BLASTX nr result
ID: Aconitum23_contig00001330
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum23_contig00001330
(2573 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II su... 1304 0.0
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 1302 0.0
ref|XP_009419772.1| PREDICTED: DNA-directed RNA polymerase II su... 1290 0.0
ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II su... 1289 0.0
ref|XP_010686499.1| PREDICTED: DNA-directed RNA polymerase II su... 1278 0.0
ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Moru... 1278 0.0
ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1278 0.0
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su... 1277 0.0
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 1276 0.0
ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II su... 1276 0.0
gb|KDP20966.1| hypothetical protein JCGZ_21437 [Jatropha curcas] 1276 0.0
gb|KDO44202.1| hypothetical protein CISIN_1g000996mg [Citrus sin... 1276 0.0
gb|KDO44200.1| hypothetical protein CISIN_1g000996mg [Citrus sin... 1276 0.0
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 1276 0.0
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr... 1276 0.0
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo... 1275 0.0
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su... 1275 0.0
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid... 1275 0.0
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i... 1274 0.0
ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II su... 1273 0.0
>ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nelumbo
nucifera]
Length = 1189
Score = 1304 bits (3375), Expect = 0.0
Identities = 642/668 (96%), Positives = 655/668 (98%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI
Sbjct: 509 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 568
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 569 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIV 628
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKKKDIRALQQRES+E+ GWHDLV +G+IEYVD TMISMTINDL+TA
Sbjct: 629 EKQRLLIKKKDIRALQQRESSEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARL 688
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 689 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 748
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 749 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 808
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+RENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 809 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPSRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 868
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPIAQD+ SQG +SRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 869 DVIIGKTTPIAQDD-SQGQSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 927
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 928 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 987
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+LTAMIFLGP
Sbjct: 988 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGP 1047
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1048 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1107
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+M
Sbjct: 1108 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSM 1167
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1168 AIAPRMLT 1175
Score = 169 bits (428), Expect = 1e-38
Identities = 84/86 (97%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 404 GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 463
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 464 RAGVSQVLNRLTYASTLSHLRRLNSP 489
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 1302 bits (3370), Expect = 0.0
Identities = 642/668 (96%), Positives = 654/668 (97%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ+TKI
Sbjct: 513 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKI 572
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHRNP+LLVKTLRQLRRQVDVNTEVGVIRDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 573 FVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIV 632
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKK+DIRALQ RES ED GWHDLV++G+IEYVD TMISMTINDLI+A
Sbjct: 633 EKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARL 692
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 693 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 752
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 753 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 812
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 813 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 872
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPI+QD+ SQG ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 873 DVIIGKTTPISQDD-SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 931
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 932 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 991
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 992 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1051
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1052 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1111
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1112 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1171
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1172 AIAPRMLT 1179
Score = 169 bits (428), Expect = 1e-38
Identities = 84/86 (97%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 408 GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 467
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 468 RAGVSQVLNRLTYASTLSHLRRLNSP 493
>ref|XP_009419772.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Musa
acuminata subsp. malaccensis]
Length = 1212
Score = 1290 bits (3339), Expect = 0.0
Identities = 634/668 (94%), Positives = 653/668 (97%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEWSTENFEEISPAVIPQ+TKI
Sbjct: 535 MMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQSTKI 594
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHRNP+LLVKTLRQLRRQ+DVNTEVGVIRDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 595 FVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIV 654
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKKKDIRALQQRE+ E+ GWHDLV++G+IEY+D TMISMTINDL+ A
Sbjct: 655 EKQRLLIKKKDIRALQQRETPEE-GWHDLVSKGFIEYIDTEEEETTMISMTINDLVNARQ 713
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 714 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 773
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 774 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 833
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSY+KLDDDGLAPPGTRVSGE
Sbjct: 834 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYEKLDDDGLAPPGTRVSGE 893
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKT+PI QD+A QG ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 894 DVIIGKTSPIPQDDA-QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 952
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 953 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 1012
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+LTAMIFLGP
Sbjct: 1013 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGP 1072
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1073 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1132
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1133 RLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1192
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1193 AIAPRMLT 1200
Score = 157 bits (397), Expect = 5e-35
Identities = 78/81 (96%), Positives = 78/81 (96%)
Frame = -3
Query: 2556 LFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 2377
LFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 435 LFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 494
Query: 2376 QVLNRLTYASTLSHLRRLNSP 2314
QVLNRLTYASTLSHLRRLNSP
Sbjct: 495 QVLNRLTYASTLSHLRRLNSP 515
>ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amborella
trichopoda] gi|548863150|gb|ERN20505.1| hypothetical
protein AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 1289 bits (3335), Expect = 0.0
Identities = 635/668 (95%), Positives = 650/668 (97%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI
Sbjct: 507 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 566
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 567 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIV 626
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKK DIRALQQRES ++ GWHDLV +G+IEYVD TMISMTI+DL++A
Sbjct: 627 EKQRLLIKKSDIRALQQRESPDE-GWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARL 685
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 686 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 745
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDR
Sbjct: 746 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDR 805
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 806 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 865
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPI Q+E QG ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 866 DVIIGKTTPITQEEM-QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 924
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 925 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 984
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRL+AMIFLGP
Sbjct: 985 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGP 1044
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1045 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1104
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDI+QVHIPYACKLLFQELMAM
Sbjct: 1105 RLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGCKNKTDIIQVHIPYACKLLFQELMAM 1164
Query: 332 AIAPRMLT 309
AIAPRM T
Sbjct: 1165 AIAPRMFT 1172
Score = 160 bits (406), Expect = 4e-36
Identities = 79/85 (92%), Positives = 82/85 (96%)
Frame = -3
Query: 2568 LFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR 2389
LFR +FRKLTRDVR Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR
Sbjct: 403 LFRTMFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR 462
Query: 2388 AGVSQVLNRLTYASTLSHLRRLNSP 2314
AGVSQVLNRLT+ASTLSHLRRLNSP
Sbjct: 463 AGVSQVLNRLTFASTLSHLRRLNSP 487
>ref|XP_010686499.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Beta vulgaris
subsp. vulgaris] gi|870852317|gb|KMT04246.1| hypothetical
protein BVRB_8g183220 [Beta vulgaris subsp. vulgaris]
Length = 1200
Score = 1278 bits (3308), Expect = 0.0
Identities = 625/668 (93%), Positives = 649/668 (97%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEWSTENFEEISPAVIPQATKI
Sbjct: 519 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVIPQATKI 578
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+PELLVKTLRQLRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 579 FVNGCWVGIHRDPELLVKTLRQLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 638
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKKKDIRALQQRES ED GWHDLV +G+IEY+D TMISMTINDL++A
Sbjct: 639 EKQRLLIKKKDIRALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARL 698
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 699 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 758
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQS+IDR
Sbjct: 759 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSAIDR 818
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 819 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 878
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTP+AQ+EA QG +SRY+RRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+R
Sbjct: 879 DVIIGKTTPLAQEEA-QGPSSRYSRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 937
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 938 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 997
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAH+GKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+LTAMIFLGP
Sbjct: 998 IMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGP 1057
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1058 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1117
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+M
Sbjct: 1118 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSM 1177
Query: 332 AIAPRMLT 309
AIAPRM T
Sbjct: 1178 AIAPRMFT 1185
Score = 164 bits (414), Expect = 5e-37
Identities = 81/86 (94%), Positives = 82/86 (95%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVD GKD+NL FAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 414 GLFRMLFRKLTRDVRAYVQKCVDQGKDLNLSFAIKAKTITSGLKYSLATGNWGQANAAGT 473
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 474 RAGVSQVLNRLTYASTLSHLRRLNSP 499
>ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
gi|587931023|gb|EXC18122.1| DNA-directed RNA polymerase
II subunit [Morus notabilis]
Length = 1193
Score = 1278 bits (3307), Expect = 0.0
Identities = 623/668 (93%), Positives = 646/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 512 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 571
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 572 FVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 631
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKK+DIRALQQRE+ E+ GWHDLV+ G+IEY+D TMISMTINDL+ A
Sbjct: 632 EKQRLLIKKRDIRALQQRETPEEAGWHDLVSNGFIEYIDTEEEETTMISMTINDLVQARL 691
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 692 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 751
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+IDR
Sbjct: 752 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDR 811
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 812 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 871
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPIAQDEA ASRYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+R
Sbjct: 872 DVIIGKTTPIAQDEAQGQAASRYTRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVR 931
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
S+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 932 SIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 991
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 992 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1051
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1052 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1111
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1112 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1171
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1172 AIAPRMLT 1179
Score = 171 bits (434), Expect = 2e-39
Identities = 85/86 (98%), Positives = 85/86 (98%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVRGY QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 407 GLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 466
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 467 RAGVSQVLNRLTYASTLSHLRRLNSP 492
>ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Elaeis guineensis]
Length = 1187
Score = 1278 bits (3306), Expect = 0.0
Identities = 627/668 (93%), Positives = 648/668 (97%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVIPQA+KI
Sbjct: 508 MMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWGTENFEEISPAVIPQASKI 567
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNG WVGIHRNP+LLV+TLR+LRRQ+DVNTEVGV+RDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 568 FVNGSWVGIHRNPDLLVRTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIV 627
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
E QRLLIKKKDI+ALQQRES E+ GWHDLV +G+IEY+D TMI+MTINDL+ A
Sbjct: 628 ENQRLLIKKKDIQALQQRESPEE-GWHDLVAKGFIEYIDTEEEETTMIAMTINDLVNARQ 686
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 687 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 746
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 747 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 806
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 807 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 866
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKT+PI QD+ SQG ASRYTRRDHSTS+RHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 867 DVIIGKTSPIPQDD-SQGQASRYTRRDHSTSVRHSESGMVDQVLLTTNADGLRFVKVRMR 925
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 926 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 985
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+LTAMIFLGP
Sbjct: 986 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGP 1045
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1046 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1105
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1106 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1165
Query: 332 AIAPRMLT 309
AIAPRM T
Sbjct: 1166 AIAPRMFT 1173
Score = 167 bits (423), Expect = 4e-38
Identities = 83/86 (96%), Positives = 83/86 (96%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN AGT
Sbjct: 403 GLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANQAGT 462
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 463 RAGVSQVLNRLTYASTLSHLRRLNSP 488
>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
sinensis]
Length = 1195
Score = 1277 bits (3304), Expect = 0.0
Identities = 626/668 (93%), Positives = 646/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 514 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 574 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKK+DI ALQQRES ED GWHDLV +G+IEY+D TMISMTINDL+ A
Sbjct: 634 EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 693
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
+PEEAY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 694 HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 754 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 814 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPI+QDEA QG ASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+R
Sbjct: 874 DVIIGKTTPISQDEA-QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 933 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 993 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1112
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1113 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1173 AIAPRMLT 1180
Score = 169 bits (428), Expect = 1e-38
Identities = 84/86 (97%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 409 GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 468
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 469 RAGVSQVLNRLTYASTLSHLRRLNSP 494
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 1276 bits (3303), Expect = 0.0
Identities = 621/668 (92%), Positives = 650/668 (97%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 511 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 570
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+P++LV+TLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 571 FVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 630
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIK+KDI+ALQQRE+ ED GWHDLV +G+IEY+D TMISMTINDL++A
Sbjct: 631 EKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARL 690
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 691 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 750
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 751 MDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 810
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 811 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGE 870
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DV+IGKTTPIAQDEA QG A+RYTRRDHSTSLRHSE+GMVDQVLLTTNADGLRFVKVR+R
Sbjct: 871 DVVIGKTTPIAQDEA-QGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVR 929
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 930 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIEC 989
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLT+MIFLGP
Sbjct: 990 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGP 1049
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1050 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1109
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+M
Sbjct: 1110 RLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSM 1169
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1170 AIAPRMLT 1177
Score = 171 bits (434), Expect = 2e-39
Identities = 85/86 (98%), Positives = 85/86 (98%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVRGY QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 406 GLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 465
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 466 RAGVSQVLNRLTYASTLSHLRRLNSP 491
>ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha
curcas]
Length = 1193
Score = 1276 bits (3301), Expect = 0.0
Identities = 624/668 (93%), Positives = 648/668 (97%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 513 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 572
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 573 FVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 632
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKKKDI ALQQRES+E+ GWHDLV +G+IEY+D TMISMTI+DL+ A
Sbjct: 633 EKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARI 692
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 693 NPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 752
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 753 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 812
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 813 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGE 872
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPIAQ+EA QG ++RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+R
Sbjct: 873 DVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVR 931
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 932 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 991
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 992 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1051
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1052 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1111
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1112 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1171
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1172 AIAPRMLT 1179
Score = 168 bits (425), Expect = 3e-38
Identities = 83/86 (96%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLT+DVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 408 GLFRMLFRKLTKDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 467
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 468 RAGVSQVLNRLTYASTLSHLRRLNSP 493
>gb|KDP20966.1| hypothetical protein JCGZ_21437 [Jatropha curcas]
Length = 841
Score = 1276 bits (3301), Expect = 0.0
Identities = 624/668 (93%), Positives = 648/668 (97%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 221 FVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKKKDI ALQQRES+E+ GWHDLV +G+IEY+D TMISMTI+DL+ A
Sbjct: 281 EKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARI 340
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 341 NPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 401 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 461 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPIAQ+EA QG ++RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+R
Sbjct: 521 DVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVR 579
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 580 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 639
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 640 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 699
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 700 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 759
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 760 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 819
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 820 AIAPRMLT 827
Score = 168 bits (425), Expect = 3e-38
Identities = 83/86 (96%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLT+DVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 56 GLFRMLFRKLTKDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 115
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 116 RAGVSQVLNRLTYASTLSHLRRLNSP 141
>gb|KDO44202.1| hypothetical protein CISIN_1g000996mg [Citrus sinensis]
Length = 842
Score = 1276 bits (3301), Expect = 0.0
Identities = 625/668 (93%), Positives = 646/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 161 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 220
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 221 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 280
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKK+DI ALQQRES ED GWHDLV +G+IEY+D TMISMTINDL+ A
Sbjct: 281 EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 340
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
+PEEAY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 341 HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 400
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 401 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 460
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 461 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 520
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPI+QDEA QG ASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+R
Sbjct: 521 DVIIGKTTPISQDEA-QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 579
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 580 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 639
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 640 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 699
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKE
Sbjct: 700 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 759
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 760 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 819
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 820 AIAPRMLT 827
Score = 169 bits (428), Expect = 1e-38
Identities = 84/86 (97%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 56 GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 115
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 116 RAGVSQVLNRLTYASTLSHLRRLNSP 141
>gb|KDO44200.1| hypothetical protein CISIN_1g000996mg [Citrus sinensis]
Length = 1186
Score = 1276 bits (3301), Expect = 0.0
Identities = 625/668 (93%), Positives = 646/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 505 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 564
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 565 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 624
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKK+DI ALQQRES ED GWHDLV +G+IEY+D TMISMTINDL+ A
Sbjct: 625 EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 684
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
+PEEAY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 685 HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 744
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 745 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 804
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 805 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 864
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPI+QDEA QG ASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+R
Sbjct: 865 DVIIGKTTPISQDEA-QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 923
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 924 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 983
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 984 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1043
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKE
Sbjct: 1044 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1103
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1104 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1163
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1164 AIAPRMLT 1171
Score = 169 bits (428), Expect = 1e-38
Identities = 84/86 (97%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 400 GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 459
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 460 RAGVSQVLNRLTYASTLSHLRRLNSP 485
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 1276 bits (3301), Expect = 0.0
Identities = 624/668 (93%), Positives = 648/668 (97%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 514 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 574 FVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKKKDI ALQQRES+E+ GWHDLV +G+IEY+D TMISMTI+DL+ A
Sbjct: 634 EKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARI 693
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 694 NPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 754 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 814 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPIAQ+EA QG ++RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+R
Sbjct: 874 DVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVR 932
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 933 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 993 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1112
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1113 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1173 AIAPRMLT 1180
Score = 169 bits (428), Expect = 1e-38
Identities = 84/86 (97%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 409 GLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 468
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 469 RAGVSQVLNRLTYASTLSHLRRLNSP 494
>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
gi|557525528|gb|ESR36834.1| hypothetical protein
CICLE_v10027701mg [Citrus clementina]
gi|641824899|gb|KDO44201.1| hypothetical protein
CISIN_1g000996mg [Citrus sinensis]
Length = 1195
Score = 1276 bits (3301), Expect = 0.0
Identities = 625/668 (93%), Positives = 646/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 514 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 574 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKK+DI ALQQRES ED GWHDLV +G+IEY+D TMISMTINDL+ A
Sbjct: 634 EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 693
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
+PEEAY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 694 HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 754 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 814 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPI+QDEA QG ASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+R
Sbjct: 874 DVIIGKTTPISQDEA-QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 933 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 993 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKE
Sbjct: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1112
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1113 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1173 AIAPRMLT 1180
Score = 169 bits (428), Expect = 1e-38
Identities = 84/86 (97%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 409 GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 468
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 469 RAGVSQVLNRLTYASTLSHLRRLNSP 494
>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 1275 bits (3299), Expect = 0.0
Identities = 626/668 (93%), Positives = 647/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KI
Sbjct: 541 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKI 600
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHRNP+LLVKTLR+LRRQ+DVNTEVGV+RDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 601 FVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIV 660
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
E QRLLIKK+ IRALQQRE+ E+ GWHDLV +G+IEY+D TMISMTINDLI A
Sbjct: 661 ENQRLLIKKRHIRALQQRETPEE-GWHDLVAKGFIEYIDTEEEETTMISMTINDLIGARH 719
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 720 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 779
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 780 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 839
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 840 GFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 899
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKT+PI QD+A QG A+RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 900 DVIIGKTSPIPQDDA-QGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 958
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 959 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIEC 1018
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+LTAMIFLGP
Sbjct: 1019 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGP 1078
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKE
Sbjct: 1079 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKE 1138
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1139 RLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1198
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1199 AIAPRMLT 1206
Score = 166 bits (419), Expect = 1e-37
Identities = 82/86 (95%), Positives = 83/86 (96%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGT
Sbjct: 436 GLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGT 495
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 496 RAGVSQVLNRLTYASTLSHLRRLNSP 521
>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
brachyantha]
Length = 1184
Score = 1275 bits (3299), Expect = 0.0
Identities = 625/668 (93%), Positives = 647/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KI
Sbjct: 507 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKI 566
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHRNP+LLVKTLR+LRRQ+DVNTEVGV+RDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 567 FVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIV 626
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
E QRLLIKKK IRALQQRE+ E+ GWHDLV +G+IEY+D TMISMTINDL+ A
Sbjct: 627 ENQRLLIKKKHIRALQQRETPEE-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVNARH 685
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 686 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 745
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 746 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 805
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 806 GFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 865
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKT+PI QD+A QG A+RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 866 DVIIGKTSPIPQDDA-QGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 924
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 925 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIEC 984
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+L+AMIFLGP
Sbjct: 985 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGP 1044
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKE
Sbjct: 1045 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKE 1104
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1105 RLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1164
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1165 AIAPRMLT 1172
Score = 166 bits (419), Expect = 1e-37
Identities = 82/86 (95%), Positives = 83/86 (96%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGT
Sbjct: 402 GLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGT 461
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 462 RAGVSQVLNRLTYASTLSHLRRLNSP 487
>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125545063|gb|EAY91202.1| hypothetical protein
OsI_12811 [Oryza sativa Indica Group]
Length = 1222
Score = 1275 bits (3299), Expect = 0.0
Identities = 626/668 (93%), Positives = 647/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KI
Sbjct: 545 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKI 604
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVGIHRNP+LLVKTLR+LRRQ+DVNTEVGV+RDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 605 FVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIV 664
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
E QRLLIKK+ IRALQQRE+ E+ GWHDLV +G+IEY+D TMISMTINDLI A
Sbjct: 665 ENQRLLIKKRHIRALQQRETPEE-GWHDLVAKGFIEYIDTEEEETTMISMTINDLIGARH 723
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 724 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 783
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 784 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 843
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 844 GFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 903
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKT+PI QD+A QG A+RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 904 DVIIGKTSPIPQDDA-QGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 962
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 963 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIEC 1022
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+LTAMIFLGP
Sbjct: 1023 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGP 1082
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKE
Sbjct: 1083 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKE 1142
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1143 RLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1202
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1203 AIAPRMLT 1210
Score = 166 bits (419), Expect = 1e-37
Identities = 82/86 (95%), Positives = 83/86 (96%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGT
Sbjct: 440 GLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGT 499
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 500 RAGVSQVLNRLTYASTLSHLRRLNSP 525
>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
polymerase family protein isoform 1 [Theobroma cacao]
Length = 1189
Score = 1275 bits (3298), Expect = 0.0
Identities = 624/668 (93%), Positives = 646/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 511 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 570
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVG+HRNP++LV TLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 571 FVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 630
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKKKDI ALQQRES ED GWHDLV +G+IEY+D TMISMTINDL+ A
Sbjct: 631 EKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARV 690
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 691 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 750
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 751 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 810
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 811 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGE 870
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPI+Q+EA QG ASRY+RRDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+R
Sbjct: 871 DVIIGKTTPISQEEA-QGQASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVR 929
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 930 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 989
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRL+AMIFLGP
Sbjct: 990 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLSAMIFLGP 1049
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1050 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1109
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQELMAM
Sbjct: 1110 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAM 1169
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1170 AIAPRMLT 1177
Score = 169 bits (428), Expect = 1e-38
Identities = 84/86 (97%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 406 GLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 465
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 466 RAGVSQVLNRLTYASTLSHLRRLNSP 491
>ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|823234175|ref|XP_012449723.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|728847618|gb|KHG27061.1| DNA-directed RNA
polymerase II subunit RPB2 [Gossypium arboreum]
gi|763801668|gb|KJB68623.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
gi|763801669|gb|KJB68624.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
Length = 1189
Score = 1273 bits (3295), Expect = 0.0
Identities = 623/668 (93%), Positives = 645/668 (96%)
Frame = -1
Query: 2312 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 2133
MMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKI
Sbjct: 511 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 570
Query: 2132 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 1953
FVNGCWVG+HRNP++LV TLR+LRR+VDVNTEVGV+RDI+LKELR+YTDYGRCSRPLFIV
Sbjct: 571 FVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 630
Query: 1952 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLITAST 1773
EKQRLLIKKKDI ALQQRE+ ED GWHDLV +G+IEY+D TMISMTINDL+ A
Sbjct: 631 EKQRLLIKKKDIHALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARI 690
Query: 1772 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 1593
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R
Sbjct: 691 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 750
Query: 1592 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 1413
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 751 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 810
Query: 1412 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 1233
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R TMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 811 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATTMGMRHGSYDKLDDDGLAPPGTRVSGE 870
Query: 1232 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 1053
DVIIGKTTPI+Q+EA QG ASRY++RDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+R
Sbjct: 871 DVIIGKTTPISQEEA-QGQASRYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVR 929
Query: 1052 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIEC 873
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC
Sbjct: 930 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 989
Query: 872 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 693
IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP
Sbjct: 990 IMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1049
Query: 692 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 513
TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE
Sbjct: 1050 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 1109
Query: 512 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 333
RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM
Sbjct: 1110 RLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1169
Query: 332 AIAPRMLT 309
AIAPRMLT
Sbjct: 1170 AIAPRMLT 1177
Score = 169 bits (428), Expect = 1e-38
Identities = 84/86 (97%), Positives = 84/86 (97%)
Frame = -3
Query: 2571 GLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 2392
GLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT
Sbjct: 406 GLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 465
Query: 2391 RAGVSQVLNRLTYASTLSHLRRLNSP 2314
RAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 466 RAGVSQVLNRLTYASTLSHLRRLNSP 491