BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00001042
         (2241 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010275998.1| PREDICTED: uncharacterized protein LOC104610...   502   e-139
ref|XP_010267732.1| PREDICTED: uncharacterized protein LOC104604...   447   e-122
ref|XP_010267731.1| PREDICTED: uncharacterized protein LOC104604...   447   e-122
ref|XP_010655357.1| PREDICTED: polyadenylation and cleavage fact...   417   e-113
emb|CBI23183.3| unnamed protein product [Vitis vinifera]              407   e-110
ref|XP_010931816.1| PREDICTED: polyadenylation and cleavage fact...   391   e-105
ref|XP_011037706.1| PREDICTED: polyadenylation and cleavage fact...   388   e-104
ref|XP_002316604.2| pre-mRNA cleavage complex-related family pro...   385   e-104
ref|XP_011037705.1| PREDICTED: polyadenylation and cleavage fact...   377   e-101
ref|XP_011037702.1| PREDICTED: polyadenylation and cleavage fact...   377   e-101
ref|XP_002518518.1| conserved hypothetical protein [Ricinus comm...   377   e-101
ref|XP_012091393.1| PREDICTED: polyadenylation and cleavage fact...   377   e-101
ref|XP_007026008.1| PCF11P-similar protein 4, putative isoform 1...   374   e-100
gb|KDO75520.1| hypothetical protein CISIN_1g003277mg [Citrus sin...   370   4e-99
ref|XP_010909642.1| PREDICTED: polyadenylation and cleavage fact...   369   9e-99
gb|KHG24664.1| Pre-mRNA cleavage complex 2 Pcf11 [Gossypium arbo...   350   3e-93
ref|XP_012450329.1| PREDICTED: polyadenylation and cleavage fact...   350   4e-93
gb|KJB67158.1| hypothetical protein B456_010G178200 [Gossypium r...   350   4e-93
gb|KJB67157.1| hypothetical protein B456_010G178200 [Gossypium r...   350   4e-93
ref|XP_012450328.1| PREDICTED: polyadenylation and cleavage fact...   350   4e-93

>ref|XP_010275998.1| PREDICTED: uncharacterized protein LOC104610875 isoform X1 [Nelumbo
            nucifera]
          Length = 1071

 Score =  502 bits (1292), Expect = e-139
 Identities = 315/703 (44%), Positives = 392/703 (55%), Gaps = 48/703 (6%)
 Frame = -2

Query: 2150 NSDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPS 1971
            +++EIVR+YE+VLSEL  NSKP+ITELTIIAGEQREH EGIADAIC RIIEVP E KLPS
Sbjct: 76   STEEIVRLYEVVLSELTFNSKPIITELTIIAGEQREHGEGIADAICARIIEVPVEQKLPS 135

Query: 1970 LYLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRK 1791
            LYLLDSIVKNIG EY   F+SRLPEVF EAYRQV P  +PAMRHLFGTWSTVFP  VLRK
Sbjct: 136  LYLLDSIVKNIGREYARYFASRLPEVFCEAYRQVQPNLYPAMRHLFGTWSTVFPTKVLRK 195

Query: 1790 IGVELQFSSLGNHQ-XXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDVHN 1614
            I VELQFS   N Q                  +HGIHVNPKYLE RRQ EH +  ND+  
Sbjct: 196  IEVELQFSPASNQQSTSLTAPRSSEESPPPRPSHGIHVNPKYLE-RRQIEHSSFANDIQQ 254

Query: 1613 TKGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPN 1434
             +G SS+LQ YG+KP+ G+ E+D+D+ E I    G+Q   S G   R S  G    + P 
Sbjct: 255  GRGSSSSLQIYGRKPASGYVEFDLDHDEGISPHFGVQGLDSQGAAIRASSVGAAERLLPT 314

Query: 1433 FXXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSKRNGEWN 1254
                                ++DG  I NSP R  E ASP HSG +Y   + +  +GE +
Sbjct: 315  KARLARSSSPARIGARSLPPTNDGFAINNSPRRVVEGASPSHSGSEYGPGKATDGDGEKS 374

Query: 1253 DRQMKHLVDHTRPPVVPNPNIEFDRQRPRALIDAYGNYRGESKFNGKPLKIEPLDVNGIN 1074
            +   K            NP+   D+QRPRALIDAYGNYRG++  NGKPLK+E LD+NGIN
Sbjct: 375  EWWFK--CQQMETSGTYNPSNGCDQQRPRALIDAYGNYRGKNTLNGKPLKVERLDINGIN 432

Query: 1073 SDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSSAREGFGRSSDSISEP 894
            S   ++RWQNTEEEEYVWEDMSPTL DRSR ++L+P   PL + S R G  R S +I E 
Sbjct: 433  SKEVSKRWQNTEEEEYVWEDMSPTLTDRSRGNDLMPFNPPLGSLSRRTGLERPSTAILES 492

Query: 893  DYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNLNNATQIQGSKY 714
            D+R G WP Q QL  +D+ +  SGDG  I  S ++   G  SL      N ++ +Q S +
Sbjct: 493  DFRRGNWPNQVQLSTMDDAAFISGDGVSILGSGHV-TMGNNSLRCPQTQNESSHVQSSHH 551

Query: 713  SREPWNV--HPXXXXXXXXXSKVSGNANQMSFPSIGSALSGGQRVPSTMD---------- 570
            S+EP N               K  G A QMSFP+ G   S  +++PS +D          
Sbjct: 552  SQEPQNFPHQFPQSSQEHLDLKARGRAVQMSFPAAGVVPSAIKKMPSQVDNFLDTDAQFQ 611

Query: 569  -----------------NTEVLSS-MTHTTLVEKHFGQN-FHSPLM----------ASQG 477
                             N E LS+ M   + ++KH GQ    +PL+              
Sbjct: 612  RFSGVVSRMGSSNRDTMNVEALSTMMPPASALQKHRGQRPSLAPLVWPPVNVPKSHPPPP 671

Query: 476  LSQTTHQNQIKGQFGLLDANRTQMNQSVKFDS-----FERKAGTVENMSQLPNQLSGSVF 312
            LS    QNQIK Q  ++D +R   N+S+          ER   T   + Q PNQ +G + 
Sbjct: 672  LSVLPQQNQIKSQSNIMDISRIP-NKSLTLPGQHLGVIERNTLTPTKLLQFPNQQAGLIS 730

Query: 311  SNNHRQGPVNPLQSQVLGSM-AQENFVTPINAHVPSPLPPQPM 186
             N   QG  + L +Q L S  AQENFV    A + +    QP+
Sbjct: 731  LNQRSQGQASHLPAQPLMSQNAQENFVPSAVAQMSTHKMEQPL 773


>ref|XP_010267732.1| PREDICTED: uncharacterized protein LOC104604863 isoform X2 [Nelumbo
            nucifera]
          Length = 1049

 Score =  447 bits (1149), Expect = e-122
 Identities = 296/739 (40%), Positives = 382/739 (51%), Gaps = 49/739 (6%)
 Frame = -2

Query: 2150 NSDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPS 1971
            +++E VR+YE+VLSEL  NSKP+ITELTIIAGEQREH EGIA AIC  IIEVP E KLPS
Sbjct: 77   STEETVRLYEVVLSELTFNSKPIITELTIIAGEQREHGEGIAGAICAHIIEVPVEQKLPS 136

Query: 1970 LYLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRK 1791
            LYLLDSIVKNIG EYV  FSSRLPEVF EAYRQVHP   PAMRHLFGTWS +FP  VLR 
Sbjct: 137  LYLLDSIVKNIGREYVMYFSSRLPEVFCEAYRQVHPNLCPAMRHLFGTWSAIFPAKVLRT 196

Query: 1790 IGVELQFSSLG-NHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDVHN 1614
            I +ELQFS    N                   +HGIHVNPKYLE            +V  
Sbjct: 197  IEIELQFSPRAKNQSSGLKAVRSSEDSPSPRSSHGIHVNPKYLE------------EVQR 244

Query: 1613 TKGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPN 1434
             +G+SS+LQ YGQKP++ +GE+D D+ E I  +V +QR  S G    +S+   + L+ P 
Sbjct: 245  GRGISSSLQIYGQKPTIEYGEHDSDHGEVISPRVVVQRLDSQGASTHSSVGSAERLL-PT 303

Query: 1433 FXXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSKRNGEWN 1254
                              S S+DG  ++NSP +  +R SP HSG  Y   R++  +GE +
Sbjct: 304  KIRLTRPSSPTIGPARSLSPSNDGFSVDNSPRKVVDRVSPSHSGSIYGPRRMTDNDGERS 363

Query: 1253 DRQMKHLVDHTRPPVVPNPNIEFDRQ-RPRALIDAYGNYRGESKFNGKPLKIEPLDVNGI 1077
             + +KH       P   +  +E        + IDA GN+ G++  N K   I+ LDVNGI
Sbjct: 364  YQWLKHW------PSKKDQKVETSSMYNIFSNIDACGNFLGKNVLNEKHSIIKQLDVNGI 417

Query: 1076 NSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSSAREGFGRSSDSISE 897
             S     RWQNTEEEEY+WEDMSPTLADR+R +++ P   P  + S R G GR S +I E
Sbjct: 418  KSKEAATRWQNTEEEEYIWEDMSPTLADRNRGNDIRPQNSPFSSISRRNGLGRPSAAILE 477

Query: 896  PDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNLNNATQIQGSK 717
            PD++ G WP Q      D+++ F+GD   I  S +    G K L G G  N +TQ+Q S 
Sbjct: 478  PDFKKGNWPDQVHFSVPDDSAAFAGDVVSILGSGHF-SMGKKPLSGPGIRNESTQVQCSH 536

Query: 716  YSREPWN-VHP-XXXXXXXXXSKVSGNANQMSFPSIGSALSGGQRVPSTMD--------- 570
            Y  EP N +H            K  G A QM+FP+        Q VPS +D         
Sbjct: 537  YPHEPRNFLHRFPQPLQEHLDPKARGTAVQMTFPASRIVAPASQNVPSQIDKFPDADVQP 596

Query: 569  --------------NTEVLSSMTHTTLVEKHFGQ--NFHSPLMASQGLSQT--------- 465
                          N EV S++   + + KH  Q  +   P+     +S++         
Sbjct: 597  PRFSRIGSSGATSLNVEVPSAVMPASTLLKHVEQRPSLAPPIWPLVNVSKSHQPCLLPVI 656

Query: 464  THQNQIKGQFGLLDANRTQMNQSVKFD---SFERKAGTVENMSQLPNQLSGSVFSNNHRQ 294
              QNQIK QF ++D N     Q  K       +   G   N+ Q  NQ +G +  N   Q
Sbjct: 657  PQQNQIKSQFDIMDVNNPVKGQIPKKPLTLPVQHLDGIERNVLQFANQQAGLISLNQQYQ 716

Query: 293  GPVNPLQSQVLGSM-AQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXXGVMPLNRLSG 117
            G  + LQ Q+L S  AQEN V P  + + S +  Q +               +  N + G
Sbjct: 717  GHASLLQQQLLLSQNAQENLVPPATSRISSHMMEQFLSNGHMRQGHGPVVSSILSNSIPG 776

Query: 116  IPP-------IPNTSFQVQ 81
            IPP       I NT F +Q
Sbjct: 777  IPPSSVTSHGISNTRFHLQ 795


>ref|XP_010267731.1| PREDICTED: uncharacterized protein LOC104604863 isoform X1 [Nelumbo
            nucifera]
          Length = 1058

 Score =  447 bits (1149), Expect = e-122
 Identities = 296/739 (40%), Positives = 382/739 (51%), Gaps = 49/739 (6%)
 Frame = -2

Query: 2150 NSDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPS 1971
            +++E VR+YE+VLSEL  NSKP+ITELTIIAGEQREH EGIA AIC  IIEVP E KLPS
Sbjct: 77   STEETVRLYEVVLSELTFNSKPIITELTIIAGEQREHGEGIAGAICAHIIEVPVEQKLPS 136

Query: 1970 LYLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRK 1791
            LYLLDSIVKNIG EYV  FSSRLPEVF EAYRQVHP   PAMRHLFGTWS +FP  VLR 
Sbjct: 137  LYLLDSIVKNIGREYVMYFSSRLPEVFCEAYRQVHPNLCPAMRHLFGTWSAIFPAKVLRT 196

Query: 1790 IGVELQFSSLG-NHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDVHN 1614
            I +ELQFS    N                   +HGIHVNPKYLE            +V  
Sbjct: 197  IEIELQFSPRAKNQSSGLKAVRSSEDSPSPRSSHGIHVNPKYLE------------EVQR 244

Query: 1613 TKGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPN 1434
             +G+SS+LQ YGQKP++ +GE+D D+ E I  +V +QR  S G    +S+   + L+ P 
Sbjct: 245  GRGISSSLQIYGQKPTIEYGEHDSDHGEVISPRVVVQRLDSQGASTHSSVGSAERLL-PT 303

Query: 1433 FXXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSKRNGEWN 1254
                              S S+DG  ++NSP +  +R SP HSG  Y   R++  +GE +
Sbjct: 304  KIRLTRPSSPTIGPARSLSPSNDGFSVDNSPRKVVDRVSPSHSGSIYGPRRMTDNDGERS 363

Query: 1253 DRQMKHLVDHTRPPVVPNPNIEFDRQ-RPRALIDAYGNYRGESKFNGKPLKIEPLDVNGI 1077
             + +KH       P   +  +E        + IDA GN+ G++  N K   I+ LDVNGI
Sbjct: 364  YQWLKHW------PSKKDQKVETSSMYNIFSNIDACGNFLGKNVLNEKHSIIKQLDVNGI 417

Query: 1076 NSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSSAREGFGRSSDSISE 897
             S     RWQNTEEEEY+WEDMSPTLADR+R +++ P   P  + S R G GR S +I E
Sbjct: 418  KSKEAATRWQNTEEEEYIWEDMSPTLADRNRGNDIRPQNSPFSSISRRNGLGRPSAAILE 477

Query: 896  PDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNLNNATQIQGSK 717
            PD++ G WP Q      D+++ F+GD   I  S +    G K L G G  N +TQ+Q S 
Sbjct: 478  PDFKKGNWPDQVHFSVPDDSAAFAGDVVSILGSGHF-SMGKKPLSGPGIRNESTQVQCSH 536

Query: 716  YSREPWN-VHP-XXXXXXXXXSKVSGNANQMSFPSIGSALSGGQRVPSTMD--------- 570
            Y  EP N +H            K  G A QM+FP+        Q VPS +D         
Sbjct: 537  YPHEPRNFLHRFPQPLQEHLDPKARGTAVQMTFPASRIVAPASQNVPSQIDKFPDADVQP 596

Query: 569  --------------NTEVLSSMTHTTLVEKHFGQ--NFHSPLMASQGLSQT--------- 465
                          N EV S++   + + KH  Q  +   P+     +S++         
Sbjct: 597  PRFSRIGSSGATSLNVEVPSAVMPASTLLKHVEQRPSLAPPIWPLVNVSKSHQPCLLPVI 656

Query: 464  THQNQIKGQFGLLDANRTQMNQSVKFD---SFERKAGTVENMSQLPNQLSGSVFSNNHRQ 294
              QNQIK QF ++D N     Q  K       +   G   N+ Q  NQ +G +  N   Q
Sbjct: 657  PQQNQIKSQFDIMDVNNPVKGQIPKKPLTLPVQHLDGIERNVLQFANQQAGLISLNQQYQ 716

Query: 293  GPVNPLQSQVLGSM-AQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXXGVMPLNRLSG 117
            G  + LQ Q+L S  AQEN V P  + + S +  Q +               +  N + G
Sbjct: 717  GHASLLQQQLLLSQNAQENLVPPATSRISSHMMEQFLSNGHMRQGHGPVVSSILSNSIPG 776

Query: 116  IPP-------IPNTSFQVQ 81
            IPP       I NT F +Q
Sbjct: 777  IPPSSVTSHGISNTRFHLQ 795


>ref|XP_010655357.1| PREDICTED: polyadenylation and cleavage factor homolog 4 [Vitis
            vinifera]
          Length = 1046

 Score =  417 bits (1072), Expect = e-113
 Identities = 281/725 (38%), Positives = 369/725 (50%), Gaps = 40/725 (5%)
 Frame = -2

Query: 2147 SDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPSL 1968
            ++EIVR+YE+VLSEL  NSKP+IT+LTIIAG+ +EHA+GIADAIC RI+EV  E KLPSL
Sbjct: 76   TEEIVRLYEIVLSELIFNSKPIITDLTIIAGDHKEHADGIADAICARIVEVSVEQKLPSL 135

Query: 1967 YLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRKI 1788
            YLLDSIVKNIG +Y+  FSSRLPEVF EAYRQVHP  + AMRHLFGTWS VFPP VLRKI
Sbjct: 136  YLLDSIVKNIGRDYIKHFSSRLPEVFCEAYRQVHPNLYTAMRHLFGTWSAVFPPSVLRKI 195

Query: 1787 GVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDVHNTK 1608
              +LQFS   N+Q                 TH IHVNPKYLEAR Q+EH    +++ +++
Sbjct: 196  EAQLQFSPTLNNQ--SSGMASLRASESPRPTHSIHVNPKYLEARHQFEHSPVDSNMQHSR 253

Query: 1607 GVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSIT-GVQGLIAPNF 1431
            G SSTL+ YGQKP++G+ EYD  ++E I  Q   QR  S G   RT    G   L+  + 
Sbjct: 254  GTSSTLKVYGQKPAIGYDEYDSGHTEVISSQARAQRLNSTGSVGRTPFALGADKLLPSST 313

Query: 1430 XXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSKRNGEWND 1251
                             S   +   ++NSP R  ERASP H GF+Y   R   R+ E +D
Sbjct: 314  ARVAKSTSPRIGTAGSSSPPAEKFSMDNSPRRVVERASPSHRGFEYGLVRSMGRDEETSD 373

Query: 1250 RQMKHLV-DHTRPPVVPNPNIEFDRQRPRALIDAYGNYRGESKFNGKPLKIEPLDVNGIN 1074
            RQ KH   D        N +   +RQ  RALIDAYGN RG+   N KP K+  LD+NG +
Sbjct: 374  RQRKHWSNDRFETSAAHNLSNGRERQGLRALIDAYGNDRGQRTLNDKPPKVGHLDMNGTD 433

Query: 1073 SDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKL-PLRNSSAREGFGRSSDSISE 897
            +    + WQNTEEEEY WEDM+PTLA+R + + ++ S + P  +   R G G    +  E
Sbjct: 434  NKVPKKAWQNTEEEEYDWEDMNPTLANRRQCNNILQSSVSPFGSFRTRPGSGALGAAPLE 493

Query: 896  PDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNLNNATQIQGSK 717
             D+    W  Q QL  VD++   + D   +  + +LG  G+ S  GFG   N T+  GS 
Sbjct: 494  SDFNRSKWSGQAQLSMVDDSPVIAED---VVPTTSLG-RGSISKPGFG---NETKFHGSH 546

Query: 716  YSREPWNVHPXXXXXXXXXSKVSGNANQMSFPSIGSALSGG------------------- 594
            Y +E WN+               G     + P +GS +S                     
Sbjct: 547  YPQESWNLVHRVPQSSQHNRNAKGRGKNFNTPFLGSGISSSAAETISPLISNIPDADAQL 606

Query: 593  QRVPSTMD----------NTEVLSSMTHTTL-----VEKHFGQNFHSPLMASQGLSQTTH 459
            +R+P+             N EV S+    +      V  H     H P +    LS    
Sbjct: 607  RRLPTVASRMGSSSLNSMNVEVQSAAAPASTGMWPPVNVH---KTHLPPL----LSNLPQ 659

Query: 458  QNQIKGQFGLLDANRTQMNQSVKFDSFERKAGTVENMSQLPNQLSGSVFSNNHRQGPVNP 279
              QI+ QF L++A    +NQ      F  +  +   + Q+ N+ +GS+  N   Q  V  
Sbjct: 660  TKQIRNQFNLMNATTAVVNQDPNKSLFLPELDS--KLPQMANRQAGSIPLNGKNQTQVTR 717

Query: 278  LQSQVLGSMAQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXXGVMPLNRLSGIP---P 108
            LQ Q L      NFV    A V S     P+               + LN + G+    P
Sbjct: 718  LQPQFLPQETHGNFVPSTTAPVSSYSVAPPLNPGYTPQGHAAATSTILLNPVPGVHSSIP 777

Query: 107  IPNTS 93
            I N S
Sbjct: 778  IHNIS 782


>emb|CBI23183.3| unnamed protein product [Vitis vinifera]
          Length = 1003

 Score =  407 bits (1045), Expect = e-110
 Identities = 270/691 (39%), Positives = 356/691 (51%), Gaps = 6/691 (0%)
 Frame = -2

Query: 2147 SDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPSL 1968
            ++EIVR+YE+VLSEL  NSKP+IT+LTIIAG+ +EHA+GIADAIC RI+EV  E KLPSL
Sbjct: 116  TEEIVRLYEIVLSELIFNSKPIITDLTIIAGDHKEHADGIADAICARIVEVSVEQKLPSL 175

Query: 1967 YLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRKI 1788
            YLLDSIVKNIG +Y+  FSSRLPEVF EAYRQVHP  + AMRHLFGTWS VFPP VLRKI
Sbjct: 176  YLLDSIVKNIGRDYIKHFSSRLPEVFCEAYRQVHPNLYTAMRHLFGTWSAVFPPSVLRKI 235

Query: 1787 GVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDVHNTK 1608
              +LQFS   N+Q                 TH IHVNPKYLEAR Q+EH    +++ +++
Sbjct: 236  EAQLQFSPTLNNQ--SSGMASLRASESPRPTHSIHVNPKYLEARHQFEHSPVDSNMQHSR 293

Query: 1607 GVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSIT-GVQGLIAPNF 1431
            G SSTL+ YGQKP++G+ EYD  ++E I  Q   QR  S G   RT    G   L+  + 
Sbjct: 294  GTSSTLKVYGQKPAIGYDEYDSGHTEVISSQARAQRLNSTGSVGRTPFALGADKLLPSST 353

Query: 1430 XXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSKRNGEWND 1251
                             S   +   ++NSP R  ERASP H GF+Y   R   R+ E +D
Sbjct: 354  ARVAKSTSPRIGTAGSSSPPAEKFSMDNSPRRVVERASPSHRGFEYGLVRSMGRDEETSD 413

Query: 1250 RQMKHLV-DHTRPPVVPNPNIEFDRQRPRALIDAYGNYRGESKFNGKPLKIEPLDVNGIN 1074
            RQ KH   D        N +   +RQ  RALIDAYGN RG+   N KP K+  LD+NG +
Sbjct: 414  RQRKHWSNDRFETSAAHNLSNGRERQGLRALIDAYGNDRGQRTLNDKPPKVGHLDMNGTD 473

Query: 1073 SDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKL-PLRNSSAREGFGRSSDSISE 897
            +    + WQNTEEEEY WEDM+PTLA+R + + ++ S + P  +   R G G    +  E
Sbjct: 474  NKVPKKAWQNTEEEEYDWEDMNPTLANRRQCNNILQSSVSPFGSFRTRPGSGALGAAPLE 533

Query: 896  PDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNLNNATQIQGSK 717
             D+    W  Q QL  VD++   + D   +  + +LG  G+ S  GFG   N T+  GS 
Sbjct: 534  SDFNRSKWSGQAQLSMVDDSPVIAED---VVPTTSLG-RGSISKPGFG---NETKFHGSH 586

Query: 716  YSREPWNVHPXXXXXXXXXSKVSGNANQMSFPSIGSALSGGQRVPSTMDNTEVLSSMTHT 537
            Y +E WN+               G     + P +GS +S            E +S +   
Sbjct: 587  YPQESWNLVHRVPQSSQHNRNAKGRGKNFNTPFLGSGISSSA--------AETISPLISN 638

Query: 536  TLVEKHFGQNFHSPLMASQGLSQTTHQNQIKGQFGLLDANRTQMNQSVKFDSFERKAGTV 357
              +     Q    P +AS+  S + +   ++  F              + DS        
Sbjct: 639  --IPDADAQLRRLPTVASRMGSSSLNSMNVESLF------------LPELDS-------- 676

Query: 356  ENMSQLPNQLSGSVFSNNHRQGPVNPLQSQVLGSMAQENFVTPINAHVPSPLPPQPMXXX 177
              + Q+ N+ +GS+  N   Q  V  LQ Q L      NFV    A V S     P+   
Sbjct: 677  -KLPQMANRQAGSIPLNGKNQTQVTRLQPQFLPQETHGNFVPSTTAPVSSYSVAPPLNPG 735

Query: 176  XXXXXXXXXXGVMPLNRLSGIP---PIPNTS 93
                        + LN + G+    PI N S
Sbjct: 736  YTPQGHAAATSTILLNPVPGVHSSIPIHNIS 766


>ref|XP_010931816.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
            [Elaeis guineensis] gi|743820578|ref|XP_010931817.1|
            PREDICTED: polyadenylation and cleavage factor homolog 4
            isoform X1 [Elaeis guineensis]
          Length = 1068

 Score =  391 bits (1005), Expect = e-105
 Identities = 283/772 (36%), Positives = 376/772 (48%), Gaps = 86/772 (11%)
 Frame = -2

Query: 2141 EIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPSLYL 1962
            EIVR+YE +LSEL  NSKP+ITELTIIAG+  + AEGIADAIC R++EVP + KLPSLYL
Sbjct: 70   EIVRLYEELLSELTFNSKPIITELTIIAGQHPQLAEGIADAICARVLEVPLDQKLPSLYL 129

Query: 1961 LDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRKIGV 1782
            LDSIVKNIG EYV  F++RLP+VF EAY QVHP Q+PAMRHLFGTWS VFP  VLRKI  
Sbjct: 130  LDSIVKNIGREYVRYFAARLPKVFCEAYNQVHPSQYPAMRHLFGTWSQVFPLSVLRKIED 189

Query: 1781 ELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAI--------- 1629
            ELQFS   N Q                 +HGIHVNPKYLEAR  ++H T +         
Sbjct: 190  ELQFSPSKNSQSSGITSMRQSESPSPRPSHGIHVNPKYLEARHLFKHSTTMRAVESHDKA 249

Query: 1628 ----------------------------NDVHNTKGVSSTLQRYGQKPSVGHGEYDVDNS 1533
                                        +D+ + +GVSS+LQ YGQK S+   EYD+D+ 
Sbjct: 250  HMTDFDGEQMEGNASEGLKGWSGGSPKFHDIEHARGVSSSLQVYGQKSSLQCNEYDIDHP 309

Query: 1532 ESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPNFXXXXXXXXXXXXXXXXXSAS----DD 1365
            E +P + GI R GSP L   T  T +  +  P                     S     D
Sbjct: 310  EVLPSRRGIVRTGSP-LTAATRATSIVEVEGPTRHSKSKFSRFSPPPIIGPRKSVSPPTD 368

Query: 1364 GNRIENSPSRAFERASPLHSGFDYASDRLSKRNGEWNDRQMKHLVDHTRPPVVPNPNIEF 1185
                  SP R  +R SP HS     +++  +    W         +  +  +  + N  +
Sbjct: 369  RFSRRTSPRRVLKRTSPSHSEAGRGTNQNGRFERSW---PCDDATEQVKSSMAFSLNSGY 425

Query: 1184 DRQRPRALIDAYGNYRGESKFNGKPLKIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSP 1005
             +Q  R LIDAYGN RG+S    K  K++ LDVNGI S+A TR+W+N+EEEEYVWEDMSP
Sbjct: 426  AKQHSRDLIDAYGNCRGKSTSLEKLPKVQRLDVNGIASEAATRKWKNSEEEEYVWEDMSP 485

Query: 1004 TLADRSRTDELIPSKLPLRNSSAREGFGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFS 825
            TL+DRSR     P      N S R G  R   S+ E D+    WP Q QLPA+D+ + ++
Sbjct: 486  TLSDRSRRKSQPPLGPSTGNLSIRGGLTRPDASLLEHDFGRHSWPGQAQLPAIDDPA-YT 544

Query: 824  GDGGLIFSSNNLGDTGAKSLGGFGNLNN-ATQIQGSKYSREPWNVHP--XXXXXXXXXSK 654
             +  + F  N  G    K L G  N +      QGS ++ EP  +              +
Sbjct: 545  VEDRIHFFGNAHGSMNRKYLDGIVNQHKLLADSQGSHHTHEPRKLPYMFPQSSQQSLSPR 604

Query: 653  VSGNANQMSFPSIGSALSGGQRVPSTMDNT-------EVLSSM------THTTLVEKHFG 513
            + G A+QM   + G   S G ++P+  +NT       + LSS         T+ +E++  
Sbjct: 605  LRGRASQMPVAASGITPSIGNKLPNLYENTPDMEVAFQTLSSSHSDPFNVDTSTLERYLP 664

Query: 512  QNFHSPLMA---------SQG---LSQTTHQNQIKGQFGLLDANRTQMNQSVKF------ 387
            Q  HSP  A         SQ    L    +Q Q K  F  L+AN+  +NQ  +       
Sbjct: 665  QRPHSPPHAPTVWPPVHKSQPLPLLPVPPNQKQCKSPFDFLEANKPLLNQGPESSFYFSQ 724

Query: 386  ---DSFERKAGTVENMSQLPNQLSGSVFSN--NHRQGPVNPLQSQVLGSMAQENFVTPIN 222
               D+ +RK      + Q+P Q  G    N  +H +G    +Q+Q     A    +    
Sbjct: 725  HQNDTADRKNLNSNKLLQVPYQQPGLALENRQSHERGTTMQIQAQ----EAHRGLIPSAP 780

Query: 221  AHVPSPLPPQPMXXXXXXXXXXXXXGVMPLNRLSGIPP------IPNTSFQV 84
            A + S L  QP+              V+P N LS +P       +P+TS  V
Sbjct: 781  AQLSSHLVAQPLNHVQSSGQGVAMVSVLP-NPLSRLPSSVAMNNMPDTSLLV 831


>ref|XP_011037706.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X5 [Populus euphratica]
          Length = 1035

 Score =  388 bits (997), Expect = e-104
 Identities = 274/733 (37%), Positives = 372/733 (50%), Gaps = 47/733 (6%)
 Frame = -2

Query: 2159 ALLNSDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELK 1980
            A L+ +++V IYE VL+EL  NSKP+IT+LTIIAGEQREH EGIAD +C RI+E P + K
Sbjct: 64   ASLSMEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPVDQK 123

Query: 1979 LPSLYLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPV 1800
            LPSLYLLDSIVKNIG EY+  FSSRLPEVF EAYRQV P  +P+MRHLFGTWS+VFP  V
Sbjct: 124  LPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFPSSV 183

Query: 1799 LRKIGVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDV 1620
            L KI  +L FS   N+Q                  HGIHVNPKYL   RQ +H TA N+V
Sbjct: 184  LHKIETQLDFSPQVNNQ--SSSLTSFRASESPRPPHGIHVNPKYL---RQLDHSTADNNV 238

Query: 1619 HNTKGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRR----GSPGLDPRTSITGVQ 1452
             +TKG +S L+ YG+KP+VG+ EY+ D +E+I  QVG+ R     GS  L P ++    +
Sbjct: 239  QHTKG-TSNLKIYGKKPAVGYDEYESDQAEAISSQVGMGRTSLILGSNKLQPSSTSRLAR 297

Query: 1451 GLIAPNFXXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSK 1272
             L+                     S+  D   + NSP R  E  SP    FDY   R   
Sbjct: 298  RLL-----------PLTTGAERPLSSEIDDLAVGNSPRRFVEGLSPSRPLFDYGHSRTIV 346

Query: 1271 RNGEWNDRQMKHLVDHTRPPVVPNPNIE----FDRQRPRALIDAYGNYRGESKFNGKPLK 1104
            R+ E N+ +  +  D       P+         + Q PRALIDAYG+ RG+   + KPL 
Sbjct: 347  RDEEANELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALIDAYGDDRGKRITSSKPLH 406

Query: 1103 IEPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSSA-REG 927
            IE L VNG+++   +R WQNTEEEE+ WEDMSPTL++  RT++ +PS +P   S   R  
Sbjct: 407  IEQLAVNGMHNKVASRSWQNTEEEEFDWEDMSPTLSEHGRTNDFLPSSIPPFGSVVPRPA 466

Query: 926  FGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNL 747
            FGR S   +E D R+    + P + +VD +SN + +   I  S   G      + GF   
Sbjct: 467  FGRLSAIHAESDIRSNRSSLAP-MASVDGSSNIAEEAVSILGS---GRGSTSKIPGFRTE 522

Query: 746  NNATQIQGSKYSREPWNVHPXXXXXXXXXSKVSGNANQMSFPSIGSALS--GGQRV-PST 576
             N  QI GS++ +E WN  P             G       P  GS +S  GG+   P  
Sbjct: 523  RN--QILGSRHHQEAWN-FPPHIHQSAHLLNSKGRGRDFQMPLSGSGVSSLGGENYSPLA 579

Query: 575  MDNTEVLSSMTHTTLVEKHFGQNFHS------------------PLMASQGLSQTTHQ-- 456
                ++ + +  +  +   +G N  S                  P+ A + L    H+  
Sbjct: 580  EKLPDIDAQLNRSPAIASRWGSNIDSTSSGTWSSVVPPSSGVWPPVNARKSLPPPVHRIF 639

Query: 455  ---NQIKGQFGLLDANRTQMNQSVK---------FDSFERKAGTVENMSQLPNQLSGSVF 312
                Q + QF  ++A+ T +NQ ++         F+ FE K       + + NQ +    
Sbjct: 640  PPPEQSRSQFDPINASSTVINQVLQKGSAMPEQPFNGFENKDYNSMKPTPMSNQHAA--- 696

Query: 311  SNNHRQGPVNPLQSQVLGS-MAQENF-VTPINAHVPSPLPPQPMXXXXXXXXXXXXXGVM 138
             N   Q  VNP Q Q L S   +ENF  + + +  P PL  QP+              ++
Sbjct: 697  LNQQNQAHVNPFQPQQLPSHETRENFHPSGVTSMPPRPL-GQPLNHGYNTHGHSTAISMV 755

Query: 137  PLNRLSGIP-PIP 102
            P N L  +  P+P
Sbjct: 756  PSNALPAVQLPLP 768


>ref|XP_002316604.2| pre-mRNA cleavage complex-related family protein [Populus
            trichocarpa] gi|550327247|gb|EEE97216.2| pre-mRNA
            cleavage complex-related family protein [Populus
            trichocarpa]
          Length = 1031

 Score =  385 bits (990), Expect = e-104
 Identities = 274/700 (39%), Positives = 369/700 (52%), Gaps = 44/700 (6%)
 Frame = -2

Query: 2153 LNSDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLP 1974
            L+++++V IYE VL+EL  NSKP+IT+LTIIAGE REH EGIADA+C RI+EVP +LKLP
Sbjct: 59   LSTEDMVEIYETVLNELTFNSKPIITDLTIIAGELREHGEGIADALCGRIVEVPVDLKLP 118

Query: 1973 SLYLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLR 1794
            SLYLLDSIVKNIG EY+G FSSRLPEVF EAY QV P+ +P+MRHLFGTWS+VFP  VLR
Sbjct: 119  SLYLLDSIVKNIGREYIGYFSSRLPEVFCEAYGQVDPRLYPSMRHLFGTWSSVFPSSVLR 178

Query: 1793 KIGVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDVHN 1614
            KI  +LQ SS  N+Q                 +HGIHVNPKYL   RQ +  +  N+V +
Sbjct: 179  KIETQLQLSSQINNQ--SSSLTSLKASESPRPSHGIHVNPKYL---RQMD-SSRDNNVQH 232

Query: 1613 TKGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRR----GSPGLDPRTSITGVQGL 1446
            TKG +S L+ YG KP+VG+ EY+ D +E I  QVG+ R     GS  L P +S + +   
Sbjct: 233  TKG-TSNLKMYGHKPAVGYDEYETDQAEVISSQVGVDRASLTLGSNKLQP-SSTSRLARR 290

Query: 1445 IAPNFXXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSKRN 1266
            ++P+                  S+  D     NSP R  E  SP H  FDY   R+  R+
Sbjct: 291  LSPS----------TTGAERPSSSEIDDFAAGNSPRRFVEGLSPSHPPFDYGHGRVVVRD 340

Query: 1265 GEWNDRQMKHLVD--HTR-PPVVPNPNIEFDRQRPRALIDAYGNYRGESKFNGKPLKIEP 1095
             E N+ + KH  D  H R      + +   ++Q PRALIDAYG+ RG+   N KPL IE 
Sbjct: 341  DETNELRRKHYSDDNHYRFEASARSLSNGHEQQGPRALIDAYGDDRGKRIPNSKPLHIEQ 400

Query: 1094 LDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSSA-REGFGR 918
            L V G+++    R WQNTEEEE+ WEDMSPTL DR R+++ +P  +P   S   R GFGR
Sbjct: 401  LAVIGMHNKVAPRSWQNTEEEEFDWEDMSPTLLDRGRSNDFLPPSVPPFGSVVPRPGFGR 460

Query: 917  SSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNLNNA 738
             +   ++ D R+    + P +  VD++SN  GD   I  S   G T        G L   
Sbjct: 461  LNAIRADSDIRSNGSSLTP-MALVDDSSNMGGDAVSILGSGR-GSTSKMP----GLLTER 514

Query: 737  TQIQGSKYSREPWNVHPXXXXXXXXXSKVSGNANQMSFPSIGSALS--GGQRV-PSTMDN 567
             QI GS+YS+E  N+ P             G       P  GS +S  GG+   P     
Sbjct: 515  NQISGSRYSQEARNL-PPHIRQPSRLLNAKGRGRDFQMPLSGSGVSSLGGENFNPLVEKL 573

Query: 566  TEVLSSMTHTTLVEKHFGQNFHS------------------PLMASQGLSQTTH-----Q 456
             ++ + +     +    G +  S                  P+   + L    H     +
Sbjct: 574  PDMDAKLVRPPAIASRLGSSIDSNSSGTWSSAVLPLSGAWPPVNVHKSLPPPVHSTFPPE 633

Query: 455  NQIKGQFGLLDANRTQMNQSVK---------FDSFERKAGTVENMSQLPNQLSGSVFSNN 303
             Q + QF  ++ + T  NQ+++         F+SFE K   +   + LPNQ +     N 
Sbjct: 634  KQSRSQFDPVNTSSTVTNQALQKASVMPEQSFNSFESKDYVLMKPTPLPNQHAA---LNQ 690

Query: 302  HRQGPVNPLQSQVLGS-MAQENFVTPINAHVPSPLPPQPM 186
              Q   NP Q + L S  A+ENF    +    + LPP+P+
Sbjct: 691  QNQAHFNPFQPKFLPSHEARENF----HPSGIALLPPRPL 726


>ref|XP_011037705.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X4 [Populus euphratica]
          Length = 1051

 Score =  377 bits (968), Expect = e-101
 Identities = 274/751 (36%), Positives = 372/751 (49%), Gaps = 65/751 (8%)
 Frame = -2

Query: 2159 ALLNSDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELK 1980
            A L+ +++V IYE VL+EL  NSKP+IT+LTIIAGEQREH EGIAD +C RI+E P + K
Sbjct: 64   ASLSMEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPVDQK 123

Query: 1979 LPSLYLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPV 1800
            LPSLYLLDSIVKNIG EY+  FSSRLPEVF EAYRQV P  +P+MRHLFGTWS+VFP  V
Sbjct: 124  LPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFPSSV 183

Query: 1799 LRKIGVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAIN-- 1626
            L KI  +L FS   N+Q                  HGIHVNPKYL   RQ +H TA N  
Sbjct: 184  LHKIETQLDFSPQVNNQ--SSSLTSFRASESPRPPHGIHVNPKYL---RQLDHSTADNTG 238

Query: 1625 ----------------DVHNTKGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRR- 1497
                            +V +TKG +S L+ YG+KP+VG+ EY+ D +E+I  QVG+ R  
Sbjct: 239  WSILTSKAKNVIQSLQNVQHTKG-TSNLKIYGKKPAVGYDEYESDQAEAISSQVGMGRTS 297

Query: 1496 ---GSPGLDPRTSITGVQGLIAPNFXXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFE 1326
               GS  L P ++    + L+                     S+  D   + NSP R  E
Sbjct: 298  LILGSNKLQPSSTSRLARRLL-----------PLTTGAERPLSSEIDDLAVGNSPRRFVE 346

Query: 1325 RASPLHSGFDYASDRLSKRNGEWNDRQMKHLVDHTRPPVVPNPNIE----FDRQRPRALI 1158
              SP    FDY   R   R+ E N+ +  +  D       P+         + Q PRALI
Sbjct: 347  GLSPSRPLFDYGHSRTIVRDEEANELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALI 406

Query: 1157 DAYGNYRGESKFNGKPLKIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTD 978
            DAYG+ RG+   + KPL IE L VNG+++   +R WQNTEEEE+ WEDMSPTL++  RT+
Sbjct: 407  DAYGDDRGKRITSSKPLHIEQLAVNGMHNKVASRSWQNTEEEEFDWEDMSPTLSEHGRTN 466

Query: 977  ELIPSKLPLRNSSA-REGFGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFS 801
            + +PS +P   S   R  FGR S   +E D R+    + P + +VD +SN + +   I  
Sbjct: 467  DFLPSSIPPFGSVVPRPAFGRLSAIHAESDIRSNRSSLAP-MASVDGSSNIAEEAVSILG 525

Query: 800  SNNLGDTGAKSLGGFGNLNNATQIQGSKYSREPWNVHPXXXXXXXXXSKVSGNANQMSFP 621
            S   G      + GF    N  QI GS++ +E WN  P             G       P
Sbjct: 526  S---GRGSTSKIPGFRTERN--QILGSRHHQEAWN-FPPHIHQSAHLLNSKGRGRDFQMP 579

Query: 620  SIGSALS--GGQRV-PSTMDNTEVLSSMTHTTLVEKHFGQNFHS---------------- 498
              GS +S  GG+   P      ++ + +  +  +   +G N  S                
Sbjct: 580  LSGSGVSSLGGENYSPLAEKLPDIDAQLNRSPAIASRWGSNIDSTSSGTWSSVVPPSSGV 639

Query: 497  --PLMASQGLSQTTHQ-----NQIKGQFGLLDANRTQMNQSVK---------FDSFERKA 366
              P+ A + L    H+      Q + QF  ++A+ T +NQ ++         F+ FE K 
Sbjct: 640  WPPVNARKSLPPPVHRIFPPPEQSRSQFDPINASSTVINQVLQKGSAMPEQPFNGFENKD 699

Query: 365  GTVENMSQLPNQLSGSVFSNNHRQGPVNPLQSQVLGS-MAQENF-VTPINAHVPSPLPPQ 192
                  + + NQ +     N   Q  VNP Q Q L S   +ENF  + + +  P PL  Q
Sbjct: 700  YNSMKPTPMSNQHAA---LNQQNQAHVNPFQPQQLPSHETRENFHPSGVTSMPPRPL-GQ 755

Query: 191  PMXXXXXXXXXXXXXGVMPLNRLSGIP-PIP 102
            P+              ++P N L  +  P+P
Sbjct: 756  PLNHGYNTHGHSTAISMVPSNALPAVQLPLP 786


>ref|XP_011037702.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X1 [Populus euphratica] gi|743885952|ref|XP_011037703.1|
            PREDICTED: polyadenylation and cleavage factor homolog
            4-like isoform X2 [Populus euphratica]
            gi|743885954|ref|XP_011037704.1| PREDICTED:
            polyadenylation and cleavage factor homolog 4-like
            isoform X3 [Populus euphratica]
          Length = 1053

 Score =  377 bits (968), Expect = e-101
 Identities = 274/751 (36%), Positives = 372/751 (49%), Gaps = 65/751 (8%)
 Frame = -2

Query: 2159 ALLNSDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELK 1980
            A L+ +++V IYE VL+EL  NSKP+IT+LTIIAGEQREH EGIAD +C RI+E P + K
Sbjct: 64   ASLSMEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPVDQK 123

Query: 1979 LPSLYLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPV 1800
            LPSLYLLDSIVKNIG EY+  FSSRLPEVF EAYRQV P  +P+MRHLFGTWS+VFP  V
Sbjct: 124  LPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFPSSV 183

Query: 1799 LRKIGVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAIN-- 1626
            L KI  +L FS   N+Q                  HGIHVNPKYL   RQ +H TA N  
Sbjct: 184  LHKIETQLDFSPQVNNQ--SSSLTSFRASESPRPPHGIHVNPKYL---RQLDHSTADNTG 238

Query: 1625 ----------------DVHNTKGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRR- 1497
                            +V +TKG +S L+ YG+KP+VG+ EY+ D +E+I  QVG+ R  
Sbjct: 239  WSILTSKAKNVIQSLQNVQHTKG-TSNLKIYGKKPAVGYDEYESDQAEAISSQVGMGRTS 297

Query: 1496 ---GSPGLDPRTSITGVQGLIAPNFXXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFE 1326
               GS  L P ++    + L+                     S+  D   + NSP R  E
Sbjct: 298  LILGSNKLQPSSTSRLARRLL-----------PLTTGAERPLSSEIDDLAVGNSPRRFVE 346

Query: 1325 RASPLHSGFDYASDRLSKRNGEWNDRQMKHLVDHTRPPVVPNPNIE----FDRQRPRALI 1158
              SP    FDY   R   R+ E N+ +  +  D       P+         + Q PRALI
Sbjct: 347  GLSPSRPLFDYGHSRTIVRDEEANELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALI 406

Query: 1157 DAYGNYRGESKFNGKPLKIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTD 978
            DAYG+ RG+   + KPL IE L VNG+++   +R WQNTEEEE+ WEDMSPTL++  RT+
Sbjct: 407  DAYGDDRGKRITSSKPLHIEQLAVNGMHNKVASRSWQNTEEEEFDWEDMSPTLSEHGRTN 466

Query: 977  ELIPSKLPLRNSSA-REGFGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFS 801
            + +PS +P   S   R  FGR S   +E D R+    + P + +VD +SN + +   I  
Sbjct: 467  DFLPSSIPPFGSVVPRPAFGRLSAIHAESDIRSNRSSLAP-MASVDGSSNIAEEAVSILG 525

Query: 800  SNNLGDTGAKSLGGFGNLNNATQIQGSKYSREPWNVHPXXXXXXXXXSKVSGNANQMSFP 621
            S   G      + GF    N  QI GS++ +E WN  P             G       P
Sbjct: 526  S---GRGSTSKIPGFRTERN--QILGSRHHQEAWN-FPPHIHQSAHLLNSKGRGRDFQMP 579

Query: 620  SIGSALS--GGQRV-PSTMDNTEVLSSMTHTTLVEKHFGQNFHS---------------- 498
              GS +S  GG+   P      ++ + +  +  +   +G N  S                
Sbjct: 580  LSGSGVSSLGGENYSPLAEKLPDIDAQLNRSPAIASRWGSNIDSTSSGTWSSVVPPSSGV 639

Query: 497  --PLMASQGLSQTTHQ-----NQIKGQFGLLDANRTQMNQSVK---------FDSFERKA 366
              P+ A + L    H+      Q + QF  ++A+ T +NQ ++         F+ FE K 
Sbjct: 640  WPPVNARKSLPPPVHRIFPPPEQSRSQFDPINASSTVINQVLQKGSAMPEQPFNGFENKD 699

Query: 365  GTVENMSQLPNQLSGSVFSNNHRQGPVNPLQSQVLGS-MAQENF-VTPINAHVPSPLPPQ 192
                  + + NQ +     N   Q  VNP Q Q L S   +ENF  + + +  P PL  Q
Sbjct: 700  YNSMKPTPMSNQHAA---LNQQNQAHVNPFQPQQLPSHETRENFHPSGVTSMPPRPL-GQ 755

Query: 191  PMXXXXXXXXXXXXXGVMPLNRLSGIP-PIP 102
            P+              ++P N L  +  P+P
Sbjct: 756  PLNHGYNTHGHSTAISMVPSNALPAVQLPLP 786


>ref|XP_002518518.1| conserved hypothetical protein [Ricinus communis]
            gi|223542363|gb|EEF43905.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1023

 Score =  377 bits (968), Expect = e-101
 Identities = 276/719 (38%), Positives = 348/719 (48%), Gaps = 39/719 (5%)
 Frame = -2

Query: 2234 LDRFKAXXXXXXXXXXXXXXXXDVA--ALLNSDEIVRIYELVLSELNVNSKPLITELTII 2061
            LDRFK                 DVA  + L+S+EIV++YELVL EL  NSKP+IT+LTII
Sbjct: 35   LDRFKVLLKQKEEQARVSMEDDDVAGTSTLSSEEIVQLYELVLDELTFNSKPIITDLTII 94

Query: 2060 AGEQREHAEGIADAICTRIIEVPAELKLPSLYLLDSIVKNIGDEYVGCFSSRLPEVFVEA 1881
            AGE REH  GIADAIC RI+EVP + KLPSLYLLDSIVKNIG +YV  FSSRLPEVF  A
Sbjct: 95   AGELREHGAGIADAICARIVEVPVDQKLPSLYLLDSIVKNIGRDYVRHFSSRLPEVFCAA 154

Query: 1880 YRQVHPKQHPAMRHLFGTWSTVFPPPVLRKIGVELQFSSLGNHQXXXXXXXXXXXXXXXX 1701
            Y+QVHP  H +MRHLF TWSTVFPP VL KI  +LQFSS  N+                 
Sbjct: 155  YKQVHPNLHTSMRHLFRTWSTVFPPSVLSKIESQLQFSSQANNNNHSSGLSSLKASDSPR 214

Query: 1700 XTHGIHVNPKYLEARRQYEHDTAINDVHNTKGVSSTLQRYGQKPSVGHGEYDVDNSESIP 1521
             T+ IHVNPKY+    + E   + N   + +G SSTL+ +G KP +G  E+D D+ E  P
Sbjct: 215  TTNVIHVNPKYV----RLEPSPSENSAQHVRGASSTLKVHGHKPYIGCDEFDSDHVEVTP 270

Query: 1520 QQVGIQRRGSPG-LDPRTSITGVQGLIAPNFXXXXXXXXXXXXXXXXXSASD-DGNRIEN 1347
             +VG QR  + G   P + + G   L  P+                    S+ D     N
Sbjct: 271  SKVGAQRLNTMGNTGPSSFVHGPNRLHPPSSSRLTRRLSPSRIGAERPLPSEVDDFMAGN 330

Query: 1346 SPSRAFERASPLHSGFDYASDRLSKRNGEWNDRQMKHLVDHT----RPPVVPNPNIEFDR 1179
            SP R  E ASP H   D    R   R+ E N+ + KH  D         +  N +   + 
Sbjct: 331  SPRRFLEGASPSHPVLDCGPLRSMGRDEETNEWRRKHYSDDNHKKFEASIAYNLSNGHEH 390

Query: 1178 QRPRALIDAYGNYRGESKFNGKPLKIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTL 999
            Q PRALIDAYG  + +   N K L+IE LDV+G  +    R WQNTEEEE+ WEDMSPTL
Sbjct: 391  QGPRALIDAYGEDKRKRIPNSKHLQIERLDVDGTANKVGPRSWQNTEEEEFDWEDMSPTL 450

Query: 998  ADRSRTDELIPSKLPLRNSSAREGFGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGD 819
             DRSR++ L+ S  P   + AR GFG  + S  + D R+     Q QLP VD++SN + D
Sbjct: 451  IDRSRSNGLLLSVPPFGGAGARPGFGTRAASRLDSDLRSKQ-SGQAQLPLVDDSSNITDD 509

Query: 818  GGLIFSSNNLGDTGAKSLGGFGNLNNATQIQGSKYSREPWNVHPXXXXXXXXXSKVSGNA 639
                 S    G      L GF    N  Q  GS+Y RE W   P             G  
Sbjct: 510  ---TMSLLGPGRGSGGKLSGFQTDRN--QTMGSRYPREAWK-SPHHFSQSADLINAKGRN 563

Query: 638  NQMSFPSIGSALSGG----------------------QRVPSTMDNTEVLSSMTHTTLVE 525
              +  P  GS +S                          +PS M ++  LSS     LV 
Sbjct: 564  RDLQMPFSGSGISSSGSEILASLVDQLPDADAQIIRPPTLPSRMSSSTALSSTGVWPLVN 623

Query: 524  KHFGQNFHSPLMASQGLSQTTHQNQIKGQFGLLDANRTQMNQSVKFDSF---------ER 372
             H     H P +          Q Q +      +A+ T +NQ  +  SF         E 
Sbjct: 624  VH---KSHQPPLR----PIFPPQMQSRSLLDPRNASNTAVNQGFQKSSFLSEQQLNGLES 676

Query: 371  KAGTVENMSQLPNQLSGSVFSNNHRQGPVNPLQSQVLGSMAQENFVTPINAHVPSPLPP 195
            K  ++     LP+Q +     N   QG VNP Q Q      +ENF   + +  P PL P
Sbjct: 677  KEHSLTKQPLLPSQHAA---MNQQNQGQVNPFQPQ------RENFPPSVASLPPHPLAP 726


>ref|XP_012091393.1| PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha
            curcas] gi|643703717|gb|KDP20781.1| hypothetical protein
            JCGZ_21252 [Jatropha curcas]
          Length = 1029

 Score =  377 bits (967), Expect = e-101
 Identities = 283/710 (39%), Positives = 362/710 (50%), Gaps = 38/710 (5%)
 Frame = -2

Query: 2234 LDRFKAXXXXXXXXXXXXXXXXDVAA-LLNSDEIVRIYELVLSELNVNSKPLITELTIIA 2058
            LDRF+A                D A   L+++EIV++YELVL EL  NSKP+IT+LTIIA
Sbjct: 34   LDRFRALLKQREEEARVSAEDDDAAGPTLSAEEIVQLYELVLDELTFNSKPIITDLTIIA 93

Query: 2057 GEQREHAEGIADAICTRIIEVPAELKLPSLYLLDSIVKNIGDEYVGCFSSRLPEVFVEAY 1878
            GE RE  EGIADAIC RIIEVP E KLPSLYLLDSIVKNIG +YV  FS+RLPEVF EAY
Sbjct: 94   GELREQGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGRDYVRYFSTRLPEVFCEAY 153

Query: 1877 RQVHPKQHPAMRHLFGTWSTVFPPPVLRKIGVELQFSSLGNHQXXXXXXXXXXXXXXXXX 1698
            RQVHP  +P+MRHLFGTWS+VFPP VL KI  +LQFS   N Q                 
Sbjct: 154  RQVHPNLYPSMRHLFGTWSSVFPPSVLGKIETQLQFSPQVNSQ--SSGLSSLKASDSPRP 211

Query: 1697 THGIHVNPKYLEARRQYEHDTAINDV-HNTKGVSSTLQRYGQKPSVGHGEYDVDNSESIP 1521
            THGIHVNPKYL   RQ E+ T+ N+   + +G SSTL+ YGQKP++ + EYD D++E   
Sbjct: 212  THGIHVNPKYL---RQLENSTSDNNAQQHVRGASSTLKVYGQKPAIAYDEYDSDHAEVTS 268

Query: 1520 QQVGIQRR---GSPGLDPRTS-ITGVQGLIAPNFXXXXXXXXXXXXXXXXXSASDDGNRI 1353
             QVG QR    G+ G    TS + G   L A +                   +  D   +
Sbjct: 269  SQVGAQRLNTVGTVGTVGHTSFMLGANKLYASSSSRLARHAPSSVGAERPLPSEVDDFAM 328

Query: 1352 ENSPSRAFERASPLHSGFDYASDRLSKRNGEWNDRQMKHLVD----HTRPPVVPNPNIEF 1185
             NSP R  E ASP H  FDY   R   R+ E  D + KH  D         V  + +   
Sbjct: 329  GNSPRRFVEGASPSHPLFDYGPSRPIARDEETTDWRRKHYSDDIQNRLETSVAYSLSNGH 388

Query: 1184 DRQRPRALIDAYGNYRGESKFNGKPLKIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSP 1005
            + Q PRALIDAYG  +     N KPL+I+ LDV+G+ +    R WQNTEEEE+ WEDMSP
Sbjct: 389  EHQGPRALIDAYGEDKRSRVSNSKPLQIDRLDVDGMVNKVAPRLWQNTEEEEFDWEDMSP 448

Query: 1004 TLADRSRTDELIPSKL-PLRNSSAREGFGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNF 828
            TLADR+R+++ + S + P      R GFG    S  + D R+     Q QL  +D++S+ 
Sbjct: 449  TLADRNRSNDFLSSSVPPFGGVGTRPGFGTRGPSQLDSDIRSNR-SAQAQLSLIDDSSDI 507

Query: 827  SGDGGLIFSSNNLGDTGAKSLGGFGNLNNATQIQGSKYSREPWNVHPXXXXXXXXXSKVS 648
            + D   I  S   G      L GF    N  QI  S Y RE W +           +K  
Sbjct: 508  AEDSIPILGS---GRGSTAKLPGFQPERN--QIMASHYPREAWKLLNHYPQSTDLNAKGR 562

Query: 647  GNANQMSF------PSIGSAL---------SGGQRVPSTMDNTEVLSSMTHTT-----LV 528
                +M F       S+  +L         + GQ V      + V SS+  +T     LV
Sbjct: 563  NREFRMPFSRSVISSSVSDSLAPLVDKLPDTDGQYVRPPTLPSRVGSSIAPSTAGVWPLV 622

Query: 527  EKHFGQNFHSPLMASQGLSQTTHQNQIKGQFGLLDANRTQMNQSVKFDSF--ERKAGTVE 354
              H     H P +          Q Q + QF   +A  T +NQ ++  +F  E++    E
Sbjct: 623  NVH---KSHPPPVH----PIFPPQKQSRSQFDSTNARNTVVNQGLQQSTFSSEQQFNGFE 675

Query: 353  NM----SQLPNQLSGSVFSNNHRQGPVNPLQSQVLGS-MAQENFVTPINA 219
            +M    ++ P   S     N   Q  VN  Q Q L S  A+ENF   I++
Sbjct: 676  SMEPSLTKQPLLPSRHATLNQQNQAQVNHFQPQFLPSNEARENFPLSISS 725


>ref|XP_007026008.1| PCF11P-similar protein 4, putative isoform 1 [Theobroma cacao]
            gi|508781374|gb|EOY28630.1| PCF11P-similar protein 4,
            putative isoform 1 [Theobroma cacao]
          Length = 1004

 Score =  374 bits (959), Expect = e-100
 Identities = 282/768 (36%), Positives = 370/768 (48%), Gaps = 47/768 (6%)
 Frame = -2

Query: 2165 VAALLNSDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAE 1986
            VAA  +  EIV++YE VLSEL  NSKP+IT+LTIIAGEQREH EGIADAIC RI+EVP E
Sbjct: 40   VAATPSRGEIVQLYEAVLSELTFNSKPIITDLTIIAGEQREHGEGIADAICARILEVPVE 99

Query: 1985 LKLPSLYLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPP 1806
             KLPSLYLLDSIVKNIG EYV  FSSRLPEVF EAYRQV+P  +PAMRHLFGTWSTVFPP
Sbjct: 100  QKLPSLYLLDSIVKNIGREYVRHFSSRLPEVFCEAYRQVNPNLYPAMRHLFGTWSTVFPP 159

Query: 1805 PVLRKIGVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAIN 1626
             VLRKI ++LQFS   N Q                 THGIHVNPKYL  R+  +   A +
Sbjct: 160  SVLRKIEIQLQFSQSANQQ--SPGVTSLRSSESPRPTHGIHVNPKYL--RQLEQQSGADS 215

Query: 1625 DVHNTKGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGL 1446
            +  + +G S+ L+ YGQK S+G  E+D D++E     VG++R  S G   RTS+  V G 
Sbjct: 216  NTQHVRGTSAALKVYGQKHSIGFDEFDSDHTEVPSSHVGVRRLRSTGNVGRTSV--VVGA 273

Query: 1445 IAPNFXXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSKRN 1266
                                   +  D    + SP R  E  SP    FDY   R   R+
Sbjct: 274  NKSASIVSRPFSPSRIGSDRLVLSEVDDLPSDGSPRRFVEGTSPSRPVFDYGRGRAIVRD 333

Query: 1265 GEWNDRQMKHLVD--HTRPPVVPNP---NIEFDRQRPRALIDAYGNYRGESKFNGKPLKI 1101
             E  + Q KH  D  H R     N    +   +RQ PRALIDAYGN RG+   N KP ++
Sbjct: 334  EETREWQRKHSYDDYHNRSESSLNAYKLSNGHERQTPRALIDAYGNDRGKGISNSKPAQV 393

Query: 1100 EPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSSAREGFG 921
            E L VNG+ +  T   WQNTEEEE+ WEDMSPTLADRSR+++   S +P   S      G
Sbjct: 394  ERLAVNGMGNKVTPISWQNTEEEEFDWEDMSPTLADRSRSNDFSLSSVPPFGSIGERPAG 453

Query: 920  RSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNLNN 741
              S+S S    RA     Q QLP VD++S    +     SS                   
Sbjct: 454  LESNSRSS---RA----TQTQLPLVDDSSTIPKNAVSSLSSG----------------RG 490

Query: 740  ATQIQGSKYSREPWN-VHPXXXXXXXXXSKVSGNANQMSFPSIGSALSGGQRVPSTMD-- 570
            ++QI  S + +E WN  +          +K  G   Q+ F + G    GG+++   +D  
Sbjct: 491  SSQILHSHHPQEAWNSSYHFSQPSRNLHAKGRGRDFQIPFSASGIQSLGGEKIVPLIDKL 550

Query: 569  -----------------NTEVLSSMT---HTTLVEKHFG----QNFHSPLMASQGLSQTT 462
                              +  L S+T      ++    G     N H     +   + + 
Sbjct: 551  PDGGSQFLRPPAVVPRTGSSSLDSVTVGARPAIIPSTTGVWPPVNVHKSQPPAMHSNYSL 610

Query: 461  HQNQIKGQFGLLDANRTQMNQ--------SVKFDSFERKAGTVENMSQLPNQLSGSVFSN 306
             Q+  + QF  ++     MN+        + +FD FE K  ++  + QLP+Q +     +
Sbjct: 611  QQHS-RSQFDSINPINMVMNEGPNKRSYMAEQFDRFESKEQSLTRVPQLPDQRAA---LH 666

Query: 305  NHRQGPVNPLQSQVLGSM-AQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXXGVMPLN 129
               Q  V  LQ   L S   +ENF++   A +P  L    +              ++P N
Sbjct: 667  QRNQMQVTSLQPHFLPSQDLRENFLSSATAPLPPRLLAPSLNHGYTPQMHGAVISMVPSN 726

Query: 128  RLS------GIPPIPNTSFQVQXXXXXXXXXXXXXXXXXXXXSQNVGP 3
             +        IP +P  S Q+Q                    +QN GP
Sbjct: 727  PIHVAQPPLPIPNMPTVSLQLQGGALPPLPPGPPPASQMIPATQNAGP 774


>gb|KDO75520.1| hypothetical protein CISIN_1g003277mg [Citrus sinensis]
          Length = 834

 Score =  370 bits (949), Expect = 4e-99
 Identities = 259/678 (38%), Positives = 348/678 (51%), Gaps = 25/678 (3%)
 Frame = -2

Query: 2153 LNSDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLP 1974
            L+++EIV++YE VL+EL  NSKP+IT+LTIIAGEQR H +GIA+AICTRI+E P   KLP
Sbjct: 64   LSTNEIVQLYETVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICTRILEAPVNHKLP 123

Query: 1973 SLYLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLR 1794
            SLYLLDSIVKNI  EYV  FSSRLPEVF EAYRQVHP  + AM+HLFGTWSTVFP  VLR
Sbjct: 124  SLYLLDSIVKNINKEYVRYFSSRLPEVFCEAYRQVHPDLYSAMQHLFGTWSTVFPQAVLR 183

Query: 1793 KIGVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDVHN 1614
            KI  ELQFSS  N Q                 THGIHVNPKY+   RQ+EH    +++  
Sbjct: 184  KIEAELQFSSQVNKQ--SSNVNSLRASESPRPTHGIHVNPKYI---RQFEHSNTDSNIQQ 238

Query: 1613 TKGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPN 1434
             KG SS L+ YGQ P++G+ E+D ++ E    QVG QR    G   R +      L A  
Sbjct: 239  VKGTSSNLKEYGQNPAIGYDEFDTNHLELTSSQVGGQRSNPAGSVGRATF----ALGANK 294

Query: 1433 FXXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSKRNGEWN 1254
                               +  D   +ENSP R  E  SP H  FDY   R   RN E +
Sbjct: 295  LHPSSTSRLGRSLSPLAIGSEGDEFAVENSP-RRLEGTSPSHPVFDYGIGRAIGRNEEVS 353

Query: 1253 DRQMKHLVDHTRPPVVPNPNIEFDRQRPRALIDAYGNYRGESKFNGKPLKIEPLDVNGIN 1074
            + +  +  + T      N +   + Q PRALIDAYG+ R  S  N KP ++  + +NG+ 
Sbjct: 354  EWRNPNRFESTSTSY--NLSNGHEHQGPRALIDAYGSDRRAS--NNKPPQVGHMGINGMG 409

Query: 1073 SDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSS-AREGFGRSSDSISE 897
            +   +R WQNTEEEE+ WEDMSPTL DR R ++ +PS +PL  S+ AR  F + + S  E
Sbjct: 410  NKVASRSWQNTEEEEFDWEDMSPTLLDRGRKNDFLPSSVPLYGSTGARPDFSKLNASSLE 469

Query: 896  PDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNLNNATQIQGSK 717
             D R  +   Q QLP +D++S  + D   +  S      G   + GF +  N  Q  GS+
Sbjct: 470  SDVRTNH-SSQAQLPLLDDSSVTAEDSVSLLGSGR----GTGKVSGFQSEPN--QNLGSR 522

Query: 716  YSREPWNV-HPXXXXXXXXXSKVSGNANQMSFPSIGSALSGGQRVPSTMDN--------- 567
            Y +E WN+ H           +  G  + + FP  G    G  +    +D          
Sbjct: 523  YPQESWNLPHHFSRSSHPPNGRGRGRDSHIPFPGSGVPSLGVDKAAPYIDKFVGADAQFV 582

Query: 566  ------TEVLSS---MTHTTLVEKHFG----QNFHSPLMASQGLSQTTHQNQIKGQFGLL 426
                  + + SS   +  T  ++   G     N H P +   G      Q Q + QF  +
Sbjct: 583  RPPAVVSRIGSSGPDLLSTGAIQSSTGAWAPMNLHKPHL-PPGQPVYPQQKQTRTQFDSI 641

Query: 425  DANRTQMNQSVKFDSFERKAGTVENMSQLPNQLSGSVFSNNHRQGPVNPLQSQVLGSMAQ 246
            +A    +NQ      +  ++   + +S +  QL     + N +    N  ++Q L   A 
Sbjct: 642  NAAGRILNQGPSKSLYNSES---KELSLMKPQLHDQHATPNQQ----NQGRAQFLSQEAT 694

Query: 245  ENFVTPINAHV-PSPLPP 195
             NF+  I A + P PL P
Sbjct: 695  NNFLPSIAASMPPHPLAP 712


>ref|XP_010909642.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like [Elaeis
            guineensis]
          Length = 1053

 Score =  369 bits (946), Expect = 9e-99
 Identities = 272/736 (36%), Positives = 368/736 (50%), Gaps = 50/736 (6%)
 Frame = -2

Query: 2141 EIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPSLYL 1962
            EIVR Y+ +LSEL  NSKP+ITEL+IIAG+  + AEGIADAIC R++EVP + KLP LYL
Sbjct: 94   EIVRFYKELLSELTFNSKPVITELSIIAGQHSQFAEGIADAICARVLEVPVDQKLPCLYL 153

Query: 1961 LDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRKIGV 1782
            LDSIVKNIG EYV  F++ LP+VF EAY QV P Q+ AMRHLFGTW  VFP  VL KI  
Sbjct: 154  LDSIVKNIGREYVKYFAACLPKVFCEAYNQVPPTQYSAMRHLFGTWFQVFPLSVLHKIED 213

Query: 1781 ELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDVHNTKGV 1602
            ELQFS   N Q                 +HGIHVNPKYLEAR+Q +H T  +D  + +GV
Sbjct: 214  ELQFSPTENKQSSGITSTRHSESPSSRPSHGIHVNPKYLEARQQLKHST--SDTEHVRGV 271

Query: 1601 SSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSP--GLDPRTSITGVQGLIAP-NF 1431
            SS+    GQK S+   EY +D+ E +P + G  R GSP       TS+  V+G       
Sbjct: 272  SSS----GQKSSMQCNEYSIDHPEVLPPRPGAARTGSPQTAATCTTSMVEVEGPTRQLKI 327

Query: 1430 XXXXXXXXXXXXXXXXXSASDDGNRIENSPSRAFERASPLHSGFDYASDRLSKRNGEWND 1251
                             S   D    + SP R  ER SP HSGF Y   R + +NG W +
Sbjct: 328  KISRSSPPPIIGPRNSISPPIDRFSRDTSPRRMLERVSPSHSGFVYGPGRGTNQNG-WLE 386

Query: 1250 RQ--MKHLVDHTRPPVVPNPNIEFDRQRPRALIDAYGNYRGESKFNGKPLKIEPLDVNGI 1077
            R+          +  +  N N  + +QR R LIDAYGNY G+S    K  K++ +DVN +
Sbjct: 387  RRWPFDDSAQKIQASMAFNLNNGYAKQRSRELIDAYGNYTGKSASLEKLPKVQRVDVNSV 446

Query: 1076 NSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSSAREGFGRSSDSISE 897
             S+   R+W+N+EEEEYVWEDMSPTL+DRSR + L P    L   S R G  R   S+ +
Sbjct: 447  ASERAARKWKNSEEEEYVWEDMSPTLSDRSRRNSLPPFGPSLPPLSTRAGLTRPDASLLD 506

Query: 896  PDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNLNN-ATQIQGS 720
             D     WP Q QLPAV +++    D   +F S + G    K L    + N+     QGS
Sbjct: 507  HDSGRRSWPGQAQLPAVGDSAFTIEDRIPVFGSAH-GSMNRKYLDSTVSQNDWLPHYQGS 565

Query: 719  KYSREPWNV--HPXXXXXXXXXSKVSGNANQMSFPSIGSALSGGQRVPSTMDNTEVLS-- 552
            ++  +P  +              +  G A+QM   + G       ++PS  ++T  L   
Sbjct: 566  QHMHQPRKLPFMFPKSAQHSLSPQSRGRAHQMPVAASGITPLVINKLPSPYEHTTDLEVP 625

Query: 551  ----SMTH-------TTLVEKHFGQNFHSPLMAS------------QGLSQTTHQNQIKG 441
                S +H       T+ +E+H  Q  HSP  A               L    +Q Q K 
Sbjct: 626  FQRLSSSHSDPFDVDTSTLERHLTQRPHSPPPAPIIWPPVHNTQQLPLLPIPPNQKQFKS 685

Query: 440  QFGLLDANRTQMNQ---------SVKFDSFERKAGTVENMSQLPNQLSGSVFSN--NHRQ 294
             F  ++AN+  +NQ           + D+ +RK      + QLP Q  G   +N  +  Q
Sbjct: 686  SFDHVEANKPILNQRPESFFNLSQYQNDTADRKISNSNKLLQLPYQQPGLAHANQQSQEQ 745

Query: 293  GPVNPLQSQVLGSMAQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXXGVMPLNRLSGI 114
            G    +QSQ     +  + ++P  A + S +  QP+              V+  N+LSG+
Sbjct: 746  GASMQIQSQ----KSNGSILSPAPAQLSSQIVAQPLNHVQTSGQGIAMGSVLH-NQLSGL 800

Query: 113  P------PIPNTSFQV 84
            P       +P+TS +V
Sbjct: 801  PSSVAVNSVPDTSLRV 816


>gb|KHG24664.1| Pre-mRNA cleavage complex 2 Pcf11 [Gossypium arboreum]
          Length = 1004

 Score =  350 bits (898), Expect = 3e-93
 Identities = 275/768 (35%), Positives = 358/768 (46%), Gaps = 53/768 (6%)
 Frame = -2

Query: 2147 SDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPSL 1968
            ++EIV++YE+VLSEL  NSKP+IT+LTIIAGEQREH EGIADAIC RIIEVP E KLPSL
Sbjct: 46   TEEIVQLYEVVLSELTFNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSL 105

Query: 1967 YLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRKI 1788
            YLLDSIVKNIG EYV  FSSRLPEVF EAYRQV+P  HPAMRHLFGTWSTVFPP VLRKI
Sbjct: 106  YLLDSIVKNIGREYVRYFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKI 165

Query: 1787 GVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDTAINDVHNTK 1608
             ++LQFS  GN Q                 THGIHVNPKYL  R+  +   A ++  + +
Sbjct: 166  EMQLQFSQTGNQQ--SSGVTSLQSSESPRPTHGIHVNPKYL--RQLEQQSGADSNTQHVR 221

Query: 1607 GVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPNFX 1428
            G+S+  + YGQK ++ + E+D D++E     VG+QR  S G   RTS+      I  N  
Sbjct: 222  GMSAGQKLYGQKHTIAYDEFDSDHTEVPSSHVGVQRLSSTGNVGRTSLA-----IGANKS 276

Query: 1427 XXXXXXXXXXXXXXXXSASD-------DGNRIENSPSRAFERASPLHSG-FDYASDRLSK 1272
                              SD       D    ++SP R  E ASP     FD+   R + 
Sbjct: 277  QLSSASRVSRPFSPSRIGSDRLLSSEIDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGTI 336

Query: 1271 RNGEWNDRQMKHLVDHTRPPVVPNPNI-----EFDRQRPRALIDAYGNYRGESKFNGKPL 1107
            R+ E  +   KH     R     + N        +RQ  RALIDAYGN RG+   N KP+
Sbjct: 337  RDEETREWPRKHFYGDYRNCSESSLNAYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPV 396

Query: 1106 KIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSSAREG 927
            ++E LD+NG+ +  T R WQNTEEEE+ WEDMSPTLADR R++E   S +    S     
Sbjct: 397  QVERLDLNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR-RSNEFSVSSVSTFGSIGARP 455

Query: 926  FGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGGFGNL 747
             G  S+  S  +        Q QL A+D +S    D                SL     L
Sbjct: 456  AGLESNRSSRSN--------QTQL-ALDESSTIPED-------------TVPSLSSGHGL 493

Query: 746  NNATQIQGSKYSREPW-NVHPXXXXXXXXXSKVSGNANQMSFPSIG-SALSGGQRVPSTM 573
            N   QIQ  +Y ++ W N +P         +K  G   +  F + G S+L G + VP   
Sbjct: 494  N---QIQRPRYPQDAWSNSYPFSQSSHQLHAKGRGRDFRTPFSASGISSLGGDKNVPLIE 550

Query: 572  DNTEVLSSMTHTTLVEKHFGQN-------------------FHSPLMASQGLSQTTHQNQ 450
               E  S       +    G +                      P+   +    T H N 
Sbjct: 551  KLPEGGSQFVRPPALVPRSGSSSLDTVTVGAQPAMLPLTAGAWPPVNVLKSQPPTAHTNY 610

Query: 449  I-----KGQFGLLDANRTQMNQS--------VKFDSFERKAGTVENMSQLPNQLSGSVFS 309
                  +  F  L+     MNQ          +FD+FE K  ++  + QLP Q      +
Sbjct: 611  SLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLTTVPQLPGQRP----A 666

Query: 308  NNHRQGPVNPLQSQVLGSMAQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXXGVMPLN 129
               R      LQ       A+++F++     +P  L    M              ++P N
Sbjct: 667  LRQRNSLHGSLQLHFTPHEARDSFLSSATGPLPPRLLAPSMNHGYSPQMHGAGISMVPSN 726

Query: 128  RLS------GIPPIPNTSFQVQXXXXXXXXXXXXXXXXXXXXSQNVGP 3
             +        IP +P  S  +Q                    +QN GP
Sbjct: 727  PVPVAQPPLSIPNMPTGSLHLQGGAIPPLPPGPRPASQMMPATQNAGP 774


>ref|XP_012450329.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
            [Gossypium raimondii]
          Length = 1001

 Score =  350 bits (897), Expect = 4e-93
 Identities = 277/774 (35%), Positives = 366/774 (47%), Gaps = 59/774 (7%)
 Frame = -2

Query: 2147 SDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPSL 1968
            ++EIV++YE+VLSEL  NSKP+IT+LTIIAGEQREH EGIADAIC RIIEVP E KLPSL
Sbjct: 46   TEEIVQLYEVVLSELTFNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSL 105

Query: 1967 YLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRKI 1788
            YLLDSIVKNIG EYV  FSSRLPEVF EAYRQV+P  HPAMRHLFGTWSTVFPP VLRKI
Sbjct: 106  YLLDSIVKNIGREYVRYFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKI 165

Query: 1787 GVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDT-AINDVHNT 1611
             ++LQFS  GN Q                 THGIHVNPKYL   RQ+E  + A ++  + 
Sbjct: 166  EMQLQFSQTGNQQ--SSGVTSLQSSESPRPTHGIHVNPKYL---RQFEQQSGADSNTQHV 220

Query: 1610 KGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPNF 1431
            +G+S+  + YGQK ++ + E+D D++E     VG+QR  S G    TS+      I  N 
Sbjct: 221  RGMSAGQKLYGQKHTITYDEFDSDHTEVPSSHVGVQRLSSTGNVGCTSLA-----IGANK 275

Query: 1430 XXXXXXXXXXXXXXXXXSASD-------DGNRIENSPSRAFERASPLHSG-FDYASDRLS 1275
                               SD       D    ++SP R  E ASP     FD+   R +
Sbjct: 276  SQLSSASRVSRPFSPSRIGSDRLLSSEVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGT 335

Query: 1274 KRNGEWNDRQMKHLVDHTR--------PPVVPNPNIEFDRQRPRALIDAYGNYRGESKFN 1119
             R+ E  +   KH     R           + N N   +RQ  RALIDAYGN RG+   N
Sbjct: 336  IRDEETREWPRKHFYGDYRNCSEGSLNSYKLSNGN---ERQTLRALIDAYGNDRGQGMSN 392

Query: 1118 GKPLKIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSS 939
             KP+++E LDVNG+ +  T R WQNTEEEE+ WEDMSPTLADR R++E   S +    S 
Sbjct: 393  SKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR-RSNEFSVSSVATFGSI 451

Query: 938  AREGFGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGG 759
                 G  S+  S  +        Q QL A+D +S    D                SL  
Sbjct: 452  GARPAGLESNRSSRSN--------QTQL-ALDESSTIPED-------------AVPSLSS 489

Query: 758  FGNLNNATQIQGSKYSREPW-NVHPXXXXXXXXXSKVSGNANQMSFPSIG-SALSGGQRV 585
               LN   QIQ  +Y ++ W N +P         +K  G    + F + G S+L G + V
Sbjct: 490  GHGLN---QIQRPRYPQDAWSNSYPFSQSSHQLHAKGRGRDFWIPFSASGISSLGGEKNV 546

Query: 584  P---------------------STMDNTEVLSSMTHTTLVEKHFGQNFHSPLMASQGLSQ 468
            P                     S   + + ++ +T   ++    G     P+   +    
Sbjct: 547  PLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGA--WPPVNVPKSQPP 604

Query: 467  TTHQNQI-----KGQFGLLDANRTQMNQS--------VKFDSFERKAGTVENMSQLPNQL 327
              H N       +  F  L+     MNQ          +FD+FE K  +++ + QLP Q 
Sbjct: 605  NAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQLPGQR 664

Query: 326  SGSVFSNNHRQGPVNPLQSQVLGSMAQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXX 147
                 +   R      LQ     + A+++F++     +P  L    M             
Sbjct: 665  P----ALQQRNSLHGSLQPHFPPNDARDSFLSSATGPLPPRLLAPSMNHGYSPQMHGAGI 720

Query: 146  GVMPLNRLS------GIPPIPNTSFQVQXXXXXXXXXXXXXXXXXXXXSQNVGP 3
             ++P N +        IP +P  S  +Q                    +QN GP
Sbjct: 721  SMVPSNPIPVAQPPLSIPNMPTGSLHLQGGAMPPLPPGPRPTSQMMPAAQNAGP 774


>gb|KJB67158.1| hypothetical protein B456_010G178200 [Gossypium raimondii]
          Length = 1024

 Score =  350 bits (897), Expect = 4e-93
 Identities = 277/774 (35%), Positives = 366/774 (47%), Gaps = 59/774 (7%)
 Frame = -2

Query: 2147 SDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPSL 1968
            ++EIV++YE+VLSEL  NSKP+IT+LTIIAGEQREH EGIADAIC RIIEVP E KLPSL
Sbjct: 46   TEEIVQLYEVVLSELTFNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSL 105

Query: 1967 YLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRKI 1788
            YLLDSIVKNIG EYV  FSSRLPEVF EAYRQV+P  HPAMRHLFGTWSTVFPP VLRKI
Sbjct: 106  YLLDSIVKNIGREYVRYFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKI 165

Query: 1787 GVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDT-AINDVHNT 1611
             ++LQFS  GN Q                 THGIHVNPKYL   RQ+E  + A ++  + 
Sbjct: 166  EMQLQFSQTGNQQ--SSGVTSLQSSESPRPTHGIHVNPKYL---RQFEQQSGADSNTQHV 220

Query: 1610 KGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPNF 1431
            +G+S+  + YGQK ++ + E+D D++E     VG+QR  S G    TS+      I  N 
Sbjct: 221  RGMSAGQKLYGQKHTITYDEFDSDHTEVPSSHVGVQRLSSTGNVGCTSLA-----IGANK 275

Query: 1430 XXXXXXXXXXXXXXXXXSASD-------DGNRIENSPSRAFERASPLHSG-FDYASDRLS 1275
                               SD       D    ++SP R  E ASP     FD+   R +
Sbjct: 276  SQLSSASRVSRPFSPSRIGSDRLLSSEVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGT 335

Query: 1274 KRNGEWNDRQMKHLVDHTR--------PPVVPNPNIEFDRQRPRALIDAYGNYRGESKFN 1119
             R+ E  +   KH     R           + N N   +RQ  RALIDAYGN RG+   N
Sbjct: 336  IRDEETREWPRKHFYGDYRNCSEGSLNSYKLSNGN---ERQTLRALIDAYGNDRGQGMSN 392

Query: 1118 GKPLKIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSS 939
             KP+++E LDVNG+ +  T R WQNTEEEE+ WEDMSPTLADR R++E   S +    S 
Sbjct: 393  SKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR-RSNEFSVSSVATFGSI 451

Query: 938  AREGFGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGG 759
                 G  S+  S  +        Q QL A+D +S    D                SL  
Sbjct: 452  GARPAGLESNRSSRSN--------QTQL-ALDESSTIPED-------------AVPSLSS 489

Query: 758  FGNLNNATQIQGSKYSREPW-NVHPXXXXXXXXXSKVSGNANQMSFPSIG-SALSGGQRV 585
               LN   QIQ  +Y ++ W N +P         +K  G    + F + G S+L G + V
Sbjct: 490  GHGLN---QIQRPRYPQDAWSNSYPFSQSSHQLHAKGRGRDFWIPFSASGISSLGGEKNV 546

Query: 584  P---------------------STMDNTEVLSSMTHTTLVEKHFGQNFHSPLMASQGLSQ 468
            P                     S   + + ++ +T   ++    G     P+   +    
Sbjct: 547  PLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGA--WPPVNVPKSQPP 604

Query: 467  TTHQNQI-----KGQFGLLDANRTQMNQS--------VKFDSFERKAGTVENMSQLPNQL 327
              H N       +  F  L+     MNQ          +FD+FE K  +++ + QLP Q 
Sbjct: 605  NAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQLPGQR 664

Query: 326  SGSVFSNNHRQGPVNPLQSQVLGSMAQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXX 147
                 +   R      LQ     + A+++F++     +P  L    M             
Sbjct: 665  P----ALQQRNSLHGSLQPHFPPNDARDSFLSSATGPLPPRLLAPSMNHGYSPQMHGAGI 720

Query: 146  GVMPLNRLS------GIPPIPNTSFQVQXXXXXXXXXXXXXXXXXXXXSQNVGP 3
             ++P N +        IP +P  S  +Q                    +QN GP
Sbjct: 721  SMVPSNPIPVAQPPLSIPNMPTGSLHLQGGAMPPLPPGPRPTSQMMPAAQNAGP 774


>gb|KJB67157.1| hypothetical protein B456_010G178200 [Gossypium raimondii]
          Length = 831

 Score =  350 bits (897), Expect = 4e-93
 Identities = 277/774 (35%), Positives = 366/774 (47%), Gaps = 59/774 (7%)
 Frame = -2

Query: 2147 SDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPSL 1968
            ++EIV++YE+VLSEL  NSKP+IT+LTIIAGEQREH EGIADAIC RIIEVP E KLPSL
Sbjct: 46   TEEIVQLYEVVLSELTFNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSL 105

Query: 1967 YLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRKI 1788
            YLLDSIVKNIG EYV  FSSRLPEVF EAYRQV+P  HPAMRHLFGTWSTVFPP VLRKI
Sbjct: 106  YLLDSIVKNIGREYVRYFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKI 165

Query: 1787 GVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDT-AINDVHNT 1611
             ++LQFS  GN Q                 THGIHVNPKYL   RQ+E  + A ++  + 
Sbjct: 166  EMQLQFSQTGNQQ--SSGVTSLQSSESPRPTHGIHVNPKYL---RQFEQQSGADSNTQHV 220

Query: 1610 KGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPNF 1431
            +G+S+  + YGQK ++ + E+D D++E     VG+QR  S G    TS+      I  N 
Sbjct: 221  RGMSAGQKLYGQKHTITYDEFDSDHTEVPSSHVGVQRLSSTGNVGCTSLA-----IGANK 275

Query: 1430 XXXXXXXXXXXXXXXXXSASD-------DGNRIENSPSRAFERASPLHSG-FDYASDRLS 1275
                               SD       D    ++SP R  E ASP     FD+   R +
Sbjct: 276  SQLSSASRVSRPFSPSRIGSDRLLSSEVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGT 335

Query: 1274 KRNGEWNDRQMKHLVDHTR--------PPVVPNPNIEFDRQRPRALIDAYGNYRGESKFN 1119
             R+ E  +   KH     R           + N N   +RQ  RALIDAYGN RG+   N
Sbjct: 336  IRDEETREWPRKHFYGDYRNCSEGSLNSYKLSNGN---ERQTLRALIDAYGNDRGQGMSN 392

Query: 1118 GKPLKIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSS 939
             KP+++E LDVNG+ +  T R WQNTEEEE+ WEDMSPTLADR R++E   S +    S 
Sbjct: 393  SKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR-RSNEFSVSSVATFGSI 451

Query: 938  AREGFGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGG 759
                 G  S+  S  +        Q QL A+D +S    D                SL  
Sbjct: 452  GARPAGLESNRSSRSN--------QTQL-ALDESSTIPED-------------AVPSLSS 489

Query: 758  FGNLNNATQIQGSKYSREPW-NVHPXXXXXXXXXSKVSGNANQMSFPSIG-SALSGGQRV 585
               LN   QIQ  +Y ++ W N +P         +K  G    + F + G S+L G + V
Sbjct: 490  GHGLN---QIQRPRYPQDAWSNSYPFSQSSHQLHAKGRGRDFWIPFSASGISSLGGEKNV 546

Query: 584  P---------------------STMDNTEVLSSMTHTTLVEKHFGQNFHSPLMASQGLSQ 468
            P                     S   + + ++ +T   ++    G     P+   +    
Sbjct: 547  PLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGA--WPPVNVPKSQPP 604

Query: 467  TTHQNQI-----KGQFGLLDANRTQMNQS--------VKFDSFERKAGTVENMSQLPNQL 327
              H N       +  F  L+     MNQ          +FD+FE K  +++ + QLP Q 
Sbjct: 605  NAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQLPGQR 664

Query: 326  SGSVFSNNHRQGPVNPLQSQVLGSMAQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXX 147
                 +   R      LQ     + A+++F++     +P  L    M             
Sbjct: 665  P----ALQQRNSLHGSLQPHFPPNDARDSFLSSATGPLPPRLLAPSMNHGYSPQMHGAGI 720

Query: 146  GVMPLNRLS------GIPPIPNTSFQVQXXXXXXXXXXXXXXXXXXXXSQNVGP 3
             ++P N +        IP +P  S  +Q                    +QN GP
Sbjct: 721  SMVPSNPIPVAQPPLSIPNMPTGSLHLQGGAMPPLPPGPRPTSQMMPAAQNAGP 774


>ref|XP_012450328.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
            [Gossypium raimondii] gi|763800201|gb|KJB67156.1|
            hypothetical protein B456_010G178200 [Gossypium
            raimondii]
          Length = 1004

 Score =  350 bits (897), Expect = 4e-93
 Identities = 277/774 (35%), Positives = 366/774 (47%), Gaps = 59/774 (7%)
 Frame = -2

Query: 2147 SDEIVRIYELVLSELNVNSKPLITELTIIAGEQREHAEGIADAICTRIIEVPAELKLPSL 1968
            ++EIV++YE+VLSEL  NSKP+IT+LTIIAGEQREH EGIADAIC RIIEVP E KLPSL
Sbjct: 46   TEEIVQLYEVVLSELTFNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSL 105

Query: 1967 YLLDSIVKNIGDEYVGCFSSRLPEVFVEAYRQVHPKQHPAMRHLFGTWSTVFPPPVLRKI 1788
            YLLDSIVKNIG EYV  FSSRLPEVF EAYRQV+P  HPAMRHLFGTWSTVFPP VLRKI
Sbjct: 106  YLLDSIVKNIGREYVRYFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKI 165

Query: 1787 GVELQFSSLGNHQXXXXXXXXXXXXXXXXXTHGIHVNPKYLEARRQYEHDT-AINDVHNT 1611
             ++LQFS  GN Q                 THGIHVNPKYL   RQ+E  + A ++  + 
Sbjct: 166  EMQLQFSQTGNQQ--SSGVTSLQSSESPRPTHGIHVNPKYL---RQFEQQSGADSNTQHV 220

Query: 1610 KGVSSTLQRYGQKPSVGHGEYDVDNSESIPQQVGIQRRGSPGLDPRTSITGVQGLIAPNF 1431
            +G+S+  + YGQK ++ + E+D D++E     VG+QR  S G    TS+      I  N 
Sbjct: 221  RGMSAGQKLYGQKHTITYDEFDSDHTEVPSSHVGVQRLSSTGNVGCTSLA-----IGANK 275

Query: 1430 XXXXXXXXXXXXXXXXXSASD-------DGNRIENSPSRAFERASPLHSG-FDYASDRLS 1275
                               SD       D    ++SP R  E ASP     FD+   R +
Sbjct: 276  SQLSSASRVSRPFSPSRIGSDRLLSSEVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGT 335

Query: 1274 KRNGEWNDRQMKHLVDHTR--------PPVVPNPNIEFDRQRPRALIDAYGNYRGESKFN 1119
             R+ E  +   KH     R           + N N   +RQ  RALIDAYGN RG+   N
Sbjct: 336  IRDEETREWPRKHFYGDYRNCSEGSLNSYKLSNGN---ERQTLRALIDAYGNDRGQGMSN 392

Query: 1118 GKPLKIEPLDVNGINSDATTRRWQNTEEEEYVWEDMSPTLADRSRTDELIPSKLPLRNSS 939
             KP+++E LDVNG+ +  T R WQNTEEEE+ WEDMSPTLADR R++E   S +    S 
Sbjct: 393  SKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR-RSNEFSVSSVATFGSI 451

Query: 938  AREGFGRSSDSISEPDYRAGYWPMQPQLPAVDNTSNFSGDGGLIFSSNNLGDTGAKSLGG 759
                 G  S+  S  +        Q QL A+D +S    D                SL  
Sbjct: 452  GARPAGLESNRSSRSN--------QTQL-ALDESSTIPED-------------AVPSLSS 489

Query: 758  FGNLNNATQIQGSKYSREPW-NVHPXXXXXXXXXSKVSGNANQMSFPSIG-SALSGGQRV 585
               LN   QIQ  +Y ++ W N +P         +K  G    + F + G S+L G + V
Sbjct: 490  GHGLN---QIQRPRYPQDAWSNSYPFSQSSHQLHAKGRGRDFWIPFSASGISSLGGEKNV 546

Query: 584  P---------------------STMDNTEVLSSMTHTTLVEKHFGQNFHSPLMASQGLSQ 468
            P                     S   + + ++ +T   ++    G     P+   +    
Sbjct: 547  PLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGA--WPPVNVPKSQPP 604

Query: 467  TTHQNQI-----KGQFGLLDANRTQMNQS--------VKFDSFERKAGTVENMSQLPNQL 327
              H N       +  F  L+     MNQ          +FD+FE K  +++ + QLP Q 
Sbjct: 605  NAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQLPGQR 664

Query: 326  SGSVFSNNHRQGPVNPLQSQVLGSMAQENFVTPINAHVPSPLPPQPMXXXXXXXXXXXXX 147
                 +   R      LQ     + A+++F++     +P  L    M             
Sbjct: 665  P----ALQQRNSLHGSLQPHFPPNDARDSFLSSATGPLPPRLLAPSMNHGYSPQMHGAGI 720

Query: 146  GVMPLNRLS------GIPPIPNTSFQVQXXXXXXXXXXXXXXXXXXXXSQNVGP 3
             ++P N +        IP +P  S  +Q                    +QN GP
Sbjct: 721  SMVPSNPIPVAQPPLSIPNMPTGSLHLQGGAMPPLPPGPRPTSQMMPAAQNAGP 774