLPSYLDPSFFFVGIKKQKLEFLKKRDPKLNLISC 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NR+VTS+D+LRYG++FV    G+   S     C  S T   L+P  I+ KARS FLHDE
Sbjct: 121  INRFVTSKDKLRYGSEFV-IYDGIRGNSDPNARCSYSQTTATLIPEVIKGKARSLFLHDE 179

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW   +L  FL A KPK LLGTLV+PPELLIG  +SLN WCY++ IH  +  F PDG 
Sbjct: 180  LHYWKVGDLIDFLTATKPKVLLGTLVHPPELLIGAKQSLNRWCYEFDIHEDELLFYPDGV 239

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
              E Y Q ++ GYLL+ ++I L+DGS+YCVD++ SKFAHH+VAIT G++   +KR F+ F
Sbjct: 240  REEGYNQPLNGGYLLKTSRIHLDDGSIYCVDILCSKFAHHLVAITPGNSATPKKRCFSNF 299

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTI--SIYKYLRTLQKPDVQSAVAKLGQLVRHPTA 646
            EAT+  G+       + LC  LP D ++   +Y+YLRTLQKPDVQSA+AKL Q+V  PT 
Sbjct: 300  EATSSRGM--ALHYVDGLC-ALPIDPSVISKVYRYLRTLQKPDVQSAMAKLSQIVPEPTG 356

Query: 645  YQIKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVN 466
            ++IKF++EFS  VI+ S+   L   + +  LK    + LP  L   V  ++  SL  F+ 
Sbjct: 357  FEIKFIQEFSKFVIETSNHKSLINVELIKTLKLTGFSLLPDFLTKHVGIVKEASLDEFIG 416

Query: 465  TMQPFGFTIALQEL-------GSIYDDFFLGCDDWVSDESPEKVLASLE-GLYEQARVGT 310
             +    F + L EL       G++     LG DD  +  +P  V   L  G+  +     
Sbjct: 417  NLCELSFMVELSELRRDTILIGALKG--ILGFDD--ASRAPPAVPCKLNYGILHK----- 467

Query: 309  QSGVSTSYGP---FGCCEVLEVRPQAIVGCL 226
            +  +  SY P    GC  +LE+    ++G +
Sbjct: 468  RESMPYSYAPDRTRGCAYLLEIPDCRVLGVM 498


>emb|CAH55773.1| replicase [Poplar mosaic virus (ATCC PV257)]
          Length = 1992

 Score =  426 bits (1094), Expect = e-116
 Identities = 220/439 (50%), Positives = 290/439 (66%), Gaps = 1/439 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSP+EE+L+SFTT EQSL+SATA+   +  E  N+  F+YAL   +KE+LV++GI
Sbjct: 1    MALTYRSPIEEMLNSFTTIEQSLVSATALQGIRKEENNNYENFSYALPVKSKEKLVRSGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSP+S +PHSHPVCKTLENY LY VLP Y++S FY VGIK  K++F+KQR  +LSM   
Sbjct: 61   YLSPYSAMPHSHPVCKTLENYMLYRVLPGYLDSSFYFVGIKNSKLDFIKQRNSTLSMTIA 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS D+LRYG++F C  S      ++    + SDTL  LVP  I  KAR  F+HDE
Sbjct: 121  INRYVTSADKLRYGSEFTCVRSKQSGSLLAKHGGFSSDTLSTLVPSLISVKARKLFIHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW+K +L+ FL   KP+ +L TLVYPPELL G   SLNPWCY++ I+     F PDG 
Sbjct: 181  LHYWSKNDLRCFLQVVKPEMVLATLVYPPELLAGSKISLNPWCYEFDIYKDRLLFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             SE Y Q +  GYLL+ ++I+L +G VYCVD+I SKFAHHV+AITRGD +V   R+F  F
Sbjct: 241  RSEGYNQPVGGGYLLKTSRIVLPNGDVYCVDLIHSKFAHHVIAITRGDRVVPCTRTFGDF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            +A +   L  +  G  + C  +       IY+YL+TL KPD QSA+AKLGQ+V  PT ++
Sbjct: 301  DAISVESLVGVC-GNVQACYPISYSTVSKIYRYLQTLVKPDGQSAMAKLGQIVAEPTGHE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            +KFV++FS  VI       +   D    +   LA  LP       AA R V+L  F++T+
Sbjct: 360  VKFVQDFSRFVIGTHSISSIIMPDYKKKIAGFLAGLLPHFASRMFAAYREVTLDNFISTL 419

Query: 459  QPFGFTIALQELG-SIYDD 406
            +PF F   L  L  S++D+
Sbjct: 420  RPFSFIQPLSSLDESLWDE 438


>ref|NP_958171.1| replicase [Poplar mosaic virus] gi|40737838|gb|AAR89414.1| replicase
            [Poplar mosaic virus]
          Length = 1992

 Score =  423 bits (1088), Expect = e-115
 Identities = 219/439 (49%), Positives = 290/439 (66%), Gaps = 1/439 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSP+EE+L+SFTT EQSL+SATA+   +  E  N+  F+YAL   +KE+LV++GI
Sbjct: 1    MALTYRSPIEEMLNSFTTIEQSLVSATALQGIRKEENNNYENFSYALPVKSKEKLVRSGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSP+S +PHSHPVCKTLENY LY VLP Y++S FY VGIK  K++F+KQR  +LSM   
Sbjct: 61   YLSPYSAMPHSHPVCKTLENYMLYRVLPGYLDSSFYFVGIKNSKLDFIKQRNSTLSMTIA 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS D+LRYG++F C  S      ++    + S+TL  LVP  I  KAR  F+HDE
Sbjct: 121  INRYVTSADKLRYGSEFTCVRSKQSGGLLAKHGGFSSETLSTLVPSLISVKARKLFIHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW+K +L+ FL   KP+ +L TLVYPPELL G   SLNPWCY++ I+     F PDG 
Sbjct: 181  LHYWSKNDLRCFLQVVKPEMVLATLVYPPELLAGSKISLNPWCYEFDIYKDRLLFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             SE Y Q +  GYLL+ ++I+L +G VYCVD+I SKFAHHV+AITRGD +V   R+F  F
Sbjct: 241  RSEGYNQPVGGGYLLKTSRIVLPNGDVYCVDLIHSKFAHHVIAITRGDRVVPCTRTFGDF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            +A +   L  +  G  + C  +       IY+YL+TL KPD QSA+AKLGQ+V  PT ++
Sbjct: 301  DAISVESLVGVC-GNVQACYPISYSTVSKIYRYLQTLVKPDGQSAMAKLGQIVAEPTGHE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            +KFV++FS  VI       +   D    +   LA  LP       AA R V+L  F++T+
Sbjct: 360  VKFVQDFSRFVIGTHSISSIIMPDYKKKIAGFLAGLLPHFASRMFAAYREVTLDNFISTL 419

Query: 459  QPFGFTIALQELG-SIYDD 406
            +PF F   L  L  S++D+
Sbjct: 420  RPFSFIQPLSSLDESLWDE 438


>ref|YP_009126731.1| RNA-dependent RNA polymerase [Alfalfa latent virus]
            gi|760249767|gb|AJP16553.1| RNA-dependent RNA polymerase
            [Alfalfa latent virus]
          Length = 1908

 Score =  421 bits (1083), Expect = e-115
 Identities = 223/512 (43%), Positives = 313/512 (61%), Gaps = 1/512 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSPLEEVL SF++SEQSLI+  A+   K +E+EN   FNYAL   AK++L+  G+
Sbjct: 1    MALTYRSPLEEVLGSFSSSEQSLIAIPAIANLKGVEQENHSLFNYALSPIAKQKLISNGL 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS +PHSHPVCKTLENY LY VLP Y++  FY VGIK+ K+NFL+ R   L++  V
Sbjct: 61   YLSPFSAMPHSHPVCKTLENYLLYKVLPNYLDHRFYFVGIKESKINFLRSREKKLNLCEV 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS D+ RYG++F    +      + ++       L DL+P     +    FLHDE
Sbjct: 121  VNRYVTSADKARYGSEFTIRRTLDSDNEIKSKYGRLPPNLVDLIPQFSSKQGLHLFLHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYWT+ +L+ FL AC P ++L T+V PPELLIG  ES+N WCY + +   +  F PDG 
Sbjct: 181  LHYWTRADLRLFLTACNPIKMLATVVIPPELLIGATESMNKWCYTFNVEDDELFFFPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             +E Y QR D   LL  +KI+L+DG+ YCVD++ SKF+HH++AITRGDAIV + R+F+ F
Sbjct: 241  TTEGYSQRADCADLLTLSKIILDDGTTYCVDILCSKFSHHLIAITRGDAIVPKTRTFSNF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            EA    G+ +L EG N  C+ +       I +YL TL KPDVQSA+AKLGQ+V+ P+A++
Sbjct: 301  EAVGTKGIADLMEG-NVQCLPISYTTISKIERYLMTLNKPDVQSAIAKLGQIVQEPSAFE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            IKFVRE++A+ I     + L   D+   +K      LP++   R   +  V+L  F + +
Sbjct: 360  IKFVREYAALHISKRGLNSLILRDNWARVKAEFLKLLPKAFYGRFDTILKVALEDFESNL 419

Query: 459  QPFGFTIALQELGSIYDDFFLGCDDWVSDESPEKVLASLEGLYEQ-ARVGTQSGVSTSYG 283
             P  F + L+E GS  +      D ++       V A + GL E    +      S+ Y 
Sbjct: 420  APLSFRVRLEEYGS--ESLTNRLDSFIYRTG--GVAAVVNGLIELFGPINKSDRKSSPYS 475

Query: 282  PFGCCEVLEVRPQAIVGCLLWLLVKSHCFYSL 187
             F C E+  V    +   ++ +L +S+   +L
Sbjct: 476  DFYCAELFVVNSGTLRRSIIDMLKRSYSHNAL 507


>gb|AIZ76613.1| replicase polyprotein [Elderberry carlavirus A]
          Length = 1995

 Score =  421 bits (1082), Expect = e-114
 Identities = 236/502 (47%), Positives = 320/502 (63%), Gaps = 7/502 (1%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MAL+YRSPLE+VL+SFT++EQS I+ TAV+RY+ LE E+F  FNYAL   AKE+L +AGI
Sbjct: 1    MALSYRSPLEDVLTSFTSTEQSTIAVTAVNRYRELELEHFNLFNYALSPVAKEKLSKAGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS +PHSHP CKTLEN+ LY VLP Y++S F+ VGIK+ K++FLK R  SL +++ 
Sbjct: 61   YLSPFSAMPHSHPTCKTLENFLLYKVLPNYLDSSFFFVGIKKQKLDFLKSRNSSLGLISC 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NR+VTS+D++RY  DFV     +   S   + C+ S T   L+P  I +KARS FLHDE
Sbjct: 121  VNRFVTSKDKMRYSNDFVRYEGHLAHNSSKIKDCF-SATTGTLIPKVIENKARSLFLHDE 179

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW   +L  FL A KPK LLGTLV+PPELL+G  +SLN WCY + + G D  + PDG 
Sbjct: 180  LHYWKPGDLIDFLTAVKPKVLLGTLVHPPELLLGATQSLNRWCYDFEVCGDDLLYFPDGV 239

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
              E Y+Q  + GYLL+ N+I+L+DG+ YCVDV+ SKF+HH+++IT+GDA+  + R F+ F
Sbjct: 240  REEGYVQPRNGGYLLRTNRIILDDGATYCVDVLCSKFSHHLISITQGDAVTPKTRCFSNF 299

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTI--SIYKYLRTLQKPDVQSAVAKLGQLVRHPTA 646
            EAT+  GL       + LC  LP   TI   +Y+YLRTLQKPDVQSA+AKL Q+V  PT 
Sbjct: 300  EATSSKGL--ALHYRDGLC-ALPISHTIISRVYRYLRTLQKPDVQSAMAKLSQIVPEPTG 356

Query: 645  YQIKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVN 466
            ++IKF++EFS  VI   +   L   + +  LK    + LP  L   V  ++  SL  F+ 
Sbjct: 357  FEIKFIQEFSKFVISTHNHSSLINVELIKTLKIAGYSLLPDFLGKHVKVMQESSLDEFIG 416

Query: 465  TMQPFGFTIALQELGSIYDDFFLGC--DDWVSDESPEKVLAS---LEGLYEQARVGTQSG 301
             +    F + L EL    D   LG   +    DE+   + A+   L     Q RV +   
Sbjct: 417  NLCGLSFIVELVELRR--DSIILGAIKNALGFDEATRALPATPCKLNICILQGRVPSPYN 474

Query: 300  VSTSYGPFGCCEVLEVRPQAIV 235
            ++   G   C  +LE+ P+  V
Sbjct: 475  LNMR-GEAQCALLLEITPKTAV 495


>gb|AIZ76625.1| replicase polyprotein [Elderberry carlavirus C]
          Length = 2005

 Score =  417 bits (1072), Expect = e-113
 Identities = 237/554 (42%), Positives = 329/554 (59%), Gaps = 16/554 (2%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSP+EE++ +F  + QS IS+ A + Y+ +E+ +F  FNYAL A AKERL +AGI
Sbjct: 1    MALTYRSPMEEIVGAFEPAVQSAISSVAANAYREMEEHDFQLFNYALPAIAKERLTKAGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQR-----CPSL 1375
            YLSPFS VPHSHPVCKTLENY LY VLP Y+++ F  VGIK  K++ LK+R       + 
Sbjct: 61   YLSPFSSVPHSHPVCKTLENYLLYKVLPSYIDNRFSFVGIKDFKLSVLKKRNEKKGVKNG 120

Query: 1374 SMVNVLNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSF 1195
            +M+ V+NRYVTS D+ RYG++FV A S   P          S  L+DL+P  ++  A++ 
Sbjct: 121  NMIEVINRYVTSADKTRYGSEFVVASSKYEPNLQRHAGLCTSAPLKDLIPAVLKRNAKNI 180

Query: 1194 FLHDELHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEF 1015
            FLHDE+HYW+  +L  FL   +P+ +L TLVYPPELL+G P SL+ WCY Y I G+   F
Sbjct: 181  FLHDEIHYWSAADLSTFLEVVEPENMLCTLVYPPELLMGSPTSLHKWCYSYEIKGQTLLF 240

Query: 1014 APDGEYSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKR 835
             PDG  SE Y Q +  G LL    I L++G  YCVDVI SKFAHH+V+ITRG AI ++ R
Sbjct: 241  YPDGVRSEGYEQPLSGGRLLLTKHIKLKNGVHYCVDVICSKFAHHLVSITRGVAITKKYR 300

Query: 834  SFAGFEATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRH 655
            SF  F+A T  GL+ ++ G    C  +  ++   +Y+YLRTL+KPDVQSA+AKLGQL+  
Sbjct: 301  SFGPFDAVTAVGLNKISRGVGN-CFPISFEIVSRVYRYLRTLKKPDVQSAMAKLGQLLHE 359

Query: 654  PTAYQIKFVREFSAMVIKHSDCDKLFGADSL-VGLKKMLAAALPRSLVCRVAALRNVSLG 478
            P+  +IKF+ EF+ +VIK    +    ADS  + L +ML    P     +  A + V+L 
Sbjct: 360  PSGAEIKFLEEFAKLVIKTGTINTCIDADSARLFLGRMLNCG-PSVFAKQFGAAKEVALD 418

Query: 477  TFVNTMQPFGFTIALQELGSIYDDFFLGCDDWVSDESPEKVLASLEGLY----------E 328
             FV +++P+ FTI   EL +    +F   +DW    + +   A  +G+Y           
Sbjct: 419  AFVASLEPYSFTIETVELSNTAIGYFEILNDWGCAATIDPCRALEDGMYLPKDYTICRSR 478

Query: 327  QARVGTQSGVSTSYGPFGCCEVLEVRPQAIVGCLLWLLVKSHCFYSLGRVNRTYLEDYIG 148
               VG   G +          +L +  Q IV  +  +L KSH   S   ++  YL  +I 
Sbjct: 479  APYVGVLDGANRERR-----TLLAIEEQTIVRGIATILHKSHSGGSCAGISAGYLIRWIT 533

Query: 147  VVFKRTFIGAACLV 106
             + KR  I A  ++
Sbjct: 534  SLLKRVNILAKAIL 547


>ref|YP_004936159.1| unnamed protein product [Garlic common latent virus]
            gi|359471926|gb|AEV51822.1| replicase [Garlic common
            latent virus]
          Length = 1951

 Score =  417 bits (1072), Expect = e-113
 Identities = 228/482 (47%), Positives = 301/482 (62%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSPLEEVL+SF+ SEQSLI+  A+  Y+ LE++ F FFNY +  +AKE+L+ AG+
Sbjct: 1    MALTYRSPLEEVLTSFSASEQSLIAEPAITSYRGLERDLFHFFNYNVGPYAKEKLIGAGV 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFSGVPHSHPVCKTLEN+ LY VLP  +++ F  VGIK+ K+NFL+ R  +LSMV +
Sbjct: 61   YLSPFSGVPHSHPVCKTLENHLLYRVLPSILDNSFLFVGIKESKLNFLRARHQNLSMVEL 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS DR RY  DF  +I+     +      +    LR L+PHCI  K R  FLHDE
Sbjct: 121  VNRYVTSADRTRYPNDFHLSITAEQCFNRYDGFKHLGPGLRKLLPHCITVKPRRLFLHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW +R+L  FL A KP+++LGT+VYPPELL G   SLN WCY + + G D  F PDG 
Sbjct: 181  LHYWCERDLVTFLSAVKPEKVLGTVVYPPELLKGVKFSLNKWCYDFDVEGDDLIFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             +ESY Q +   + L+   + L DGSVY +DV+ S F HH+++IT G+A+     SF+ F
Sbjct: 241  RTESYTQPLSGCFYLKVGTLKLLDGSVYHIDVVHSTFCHHLISITAGEAVRAPTNSFSNF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            +ATTC GL N+A  +   CI +P  V   +Y+YLRTLQKPD+QSA+AKL Q++  PT YQ
Sbjct: 301  DATTCRGLPNIAFRSLGPCIAVPYPVISRVYRYLRTLQKPDLQSAMAKLSQIMPEPTGYQ 360

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            IKF+ EFS MVI        F        K  L    P+ +  R    R  SL  FV  M
Sbjct: 361  IKFMTEFSKMVIDTPVGASFFQVAIFEKFKGFLTTFFPKYVAARFDVARIRSLDEFVEHM 420

Query: 459  QPFGFTI-ALQELGSIYDDFFLGCDDWVSDESPEKVLASLEGLYEQARVGTQSGVSTSYG 283
             P+ F I A+     ++   F   ++   DE  + + A LE  +     G + G + + G
Sbjct: 421  CPYTFKIKAVVHDMRLHQLLFPRDEEMPRDEDFDTIRA-LEMQWGGGANGERIGAAYTVG 479

Query: 282  PF 277
            PF
Sbjct: 480  PF 481


>ref|YP_009158846.1| replicase [Pea streak virus] gi|846453631|gb|AKN20456.1| replicase
            [Pea streak virus]
          Length = 1908

 Score =  417 bits (1071), Expect = e-113
 Identities = 221/516 (42%), Positives = 314/516 (60%), Gaps = 1/516 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSPLEEVL SF++SEQSLI+  A+   K +E++N   FNYAL   AK++L+  G+
Sbjct: 1    MALTYRSPLEEVLGSFSSSEQSLIAIPAIANLKGVEQDNHNLFNYALSPMAKQKLISNGL 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS +PHSHPVCKTLENY LY VLP Y++  FY VGIK+ K+NFL+ R   L++  V
Sbjct: 61   YLSPFSAMPHSHPVCKTLENYLLYKVLPNYIDHRFYFVGIKESKINFLRSREKKLNLCEV 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS D+ RYG++F    +    + + ++       L DL+P     +    FLHDE
Sbjct: 121  VNRYVTSADKARYGSEFTIRRTLESDKEIKSKYGRLPPNLVDLIPQFSSKQGLHLFLHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW++ +L+ FL AC P ++L T+V PPELLIG  ES+N WCY + I   +  F PDG 
Sbjct: 181  LHYWSRADLRLFLTACNPIKMLATVVIPPELLIGATESMNKWCYTFNIEDGEMFFFPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             +E Y QR D   LL   KI+L+DG+ YCVD++ SKF+HH++AITRGDAIV + R+F+ F
Sbjct: 241  TTEGYSQRADCADLLNLAKIILDDGTTYCVDILCSKFSHHLIAITRGDAIVPKTRTFSNF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            EA    G+ +L EG  + C+ +       I +YL TL KPDVQSA+AKLGQ+V+ P+A++
Sbjct: 301  EAVGTKGIADLMEGDIQ-CLPISYTTISKIERYLMTLNKPDVQSAIAKLGQIVQEPSAFE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            IKFVRE++A+ I     + L   D+   +K      LP+    +   +  V+L  F + +
Sbjct: 360  IKFVREYAALHISKRGLNSLILRDNWSRIKADFLKLLPKIFYGKFDTILKVALEDFESNL 419

Query: 459  QPFGFTIALQELGSIYDDFFLGCDDWVSDESPEKVLASLEGLYEQ-ARVGTQSGVSTSYG 283
             P  F + LQE GS  +      D ++       + A + GL E    +      S+ Y 
Sbjct: 420  APLTFRVRLQEYGS--ESLTNRLDSFIYRTG--GIAAVVNGLIELFGPINKSDRKSSPYS 475

Query: 282  PFGCCEVLEVRPQAIVGCLLWLLVKSHCFYSLGRVN 175
             F C E+  V    +   ++ +L +S+   +L  +N
Sbjct: 476  DFYCAELFVVNSGTLRRSIIDMLKRSYSLNALMELN 511


>gb|AGG13282.1| Replicase [Garlic common latent virus]
          Length = 1951

 Score =  417 bits (1071), Expect = e-113
 Identities = 227/482 (47%), Positives = 301/482 (62%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSPLEEVL+SF+ SEQSLI+  A+  Y+ LE++ F FFNY +  +AKE+L+ AG+
Sbjct: 1    MALTYRSPLEEVLTSFSASEQSLIAEPAITSYRGLERDLFHFFNYNVGPYAKEKLIGAGV 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFSG+PHSHPVCKTLEN+ LY VLP  +++ F  VGIK+ K+NFL+ R  +LSMV +
Sbjct: 61   YLSPFSGIPHSHPVCKTLENHLLYRVLPSILDNSFLFVGIKESKLNFLRARHQNLSMVEL 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS DR RY  DF  +I+     +      +    LR L+PHCI  K R  FLHDE
Sbjct: 121  VNRYVTSADRTRYPNDFHLSITAEQCFNRYDGFKHLGPGLRKLLPHCITVKPRRLFLHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW +R+L  FL A KP+++LGT+VYPPELL G   SLN WCY + + G D  F PDG 
Sbjct: 181  LHYWCERDLVTFLSAVKPEKVLGTIVYPPELLKGVKFSLNKWCYDFDVEGDDLIFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             +ESY Q +   + L+   + L DGSVY +DV+ S F HH+++IT G+A+     SF+ F
Sbjct: 241  RTESYTQPLSGCFYLKVGTLKLLDGSVYHIDVVHSTFCHHLISITAGEAVRAPTNSFSNF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            +ATTC GL N+A  +   CI +P  V   +Y+YLRTLQKPD+QSA+AKL Q++  PT YQ
Sbjct: 301  DATTCRGLPNVAFRSLGPCIAVPYPVISRVYRYLRTLQKPDLQSAMAKLSQIMPEPTGYQ 360

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            IKF+ EFS MVI        F        K  L    P+ +  R    R  SL  FV  M
Sbjct: 361  IKFMTEFSKMVIDTPVGASFFQVAIFEKFKGFLTTFFPKYVAARFDVARIRSLDEFVEHM 420

Query: 459  QPFGFTI-ALQELGSIYDDFFLGCDDWVSDESPEKVLASLEGLYEQARVGTQSGVSTSYG 283
             P+ F I A+     ++   F   ++   DE  + + A LE  +     G + G + + G
Sbjct: 421  CPYTFKIKAVVHDMRLHQLLFPRDEEMPRDEDFDTIRA-LEMQWGGGANGERIGAAYTVG 479

Query: 282  PF 277
            PF
Sbjct: 480  PF 481


>ref|YP_006522434.1| RNA-dependent RNA polymerase [Potato virus H]
            gi|395406942|gb|AFN61353.1| RNA-dependent RNA polymerase
            [Potato virus H]
          Length = 1949

 Score =  414 bits (1063), Expect = e-112
 Identities = 210/434 (48%), Positives = 286/434 (65%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSPLE+++++F  + QS IS TA   YK  E+ NF  FNYAL A AKERL  +G+
Sbjct: 1    MALTYRSPLEDIVAAFDPAVQSSISNTAAQSYKEYEQSNFELFNYALSAKAKERLSTSGV 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSP+S VPHSHPVCKTLENYFLY VLP Y++S FY VGIK  K+  LK+R  +L +V+ 
Sbjct: 61   YLSPYSAVPHSHPVCKTLENYFLYKVLPSYLDSRFYFVGIKNFKLELLKKRSKNLDLVSS 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NR+V+S D+LRY +DFV   S      VS R+  +  TLRDL+P  +   A+  FLHDE
Sbjct: 121  INRFVSSADKLRYTSDFVRLQSSKSASLVSKRVVLEDVTLRDLLPAAMARSAKYLFLHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW+KR L  FL   +P+ +L T+V PPE L G  ESLN WCY+Y + G    F PDG 
Sbjct: 181  LHYWSKRTLMNFLSELQPEVVLATVVIPPETLAGAKESLNRWCYEYEVSGSKLYFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             +E Y Q + + YLL+C K+LL+DG VYCVDV+ SKFAHH++ I++GDA+V  +RS+  F
Sbjct: 241  RAEGYEQPLGASYLLKCGKLLLDDGQVYCVDVVCSKFAHHLLCISKGDAVVPTRRSYGPF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            +AT+  GL NL     K  I +  +V   +Y+YLRTL+KPD QSA+AKL Q++  PT+ +
Sbjct: 301  DATSARGLSNLTASLKKY-IPVNFEVMSKVYRYLRTLKKPDAQSAMAKLSQILPSPTSAE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            IKFV EF+ +VI+      +     L      +   LP  L  R+A ++ VSL  FV + 
Sbjct: 360  IKFVSEFADLVIETKGIHSMICPARLTLWLGKVGNVLPPCLRERIATVKEVSLDEFVASF 419

Query: 459  QPFGFTIALQELGS 418
            +P+   + + ++ +
Sbjct: 420  EPYTLNVEVVDVST 433


>gb|AIZ76637.1| replicase polyprotein [Elderberry carlavirus E]
          Length = 1958

 Score =  413 bits (1062), Expect = e-112
 Identities = 242/583 (41%), Positives = 328/583 (56%), Gaps = 18/583 (3%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            M LTYRSP+EE++ SF  + Q+ IS+ A + YK +E+ +F  F+YAL A AKERL +AGI
Sbjct: 1    MTLTYRSPMEEIVGSFEPAIQTAISSVAANAYKEMEETDFHLFHYALPAIAKERLSKAGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPS------ 1378
            YLSP+SGVPHSHPVCKTLENY LY VLP Y+++ F  VGIK  K+N LK R         
Sbjct: 61   YLSPYSGVPHSHPVCKTLENYLLYKVLPSYIDNKFCFVGIKSFKLNVLKVRAEKNKAKIQ 120

Query: 1377 -LSMVNVLNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKAR 1201
             L +++ LNRYVTS D+LRYG DFV   S   P           D L+ L+P C++ +++
Sbjct: 121  KLDLIDSLNRYVTSADKLRYGNDFVTTSSIQSPTLKRHAGLMHVDALKTLIPECLKRRSK 180

Query: 1200 SFFLHDELHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDF 1021
              F+HDELHYW+  +L  FL   +P+ LL T+VYPPELL+G   SL+ WCY Y + G + 
Sbjct: 181  YLFMHDELHYWSPDDLTGFLEVIQPETLLATIVYPPELLMGASSSLHKWCYTYELKGSNL 240

Query: 1020 EFAPDGEYSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRR 841
             F PDG  SE Y Q    GYLL+ NKI L  G  YCVD+I SKFAHH+VAIT+G+AI   
Sbjct: 241  LFYPDGVRSEGYEQPAKGGYLLRTNKIELPCGLTYCVDIIHSKFAHHLVAITKGEAITNT 300

Query: 840  KRSFAGFEATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLV 661
             RS+  F+A +CTGL  ++      C  +  +    IY+YLRTL+KPD+QSA+AKL QL+
Sbjct: 301  YRSYGPFDAVSCTGLSMISRDVRN-CFPVTFETVSKIYRYLRTLKKPDIQSAMAKLSQLI 359

Query: 660  RHPTAYQIKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSL 481
              PT  +IKF+ EFS +VIK         A+ L      L    P +        + + L
Sbjct: 360  PDPTGPEIKFLEEFSKLVIKTGTVSTQIDAELLKVFMGKLVGCTPTNFSRLFGISKTIGL 419

Query: 480  GTFVNTMQPFGFTIALQELGSIYDDFFLGCDDWVSDESPEKVLASLE-GLYEQARVGTQS 304
             TF+  ++P+ FT+ LQ L S+  +F L   ++   E  E + A+LE G+Y  A     S
Sbjct: 420  DTFIAALEPYSFTLKLQPLKSL-RNFHLSLFNFGEQEGGEDLEAALEHGMYSPA---NWS 475

Query: 303  GVSTSYGPFGCCEVLEVRPQAIVGC--------LLWLLVKSHCFYSLGRVNRTYLEDYIG 148
             V       G       +P  I+ C        L   + +SH   +   V   YL  ++ 
Sbjct: 476  LVRVPSPYVGLTSAARRKPHPILYCPERHTIRGLALAVHRSHYGGATVGVTEDYLIHWLC 535

Query: 147  VVFKRTFIGAACLVKKNISWYA--RRCEGALLELCARFRAKVR 25
             V KR  + A  L+   +   A   R    +  L A+F  K R
Sbjct: 536  AVKKRGNMHAKALISSVLGDPAMINRIRRIICSLGAKFARKKR 578


>ref|YP_002302557.1| RdRp polyprotein replicase [Potato latent virus]
            gi|211956480|gb|ACJ14318.1| RdRp polyprotein replicase
            [Potato latent virus]
          Length = 1780

 Score =  412 bits (1058), Expect = e-112
 Identities = 218/478 (45%), Positives = 297/478 (62%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSPLE+++ +F  S Q+ I+ TA + YK LE+E    FNYAL   AK+RL+ AGI
Sbjct: 1    MALTYRSPLEDIVGAFEPSVQTAIANTAANHYKQLEEEKGILFNYALPPEAKQRLIGAGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS VPHSHPVCK LEN+ LY  LP  +++ F  VGIK  K++ LK+R  +LSM+  
Sbjct: 61   YLSPFSAVPHSHPVCKILENHLLYVELPSRLDNSFMFVGIKNFKLDLLKRRHANLSMIQT 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYV S D++RYG++FV   S   PE    +       LR+LVP  +   A++ FLHDE
Sbjct: 121  INRYVCSLDKIRYGSNFVVRSSASYPELCRRKGELDGAVLRELVPELMIKSAKNLFLHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYWT R+L  FL   KP +LLGTLVYPPELL G  +SLN WCY Y +      F PDG 
Sbjct: 181  LHYWTHRDLITFLEVLKPDKLLGTLVYPPELLKGAKKSLNSWCYTYRVDKDKLFFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
            +SE Y Q +  GYLL+ ++I   DG VYCVDV+ SKFAHH++AITRGD IV  +RSFA F
Sbjct: 241  HSEGYEQPLSGGYLLETSRITTRDGEVYCVDVVCSKFAHHLIAITRGDLIVPTQRSFAPF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            EA T  GL+NL  G  + C  +   V   +Y+YLRTL+KPD QSA+AKL QL  +PT  +
Sbjct: 301  EAITSKGLNNLVRGKVE-CFPVCASVVSKLYRYLRTLKKPDEQSAMAKLSQLQANPTGEE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            I F++ F+ +VI  +  D L   DS+      L   LP  L  R+ +++ VSL  FV+  
Sbjct: 360  IHFIQGFAKLVINTNKIDSLINCDSIKVFMGKLFGPLPNWLTKRLRSVQEVSLDEFVHYF 419

Query: 459  QPFGFTIALQELGSIYDDFFLGCDDWVSDESPEKVLASLEGLYEQARVGTQSGVSTSY 286
            +P+   +  + +   + +F    +D+  ++    ++  L+      ++ T   + T Y
Sbjct: 420  EPYVVNVPTKHVNYGF-EFNYVMEDFRYEQGENDLVDMLDNFDGSTKMSTSLCMMTPY 476


>gb|AEI55831.1| RNA dependent RNA polymerase [Potato virus H]
          Length = 1949

 Score =  410 bits (1054), Expect = e-111
 Identities = 210/427 (49%), Positives = 283/427 (66%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSPLE+++++F  + QS IS TA   YK  E+ NF  FNYAL A AKERL  +GI
Sbjct: 1    MALTYRSPLEDIVAAFDPAVQSSISNTAAQSYKEYEQNNFELFNYALSAKAKERLSTSGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSP+S VPHSHPVCKTLENYFLY VLP Y++S FY VGIK  K+  LK+R  +L +V+ 
Sbjct: 61   YLSPYSAVPHSHPVCKTLENYFLYKVLPSYLDSRFYFVGIKNFKLELLKKRSKNLDLVSS 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NR+V+S D+LRY +DFV   S      VS R+  +  TLRDL+P  +   A+  FLHDE
Sbjct: 121  INRFVSSADKLRYNSDFVRLQSSKSASLVSKRVVLEDVTLRDLLPAAMARSAKYLFLHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW+KR L  FL   +P+ +L T+V PPE L G  ESLN WCY+Y + G    F PDG 
Sbjct: 181  LHYWSKRTLMNFLSELQPEVVLATVVIPPETLAGAKESLNRWCYEYEVSGSKLYFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             +E Y Q + + YLL+C K+LL+DG VYCVDV+ SKFAHH++ I++GDA+V  +RS+  F
Sbjct: 241  RAEGYEQPLGASYLLKCGKLLLDDGQVYCVDVVCSKFAHHLLCISKGDAVVPTRRSYGPF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            +AT+  GL NL   + K  I +  +V   +Y+YLRTL+KPD QSA+AKL Q++  PT+ +
Sbjct: 301  DATSARGLSNLT-ASLKRYIPVNFEVMSKVYRYLRTLKKPDAQSAMAKLSQILPSPTSAE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFVNTM 460
            IKFV EF+ +VI+      +     L      +   LP     ++AA++ VSL  FV + 
Sbjct: 360  IKFVSEFADLVIETKGIHSMICPARLTLWLGKVGNVLPPCWREKLAAVKEVSLDEFVASF 419

Query: 459  QPFGFTI 439
            +P+   +
Sbjct: 420  EPYTLNV 426


>gb|AIZ76631.1| replicase polyprotein [Elderberry carlavirus D]
          Length = 1980

 Score =  408 bits (1049), Expect = e-111
 Identities = 214/435 (49%), Positives = 287/435 (65%), Gaps = 3/435 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYRSP+EE+L+SFT+ EQS ISA AV+  + +E++N+  FN+AL A AKE+L ++GI
Sbjct: 1    MALTYRSPIEEILASFTSVEQSSISAHAVNGLRKVEQDNYELFNFALSAKAKEKLSRSGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS +PHSHPVCKTLENY LY VLP Y+++ F+ VGIK  K+ +LK R  +L ++  
Sbjct: 61   YLSPFSAMPHSHPVCKTLENYMLYKVLPSYIDNTFFFVGIKNSKLEYLKSRDSNLGLLKS 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NR+VTS+D+LRYG+DFV    G            +  TL  L+P  I++KAR+ F HDE
Sbjct: 121  INRFVTSKDKLRYGSDFV-KYDGTRASHPKYMSECEPTTLSGLLPPVIQNKARNLFFHDE 179

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW+  +L  FL   +P+ +L TLVYPPELL+G   SLN WCY+Y +   +  F PDG 
Sbjct: 180  LHYWSSDDLINFLSVVRPQTVLATLVYPPELLVGSKCSLNRWCYEYEVEDDELRFFPDGV 239

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             SE Y Q    GYLL+ +KI L+DG VYCVD++ SKFAHH+VAITRG+A V R R F  F
Sbjct: 240  RSEGYSQPKSGGYLLRTSKIKLDDGEVYCVDLLHSKFAHHLVAITRGNANVTRTRHFGNF 299

Query: 819  EATTCTGLDNLAEG---TNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPT 649
            EA + TGL    +    T  +C  L       IY+YLRTLQKPD+QSA+AKL Q+   PT
Sbjct: 300  EAVSTTGLRKHCKNVGDTFPICASL----VSKIYRYLRTLQKPDIQSAMAKLSQIQPEPT 355

Query: 648  AYQIKFVREFSAMVIKHSDCDKLFGADSLVGLKKMLAAALPRSLVCRVAALRNVSLGTFV 469
             ++IKFV+EFS  VI+ ++   +   + + GLK      LP  L+  +  ++  SL  FV
Sbjct: 356  GFEIKFVQEFSKFVIECANHKSILNPEFINGLKIKGYNLLPNLLIRNLKVIKEQSLDEFV 415

Query: 468  NTMQPFGFTIALQEL 424
            + +  F F + L EL
Sbjct: 416  SGLGDFTFKVTLVEL 430


>gb|AGS13082.1| RdRP [Cowpea mild mottle virus]
          Length = 1859

 Score =  405 bits (1041), Expect = e-110
 Identities = 207/454 (45%), Positives = 297/454 (65%), Gaps = 1/454 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYR+P+E+++SSF  + QS I++ A   YK LE++NF  FN+ L+A AK++L  AGI
Sbjct: 1    MALTYRTPMEDIVSSFEPAMQSAIASKAALSYKALEEKNFQVFNFHLKAEAKQKLSAAGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS V HSHPVCKTLEN+ LY+VLP YVN+ F+ VGIK  K+N LK R P+LSM++ 
Sbjct: 61   YLSPFSAVVHSHPVCKTLENHILYSVLPNYVNNRFFFVGIKNSKINLLKSRDPNLSMISA 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS+D  RYG DFV   S  +      R      TL+DLVP+ +  KA+  F+HDE
Sbjct: 121  INRYVTSKDVCRYGNDFVVRSSKEINGLSRHRATLAEATLKDLVPNLLNIKAKHLFMHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW +++L  FL    P+ LL T+VYPPELL+G  +SLNPWCY + I G    F PDG 
Sbjct: 181  LHYWREKDLITFLEVVSPEVLLATVVYPPELLVGAKQSLNPWCYDFDIKGGKLLFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             SE Y Q +  GYLL   +I L++G +YC+D+I SK+AHH++++T+G A+    RSF GF
Sbjct: 241  RSEGYEQPLKGGYLLTAKEIHLQNGDIYCIDLIHSKYAHHLISVTKGAAVTCEYRSFDGF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            EA +  GL NL+  +N     +  D+   +Y+YLR+L+KPD+QSA+AKL Q+V  P+A +
Sbjct: 301  EAVSFGGLVNLSSNSNPF-FPVSFDLVSKMYRYLRSLKKPDLQSAMAKLSQIVPEPSANE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSL-VGLKKMLAAALPRSLVCRVAALRNVSLGTFVNT 463
            IKFV+EF+ +V+  S+   L   + L + L ++     P   + +  +++ + L  F++ 
Sbjct: 360  IKFVQEFAELVMSCSNVSSLLSVNRLRLFLCRVYQKTFPAWFLNKFTSIKELCLDDFISQ 419

Query: 462  MQPFGFTIALQELGSIYDDFFLGCDDWVSDESPE 361
            ++PF FT   + +   Y +  L   DW+  +  E
Sbjct: 420  LKPFTFTKNTKIINLSYVEDML---DWIEFDVEE 450


>gb|AHG23050.1| replication polyprotein [Cowpea mild mottle virus]
          Length = 1859

 Score =  404 bits (1039), Expect = e-109
 Identities = 207/454 (45%), Positives = 296/454 (65%), Gaps = 1/454 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYR+P+E+++SSF  + QS I++ A   YK LE++NF  FN+ L+A AK++L  AGI
Sbjct: 1    MALTYRTPMEDIVSSFEPAMQSAIASKAALSYKALEEKNFQVFNFHLKAEAKQKLSAAGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS V HSHPVCKTLEN+ LY+VLP YVN+ F+ VGIK  K+N LK R P+LSM++ 
Sbjct: 61   YLSPFSAVVHSHPVCKTLENHILYSVLPNYVNNRFFFVGIKNSKINLLKSRDPNLSMISA 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS+D  RYG DFV   S  +      R      TL+DLVP+ +  KA+  F+HDE
Sbjct: 121  INRYVTSKDVCRYGNDFVVRSSKEINGLSRHRATLAEATLKDLVPNLLNIKAKHLFMHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW +++L  FL    P+ LL T+VYPPELL+G  +SLNPWCY + I G    F PDG 
Sbjct: 181  LHYWREKDLITFLEVVSPEVLLATVVYPPELLVGAKQSLNPWCYDFDIKGGKLLFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             SE Y Q +  GYLL   +I L +G +YC+D+I SK+AHH++++T+G A+    RSF GF
Sbjct: 241  RSEGYEQPLKGGYLLTAKEIHLPNGDIYCIDLIHSKYAHHLISVTKGAAVTCEYRSFDGF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            EA +  GL NL+  +N     +  D+   +Y+YLR+L+KPD+QSA+AKL Q+V  P+A +
Sbjct: 301  EAVSFGGLVNLSSSSNPF-FPVSFDLVSKMYRYLRSLKKPDLQSAMAKLSQIVPEPSANE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSL-VGLKKMLAAALPRSLVCRVAALRNVSLGTFVNT 463
            IKFV+EF+ +V+  S+   L   + L + L ++     P   + +  +++ + L  F++ 
Sbjct: 360  IKFVQEFAELVMSCSNVSSLLSVNRLRLFLCRVYQKTFPAWFLNKFTSIKELCLDDFISQ 419

Query: 462  MQPFGFTIALQELGSIYDDFFLGCDDWVSDESPE 361
            ++PF FT   + +   Y +  L   DW+  +  E
Sbjct: 420  LKPFTFTKKTKIINLSYVEDML---DWIEFDVEE 450


>gb|AHG23045.1| replication polyprotein [Cowpea mild mottle virus]
          Length = 1859

 Score =  404 bits (1039), Expect = e-109
 Identities = 207/454 (45%), Positives = 296/454 (65%), Gaps = 1/454 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYR+P+E+++SSF  + QS I++ A   YK LE++NF  FN+ L+A AK++L  AGI
Sbjct: 1    MALTYRTPMEDIVSSFEPAMQSAIASKAALSYKALEEKNFQVFNFHLKAEAKQKLSAAGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS V HSHPVCKTLEN+ LY+VLP YVN+ F+ VGIK  K+N LK R P+LSM++ 
Sbjct: 61   YLSPFSAVVHSHPVCKTLENHILYSVLPNYVNNRFFFVGIKNSKINLLKSRDPNLSMISA 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS+D  RYG DFV   S  +      R      TL+DLVP+ +  KA+  F+HDE
Sbjct: 121  INRYVTSKDVCRYGNDFVVRSSKEINGLSRHRATLAEATLKDLVPNLLNIKAKHLFMHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW +++L  FL    P+ LL T+VYPPELL+G  +SLNPWCY + I G    F PDG 
Sbjct: 181  LHYWREKDLITFLEVVSPEVLLATVVYPPELLVGAKQSLNPWCYDFDIKGGKLLFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             SE Y Q +  GYLL   +I L +G +YC+D+I SK+AHH++++T+G A+    RSF GF
Sbjct: 241  RSEGYEQPLKGGYLLTAKEIHLPNGDIYCIDLIHSKYAHHLISVTKGAAVTCEYRSFDGF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            EA +  GL NL+  +N     +  D+   +Y+YLR+L+KPD+QSA+AKL Q+V  P+A +
Sbjct: 301  EAVSFGGLVNLSSNSNPF-FPVSFDLVSKMYRYLRSLKKPDLQSAMAKLSQIVPEPSANE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSL-VGLKKMLAAALPRSLVCRVAALRNVSLGTFVNT 463
            IKFV+EF+ +V+  S+   L   + L + L ++     P   + +  +++ + L  F++ 
Sbjct: 360  IKFVQEFAELVMSCSNVSSLLSVNRLRLFLCRVYQKTFPAWFLNKFTSIKELCLDDFISQ 419

Query: 462  MQPFGFTIALQELGSIYDDFFLGCDDWVSDESPE 361
            ++PF FT   + +   Y +  L   DW+  +  E
Sbjct: 420  LKPFTFTKKTKIINLSYVEDML---DWIEFDVEE 450


>gb|AGS13094.1| RdRP [Cowpea mild mottle virus]
          Length = 1854

 Score =  404 bits (1039), Expect = e-109
 Identities = 208/454 (45%), Positives = 296/454 (65%), Gaps = 1/454 (0%)
 Frame = -1

Query: 1719 MALTYRSPLEEVLSSFTTSEQSLISATAVDRYKYLEKENFGFFNYALEAHAKERLVQAGI 1540
            MALTYR+P+E+++SSF  + QS I++ A   YK LE++NF  FN+ L+A AK++L  AGI
Sbjct: 1    MALTYRTPMEDIVSSFEPAMQSAIASKAALSYKALEEKNFQVFNFHLKAEAKQKLSAAGI 60

Query: 1539 YLSPFSGVPHSHPVCKTLENYFLYTVLPQYVNSDFYLVGIKQGKVNFLKQRCPSLSMVNV 1360
            YLSPFS V HSHPVCKTLEN+ LY+VLP YVN+ F+ VGIK  K+N LK R P+LSM++ 
Sbjct: 61   YLSPFSAVVHSHPVCKTLENHILYSVLPNYVNNRFFFVGIKNSKINLLKSRDPNLSMISA 120

Query: 1359 LNRYVTSQDRLRYGADFVCAISGVMPESVSARICYQSDTLRDLVPHCIRSKARSFFLHDE 1180
            +NRYVTS+D  RYG DFV   S  +      R      TL+DLVP+ +  KA+  F+HDE
Sbjct: 121  INRYVTSKDVCRYGNDFVVRSSKEINGLSRHRATLAEATLKDLVPNLLNIKAKHLFMHDE 180

Query: 1179 LHYWTKRELKAFLVACKPKELLGTLVYPPELLIGCPESLNPWCYKYTIHGKDFEFAPDGE 1000
            LHYW +++L  FL    P+ LL T+VYPPELL+G  +SLNPWCY + I G    F PDG 
Sbjct: 181  LHYWREKDLITFLEVVSPEVLLATVVYPPELLVGAKQSLNPWCYDFDIKGGKLLFYPDGV 240

Query: 999  YSESYMQRIDSGYLLQCNKILLEDGSVYCVDVISSKFAHHVVAITRGDAIVRRKRSFAGF 820
             SE Y Q +  GYLL   +I L +G +YC+D+I SK+AHH++++T+G AI    RSF GF
Sbjct: 241  RSEGYEQPLKGGYLLTAKEIHLPNGDIYCIDLIHSKYAHHLISVTKGAAITCEYRSFDGF 300

Query: 819  EATTCTGLDNLAEGTNKLCIRLPCDVTISIYKYLRTLQKPDVQSAVAKLGQLVRHPTAYQ 640
            EA +  GL NL+  +N     +  D+   +Y+YLR+L+KPD+QSA+AKL Q+V  P+A +
Sbjct: 301  EAVSFGGLVNLSSNSNPF-FPVSFDLVSKMYRYLRSLKKPDLQSAMAKLSQIVPEPSANE 359

Query: 639  IKFVREFSAMVIKHSDCDKLFGADSL-VGLKKMLAAALPRSLVCRVAALRNVSLGTFVNT 463
            IKFV+EF+ +V+  S+   L   + L + L ++     P   + +  +++ + L  F++ 
Sbjct: 360  IKFVQEFAELVMSCSNVSSLLSVNRLRLFLCRVYQKTFPAWFLNKFTSIKELCLDDFISQ 419

Query: 462  MQPFGFTIALQELGSIYDDFFLGCDDWVSDESPE 361
            ++PF FT   + +   Y +  L   DW+  +  E
Sbjct: 420  LKPFTFTKNTKIINLSYVEDML---DWIEFDVEE 450