BLASTX nr result
ID: Aconitum23_contig00000210
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum23_contig00000210
(4496 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKU19344.1| RNA-dependent RNA polymerase [Red clover vein mos... 1035 0.0
ref|YP_002647021.1| RNA-dependent RNA polymerase [Red clover vei... 1031 0.0
gb|ACM45985.1| replicase polyprotein [Helleborus net necrosis vi... 1018 0.0
dbj|BAL03071.1| replicase [Helleborus net necrosis virus] 1011 0.0
ref|YP_002574614.1| putative replicase polyprotein [Helleborus n... 1011 0.0
ref|YP_001430021.1| replicase [Coleus vein necrosis virus] gi|15... 1010 0.0
emb|CAH55773.1| replicase [Poplar mosaic virus (ATCC PV257)] 1009 0.0
ref|NP_066258.1| polyprotein [Hop latent virus] gi|10241913|dbj|... 1003 0.0
emb|CDK36471.1| polyprotein [Hop latent virus] 1000 0.0
gb|AJR19303.1| viral replicase [Hop latent virus] 999 0.0
gb|AIZ76625.1| replicase polyprotein [Elderberry carlavirus C] 998 0.0
ref|YP_009126731.1| RNA-dependent RNA polymerase [Alfalfa latent... 994 0.0
ref|YP_009158846.1| replicase [Pea streak virus] gi|846453631|gb... 988 0.0
ref|YP_001165301.1| replicase [Phlox virus S] gi|145206988|gb|AB... 987 0.0
gb|AIZ76631.1| replicase polyprotein [Elderberry carlavirus D] 980 0.0
ref|YP_004936159.1| unnamed protein product [Garlic common laten... 980 0.0
ref|YP_001552317.1| replicase [Phlox Virus B] gi|157932100|gb|AB... 978 0.0
gb|AIZ76613.1| replicase polyprotein [Elderberry carlavirus A] 976 0.0
emb|CAO78688.1| polyprotein [Chrysanthemum virus B] 974 0.0
emb|CAK54343.1| polyprotein, partial [Chrysanthemum virus B] 974 0.0
>gb|AKU19344.1| RNA-dependent RNA polymerase [Red clover vein mosaic virus]
Length = 1932
Score = 1035 bits (2676), Expect = 0.0
Identities = 576/1206 (47%), Positives = 746/1206 (61%), Gaps = 45/1206 (3%)
Frame = -3
Query: 4479 FVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDSAFSF 4300
F MP GFQ THKH V C+ GR+SFTFRKL R S + + +V+ G D
Sbjct: 751 FTMPAGFQETHKHKVSECTEGRVSFTFRKLR----IRESEL----LEEVKPDGRDPELIE 802
Query: 4299 TPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPENFVRIDVPGDGYCFY 4120
E D A + V+ D IT + PE+ + I+VPGDG CF+
Sbjct: 803 ELKTEG-DSASSEVII-FDVEIT---------------AIDLTPEHLISIEVPGDGNCFW 845
Query: 4119 HAVGYYINLGGRELKREAFRTCTAEELA---QPLVAEQMHGANPAEGEAICLVARKLKMR 3949
H++GY++ + G ELKR A R EL Q+ G N AE E +C ++ +
Sbjct: 846 HSLGYFLGVEGPELKRIA-RKRFKNELGLCNDDFPNAQLEGDNFAELEVVCACSKLFNIE 904
Query: 3948 -------------------------------XYNVAIPRNGCVLTAICEALNRTRADVLK 3862
Y +PRN CV AI EAL R+ +V
Sbjct: 905 FIVCSLEGRESMRFMPPGEISICVLLGFGHAHYKPMVPRNDCVPRAIAEALGRSLREVFG 964
Query: 3861 VLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTFY 3682
VLSR++ + + L G+ I +E F IR +D G +ER F
Sbjct: 965 VLSRKENSGLYALLGGSGGVDIDDLEGFFNLFDIRAYVDLDGKWYSLNPEGHLERHFNLN 1024
Query: 3681 DDHLAFVKRHNGFCFSSRNSTHAPGAAVGR---SALALLDCAGSKINAVFELSRAEKLIE 3511
D H+ F + F ++ + + + L +G+ + ++ RA L+
Sbjct: 1025 DGHMTFKPKDGVELFKTKKACVLQKGKIKKIPEDCALKLRLSGTVLPYNWDARRANALLG 1084
Query: 3510 SLHSGLTGIMSSELFN--SRSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLG 3337
S+H TG++SSELFN + L ++ R V ILGTFG+GKS+L + F + G
Sbjct: 1085 SMHVARTGVLSSELFNGVALRTLQGPSKQENQQREVCAILGTFGAGKSSLLSRLFPRLKG 1144
Query: 3336 KHIHFVSPRKVLAGAFRDDLKALRDQDGAE--ISKEARK-GWVVCTFETFVLNHKKVGST 3166
IHFVSPRK LA R + + + G E + K RK W V TFE F+LN ++
Sbjct: 1145 CAIHFVSPRKGLAADMRGLMSSALNCTGPETKLKKAIRKANWEVSTFELFLLNIDRIKDG 1204
Query: 3165 HVVILDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLL 2986
V LDE+QLFPPGYLD + LL I++ GDPCQS+YD+E+DR L LG+++D+LL
Sbjct: 1205 TTVFLDEIQLFPPGYLDTVCGLLSDGCEIFVIGDPCQSDYDSEKDRSILAELGSDVDRLL 1264
Query: 2985 GDESYRYATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLD---ELSVCLAEIILV 2815
+ Y+Y ++S RF + F GRLPC F+ + + NGL+ E+ E++LV
Sbjct: 1265 LGKDYKYVSISRRFGNARFEGRLPCNFLTGTLTFDEPFVCQNGLNGALEVDRKFREVVLV 1324
Query: 2814 SSFAEKTAIRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHV 2635
SSF EK I+A G ++LTFGESTG T + ++IS+SS SE RWLTALSR RK++
Sbjct: 1325 SSFMEKHVIQAIYGESQEVLTFGESTGRTFNFGTLLISESSILTSEKRWLTALSRFRKNI 1384
Query: 2634 SLFSTLEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVA 2455
+ LE +A+ F G+VL FL+ + + DL ++PG P+F + G F V
Sbjct: 1385 CFLNALESSFDEIAKRFSGKVLGSFLSKQAKVDDLLKMLPGNPKFVESFVQPIGKGFGVF 1444
Query: 2454 ELKLVGDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAK 2275
E KL+GDPWLKS +FLGQ +M + + + + Q F+THL + E ET R ++ ++AK
Sbjct: 1445 EEKLMGDPWLKSELFLGQDEEMGDEQMAEFIEQQSWFKTHLPKCERETLRARWVHRIMAK 1504
Query: 2274 EHREKRMGRIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFS 2095
E RE + ++QF++DH KN G RLTNAAERFE+IYPRH+ SDT+TF+MA +KRLRFS
Sbjct: 1505 EDREFHFKDLRTEQFADDHGKNRGARLTNAAERFESIYPRHKASDTLTFLMAVKKRLRFS 1564
Query: 2094 KPAIEMAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENH 1915
KP +E AK+ A ++GPF+L+EFLK +PL +LMAE+V +FE KK+SKS A I+NH
Sbjct: 1565 KPHVECAKIKQADMFGPFLLKEFLKKIPLPNRGRPELMAEAVRDFELKKISKSGATIQNH 1624
Query: 1914 AGRSNSDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKL 1735
AGRS DW +D GLVF KSQ CTK+GNR AKAAQ+IVCFQH VLCRFAPYMRYIEK L
Sbjct: 1625 AGRSCKDWLIDLGLVFSKSQLCTKWGNRFIKAKAAQTIVCFQHAVLCRFAPYMRYIEKIL 1684
Query: 1734 HQVLPQNFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLR 1555
+ LP+N YIHSGK L+ELN WVKI KF GICTESDYEAFDASQDH+IMAFE+ LMRYL
Sbjct: 1685 AEALPRNLYIHSGKSLEELNEWVKIAKFEGICTESDYEAFDASQDHYIMAFEVSLMRYLG 1744
Query: 1554 LPIDLINDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICF 1375
LP+DLI DY FIKTHLG KLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNG E+ICF
Sbjct: 1745 LPVDLIEDYKFIKTHLGCKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGSEYICF 1804
Query: 1374 AGDDMCAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMC 1195
AGDDMCA+KRLR +E FLS LKLKAKVDF A PTFCGWNL GIYK PQL++ERMC
Sbjct: 1805 AGDDMCASKRLRVSDKFEGFLSKLKLKAKVDFVASPTFCGWNLVNFGIYKLPQLVFERMC 1864
Query: 1194 IAMETNNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVA 1015
IA E N LA C+DNYA+EVSYAYKLGE A M+E+E + YNCVR+I+K +++KS VA
Sbjct: 1865 IAKERNVLADCIDNYAIEVSYAYKLGELATNHMNEEEMEAFYNCVRVIIKNMHIMKSDVA 1924
Query: 1014 DLFKDS 997
D+F+++
Sbjct: 1925 DIFRNN 1930
>ref|YP_002647021.1| RNA-dependent RNA polymerase [Red clover vein mosaic virus]
gi|224579201|gb|ACN58188.1| RNA-dependent RNA polymerase
[Red clover vein mosaic virus]
Length = 1932
Score = 1031 bits (2665), Expect = 0.0
Identities = 575/1211 (47%), Positives = 748/1211 (61%), Gaps = 50/1211 (4%)
Frame = -3
Query: 4479 FVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDSAFSF 4300
F MP GFQ THKH V C+ GR+SFTFR+L R+ + + P
Sbjct: 751 FTMPAGFQETHKHKVSECTEGRVSFTFRRL---------RIRESGLLEEIKP-------- 793
Query: 4299 TPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCA-EPCPENFVRIDVPGDGYCF 4123
DG ++E + + T E + +V+ A + PE+ + I+VPGDG CF
Sbjct: 794 -------DGRGPELIE--ELKMEGDSTSSEVIIFDVEITAIDLTPEHLISIEVPGDGNCF 844
Query: 4122 YHAVGYYINLGGRELKREAFRTCTAEELA---QPLVAEQMHGANPAEGEAICLVARKLKM 3952
+H++GY++ + G ELKR A R EL Q+ G N AE E +C ++ +
Sbjct: 845 WHSLGYFLGVEGPELKRIA-RKRFKNELGLCNDDFPNAQLEGDNFAELEVVCACSKLFNI 903
Query: 3951 R-------------------------------XYNVAIPRNGCVLTAICEALNRTRADVL 3865
Y +PRN CV AI EAL R+ +V
Sbjct: 904 EFIVCSLEGRESMRFMPPGEINICVLLGFGHAHYKPMVPRNDCVPRAIAEALGRSLREVF 963
Query: 3864 KVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTF 3685
VLSR++ + + L G+ I +E F IR +D G +ER F
Sbjct: 964 GVLSRKENSSLYALLGGSGGVDIDDLEDFFNLFDIRAYVDLDGKWYSLNPKGHLERHFNL 1023
Query: 3684 YDDHLAFVKRHNGFCFSSRNSTHAPGAAVGRSALALLDCA------GSKINAVFELSRAE 3523
D H+ F + F ++ A G++ DCA G+ + ++ RA
Sbjct: 1024 NDGHMTFKPKDGVELFKTKK---ACVLQKGKNKKLPEDCALKLRLSGTVLPYNWDARRAN 1080
Query: 3522 KLIESLHSGLTGIMSSELFNS---RSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFF 3352
L+ S+H TG++SSELFN R+ P ++ R V ILGTFG+GKS+L + F
Sbjct: 1081 ALLGSMHVARTGVLSSELFNGVALRTVQGP-SKQENQQREVCAILGTFGAGKSSLLSRLF 1139
Query: 3351 QKSLGKHIHFVSPRKVLAGAFRDDLKALRDQDGAE--ISKEARK-GWVVCTFETFVLNHK 3181
+ G IHFVSPRK LA R + + + G E + K RK W V TFE F+LN
Sbjct: 1140 PRLKGCAIHFVSPRKGLATDMRGLMSSALNCTGPETKMKKAIRKANWEVSTFEIFLLNID 1199
Query: 3180 KVGSTHVVILDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNN 3001
++ V LDE+QLFPPGYLD + LL I++ GDPCQS+YD+E+DR L LG++
Sbjct: 1200 RIKDGTTVFLDEIQLFPPGYLDTVCGLLSDGCEIFVIGDPCQSDYDSEKDRSILTELGSD 1259
Query: 3000 LDKLLGDESYRYATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLD---ELSVCLA 2830
+D+LL + Y+Y + S RF + F GRLPC F+ + + NGL+ E+
Sbjct: 1260 VDRLLLGKDYKYVSTSRRFGNARFEGRLPCFFLTGTLTFDEPFVCQNGLNGALEVDRKFR 1319
Query: 2829 EIILVSSFAEKTAIRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSR 2650
E++LVSSF EK I+A G ++LTFGESTG T + ++IS+SS SE RWLTALSR
Sbjct: 1320 EVVLVSSFMEKHVIQAIYGESQEVLTFGESTGRTFNFGTLLISESSILTSEKRWLTALSR 1379
Query: 2649 ARKHVSLFSTLEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGA 2470
RK++ + LE +A+ F G+VL FL+ + + DL ++PG P+F + G
Sbjct: 1380 FRKNICFLNALESSFDEIAKRFSGKVLGSFLSKQAKVDDLLKMLPGNPKFVESFVQPIGK 1439
Query: 2469 DFMVAELKLVGDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFID 2290
F V E KL+GDPWLKS +FLGQ +M + + + + Q F+THL + E ET R ++
Sbjct: 1440 SFGVFEEKLMGDPWLKSELFLGQDEEMADEQMAEFIEQQSWFKTHLPKCERETLRARWVH 1499
Query: 2289 DMLAKEHREKRMGRIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARK 2110
++AKE RE + ++QF++DH KN G RLTNAAERFE+IYPRH+ SDT+TF+MA +K
Sbjct: 1500 RIMAKEDREFHFKDLRTEQFADDHGKNRGARLTNAAERFESIYPRHKASDTLTFLMAVKK 1559
Query: 2109 RLRFSKPAIEMAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAA 1930
RLRFSKP +E AK+ A ++GPF+L+EFLK VPL +LMAE+V +FE KK+SKS A
Sbjct: 1560 RLRFSKPHVECAKIKQADMFGPFLLKEFLKKVPLPNRGRPELMAEAVRDFELKKISKSGA 1619
Query: 1929 IIENHAGRSNSDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRY 1750
I+NHAGRS DW +D GLVF KSQ CTK+GNR AKAAQ+IVCFQH VLCRFAPYMRY
Sbjct: 1620 TIQNHAGRSCKDWLIDLGLVFSKSQLCTKWGNRFIKAKAAQTIVCFQHAVLCRFAPYMRY 1679
Query: 1749 IEKKLHQVLPQNFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIEL 1570
IEK + LP+N YIHSGK L+ELN WVK+ KF GICTESDYEAFDASQDH+IMAFE+ L
Sbjct: 1680 IEKNPSEALPRNLYIHSGKSLEELNEWVKVAKFEGICTESDYEAFDASQDHYIMAFEVSL 1739
Query: 1569 MRYLRLPIDLINDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGK 1390
MRYL LP+DLI DY FIKTHLG KLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNG
Sbjct: 1740 MRYLGLPVDLIEDYKFIKTHLGCKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGS 1799
Query: 1389 EFICFAGDDMCAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLI 1210
E+ICFAGDDMCA+KRLR +E FLS LKLKAKVDF A PTFCGWNL GIYK PQL+
Sbjct: 1800 EYICFAGDDMCASKRLRVSDKFEGFLSKLKLKAKVDFVASPTFCGWNLVNFGIYKLPQLV 1859
Query: 1209 YERMCIAMETNNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLL 1030
+ERMCIA E N LA C+DNYA+EVSYAYKLGE A MDE+E + YNCV++I+K +++
Sbjct: 1860 FERMCIAKERNILADCIDNYAIEVSYAYKLGELATNHMDEEEMEAFYNCVKVIIKNMHIM 1919
Query: 1029 KSSVADLFKDS 997
KS VA++F+++
Sbjct: 1920 KSDVANIFRNN 1930
>gb|ACM45985.1| replicase polyprotein [Helleborus net necrosis virus]
Length = 1956
Score = 1018 bits (2632), Expect = 0.0
Identities = 561/1194 (46%), Positives = 729/1194 (61%), Gaps = 36/1194 (3%)
Frame = -3
Query: 4479 FVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDSAFSF 4300
FVMP G Q THKH V G R+S TFR L S N SD DS
Sbjct: 788 FVMPGGLQQTHKHRVSGTRGSRISLTFRMLREGAYLSSDESANGFGSD-----HDS---- 838
Query: 4299 TPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPENFVRIDVPGDGYCFY 4120
E +DA + T G KL + F I+VP DG CF+
Sbjct: 839 ---------------EEEDALAEASETFGVKLDLRKTHPLSA----FKPIEVPADGDCFW 879
Query: 4119 HAVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMHGANPAEGEAI---CLVAR----- 3964
HAVGY I L G E+K+ E + + +Q+ AE EA C++
Sbjct: 880 HAVGYLIGLNGVEVKKAVAGRAKVELKSNEALTKQLGNKVFAENEAFAAACVILDMSITF 939
Query: 3963 ----------------------KLKMRXYNVAIPRNGCVLTAICEALNRTRADVLKVLSR 3850
KL+ + +PRN CV+ A AL+R+ D+ KVL R
Sbjct: 940 IISEEGHSVIFSKEGSTLMLYIKLQHTHCSPLLPRNDCVIVAGASALSRSVKDIYKVLMR 999
Query: 3849 EDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTFYDDHL 3670
+Y I +L G GL++ ++ Q + F I I+ GS++RCFT +H+
Sbjct: 1000 REYALIFKQLCAGEGLSLMLLGQFFSIFDIHAYINFEGEHMEVNESGSLKRCFTVEQEHI 1059
Query: 3669 AFVKRHNGFCFSSRNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAEKLIESLHSGLT 3490
+ C + + +V +L +L G+++ + E RA +L SLHSG T
Sbjct: 1060 THNVKMG--CSAITPTMTGSNNSVSLKSLKVLKTCGTELTYIVEEERARRLAGSLHSGTT 1117
Query: 3489 GIMSSELFNSRSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLGKHIHFVSPR 3310
G + S LFN L+ R V ILGTFGSGKSTL+++ F+K+ GK I FVSPR
Sbjct: 1118 GAVCSSLFNGTPNLLQGLNPDWEARNVVAILGTFGSGKSTLFKELFKKNPGKLICFVSPR 1177
Query: 3309 KVLAGAFRDDLKALRDQDGAE---ISKEARKGWVVCTFETFVLNHKKVGSTHVVILDEVQ 3139
+ LA ++ + +G + + + + VCTFETF+ K + + H ++LDE+Q
Sbjct: 1178 RSLAQEIKESVFGKSATEGGKFKIVRNKKNCNFNVCTFETFLKLAKGLKAGHTLVLDEIQ 1237
Query: 3138 LFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYRYAT 2959
L+PPGYLDL+A L+P+ + + GDPCQS YD+E DR +++ KLL Y++ T
Sbjct: 1238 LYPPGYLDLVACLVPRSCHLSVVGDPCQSNYDSEGDRSIFAGAASDIHKLLAGAKYKFVT 1297
Query: 2958 LSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLDE---LSVCLAEIILVSSFAEKTAI 2788
S RF F+GRLPC E++ + + DE LS E+ LV F EK I
Sbjct: 1298 RSRRFFNKTFLGRLPCAMDENKQTVSEEYFMARSFDEVRSLSKVFTEVFLVPGFDEKKII 1357
Query: 2787 RAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTLEGH 2608
+A+ ILTFGESTG T ++ +++I+QS E RW+TALS +++ + E
Sbjct: 1358 KAHFPNCENILTFGESTGRTFEYGSILITQSGFSVCEQRWITALSGFSRNLLFLNLTEAS 1417
Query: 2607 ESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVGDPW 2428
+AE + R L F ++++ DL+ ++PG P FA +P G D V E KL GDPW
Sbjct: 1418 FEAIAENMDDRALGKFFTQSASIDDLRKILPGEPLFADHYVPKLGKDHCVREDKLAGDPW 1477
Query: 2427 LKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKRMGR 2248
LK+ +FLGQ+ D+ + + + + F+THL EME+ R +++ + AKEHRE R G
Sbjct: 1478 LKTMVFLGQEEDVEKVEIEEAILAEPWFKTHLPLCEMESVRASWVQNFKAKEHREVRKGY 1537
Query: 2247 IVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEMAKL 2068
+VSDQF+++HSKN G LTNAAERFEAIYPRH+ SDTVTF+MA RKRLRFS P +E AKL
Sbjct: 1538 LVSDQFTDEHSKNRGKVLTNAAERFEAIYPRHKNSDTVTFLMAVRKRLRFSNPMVECAKL 1597
Query: 2067 ASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNSDWP 1888
A+ YG ++L+ FLK VPLK + + MA SV +FE+KK SKSAA IENHAGRS DW
Sbjct: 1598 NEARGYGKYLLDNFLKFVPLKAKHNPEFMARSVRDFEEKKTSKSAATIENHAGRSCRDWL 1657
Query: 1887 VDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLPQNFY 1708
D GL+FMKSQ CTKF NR ++AKAAQSIVCFQH VLCRFAPYMRYIE KL + LP+NFY
Sbjct: 1658 ADMGLIFMKSQICTKFDNRFRVAKAAQSIVCFQHSVLCRFAPYMRYIEMKLQEALPKNFY 1717
Query: 1707 IHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLINDY 1528
IHSGKGL+ELN WV G F GICTESDYEAFDASQD I+AFE+ M YL +P DLI DY
Sbjct: 1718 IHSGKGLEELNKWVLSGNFRGICTESDYEAFDASQDQHIVAFELACMEYLGIPKDLIADY 1777
Query: 1527 IFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMCAAK 1348
+IKTHLGSKLG+FAIMRFSGEASTFLFNTMANMLFTFLRY+L GKEFI FAGDDMCA+K
Sbjct: 1778 CYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFLRYELTGKEFISFAGDDMCASK 1837
Query: 1347 RLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETNNLA 1168
RLR + +E FL LKLKAKV+FTA PTFCGW L DGI+KKPQL++ER+CIA ETNNLA
Sbjct: 1838 RLRVSTEHESFLGKLKLKAKVNFTANPTFCGWCLTTDGIFKKPQLVFERLCIAKETNNLA 1897
Query: 1167 SCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLF 1006
+C+DNYA+EVSYAYKLGE A++ M ++ S+YNCVR+I+K ++LLKS VA F
Sbjct: 1898 NCIDNYAIEVSYAYKLGEAAVQHMSIEDMESYYNCVRIIIKNKHLLKSDVAKTF 1951
>dbj|BAL03071.1| replicase [Helleborus net necrosis virus]
Length = 1956
Score = 1011 bits (2615), Expect = 0.0
Identities = 560/1195 (46%), Positives = 729/1195 (61%), Gaps = 37/1195 (3%)
Frame = -3
Query: 4479 FVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDSAFSF 4300
FVMP G Q THKH V G R+S TFR L + S +N SD + + +F
Sbjct: 788 FVMPSGLQQTHKHRVFGTKGNRISLTFRMLRDSAYLSSDGSDNGLGSDHD---EEDHANF 844
Query: 4299 TPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPEN-FVRIDVPGDGYCF 4123
T S E T G KL + P N F I+VP DG CF
Sbjct: 845 TESSE---------------------TFGVKLDLRKTH-----PLNAFKPIEVPADGDCF 878
Query: 4122 YHAVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMHGANPAEGEAIC----------- 3976
+HAVGY I L G E+K+ E A + QM AE EA
Sbjct: 879 WHAVGYLIGLNGSEVKKAVAERSKVELKANAELTAQMGNKVFAENEAFAAACVLLDISIT 938
Query: 3975 -------------------LVARKLKMRXYNVAIPRNGCVLTAICEALNRTRADVLKVLS 3853
++ KL+ + +PRN CV+ A AL+R DV KVL
Sbjct: 939 FIISDEGHSVIFNKEGSTLMLYIKLQNTHCSPLLPRNDCVIVAGASALSRPVKDVYKVLM 998
Query: 3852 REDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTFYDDH 3673
R ++ I +L G GL++ ++ Q + F I I+ GS++RCFT +H
Sbjct: 999 RREHSLIFKQLCAGEGLSLMLLGQFFSIFDIHAYINFEGEHMEVNESGSLKRCFTVEQEH 1058
Query: 3672 LAFVKRHNGFCFSSRNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAEKLIESLHSGL 3493
+A + C + + AV +L +L G+++ E RA +L +SLHSG
Sbjct: 1059 IAHNVKMG--CSAITPTMTGSNNAVSLKSLKILKACGTELVYTVEEERARRLADSLHSGT 1116
Query: 3492 TGIMSSELFNSRSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLGKHIHFVSP 3313
TG + S LFN L+ R V ILGTFGSGKSTL++ F+++ GK I FVSP
Sbjct: 1117 TGAVCSSLFNGTPNLLQGLNPDWEARNVVAILGTFGSGKSTLFKDLFRRNPGKLICFVSP 1176
Query: 3312 RKVLAGAFRDDL--KALRDQDGAEISKEARK-GWVVCTFETFVLNHKKVGSTHVVILDEV 3142
R+ LA ++ + K +I + + + VCTFETF+ K + + H ++LDE+
Sbjct: 1177 RRSLAQEIKESVFGKCTSPDGKFKIVRNKKNCNFNVCTFETFLKLAKGLKAGHTLVLDEI 1236
Query: 3141 QLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYRYA 2962
QL+PPGYLDL+A L+P+ +++ GDPCQS YD+E DR +++ K+L + Y++
Sbjct: 1237 QLYPPGYLDLVACLVPRSCHLFVVGDPCQSNYDSEGDRSIFSGAASDIHKMLANAKYKFV 1296
Query: 2961 TLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLDEL---SVCLAEIILVSSFAEKTA 2791
T S RF F GRLPC +S+ + +E+ S E+ LV F EK
Sbjct: 1297 TRSRRFFNKTFSGRLPCAMDDSKLVVSEEYFMARSFEEVRSFSKVFTEVFLVPGFDEKKI 1356
Query: 2790 IRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTLEG 2611
I+A+ ILTFGESTG T ++ +++I+QS E RW+TALSR +++ + E
Sbjct: 1357 IKAHFPNCENILTFGESTGRTFEYGSILITQSGFSVCEQRWITALSRFSRNLLFLNLTEA 1416
Query: 2610 HESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVGDP 2431
+AE + R L F ++++ DL+ ++PG P FA +P G D V E KL GDP
Sbjct: 1417 SFEAIAENMDDRALGKFFTQSASIDDLRKILPGEPHFADYYVPKLGKDHCVREDKLAGDP 1476
Query: 2430 WLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKRMG 2251
WLK+ +FLGQ+ D+ + + + + F+THL EME+ R +++ + AKE+RE R G
Sbjct: 1477 WLKTMVFLGQEEDVEKSEIEEAILAEPWFKTHLPLCEMESVRASWVQNFKAKENREVRKG 1536
Query: 2250 RIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEMAK 2071
+VSDQF+++HSKN G LTNAAERFEAIYPRH+ SDTVTF+MA +KRLRFSKP +E AK
Sbjct: 1537 YLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAK 1596
Query: 2070 LASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNSDW 1891
L A+ YG ++L+ FLK VPLK + + MA SV +FE+KK SKSAA IENH+GRS DW
Sbjct: 1597 LNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDW 1656
Query: 1890 PVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLPQNF 1711
D GL+FMKSQ CTKF NR ++AKAAQSIVCFQH VLCRFAPYMRYIE KL + LP+NF
Sbjct: 1657 LADVGLIFMKSQICTKFDNRFRVAKAAQSIVCFQHSVLCRFAPYMRYIEMKLQEALPKNF 1716
Query: 1710 YIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLIND 1531
YIHSGKGL+ELN WV G F GICTESDYEAFDASQD I+AFE+ M YL LP DLI D
Sbjct: 1717 YIHSGKGLEELNKWVLGGNFRGICTESDYEAFDASQDQHIVAFELACMEYLGLPKDLIAD 1776
Query: 1530 YIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMCAA 1351
Y +IKTHLGSKLG+FAIMRFSGEASTFLFNTMANMLFTFLRY+L GKEFI FAGDDMCA+
Sbjct: 1777 YCYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFLRYELTGKEFISFAGDDMCAS 1836
Query: 1350 KRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETNNL 1171
KRLR +E FL LKLKAKV+FT PTFCGW L DGI+KKPQL++ER+CIA ETNNL
Sbjct: 1837 KRLRVSVEHESFLGKLKLKAKVNFTTNPTFCGWCLTTDGIFKKPQLVFERLCIAKETNNL 1896
Query: 1170 ASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLF 1006
A+C+DNYA+E+SYAYKLGE A+ M ++ S+YNCVR+I+K ++LLKS VA F
Sbjct: 1897 ANCIDNYAIEISYAYKLGEAAVRHMSIEDMESYYNCVRIIIKNKHLLKSDVAKTF 1951
>ref|YP_002574614.1| putative replicase polyprotein [Helleborus net necrosis virus]
gi|222142710|gb|ACM45979.1| putative replicase
polyprotein [Helleborus net necrosis virus]
Length = 1956
Score = 1011 bits (2613), Expect = 0.0
Identities = 560/1195 (46%), Positives = 728/1195 (60%), Gaps = 37/1195 (3%)
Frame = -3
Query: 4479 FVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDSAFSF 4300
FVMP G Q THKH V G R+S TFR L + S +N SD + + F
Sbjct: 788 FVMPSGLQQTHKHRVFGTKGNRISLTFRMLRDSAYLSSDGSDNGLGSDHD---EEDHADF 844
Query: 4299 TPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPEN-FVRIDVPGDGYCF 4123
T S E T G KL + P N F I+VP DG CF
Sbjct: 845 TESSE---------------------TFGVKLDLRKTH-----PLNAFKPIEVPADGDCF 878
Query: 4122 YHAVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMHGANPAEGEAIC----------- 3976
+HAVGY I L G E+K+ E A + QM AE EA
Sbjct: 879 WHAVGYLIGLNGSEVKKAVAERSKVELKANAELTAQMGNKVFAENEAFAAACVLLDISIT 938
Query: 3975 -------------------LVARKLKMRXYNVAIPRNGCVLTAICEALNRTRADVLKVLS 3853
++ KL+ + +PRN CV+ A AL+R DV KVL
Sbjct: 939 FIISDEGHSVIFNKEGSTLMLYIKLQNTHCSPLLPRNDCVIVAGASALSRPVKDVYKVLM 998
Query: 3852 REDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTFYDDH 3673
R ++ I +L G GL++ ++ Q + F I I+ GS++RCFT +H
Sbjct: 999 RREHSLIFKQLCAGEGLSLMLLGQFFSIFDIHAYINFEGEHMEVNESGSLKRCFTVEQEH 1058
Query: 3672 LAFVKRHNGFCFSSRNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAEKLIESLHSGL 3493
+A + C + + AV +L +L G+++ E RA +L +SLHSG
Sbjct: 1059 IAHNVKMG--CSAIAPTMTGSNNAVSLKSLKVLKACGTELVYTVEEERARRLADSLHSGT 1116
Query: 3492 TGIMSSELFNSRSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLGKHIHFVSP 3313
TG + S LFN L+ R V ILGTFGSGKSTL++ F+++ GK I FVSP
Sbjct: 1117 TGAVCSSLFNGTPNLLQGLNPDWEARNVVAILGTFGSGKSTLFKDLFKRNPGKLICFVSP 1176
Query: 3312 RKVLAGAFRDDL--KALRDQDGAEISKEARK-GWVVCTFETFVLNHKKVGSTHVVILDEV 3142
R+ LA ++ + K +I + + + VCTFETF+ K + + H ++LDE+
Sbjct: 1177 RRSLAQEIKESVFGKCTSPDGKFKIVRNKKNCNFNVCTFETFLKLAKGLKAGHTLVLDEI 1236
Query: 3141 QLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYRYA 2962
QL+PPGYLDL+A L+P+ +++ GDPCQS YD+E DR +++ K+L + Y++
Sbjct: 1237 QLYPPGYLDLVACLVPRSCHLFVVGDPCQSNYDSEGDRSIFSGAASDIHKMLANAKYKFV 1296
Query: 2961 TLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLDEL---SVCLAEIILVSSFAEKTA 2791
T S RF F GRLPC +S+ + +E+ S E+ LV F EK
Sbjct: 1297 TRSRRFFNKTFSGRLPCAMDDSKLVVSEEYFMARSFEEVRSFSKVFTEVFLVPGFDEKKI 1356
Query: 2790 IRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTLEG 2611
I+A+ ILTFGESTG T ++ +++I+QS E RW+TALSR +++ + E
Sbjct: 1357 IKAHFPNCENILTFGESTGRTFEYGSILITQSGFSVCEQRWITALSRFSRNLLFLNLTEA 1416
Query: 2610 HESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVGDP 2431
+AE + R L F ++++ DL+ ++PG P FA +P G D V E KL GDP
Sbjct: 1417 SFEAIAENMDDRALGKFFTQSASIDDLRKILPGEPHFADYYVPKLGKDHCVREDKLAGDP 1476
Query: 2430 WLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKRMG 2251
WLK+ +FLGQ+ D+ + + + + F+THL EME+ R +++ + AKE+RE R G
Sbjct: 1477 WLKTMVFLGQEEDVEKSEIEEAILAEPWFKTHLPLCEMESVRASWVQNFKAKENREVRKG 1536
Query: 2250 RIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEMAK 2071
+VSDQF+++HSKN G LTNAAERFEAIYPRH+ SDTVTF+MA +KRLRFSKP +E AK
Sbjct: 1537 YLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAK 1596
Query: 2070 LASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNSDW 1891
L A+ YG ++L+ FLK VPLK + + MA SV +FE+KK SKSAA IENH+GRS DW
Sbjct: 1597 LNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDW 1656
Query: 1890 PVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLPQNF 1711
D GL+FMKSQ CTKF NR ++AKAAQSIVCFQH VLCRFAPYMRYIE KL + LP+NF
Sbjct: 1657 LADVGLIFMKSQICTKFDNRFRVAKAAQSIVCFQHSVLCRFAPYMRYIEMKLQEALPKNF 1716
Query: 1710 YIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLIND 1531
YIHSGKGL+ELN WV G F GICTESDYEAFDASQD I+AFE+ M YL LP DLI D
Sbjct: 1717 YIHSGKGLEELNKWVLGGNFRGICTESDYEAFDASQDQHIVAFELACMEYLGLPKDLIAD 1776
Query: 1530 YIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMCAA 1351
Y +IKTHLGSKLG+FAIMRFSGEASTFLFNTMANMLFTFLRY+L GKEFI FAGDDMCA+
Sbjct: 1777 YCYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFLRYELTGKEFISFAGDDMCAS 1836
Query: 1350 KRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETNNL 1171
KRLR +E FL LKLKAKV+FT PTFCGW L DGI+KKPQL++ER+CIA ETNNL
Sbjct: 1837 KRLRVSVEHESFLGKLKLKAKVNFTTNPTFCGWCLTTDGIFKKPQLVFERLCIAKETNNL 1896
Query: 1170 ASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLF 1006
A+C+DNYA+E+SYAYKLGE A+ M ++ S+YNCVR+I+K ++LLKS VA F
Sbjct: 1897 ANCIDNYAIEISYAYKLGEAAVRHMSIEDMESYYNCVRIIIKNKHLLKSDVAKTF 1951
>ref|YP_001430021.1| replicase [Coleus vein necrosis virus] gi|155007628|gb|ABS89245.1|
replicase [Coleus vein necrosis virus]
Length = 1977
Score = 1010 bits (2612), Expect = 0.0
Identities = 569/1200 (47%), Positives = 729/1200 (60%), Gaps = 39/1200 (3%)
Frame = -3
Query: 4479 FVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDSAFSF 4300
F MP GFQ THKHSV CS+GR S TFR L G + S +P VE G
Sbjct: 809 FTMPAGFQETHKHSVAECSSGRTSITFRVLK--GTEQPSAPLHPTNEKVEPGGG------ 860
Query: 4299 TPSVEAMDGAPANVVEGQDAAITTACTVGEKLG-CNVDYCAEPCPENFVRIDVPGDGYCF 4123
+V + GAP + ++G V+ P ++ DVPGDG CF
Sbjct: 861 --AVSSRLGAPEEL-----------SAFDYQIGPVRVENVGGPRAGSYTLTDVPGDGSCF 907
Query: 4122 YHAVGYYINLGGRELKREAFRTCTAEELAQPLVAE---QMHGANPAEGEAICLVARKLK- 3955
+HAVG NL G L+R A E+ AE ++ G +C VA LK
Sbjct: 908 FHAVGLSFNLTGLALRRALLDA--APEIGGMFPAEAFAELRGGGAVSDVCVCYVAHALKS 965
Query: 3954 -----------MRX------------------YNVAIPRNGCVLTAICEALNRTRADVLK 3862
MR YNV +N C L A+ E L RT+ +V +
Sbjct: 966 SIAVISHHEGCMRVFCPDNWENKIDLLHKDGHYNVVNYKNDCALLAVAETLGRTKREVTE 1025
Query: 3861 VLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTFY 3682
V+ + + +L + G GL + ++ + F I+ ++ G I +
Sbjct: 1026 VVCKAKHGGLLRSMRTGEGLKVELLGELFKIFSIKALVKCNGQLHRLNPEGKILGHYRLE 1085
Query: 3681 DDHLAFVKRHNGFCFSSRNSTHAPGAAVGR----SALALLDCAGSKINAVFELSRAEKLI 3514
D H+ K + AP + S + L+ ++++ +KL
Sbjct: 1086 DGHIQVDKG------LIKQLGSAPVKVIEHPVHGSGMVLIAAVATQLSFEINAEIGDKLA 1139
Query: 3513 ESLHSGLTGIMSSELFNSRSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLGK 3334
E L SG TG++SS+LFN R KL + RAV I G FG GKSTL ++ F+ LG
Sbjct: 1140 ECLVSGRTGVISSQLFNGRQKLTIPAGSDGKSRAVNLITGVFGCGKSTLMKRSFESGLGS 1199
Query: 3333 HIHFVSPRKVLAGAFRDDLKALRDQDGAEISKEARKGWVVCTFETFVLNHKKVGSTHVVI 3154
+FV+PR+ LA F D+L + R + + VV T+E F+ + V VVI
Sbjct: 1200 KCYFVTPRRSLADIFSDELTSGRIKTKTTV--------VVQTYEKFLRMLESVEPRDVVI 1251
Query: 3153 LDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDES 2974
DE+QLFP GY DL ++ Q+V GD CQS+YD DR L +++ +LL
Sbjct: 1252 FDEMQLFPHGYFDLTFSIMSQEVPTVCLGDLCQSDYDCATDRSELGCYQSDMQRLLQSAK 1311
Query: 2973 YRYATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLDELS-VCLAEIILVSSFAEK 2797
Y Y T SHRF S F GRLPC+F ++ + +G + L+ + + ILVSSF EK
Sbjct: 1312 YTYYTRSHRFQNSNFAGRLPCQFQPEYFTNHEDFTILHGFESLNDIAGLDCILVSSFNEK 1371
Query: 2796 TAIRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTL 2617
TA++A + TFGESTGLT + A+ IS+ S+ ASE RWLTALSR R +++ S L
Sbjct: 1372 TAVKALTFGRVSVQTFGESTGLTFNSGAIFISEVSKLASEQRWLTALSRFRMNLTFVSDL 1431
Query: 2616 EGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVG 2437
S +AE F GRVL FL+ + + DL+ L+ G P + + G + + E K+VG
Sbjct: 1432 GCDSSMLAEVFSGRVLGRFLSGKANVCDLRGLLAGSPDLQEDFPTTVGKNQGLVEEKVVG 1491
Query: 2436 DPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKR 2257
DPWLK+ +FLGQ++D E + EVF+TH R E+E R + + + AKE REKR
Sbjct: 1492 DPWLKAMLFLGQETDEQEVAPEVAEVALEVFKTHAPRCELEGVRARWHEKIQAKEFREKR 1551
Query: 2256 MGRIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEM 2077
MG +VS+QF+++HSKNNG +LTNAAERFE IYP+H+ SDTVTFIM ARKRLRFSKP +E
Sbjct: 1552 MGYLVSEQFTDEHSKNNGKKLTNAAERFETIYPKHKNSDTVTFIMGARKRLRFSKPLVEA 1611
Query: 2076 AKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNS 1897
KL AKVYG FML+ F K VPL+ ++ M +++ +FE KK+SKSAAII NHAGRS
Sbjct: 1612 RKLQDAKVYGEFMLQNFPKYVPLRKQHNKGFMDKALRDFESKKVSKSAAIIANHAGRSCR 1671
Query: 1896 DWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLPQ 1717
DW D GLVFMKSQHCTKF NR + AKAAQSIVCFQH VLCRFAPYMRYIE KL +VLP
Sbjct: 1672 DWLADVGLVFMKSQHCTKFDNRFRDAKAAQSIVCFQHAVLCRFAPYMRYIEMKLQEVLPS 1731
Query: 1716 NFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLI 1537
NFY+HSGKGLDEL+ WVK GKF GICTESDYEAFDASQD +IMAFE+++M YL +P DLI
Sbjct: 1732 NFYVHSGKGLDELSEWVKKGKFEGICTESDYEAFDASQDQYIMAFELKVMEYLGIPKDLI 1791
Query: 1536 NDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMC 1357
DY++IKTHLGSKLGNFAIMR+SGEASTFLFNTMANMLFTFLRYD+ G EFICFAGDDMC
Sbjct: 1792 ADYVYIKTHLGSKLGNFAIMRYSGEASTFLFNTMANMLFTFLRYDVKGNEFICFAGDDMC 1851
Query: 1356 AAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETN 1177
A +LR T+E FLS LKLKAKV F KPTFCGWNLC DGIYKKPQL+ ER+CIA ETN
Sbjct: 1852 ANTKLRKVDTHESFLSKLKLKAKVGFVNKPTFCGWNLCSDGIYKKPQLVLERLCIAKETN 1911
Query: 1176 NLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLFKDS 997
NL SC+DNYA+EVSYAY++ E+A RM E+E SHYNC+R+I+K ++L+KS A++FK S
Sbjct: 1912 NLTSCIDNYAIEVSYAYRMSEKATMRMSEEELDSHYNCLRIIIKNKHLMKSEAANIFKAS 1971
>emb|CAH55773.1| replicase [Poplar mosaic virus (ATCC PV257)]
Length = 1992
Score = 1009 bits (2608), Expect = 0.0
Identities = 567/1212 (46%), Positives = 745/1212 (61%), Gaps = 52/1212 (4%)
Frame = -3
Query: 4485 EVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDSAF 4306
+ F MP GFQ +HKH+V GCS GR+S TFR L G+A R+++P ++ G DS
Sbjct: 791 QCFTMPHGFQESHKHAVEGCSKGRVSLTFRVLNKRGLALVKRLSSPEPAN-GPEGDDS-- 847
Query: 4305 SFTPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCP-------ENFVRID 4147
S S EA DGA V G + + TV + N D P + F R+
Sbjct: 848 STASSAEADDGAKMVGVTGAHSRVP---TVRSPMEVNYDLYGVPIEAETFEGLDRFKRVQ 904
Query: 4146 VPGDGYCFYHAVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMHGANPAEGEAICLVA 3967
VPGDGYCF+H++G+++ L G ELK+ R + +A+Q GA AE E I V
Sbjct: 905 VPGDGYCFWHSIGFFMGLEGTELKKICKRLSKDLIESDLSLAKQYEGATFAEAEVIASVV 964
Query: 3966 RKLKM---------------------RXYNV---------AIPRNGCVLTAICEALNRTR 3877
+ Y + +P+N CV+TA EAL R+
Sbjct: 965 HHYDFSIQVYYPEDNVLWNFRCAGGEKVYTIICEGMHFEPLVPKNDCVITATVEALGRSY 1024
Query: 3876 ADVLKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIER 3697
ADV VLSR IL+++N G G++ ++E+ FGI+ I G ++
Sbjct: 1025 ADVFGVLSRVSNSHILAEVNSGEGVSSFILEEYFKLFGIQASIIWDGELICLNEIGREKK 1084
Query: 3696 CFTFYDDHLAFV---KRHNGFCFSSRNSTHAPGAAVGRSALALLDCAGSKINAVFELSRA 3526
F + H+ + K N S+N R AL++L AG++I+ RA
Sbjct: 1085 AFEIVEGHMTHLPARKAQNLPQLLSKNV-----EVFSRGALSILRKAGTEIHYNVSRRRA 1139
Query: 3525 EKLIESLHSGLTGIMSSELFNSRSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQK 3346
+L +SL G TG + S FN L+ E R VT +LGTFG+GKS L+++F K
Sbjct: 1140 CELADSLLQGSTGAICSATFNLCGSLIEHVEVKDHAREVTAVLGTFGAGKSRLFKEFISK 1199
Query: 3345 SLGKHIHFVSPRKVLAGAFRDDLKALRDQDGAEISKEARKG--------WVVCTFETFVL 3190
S G+ + FVSPRK LA A + ++ + E K+ R G W V TFE F+
Sbjct: 1200 SPGRCVTFVSPRKALAEAVKTEIFG----ESREGKKKGRNGKRDGKSANWNVFTFEVFLK 1255
Query: 3189 NHKKVGSTHVVILDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPL 3010
K VVI+DEVQL+PPGYLDL L+ V +++ GDPCQS+YD+E+DR E +
Sbjct: 1256 IAAKSKPGQVVIIDEVQLYPPGYLDLALTLMRSDVNVFVVGDPCQSDYDSEKDRAVFEGV 1315
Query: 3009 GNNLDKLLGDESYRYATLSHRFTYSGFIGRLPCRFVESE---TSDEGSIELHNGLDELSV 2839
+++ +LL +++Y++ S RF FIGRLPC+ S+ + +D L+
Sbjct: 1316 PSDISRLLANQTYKFVCRSRRFKNEIFIGRLPCKLQSSDCELREEYYCCSNFEDVDSLAE 1375
Query: 2838 CLAEIILVSSFAEKTAIRA-YVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLT 2662
++ LVSSF EK IRA Y +G + LTFGESTG+T + ++I+ + +E RWLT
Sbjct: 1376 PYRKVFLVSSFDEKRIIRAHYPDSGVQCLTFGESTGMTFKYGTILITPGATNVNERRWLT 1435
Query: 2661 ALSRARKHVSLFSTLEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMP 2482
LSR +V+ + + + + R L F ++L DL +PG P F
Sbjct: 1436 CLSRFAYNVAFLNMSGVSYPTLVDMYSNRALGKFFCGRASLDDLLEHLPGDPNFEDSFQH 1495
Query: 2481 SAGADFMVAELKLVGDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRV 2302
G + E K+ GDPWLK + L Q+ DM V ++ + F+THL RSE+E+ R
Sbjct: 1496 KIGKAAGLKEEKVAGDPWLKCMLDLSQEEDMEAEEVYEVCCAEPWFKTHLPRSELESIRA 1555
Query: 2301 AFIDDMLAKEHREKRMGRIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIM 2122
++ ++ KE RE R+ ++++QF++ HSKN+G +LTNAAERFE IYPRHR SDT TF+M
Sbjct: 1556 GWVHKIMEKEAREVRIKDLITNQFTDQHSKNHGVKLTNAAERFETIYPRHRASDTATFLM 1615
Query: 2121 AARKRLRFSKPAIEMAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLS 1942
A +KRLRFSKP IEMAKL A+++G ML+ FLK VPLK G + + M + +FE KK S
Sbjct: 1616 AVKKRLRFSKPHIEMAKLREAELFGESMLKLFLKHVPLKEGHNCEFMERAKRDFELKKTS 1675
Query: 1941 KSAAIIENHAGRSNSDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAP 1762
KSAA IENHA RS DW D GLVFMKSQ CTK+ NR + AKAAQSIVCFQH VLCRFAP
Sbjct: 1676 KSAATIENHAQRSCRDWLADVGLVFMKSQLCTKWDNRFRNAKAAQSIVCFQHAVLCRFAP 1735
Query: 1761 YMRYIEKKLHQVLPQNFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAF 1582
YMRYIE KL++VLP NFYIHSGK L+EL+ WVK KFSG+CTESDYEAFDASQD +IMAF
Sbjct: 1736 YMRYIEMKLNEVLPPNFYIHSGKSLEELDVWVKRYKFSGVCTESDYEAFDASQDQYIMAF 1795
Query: 1581 EIELMRYLRLPIDLINDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYD 1402
E+ +M++LRLP DLI DY +IKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTF+RYD
Sbjct: 1796 ELAVMKHLRLPADLIEDYKYIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFMRYD 1855
Query: 1401 LNGKEFICFAGDDMCAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKK 1222
+NG E +CFAGDDMCA+K LR +S ++ FL LKLKAKV FT KPTFCGWNLCPDGIYKK
Sbjct: 1856 MNGSEAVCFAGDDMCASKHLRVQSEHDKFLDKLKLKAKVQFTEKPTFCGWNLCPDGIYKK 1915
Query: 1221 PQLIYERMCIAMETNNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKK 1042
PQL+ ERMCIA ETNNLA+C+DNYA+EV++AYK+GERA RM E+E SHY+CVR IV+
Sbjct: 1916 PQLVLERMCIARETNNLANCIDNYAIEVAFAYKMGERATNRMSEEELNSHYSCVRTIVQN 1975
Query: 1041 RYLLKSSVADLF 1006
+ L+KS V +F
Sbjct: 1976 KTLIKSDVWGVF 1987
>ref|NP_066258.1| polyprotein [Hop latent virus] gi|10241913|dbj|BAB13712.1| 224 kDa
protein [Hop latent virus]
Length = 1981
Score = 1003 bits (2593), Expect = 0.0
Identities = 567/1210 (46%), Positives = 744/1210 (61%), Gaps = 43/1210 (3%)
Frame = -3
Query: 4491 GPEVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDS 4312
GP+ F MP GFQ THKHSV GCS R S TFR L R SR ++
Sbjct: 798 GPQQFEMPAGFQVTHKHSVWGCSRQRESVTFRCL------RKSRAIAQSV---------- 841
Query: 4311 AFSFTPSVEAMDGAPANVVEGQDAAIT----TACTVGEKLGC-NVDYCAEPCPE-NFVRI 4150
P+ A + + VE Q + A V KLG +V+ C ++ +
Sbjct: 842 -----PASAAPELLYEHAVEAQQVLVEKAERNADVVAYKLGSVDVNVCEALWETVSYAAL 896
Query: 4149 DVPGDGYCFYHAVGYYINLGGRELKRE------------------------AFRTCTAEE 4042
DVPGDG CF+H+VG + L ELKR A TC A
Sbjct: 897 DVPGDGSCFWHSVGLLLGLNSLELKRRCVGYRFHAEGLDAELDKAAQDGAYADDTCVAAT 956
Query: 4041 LAQPLVAEQMHGANP------AEGEAICLVARKLKMRXYNVAIPRNGCVLTAICEALNRT 3880
+A V ++ + ++ + ++ +L+ Y + RN CV+ AI + LNR
Sbjct: 957 VAVINVQIRIWNKDVDKLFTFSKADVDKVIDLQLEGEHYMPMLIRNNCVVRAIADGLNRL 1016
Query: 3879 RADVLKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIE 3700
+V VL R+ +L L +GRGL +E + FG+ ++D G
Sbjct: 1017 ECEVQHVLERKCAPVLLEDLRKGRGLEPMNLELVFSCFGVCALVDVGGRTVVYNEGGGTH 1076
Query: 3699 RCFTFYDDHLAFVKRHNGFCFSS-RNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAE 3523
FT Y++HL++ R + H G S + L G+ I +++ A
Sbjct: 1077 MQFTLYNEHLSYNPRKKKPSLDLVAGAKH--GKLFAASVIESLQAMGTMIARKPDITSAG 1134
Query: 3522 KLIESLHSGLTGIMSSELFNSRSKLVP--LTETVRLGRAVTTILGTFGSGKSTLYQKFFQ 3349
L +S TG++ S LFN +S L + + + TILGTFGSGKS +++K
Sbjct: 1135 LLADSFFEASTGVLRSSLFNDQSNLRKAFIENAGEESKPICTILGTFGSGKSYIFKKLLS 1194
Query: 3348 KSLGKHIHFVSPRKVLAGAFRDDLKALRDQDGAEISKEARKGWVVCTFETFVLNHKKVGS 3169
G+ +VSPR+ LA F+ + ++ + ++ +E W V TFETF+ +
Sbjct: 1195 GGAGRAFDYVSPRRALADEFKRSVGLVKKKGSQKVGQE---NWKVSTFETFLDRASHLLE 1251
Query: 3168 THVVILDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKL 2989
VV+LDEVQL+PPGY+DLI LL V ++L GDP QS+YDNE+DR L L L
Sbjct: 1252 GQVVVLDEVQLYPPGYIDLILCLLHVPVHLFLIGDPVQSDYDNEKDRAVLSCLAECCTAL 1311
Query: 2988 LGDESYRYATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLD---ELSVCLAEIIL 2818
L DE+Y+Y S RF FIGRLPC +ES+ + E L +D +L E+IL
Sbjct: 1312 LRDETYKYNMRSKRFCNRNFIGRLPCTILESDCTTEEPHVLRAHIDNLADLEPAYTEVIL 1371
Query: 2817 VSSFAEKTAIRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKH 2638
VSSF EK ++Y A++LTFGESTGLT D+ ++I+ + + +E RW+TALSR R +
Sbjct: 1372 VSSFDEKVVAQSYQSK-ARVLTFGESTGLTFDYGTILITSVAERVNEKRWVTALSRFRMN 1430
Query: 2637 VSLFSTLEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMV 2458
+ + ++A ++GR L FL + DL+ L+PG+P+F E + G D V
Sbjct: 1431 LCFVNCTSMSYEQLAVRYKGRFLCKFLCRGARTEDLQQLLPGKPQFTEEYSKAIGKDEGV 1490
Query: 2457 AELKLVGDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLA 2278
E K+ GDPWLK+ + L Q DM E + +M P+E FRTHL R E+E R ++ +LA
Sbjct: 1491 REAKVAGDPWLKTMVNLLQAPDMQEEEIAEMALPEEWFRTHLPREELEGVRSRWVHKILA 1550
Query: 2277 KEHREKRMGRIVSDQFSEDHSKNNGYR-LTNAAERFEAIYPRHRGSDTVTFIMAARKRLR 2101
KE RE R+G IVS+QF++DHSK G R LTNAAERFE IYPRHR +DTVTFIMA RKRL
Sbjct: 1551 KEAREVRLGDIVSEQFTDDHSKQIGGRQLTNAAERFETIYPRHRANDTVTFIMAVRKRLS 1610
Query: 2100 FSKPAIEMAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIE 1921
FS PA E AKL A VYG +L+ F K VPL+P + + M ++ FE+KKLSKSAA IE
Sbjct: 1611 FSNPARERAKLHDACVYGRALLDVFRKHVPLRPEHNHKFMEAALWNFEEKKLSKSAATIE 1670
Query: 1920 NHAGRSNSDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEK 1741
NH+GRS DWP+D +F KSQ CTKF NR ++AKAAQSIVCFQH VLCRFAP+MRYIE
Sbjct: 1671 NHSGRSCRDWPIDMAQIFSKSQLCTKFDNRFRLAKAAQSIVCFQHAVLCRFAPFMRYIEM 1730
Query: 1740 KLHQVLPQNFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRY 1561
K+H+VLP FYIHSGKGLDELN+WVK GKF G+CTESDYEAFDASQD FIMAFE+ELM++
Sbjct: 1731 KVHEVLPARFYIHSGKGLDELNSWVKGGKFDGVCTESDYEAFDASQDEFIMAFELELMKF 1790
Query: 1560 LRLPIDLINDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFI 1381
LRLP D+I DY FIKT LGSKLGNFAIMRFSGEASTFLFNT+ANMLFTF++Y++ G E+I
Sbjct: 1791 LRLPHDMIEDYKFIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFMKYEIKGDEYI 1850
Query: 1380 CFAGDDMCAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYER 1201
CFAGDDMCA++ L+ Y+ FL LKLKAKV T KPTFCGW+LCPDGIYKKPQL++ER
Sbjct: 1851 CFAGDDMCASRELKVVGKYKKFLDKLKLKAKVQMTQKPTFCGWHLCPDGIYKKPQLVFER 1910
Query: 1200 MCIAMETNNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSS 1021
MCIA+E NNLA+C+DNYA+EV++AY+LGERA+ RMDE+E + YNCVRLIV+ ++LLKS
Sbjct: 1911 MCIALELNNLANCIDNYAIEVAFAYRLGERAVNRMDEEEVGAFYNCVRLIVRNKHLLKSD 1970
Query: 1020 VADLFKDSLV 991
V +F++S V
Sbjct: 1971 VRAVFEESPV 1980
>emb|CDK36471.1| polyprotein [Hop latent virus]
Length = 1981
Score = 1000 bits (2586), Expect = 0.0
Identities = 566/1210 (46%), Positives = 737/1210 (60%), Gaps = 43/1210 (3%)
Frame = -3
Query: 4491 GPEVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDS 4312
GP F MP GFQ THKHSV GCS R S TFR L P +
Sbjct: 798 GPLQFEMPAGFQVTHKHSVWGCSKQRESVTFRCL---------------------PKPRA 836
Query: 4311 AFSFTPSVEAMDGAPANVVEGQDAAIT----TACTVGEKLGC-NVDYCAEPCPE-NFVRI 4150
P+ A + + VE Q + A V KLG +V C ++ +
Sbjct: 837 IAQSVPASAAPESLYEHAVEAQQVLVEKPERNADVVAYKLGSVDVSVCEALWETVSYAAL 896
Query: 4149 DVPGDGYCFYHAVGYYINLGGRELKRE------------------------AFRTCTAEE 4042
DVPGDG CF+H+VG + L ELKR A TC A
Sbjct: 897 DVPGDGSCFWHSVGLLLGLNSLELKRRCVGYRFHAEGLDAELDKAAQDGAYADDTCVAAT 956
Query: 4041 LAQPLVAEQMHGANPAE------GEAICLVARKLKMRXYNVAIPRNGCVLTAICEALNRT 3880
+A V ++ E + ++ +L+ Y + RN CV+ AI + LNR
Sbjct: 957 VAVINVQIRIWNKEVDELFTFSTADVDKVIDLQLEGEHYMPMLIRNNCVVRAIADGLNRL 1016
Query: 3879 RADVLKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIE 3700
+V VL R+ +L L +GRGL +E + FG+ ++D G
Sbjct: 1017 ECEVQHVLERKCAPVLLEDLRKGRGLEPMNLELVFSCFGVCALVDVGGRTVVYNEAGGTH 1076
Query: 3699 RCFTFYDDHLAFVKRHNGFCFSS-RNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAE 3523
FT +D+HL++ R + H G S + L G+ I +++ A
Sbjct: 1077 MQFTLHDEHLSYNPRKKKPSLDLVAGAKH--GKLFAASVIESLQAMGTMIARKPDITSAG 1134
Query: 3522 KLIESLHSGLTGIMSSELFNSRSKLVP--LTETVRLGRAVTTILGTFGSGKSTLYQKFFQ 3349
L +S TG++ S LFN +S L + + + TILGTFGSGKS +++K
Sbjct: 1135 LLADSFFEASTGVLRSSLFNDQSNLRKAFIKNAGEESKPICTILGTFGSGKSYIFKKLLS 1194
Query: 3348 KSLGKHIHFVSPRKVLAGAFRDDLKALRDQDGAEISKEARKGWVVCTFETFVLNHKKVGS 3169
G+ +VSPR+ LA F+ + ++ + + +E W V TFETF+ +
Sbjct: 1195 GGAGRAFDYVSPRRALADEFKRSVGLVKKKGCQRVGQE---NWKVSTFETFLDKASHLLE 1251
Query: 3168 THVVILDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKL 2989
VV+LDEVQL+PPGY+DLI LL V ++L GDP QS+YDNE+DR L L L
Sbjct: 1252 GQVVVLDEVQLYPPGYIDLILCLLHVPVHLFLIGDPVQSDYDNEKDRAVLSCLAECCTAL 1311
Query: 2988 LGDESYRYATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLD---ELSVCLAEIIL 2818
L DE+Y+Y S RF FIGRLPC +ES+ + E L +D +L E+IL
Sbjct: 1312 LRDETYKYNMRSKRFCNRNFIGRLPCTILESDCTTEEPHVLRAHIDNLADLEPAYTEVIL 1371
Query: 2817 VSSFAEKTAIRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKH 2638
VSSF EK ++Y A++LTFGESTGLT D+ ++I+ + + +E RW+TALSR+R +
Sbjct: 1372 VSSFDEKIVAQSYQSK-ARVLTFGESTGLTFDYGTILITSVAERVNEKRWVTALSRSRMN 1430
Query: 2637 VSLFSTLEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMV 2458
+ + ++A ++GR L FL + DL+ L+PG+P+F E + G D V
Sbjct: 1431 LCFVNCTSMGYEQLAVRYKGRFLCKFLCRGARTEDLQQLLPGQPQFTAEYSKTIGKDEGV 1490
Query: 2457 AELKLVGDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLA 2278
E K+ GDPWLK+ + L Q DM E + +M P+E FRTHL R E+E R ++ +LA
Sbjct: 1491 REAKVAGDPWLKTMVNLLQAPDMQEEEIAEMALPEEWFRTHLPREELEGVRSRWVHKILA 1550
Query: 2277 KEHREKRMGRIVSDQFSEDHSKNNGYR-LTNAAERFEAIYPRHRGSDTVTFIMAARKRLR 2101
KE RE R+G IVS+QF++DHSK G R LTNAAERFE IYPRHR +DTVTFIMA RKRL
Sbjct: 1551 KEAREVRLGDIVSEQFTDDHSKQIGGRQLTNAAERFETIYPRHRANDTVTFIMAVRKRLS 1610
Query: 2100 FSKPAIEMAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIE 1921
FS PA E AKL A VYG +L+ F K VPL+P + + M ++ FE+KKLSKSAA IE
Sbjct: 1611 FSNPARERAKLHDACVYGRALLDVFRKHVPLRPEHNHKFMEAALWNFEEKKLSKSAATIE 1670
Query: 1920 NHAGRSNSDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEK 1741
NH+GRS DWP+D +F KSQ CTKF NR ++AKAAQSIVCFQH VLCRFAP+MRYIE
Sbjct: 1671 NHSGRSCRDWPIDMAQIFSKSQLCTKFDNRFRLAKAAQSIVCFQHAVLCRFAPFMRYIEM 1730
Query: 1740 KLHQVLPQNFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRY 1561
K+H+VLP FYIHSGKGLDELN+WVK GKF G+CTESDYEAFDASQD FIMAFE+ELM++
Sbjct: 1731 KVHEVLPARFYIHSGKGLDELNSWVKGGKFDGVCTESDYEAFDASQDEFIMAFELELMKF 1790
Query: 1560 LRLPIDLINDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFI 1381
LRLP D+I DY FIKT LGSKLGNFAIMRFSGEASTFLFNT+ANMLFTF++Y++ G E+I
Sbjct: 1791 LRLPHDMIEDYKFIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFMKYEIKGDEYI 1850
Query: 1380 CFAGDDMCAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYER 1201
CFAGDDMCA++ L+ Y+ FL LKLKAKV T KPTFCGW+LCPDGIYKKPQL++ER
Sbjct: 1851 CFAGDDMCASRELKVVGKYKKFLDKLKLKAKVQMTQKPTFCGWHLCPDGIYKKPQLVFER 1910
Query: 1200 MCIAMETNNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSS 1021
MCIA+E NNLA+C+DNYA+EV++AY+LGERA+ RMDE+E + YNCVRLIV+ ++LLKS
Sbjct: 1911 MCIALELNNLANCIDNYAIEVAFAYRLGERAVNRMDEEEVGAFYNCVRLIVRNKHLLKSD 1970
Query: 1020 VADLFKDSLV 991
V +F++S V
Sbjct: 1971 VRAVFEESPV 1980
>gb|AJR19303.1| viral replicase [Hop latent virus]
Length = 1981
Score = 999 bits (2582), Expect = 0.0
Identities = 566/1206 (46%), Positives = 746/1206 (61%), Gaps = 39/1206 (3%)
Frame = -3
Query: 4491 GPEVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDS 4312
GP+ F MP GFQ THKHSV GCS R S TFR L + R++ + PA + E P +
Sbjct: 798 GPQQFEMPAGFQVTHKHSVWGCSKQRESVTFRCLRKS---RATARSVPASAAPE-PLYEH 853
Query: 4311 AFSFTPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPENFVRIDVPGDG 4132
A + A+VV + ++ + V E L V Y A +DVPGDG
Sbjct: 854 AVEAQQVLAEKPERNADVVAYKLGSVDVS--VCEALWETVSYAA---------LDVPGDG 902
Query: 4131 YCFYHAVGYYINLGGRELKRE------------------------AFRTCTAEELAQPLV 4024
CF+H+VG + L ELKR A TC A +A V
Sbjct: 903 SCFWHSVGLLLGLNSLELKRRCVGYRFHAEGLDAELDKAAQDGAYADDTCVAATVAVINV 962
Query: 4023 --------AEQMHGANPAEGEAICLVARKLKMRXYNVAIPRNGCVLTAICEALNRTRADV 3868
+++ + A+ + + + +L+ Y + RN CV+ AI + LNR +V
Sbjct: 963 QIRIWNKDVDKLFTFSTADVDKV--IDLQLEGEHYMPMLIRNNCVVRAIADGLNRLECEV 1020
Query: 3867 LKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFT 3688
VL R+ +L L +GRGL +E + FG+ ++D G FT
Sbjct: 1021 QHVLERKCAPVLLEDLRKGRGLEPMNLELVFSCFGVCALVDVGGRTVVYNEAGGTHMQFT 1080
Query: 3687 FYDDHLAFVKRHNGFCFSS-RNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAEKLIE 3511
+++HL++ R + H G S + L G+ I +++ A L +
Sbjct: 1081 LHNEHLSYNPRKKKPSLDLVAGAKH--GKLFAASVIESLQAMGTMIARKPDITSAGLLAD 1138
Query: 3510 SLHSGLTGIMSSELFNSRSKLVP--LTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLG 3337
S TG++ S LFN +S L + + + TILGTFGSGKS +++K G
Sbjct: 1139 SFFEASTGVLRSSLFNDQSNLRKAFIKNAGEESKPICTILGTFGSGKSYIFKKLLSGGAG 1198
Query: 3336 KHIHFVSPRKVLAGAFRDDLKALRDQDGAEISKEARKGWVVCTFETFVLNHKKVGSTHVV 3157
+ +VSPR+ LA F+ + ++ + ++ +E W V TFETF+ + VV
Sbjct: 1199 RAFDYVSPRRALADEFKRSVGLVKKKGSQKVGQE---NWKVSTFETFLDRASHLLEGQVV 1255
Query: 3156 ILDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDE 2977
+LDEVQL+PPGY+DLI LL V ++L GDP QS+YDNE+DR L L LL DE
Sbjct: 1256 VLDEVQLYPPGYIDLILCLLHVPVHLFLIGDPVQSDYDNEKDRAVLSCLAECCTALLRDE 1315
Query: 2976 SYRYATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLD---ELSVCLAEIILVSSF 2806
+Y+Y S RF FIGRLPC +ES+ + E L +D +L E+ILVSSF
Sbjct: 1316 TYKYNMRSKRFCNRNFIGRLPCTILESDCTTEEPHVLRAHIDNLADLEPAYTEVILVSSF 1375
Query: 2805 AEKTAIRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLF 2626
EK ++Y A++LTFGESTGLT D+ ++I+ + + +E RW+TALSR R ++
Sbjct: 1376 DEKIVAQSYQSK-ARVLTFGESTGLTFDYGTILITSVAERVNEKRWVTALSRFRMNLCFV 1434
Query: 2625 STLEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELK 2446
+ ++A ++GR L FL + DL+ L+PG+P+F E + G D V E K
Sbjct: 1435 NCTSMSYEQLAVRYKGRFLCKFLCRGARTEDLQQLLPGKPQFTAEYSKAIGKDEGVREAK 1494
Query: 2445 LVGDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHR 2266
+ GDPWLK+ + L Q DM E + +M P+E FRTHL R E+E R ++ +LAKE R
Sbjct: 1495 VAGDPWLKTMVNLLQAPDMQEEEITEMALPEEWFRTHLPREELEGVRSRWVHKILAKEAR 1554
Query: 2265 EKRMGRIVSDQFSEDHSKNNGYR-LTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKP 2089
E R+G IVS+QF++DHSK G R LTNAAERFE IYPRHR +DTVTFIMA RKRL FS P
Sbjct: 1555 EVRLGDIVSEQFTDDHSKQIGGRQLTNAAERFETIYPRHRANDTVTFIMAVRKRLSFSNP 1614
Query: 2088 AIEMAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAG 1909
A E AKL A YG +L+ F K VPL+P + + M ++ FE+KKLSKSAA IENH+G
Sbjct: 1615 ARERAKLHDACAYGRALLDVFRKHVPLRPEHNHKFMEAALWNFEEKKLSKSAATIENHSG 1674
Query: 1908 RSNSDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQ 1729
RS DWP+D +F KSQ CTKF NR ++AKAAQSIVCFQH VLCRFAP+MRYIE K+H+
Sbjct: 1675 RSCRDWPIDMAQIFSKSQLCTKFDNRFRLAKAAQSIVCFQHAVLCRFAPFMRYIEMKVHE 1734
Query: 1728 VLPQNFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLP 1549
VLP FYIHSGKGLDELN+WVK GKF G+CTESDYEAFDASQD FIMAFE+ELM++LRLP
Sbjct: 1735 VLPARFYIHSGKGLDELNSWVKGGKFDGVCTESDYEAFDASQDEFIMAFELELMKFLRLP 1794
Query: 1548 IDLINDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAG 1369
D+I DY FIKT LGSKLGNFAIMRFSGEASTFLFNT+ANMLFTF++Y++ G E+ICFAG
Sbjct: 1795 HDMIEDYKFIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFMKYEIKGDEYICFAG 1854
Query: 1368 DDMCAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIA 1189
DDMCA++ L+ Y+ FL LKLKAKV T KPTFCGW+LCPDGIYKKPQL++ERMCIA
Sbjct: 1855 DDMCASRELKVVGKYKKFLDKLKLKAKVQMTQKPTFCGWHLCPDGIYKKPQLVFERMCIA 1914
Query: 1188 METNNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADL 1009
+E NNLA+C+DNYA+EV++AY+LGERA+ RMDE+E + YNCVRLIV+ ++LLKS V +
Sbjct: 1915 LELNNLANCIDNYAIEVAFAYRLGERAVNRMDEEEVGAFYNCVRLIVRNKHLLKSDVRAV 1974
Query: 1008 FKDSLV 991
F++S V
Sbjct: 1975 FEESPV 1980
>gb|AIZ76625.1| replicase polyprotein [Elderberry carlavirus C]
Length = 2005
Score = 998 bits (2580), Expect = 0.0
Identities = 567/1221 (46%), Positives = 750/1221 (61%), Gaps = 58/1221 (4%)
Frame = -3
Query: 4494 EGPEVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSD 4315
EG F MP GFQ +HKH+V CSAGR+SFTFR+LA+ AR ISD+
Sbjct: 786 EGGVSFTMPAGFQESHKHAVADCSAGRISFTFRRLASG--ARGPVNEGTTISDITEAPQR 843
Query: 4314 SAFSFTPSVEAMDGAPA-----------------NVVEGQDAAITTACTVGEKLGCNVDY 4186
S + E ++ PA +V +A + T E L + +
Sbjct: 844 LDCSLEKAEELLEALPACAPLEVATQPHLSSKSAELVAQVEADMATPPKTLEYLHGSSNV 903
Query: 4185 CAEPC---PENFVRIDVPGDGYCFYH----AVGYYINLGGRELKREAFRTCTAEELAQPL 4027
P P F+R V GDG CF++ AVG I+ +EL R + T E L +
Sbjct: 904 TITPYRIDPGKFIRTSVLGDGNCFWYSLETAVGVSISRQ-KELTR-TYATGPPEFLKR-- 959
Query: 4026 VAEQMHGANPAEGEAICLVARKLKMRX------------------------------YNV 3937
+ Q+ AE EAI A LK+ +
Sbjct: 960 LENQLGDHVMAEEEAISCAAEALKVEINVYDAAQHCLFTYTPTSSYRSAWLYLEDEHFEP 1019
Query: 3936 AIPRNGCVLTAICEALNRTRADVLKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIR 3757
A P N C++ AI EA++R +DV+ V+ + +++L +G G+ + + FGI+
Sbjct: 1020 ARPANDCLIVAISEAVSRPSSDVMHVMEKNLGPDYITELWDGDGVDVSFLPTIFELFGIQ 1079
Query: 3756 CIIDXXXXXXXXXXXGSIERCFTFYDDHLAFVKRHNGFCFSSRNSTHAPGAAVGRSALAL 3577
++ + CF + H+ F+++ + N T A AV ++ L
Sbjct: 1080 ALLLTDEGEIRCGAADGVGACFQLRNSHITFLRKEKVVAHKALN-TKANLTAVTEESVEL 1138
Query: 3576 LDCAGSKINAVFELSRAEKLIESLHSGLTGIMSSELFNSRSKLVPLTE-TVRLGRAVTTI 3400
L G+ I + RA +L ++LH G TG +SS L+N +S L L + + RA+ I
Sbjct: 1139 LRGCGTLITYQPDQGRALRLAKNLHGGQTGAISSGLYNDKSDLSELVVGSSQAARALNVI 1198
Query: 3399 LGTFGSGKSTLYQKFFQKSLGKHIHFVSPRKVLAGAFRDDLKALRDQDGAEISKEARKGW 3220
LGTFG+GKSTL++KF + G+ I +VSPR+ LA F D++ R + G SK + W
Sbjct: 1199 LGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNW 1258
Query: 3219 VVCTFETFVLNHKKVGSTHVVILDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDN 3040
VCTFE F+ K+ + VI+DEVQL+PPGYLDL+ +LL + V I+L GDPCQS+YD+
Sbjct: 1259 QVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDS 1318
Query: 3039 ERDRVFLEPLGNNLDKLLGDESYRYATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHN 2860
E+DR +++ K+L ++ Y Y LS RF + RLPC ES+ + + L +
Sbjct: 1319 EKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPCTLDESKLAIDEQYLLLD 1378
Query: 2859 GLDELSVCLAE---IILVSSFAEKTAIRAYVGAGAKILTFGESTGLTVDHSAVIISQSSR 2689
L+E+ E + LVSSF EK + +Y G LTFGESTG + ++I+ SR
Sbjct: 1379 RLEEVEALGGEYRKVALVSSFEEKKIVDSYFGPETLCLTFGESTGRNFKYGCILITDVSR 1438
Query: 2688 QASEARWLTALSRARKHVSLFSTLEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGR 2509
+SE RW+TAL+R ++ L + + ++ R L +FL TST +K L+PG
Sbjct: 1439 HSSERRWITALTRFSHNLCLVNATCTQFEMLNLQYKNRALNYFLTGTSTPDFIKTLLPGT 1498
Query: 2508 PRFAGELMPSAGADFMVAELKLVGDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLL 2329
P+ G D V E K+VGDPWLK+ + L Q D+ E V + + E FRTHL
Sbjct: 1499 PKSRLGFGEKIGRDEGVKEAKMVGDPWLKTMIDLLQLEDVEEAEVDEEEMQNEQFRTHLP 1558
Query: 2328 RSEMETSRVAFIDDMLAKEHREKRMGRIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHR 2149
R EME+ R ++ +LAKEHREKR+G +VS+QF+++HS+N+G LTNA ERFE IYPRHR
Sbjct: 1559 RCEMESVRARWVHKILAKEHREKRVGNLVSEQFTDEHSRNDGEHLTNACERFETIYPRHR 1618
Query: 2148 GSDTVTFIMAARKRLRFSKPAIEMAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESV 1969
+DTVTF+MA +KRL+FS P E AKL A YGPF+L+EFLK VPLKP DR+LMA +
Sbjct: 1619 ANDTVTFLMAVKKRLKFSTPCKEKAKLHEATPYGPFLLKEFLKRVPLKPQHDRELMARAK 1678
Query: 1968 AEFEKKKLSKSAAIIENHAGRSNSDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQ 1789
++FE+KK +KS+A IENH+GRS DW D GL+F KSQ CTKF NR + AKAAQ+IVCF
Sbjct: 1679 SDFEEKKTAKSSATIENHSGRSCRDWLADIGLIFSKSQLCTKFDNRFRSAKAAQTIVCFA 1738
Query: 1788 HFVLCRFAPYMRYIEKKLHQVLPQNFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDA 1609
H VLCRFAPYMRYIE KL + LP +Y+HSGK L+EL+AWV G F G+CTESDYEAFDA
Sbjct: 1739 HSVLCRFAPYMRYIEYKLKESLPPQYYVHSGKKLEELSAWVVDGTFEGVCTESDYEAFDA 1798
Query: 1608 SQDHFIMAFEIELMRYLRLPIDLINDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMAN 1429
SQD +I+AFE+ LMRYL LP DL+NDYI+IKTHLGSKLGNFAIMRFSGEASTFLFNTMAN
Sbjct: 1799 SQDQYIVAFEVALMRYLGLPPDLVNDYIYIKTHLGSKLGNFAIMRFSGEASTFLFNTMAN 1858
Query: 1428 MLFTFLRYDLNGKEFICFAGDDMCAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWN 1249
MLFTFLRY+L G E ICFAGDDMCA RL+ + + FL LKLKAKV FT KPTFCGW+
Sbjct: 1859 MLFTFLRYELKGSERICFAGDDMCANTRLKLKHEHAGFLGKLKLKAKVQFTDKPTFCGWH 1918
Query: 1248 LCPDGIYKKPQLIYERMCIAMETNNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHY 1069
LC DGIYKKPQL+YERMCIA ETNNL +C+DNYA+EV YAY++GERA ERMDE+E ++Y
Sbjct: 1919 LCSDGIYKKPQLVYERMCIAKETNNLHNCIDNYAIEVGYAYRMGERAKERMDEEELEAYY 1978
Query: 1068 NCVRLIVKKRYLLKSSVADLF 1006
NCVR+IVK R+LL S++A LF
Sbjct: 1979 NCVRVIVKNRHLLLSNIAALF 1999
>ref|YP_009126731.1| RNA-dependent RNA polymerase [Alfalfa latent virus]
gi|760249767|gb|AJP16553.1| RNA-dependent RNA polymerase
[Alfalfa latent virus]
Length = 1908
Score = 994 bits (2571), Expect = 0.0
Identities = 559/1205 (46%), Positives = 735/1205 (60%), Gaps = 42/1205 (3%)
Frame = -3
Query: 4494 EGPEVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSD 4315
E +MPEG Q +HKH+V C GR+S+TFR+L + + EV S
Sbjct: 730 EANTYLIMPEGCQISHKHAVRDCDHGRISYTFRQL--------KQCREYMERECEVTSSI 781
Query: 4314 SAFSFTPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPENFVRIDVPGD 4135
SVE + + G+DA +K V I+VPGD
Sbjct: 782 DPSDDDQSVEIITLHEVEIKRGRDA---------DKQALEV-------------IEVPGD 819
Query: 4134 GYCFYHAVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMHGANPAEGEAICLVAR--- 3964
G CF+H++GYY L GR LK +F + + +QM G E E+I AR
Sbjct: 820 GNCFWHSLGYYFGLEGRSLKEISFSRLEEMDWDLEPLKKQMSGYEFCELESIVAAARLHS 879
Query: 3963 ----------------------------KLKMRXYNVAIPRNGCVLTAICEALNRTRADV 3868
+L Y+ IP+ CVL AI ++L ++ D+
Sbjct: 880 VEIEIIDHNSSMVWVFTPKNNLRQYARMQLVGEHYSPVIPKEVCVLRAIADSLGKSLQDI 939
Query: 3867 LKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFT 3688
+ L++ + + +L + G GL + ++E M FGIR +ID G++ER F
Sbjct: 940 HRCLTKAENRHLLELVESGEGLEVFLIEPFMVLFGIRAVIDNDGDLIVLNAKGALERFFQ 999
Query: 3687 FYDDHLAFVKRHNGFCFSSRNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAEKLIES 3508
Y DHL V + G V R++LA L AG+++ + RA+ L ES
Sbjct: 1000 NYGDHLTHVSKDK--IVGLERFGEFEGQGVERNSLAALKSAGTELIYEAKKDRADILCES 1057
Query: 3507 LHSGLTGIMSSELFNSRSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLGKHI 3328
LHSGLTG++SS+L+N + L+ + R++T ILGTFG+GKSTL+ KF + + GK +
Sbjct: 1058 LHSGLTGVISSKLYNDQP-LIQNPGPNSICRSLTVILGTFGAGKSTLFIKFLKANEGKRV 1116
Query: 3327 HFVSPRKVLAGAFRDDLKALRDQDGAEISKEAR---KGWVVCTFETFVLNHKKVGSTHVV 3157
HFVSPRKVLA R ++ + + K + K W V TFE F+L + + + V
Sbjct: 1117 HFVSPRKVLAEEIRSNMARALGYESGRMGKSGKLKSKNWFVHTFEVFLLKIRSLKAEDCV 1176
Query: 3156 ILDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDE 2977
++DEVQLFPPGYLD + Y L + + GDP QS+YDNE+DR L LG+++++ L
Sbjct: 1177 VMDEVQLFPPGYLDCMTYQLNGKCELIALGDPAQSDYDNEKDRNILCCLGSDIERALVGN 1236
Query: 2976 SYRYATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLDELSVCLAE---IILVSSF 2806
Y Y S+RF F+ RLPC F+ + + G+ E E ++LV+ F
Sbjct: 1237 EYDYTIGSYRFQNRNFLNRLPCSFMHQSLEIDEPYLIFEGVGEFLKVFTEYRSVVLVAGF 1296
Query: 2805 AEKTAIRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLF 2626
EK +RAY G ++LTFGESTGLT D +IIS S + +E RW+TALSR R++++L
Sbjct: 1297 TEKKLVRAYYGQECRVLTFGESTGLTFDRGLIIISADSLKVNEKRWVTALSRFRQNLALL 1356
Query: 2625 S----TLEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMV 2458
+ TLE R A +LA+FL +S + +LK ++PG P+F + G D +
Sbjct: 1357 NLTGDTLENLVLRKAN----SMLANFLKGSSKVENLKEILPGVPKFKQTFIGKVGKDQGL 1412
Query: 2457 AELKLVGDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLA 2278
E KL GDPWLK +FLGQ D + + + + F+THL R EME R ++ +L
Sbjct: 1413 VEEKLQGDPWLKGELFLGQTEDAEVIQINEFMEQDQWFKTHLPRCEMEGVRSRWLHLLLE 1472
Query: 2277 KEHREKRMGRIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRF 2098
KE RE R +V++QF++DH + G +LTNAAERFEAIYPRHR SD +TF+MA +KRLRF
Sbjct: 1473 KEAREYRFRDMVTEQFTDDHDRGCGEKLTNAAERFEAIYPRHRASDNLTFLMAVKKRLRF 1532
Query: 2097 SKPAIEMAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIEN 1918
SKP IE AKL A YG F+L+EFL+ +PL+ LMAE+V +FE+KK SKSAA IEN
Sbjct: 1533 SKPHIEEAKLNEALPYGKFLLDEFLQKIPLRATHRPDLMAEAVQDFEEKKRSKSAATIEN 1592
Query: 1917 HAGRSNSDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKK 1738
H+GRS DW D GLVF KSQ CTKF NR + AKAAQSIVCFQH VLCRFAPYMRYIEK
Sbjct: 1593 HSGRSCRDWLADVGLVFSKSQICTKFDNRFRCAKAAQSIVCFQHSVLCRFAPYMRYIEKL 1652
Query: 1737 LHQVLPQ-NFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRY 1561
L + L + N+YIHSGK L++L+ WV G FSGICTESDYEAFDASQDH+IMAFE+ LM +
Sbjct: 1653 LGEALKKTNYYIHSGKRLEDLDDWVVKGNFSGICTESDYEAFDASQDHWIMAFELTLMEH 1712
Query: 1560 LRLPIDLINDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFI 1381
L LP DLI DY +IKTHLGSKLG FAIMRFSGEASTFLFNTMAN LFTFLRYD G EFI
Sbjct: 1713 LGLPKDLIADYRYIKTHLGSKLGAFAIMRFSGEASTFLFNTMANALFTFLRYDTRGDEFI 1772
Query: 1380 CFAGDDMCAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYER 1201
CFAGDDMCA+K L+ + +EDFLS LKLKAKV FT PTFCGW+L P GI+KKPQL+YER
Sbjct: 1773 CFAGDDMCASKHLKVSNKFEDFLSKLKLKAKVQFTKNPTFCGWSLLPFGIFKKPQLVYER 1832
Query: 1200 MCIAMETNNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSS 1021
+CIA E NL +C+DNYA+E+SYAYK GE A+ M+E+E + YNCVR+I+K+ +LLKS
Sbjct: 1833 ICIAREKKNLHNCIDNYAIELSYAYKRGELAVNAMNEEETDAFYNCVRVIIKRSHLLKSD 1892
Query: 1020 VADLF 1006
V D+F
Sbjct: 1893 VKDIF 1897
>ref|YP_009158846.1| replicase [Pea streak virus] gi|846453631|gb|AKN20456.1| replicase
[Pea streak virus]
Length = 1908
Score = 988 bits (2553), Expect = 0.0
Identities = 558/1196 (46%), Positives = 735/1196 (61%), Gaps = 39/1196 (3%)
Frame = -3
Query: 4476 VMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDSAFSFT 4297
+MPEG Q HKH+V C+ GR+S+TFR+L + + EV
Sbjct: 736 IMPEGCQNGHKHAVSNCTHGRISYTFRQL--------KQCREYLERECEVESLCDQSESE 787
Query: 4296 PSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPENFVRIDVPGDGYCFYH 4117
SVE I T V K G +VD + I+VPGDG CF+H
Sbjct: 788 ESVE----------------IITLHDVEIKQGKDVD------TQFLDVIEVPGDGNCFWH 825
Query: 4116 AVGYYINLGGRELKR-EAFRTCTAEELAQPLVAEQMHGANPAEGEAICLVAR-------- 3964
++GYY L G+ LK A R + +PL QM G E E+I AR
Sbjct: 826 SLGYYFGLEGKALKEISAARLEEVDWNLEPLKT-QMSGYAYCEFESIVAAARLHSVQIEI 884
Query: 3963 -----------------------KLKMRXYNVAIPRNGCVLTAICEALNRTRADVLKVLS 3853
+L Y+ IP+ CVL AI E+L +T D+ + L+
Sbjct: 885 IDLNSSIVWVFTPKTDLRQCARMQLIGEHYSPVIPKEVCVLRAIAESLGKTLQDIHRCLT 944
Query: 3852 REDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTFYDDH 3673
+ + + +L + G GL + ++E M FGIR +ID G++ER F Y +H
Sbjct: 945 KAENRNLLDLVESGEGLEVFLIEPFMMLFGIRAVIDNEGDVIILNPKGALERFFQNYGNH 1004
Query: 3672 LAFVKRHNGFCFSSRNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAEKLIESLHSGL 3493
L V ++ G V R++LA L AG+++ + RA+ L ESLHSGL
Sbjct: 1005 LVHVDKNK--IIGLERFGEVEGLGVERNSLAALKAAGTELLYEAKKDRADILCESLHSGL 1062
Query: 3492 TGIMSSELFNSRSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLGKHIHFVSP 3313
TG++SS+L+N + L+ + R VT +LGTFG+GKSTL+ KF + + GK +HFVSP
Sbjct: 1063 TGVISSKLYNDQP-LIQNPGPGSVSRNVTVVLGTFGAGKSTLFIKFLKANEGKRVHFVSP 1121
Query: 3312 RKVLAGAFRDDL-KALRDQDG--AEISKEARKGWVVCTFETFVLNHKKVGSTHVVILDEV 3142
RKVLA R ++ KAL + G + K K W V TFE F+L + + + V++DE+
Sbjct: 1122 RKVLAEEIRANMAKALGYESGRMGKSGKLKSKNWFVHTFEVFLLKIQSLKAEDCVVMDEI 1181
Query: 3141 QLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYRYA 2962
QLFPPGYLD + Y L + + GDP QS+YDNE+DR L LG++L++ L Y Y
Sbjct: 1182 QLFPPGYLDCVTYQLNGKCELVALGDPAQSDYDNEKDRNILCYLGSDLERALQGVDYDYT 1241
Query: 2961 TLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLDELSVCLAE---IILVSSFAEKTA 2791
S+RF F+ RLPC F++ + ++ G+ E +E ++LV+ F EK
Sbjct: 1242 IGSYRFQNRNFLRRLPCAFMQQSLEIDEPYLIYEGVSEFLKIASEYRAVVLVAGFTEKKL 1301
Query: 2790 IRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTLEG 2611
+RAY G K+LTFGESTGLT D +I+S S + +E RW+TALSR R+++++ +
Sbjct: 1302 VRAYYGQDCKVLTFGESTGLTFDRGLIILSADSLKVNEKRWVTALSRFRQNLAILNLTGD 1361
Query: 2610 HESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVGDP 2431
+ VLA FL +S+ LK ++PG P+F + G D + E KL GDP
Sbjct: 1362 TLENLVLRKSNSVLADFLKGSSSTDKLKEILPGNPKFKQTFIGKIGKDQGLVEEKLGGDP 1421
Query: 2430 WLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKRMG 2251
WLK +FLGQ D+ ++ + + + F+THL R EME R ++ +L K+ RE R
Sbjct: 1422 WLKGELFLGQTEDVEVALINEFMEQDQWFKTHLPRCEMEGVRSRWLHLLLEKDAREYRFR 1481
Query: 2250 RIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEMAK 2071
+V++QF++DH + G RLTNAAERFEAIYPRHR SD +TF+MA +KRLRFSKP IE AK
Sbjct: 1482 DMVTEQFTDDHDRGCGERLTNAAERFEAIYPRHRASDNLTFLMAVKKRLRFSKPHIEEAK 1541
Query: 2070 LASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNSDW 1891
L A +G F+L+EFLK +PL+ LMAE+V +FE+KK SKSAA IENHAGRS DW
Sbjct: 1542 LNEALPFGKFLLDEFLKKIPLRASHRPDLMAEAVQDFEEKKRSKSAATIENHAGRSCRDW 1601
Query: 1890 PVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQ-VLPQN 1714
D GLVF KSQ CTKF NR + AKAAQSIVCFQH VLCRFAPYMRYIEK L + +L N
Sbjct: 1602 LADVGLVFSKSQICTKFDNRFRCAKAAQSIVCFQHSVLCRFAPYMRYIEKLLGEALLKTN 1661
Query: 1713 FYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLIN 1534
+YIHSGK L+EL+ WV G F+G+CTESDYEAFDASQDH+IMAFE+ LM +L LP DLI
Sbjct: 1662 YYIHSGKRLEELDDWVIRGNFTGVCTESDYEAFDASQDHWIMAFELTLMEHLGLPRDLIA 1721
Query: 1533 DYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMCA 1354
DY +IKTHLGSKLG+FAIMRFSGEASTFLFNTMAN LFTFLRYD G EFICFAGDDMCA
Sbjct: 1722 DYRYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANALFTFLRYDTRGDEFICFAGDDMCA 1781
Query: 1353 AKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETNN 1174
+K L+ +EDFLS LKLKAKV FT PTFCGW+L P GI+KKPQL+YER+CIA E N
Sbjct: 1782 SKHLKVSDKFEDFLSKLKLKAKVQFTKNPTFCGWSLLPFGIFKKPQLVYERICIAREKKN 1841
Query: 1173 LASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLF 1006
L +C+DNYA+E+SYAY+ GE A+ M+E+E + YNCVR+I+K+ +LL+S V +F
Sbjct: 1842 LHNCIDNYAIELSYAYRRGELAVNAMNEEETDAFYNCVRVIIKRSHLLRSDVKTVF 1897
>ref|YP_001165301.1| replicase [Phlox virus S] gi|145206988|gb|ABP37862.1| replicase
[Phlox virus S]
Length = 1990
Score = 987 bits (2552), Expect = 0.0
Identities = 555/1201 (46%), Positives = 736/1201 (61%), Gaps = 36/1201 (2%)
Frame = -3
Query: 4491 GPEVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDS 4312
GP +MPEGFQ +HKH+V C+A R S TFR+LAA P + E PG+
Sbjct: 807 GPMSILMPEGFQLSHKHAVCNCTAARESVTFRRLAAV---------KPKAEEPEKPGASF 857
Query: 4311 AFSFTPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPENFVRIDVPGDG 4132
+ S ++ G + VE + T T+ +G + + P P ++ DVPGDG
Sbjct: 858 DEAEVKSNDSHTGEHEDDVE-----VETEVTIKTAVG-TIKHSKIP-PMSYSLQDVPGDG 910
Query: 4131 YCFYHAVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMHGANPAEGEAICLVARKLKM 3952
CF+H + L +ELK R E ++ Q+ AE EAI A L+
Sbjct: 911 NCFWHCLSKSSGLAFKELKEACRRIKYGEAERDEALSSQLKPRIFAEEEAILAAAVVLRA 970
Query: 3951 RX-------------------------------YNVAIPRNGCVLTAICEALNRTRADVL 3865
+ + + +N CV+ A+ ALNR +VL
Sbjct: 971 KIIVLSPEWPQQSEFTPIGSLEQVHYIEMANNHFQLVELKNACVVRAVASALNRRCCEVL 1030
Query: 3864 KVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTF 3685
KVL S L G+G+ + +E A FGI ++ G++ F
Sbjct: 1031 KVLDDAGDLGEDSPLLSGQGVELAELEHYFALFGIAALVVTHTTSHQLNVQGAVPATFRL 1090
Query: 3684 YDDHLAFVKRHNGFCFSSRNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAEKLIESL 3505
+D H+ VK++ + RS L + C GS + + +RA+ L + L
Sbjct: 1091 HDGHIDHVKKNCQVDNGLLKGENIGLTITSRSKLYVEQC-GSLLPYAPDEARAKVLADCL 1149
Query: 3504 HSGLTGIMSSELFNSRSKLVPLTE-TVRLGRAVTTILGTFGSGKSTLYQKFFQKSLGKHI 3328
+G TG+++S LFN+ S L+ + V V I GTFG GKST+++KFF + GK +
Sbjct: 1150 LAGNTGVLNSSLFNNCSNLMGSVDLNVEHENEVACIFGTFGCGKSTVFKKFFNLNPGKGV 1209
Query: 3327 HFVSPRKVLAGAFRDDLKALRDQDGAEISKEARKGWVVCTFETFVLNHKKVGSTHVVILD 3148
++SPR+ LA F+ + A + K +K W +CTFE F+ V VILD
Sbjct: 1210 FYISPRRALADEFKGKVMAKKV---GRFDKLRQKNWSICTFEIFLKKRHLVKPGMAVILD 1266
Query: 3147 EVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYR 2968
E+QL+PPGYLDL+ L P+ V + GDPCQS+YDNE DR +L + ++ D+LLG +Y+
Sbjct: 1267 ELQLYPPGYLDLVMLLCPKGVYFIVGGDPCQSDYDNEMDRPWLGSMISDCDRLLGKATYK 1326
Query: 2967 YATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLDELSVC---LAEIILVSSFAEK 2797
Y LS RF F+ RL CRF++ + +++ L++GL+E+ + E LVSSF EK
Sbjct: 1327 YNMLSQRFKNENFLSRLHCRFIKEQMNEKAEHLLYSGLNEMVMIDKEFQEAFLVSSFDEK 1386
Query: 2796 TAIRAYVGAGA-KILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLFST 2620
+ A+ +ILTFGESTGL VII+ S SE RW+TALSR ++ +
Sbjct: 1387 KIVSAHFDIPEHRILTFGESTGLNFKMGTVIITNVSSLTSEKRWVTALSRFSNNICFVNL 1446
Query: 2619 LEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLV 2440
+A+ + GR L+ FL A S D+ NL+PG+P F G D + E K+
Sbjct: 1447 TGLDWQTLAKVYVGRSLSTFLCACSKPEDIVNLLPGKPIFMDGYSIVVGKDEGLREEKMQ 1506
Query: 2439 GDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREK 2260
GDPWLK + L Q D+ E + +E F+THL R E+E+ R ++ ++LAKE RE
Sbjct: 1507 GDPWLKGMIDLFQIEDVEEVEEQFEELQEEWFKTHLPREELESVRAKWVHNILAKEFREV 1566
Query: 2259 RMGRIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIE 2080
RMG VS+QF++++ ++ G LTN AERFE IYPRHR +DTVTF+MA +KRLRFS PA E
Sbjct: 1567 RMGFNVSEQFTDEYPRDLGQNLTNQAERFETIYPRHRANDTVTFLMAVKKRLRFSSPAKE 1626
Query: 2079 MAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSN 1900
KL A VYG FML+EFL +PLK DRQ+M ++ EFE KK SKSAA IENH+GRS
Sbjct: 1627 KCKLLDASVYGKFMLDEFLSKIPLKKQHDRQMMEQAKKEFEDKKTSKSAATIENHSGRSC 1686
Query: 1899 SDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLP 1720
DW +D GL+F KSQ CTKF NR ++AKAAQSIVCFQH VLCRFAPYMRYIEKKLH+VLP
Sbjct: 1687 RDWLIDIGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEKKLHEVLP 1746
Query: 1719 QNFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDL 1540
+ +Y+HSGKGL+ELN+WV G F G+CTESDYEAFDASQD +++AFE+ +M YL LP DL
Sbjct: 1747 ERYYVHSGKGLEELNSWVIKGGFGGVCTESDYEAFDASQDQYMVAFEVAVMEYLGLPRDL 1806
Query: 1539 INDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDM 1360
I DY FIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFL+Y++ G EFICFAGDDM
Sbjct: 1807 IEDYKFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLKYEIKGHEFICFAGDDM 1866
Query: 1359 CAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMET 1180
CA++RL + + FLS LKLKAKV +KPTFCGWNLCPDGIYKKPQL+ ERMCIA E
Sbjct: 1867 CASERLATKHKHVGFLSKLKLKAKVFMVSKPTFCGWNLCPDGIYKKPQLVMERMCIAKEK 1926
Query: 1179 NNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLFKD 1000
NLA+C+DNYA+EVSYAYKLGE+A+ RMDE+E A+ YNCVR+IVK ++LLKS + +L++
Sbjct: 1927 ANLANCIDNYAIEVSYAYKLGEKALNRMDEEEAAAFYNCVRIIVKNKHLLKSDIRNLYEQ 1986
Query: 999 S 997
+
Sbjct: 1987 N 1987
>gb|AIZ76631.1| replicase polyprotein [Elderberry carlavirus D]
Length = 1980
Score = 980 bits (2534), Expect = 0.0
Identities = 556/1197 (46%), Positives = 732/1197 (61%), Gaps = 38/1197 (3%)
Frame = -3
Query: 4476 VMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPGSDSAFSFT 4297
+MPEGFQ +HKH + CSAGR+S TFR L G+ ++ ++V G D
Sbjct: 820 LMPEGFQQSHKHGISVCSAGRISLTFRTLKKKGLPELEE-GAQSVDSLDVMGQDE----- 873
Query: 4296 PSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPENFVRIDVPGDGYCFYH 4117
++E D + T T ++ NF R+ G G
Sbjct: 874 ------------LLEEYDISGVTKRTYNGEMS-----------RNFRRVFSSGRGDGAIE 910
Query: 4116 AVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMHGANPAEGEAI-------------- 3979
G+ + +++ E F C E + + + PA +AI
Sbjct: 911 CAGFAL-----QVEPEFFVKCFKERASGTMPEPTL----PAWEQAIFELSMWQNVKIVVN 961
Query: 3978 -----------------CLVARKLKMRXYNVAIPRNGCVLTAICEALNRTRADVLKVLSR 3850
CL K + ++ +P+NGCV++AI ++L R DV+KVLS
Sbjct: 962 NVDSMLTEVYNREKFDWCLYLCK-EENQWHYLLPKNGCVISAIAKSLERDERDVIKVLSS 1020
Query: 3849 EDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTFYDDHL 3670
+ +L++L EG GL+ +E A+ F IR II+ G ERCF D+H+
Sbjct: 1021 RGNEGLLAELCEGEGLSADNLEGALRCFNIRGIIEWDGELHTLNQAGRDERCFEIKDNHM 1080
Query: 3669 AFVKRHN--GFCFSSRNSTHAPGAAVGRSALALLDCAGSKINAVFELSRAEKLIESLHSG 3496
V++ + GF +SRN +SALA+L+ AGS IN ++RA L E L G
Sbjct: 1081 LSVEKISTLGFKVASRNGP----TIYPKSALAVLENAGSVINYEGAVNRANLLAECLLDG 1136
Query: 3495 LTGIMSSELFNSRSKLVPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLGKHIHFVS 3316
TG +SS LFN L V + + V I+GTFG+GKSTL++ F K GK + FVS
Sbjct: 1137 ATGAISSSLFNEAQDLGKYVGMVNVLQRVVFIMGTFGAGKSTLFKSFLSKCPGKCVTFVS 1196
Query: 3315 PRKVLAGAFRDDLKAL-RDQDGAEISKEARKGWVVCTFETFVLNHKKVGSTHVVILDEVQ 3139
PR+ LA + D++ L A+ + +A K V TFE F+ K+ VV++DEVQ
Sbjct: 1197 PRRSLAEEIKQDVQELWSGSKNAKEASDAAKNIHVYTFEVFLHRAPKLKKGQVVVIDEVQ 1256
Query: 3138 LFPPGYLDLIAYLLP-QQVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYRYA 2962
L+PPG+LDL+A++ +++ ++ AGDPCQS+YD+ +DR +++ + L SY+Y
Sbjct: 1257 LYPPGFLDLLAHMGDGKELKLFAAGDPCQSDYDSSKDRGRFLGFESDVLRALNGCSYKYN 1316
Query: 2961 TLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLDELSVCLAE---IILVSSFAEKTA 2791
+S RF S +GRLPCR E+ T E + + DEL +E + LVSSF EK
Sbjct: 1317 VMSRRFRNSNLLGRLPCRMSETSTGPEEEYVMCSNFDELDGLSSEFRRVFLVSSFEEKRI 1376
Query: 2790 IRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTLEG 2611
+RA LTFGE+TG ++ VII+ S+ SE RWLTALSR ++ + LE
Sbjct: 1377 VRARYPECKNCLTFGEATGRNFEYGTVIITTSAAYVSERRWLTALSRFSMNLCFLNLLEI 1436
Query: 2610 HESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVGDP 2431
++ + R L FL +++ DL L+PG F G + ELKL GDP
Sbjct: 1437 SFEQLLFVYGDRSLGRFLKGSASSKDLLALLPGNASFTNGFGAKIGKEMGEKELKLAGDP 1496
Query: 2430 WLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKRMG 2251
WLK+ +FLGQ D +EP V + F+THL R + E R ++ ML+KE REKR+
Sbjct: 1497 WLKTQIFLGQSEDSVEPEVCQPFMQEVYFKTHLPRYDAEPIRAEWLHRMLSKEIREKRVR 1556
Query: 2250 RIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEMAK 2071
+V++QF ++HSKN G RLTNAAER+EAIYPRHR SDT TF++ RKRLRFS PA+E AK
Sbjct: 1557 GLVTEQFPDEHSKNRGERLTNAAERYEAIYPRHRNSDTATFLLTVRKRLRFSSPAVECAK 1616
Query: 2070 LASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNSDW 1891
L A+ +G ML+ FLK VPLKP + + M ++ FE KK SKSAA IENH+GRS DW
Sbjct: 1617 LIEAQPFGEGMLQLFLKHVPLKPKHNPEFMCAALKAFEDKKCSKSAATIENHSGRSCRDW 1676
Query: 1890 PVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLPQNF 1711
D GL+FMKSQHCTK+ R AKA QSIVCFQH +LCRFAPYMRYIE KL +VLP+NF
Sbjct: 1677 LADVGLIFMKSQHCTKYEKRFIEAKAGQSIVCFQHSILCRFAPYMRYIELKLMEVLPKNF 1736
Query: 1710 YIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLIND 1531
Y+HSGKGL+ELN WV G F+G+CTESDYEAFDASQD +IMAFE++LM YL LP DLI D
Sbjct: 1737 YVHSGKGLEELNDWVIGGGFNGVCTESDYEAFDASQDQYIMAFELKLMEYLGLPRDLIAD 1796
Query: 1530 YIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMCAA 1351
Y +IKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTF+RYD+NG E ICFAGDDMCA+
Sbjct: 1797 YKYIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFMRYDINGSEHICFAGDDMCAS 1856
Query: 1350 KRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETNNL 1171
KRLR + YEDFL LKLKAKVDFT PTFCGWNL P GI+KKPQL+YERMC+A ETNNL
Sbjct: 1857 KRLRVSNEYEDFLCKLKLKAKVDFTRTPTFCGWNLTPFGIFKKPQLVYERMCVARETNNL 1916
Query: 1170 ASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLFKD 1000
A C+DNYA+EVS+AYKLGE+A+ RM E E +HY CVR I++ ++L+KSS+ D+F++
Sbjct: 1917 AQCIDNYAIEVSFAYKLGEQAVNRMSEIELNNHYQCVRTIIQNKHLMKSSIVDVFRN 1973
>ref|YP_004936159.1| unnamed protein product [Garlic common latent virus]
gi|359471926|gb|AEV51822.1| replicase [Garlic common
latent virus]
Length = 1951
Score = 980 bits (2534), Expect = 0.0
Identities = 559/1206 (46%), Positives = 717/1206 (59%), Gaps = 44/1206 (3%)
Frame = -3
Query: 4491 GPEVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVP---- 4324
GP F MP H+ + S G TFRKL R P + + P
Sbjct: 805 GPMCFEMPASLLLEHRWKISKSSTGCTIMTFRKL---------RQGEPPVVETTAPTVQK 855
Query: 4323 --GSDSAFSF-----TPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPE 4165
G DS+F++ T M AP +E Q
Sbjct: 856 GVGVDSSFTWEQYGVTILSSHMSKAPDGRIEPQR-------------------------- 889
Query: 4164 NFVRIDVPGDGYCFYHAVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMHGANPAEGE 3985
GDG CF+H + + NL L+R + + + G P
Sbjct: 890 --------GDGSCFFHCMEPFTNLEASLLRRTIAKEMARDSKVLESDLVECQGNGPVSDG 941
Query: 3984 AICLVARKLKMRX-------------------------------YNVAIPRNGCVLTAIC 3898
I R L ++ +++ P N CVL A+
Sbjct: 942 VIAYTIRFLGLKVRFFSPELNEVRKFSTCTATNFWVDVLHHGNHFDLLYPTNDCVLIALE 1001
Query: 3897 EALNRTRADVLKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXXXXXXXX 3718
+ L R R D+LKVLSR + I G GLT+ ++E F I +
Sbjct: 1002 QGLGRKRGDILKVLSRPQHSDIFQIATGGVGLTLELLEPIFQCFQIDARVLCGSEVFTYP 1061
Query: 3717 XXGSIERCFTFYDDHLAFVKRHNGFCFSSRNSTHAPGAAVGRSALALLDCAGSKINAVFE 3538
G+ F D HL+F SS + GR +L+CAG+ + +FE
Sbjct: 1062 TSGTFALDFELADGHLSFKSARRKETVSSCLKV-VEASPHGR---LVLNCAGTGV--LFE 1115
Query: 3537 L--SRAEKLIESLHSGLTGIMSSELFNSRSKLVPLTETVRLGRAVTTILGTFGSGKSTLY 3364
+ + A KL ESL G TGI+SS+LFN+R + ++ T L R + I G FG GKSTL
Sbjct: 1116 ICSNTAHKLAESLFDGRTGIVSSKLFNNRERF-EVSSTSLLPRTLNVICGVFGCGKSTLL 1174
Query: 3363 QKFFQKSLGKHIHFVSPRKVLAGAFRDDLKALRDQDGAEISKEARKGWVVCTFETFVLNH 3184
K +K LG I FV+PR+ LA ++++ E + TFE F+
Sbjct: 1175 CKALEKGLGVCI-FVTPRRSLAEQMTQLVQSV----------ETSTSVTILTFEKFLHQM 1223
Query: 3183 KKVGSTHVVILDEVQLFPPGYLDLIAYLLPQQVLIYLAGDPCQSEYDNERDRVFLEPLGN 3004
V +I DE QL+PPGY DL+ L + ++L GDPCQS+YDN +DR E L
Sbjct: 1224 VNVKEGSTIIFDEFQLYPPGYFDLVCSQLTDGISLHLLGDPCQSDYDNAKDRGVFEGLLP 1283
Query: 3003 NLDKLLGDESYRYATLSHRFTYSGFIGRLPCRFVESETSDEGSIELHNGLDELSVCLAEI 2824
+ ++L +RYAT S+RF+ F+GRLPC + D E+ G++++ E
Sbjct: 1284 DHQRILQGIQFRYATRSYRFSNPNFVGRLPCAISNTNEDDFEDFEILEGIEQVQEIDVEC 1343
Query: 2823 ILVSSFAEKTAIRAYVGAGAKILTFGESTGLTVDHSAVIISQSSRQASEARWLTALSRAR 2644
LVSSF EK A+RA VG + TFGESTGLT D AV++S++S+ ASE RW+TAL+RAR
Sbjct: 1344 YLVSSFIEKQAVRALVGLDKVVQTFGESTGLTYDCVAVVVSEASKLASERRWITALTRAR 1403
Query: 2643 KHVSLFSTLEGHESRVAEYFEGRVLAHFLNATSTLGDLKNLMPGRPRFAGELMPSAGADF 2464
K V+ + L + +AE F R L FL+ T+++ +L+ L+PG P F EL+P+ GA+
Sbjct: 1404 KRVTFITNLGCSKHLIAEIFSNRALGRFLSCTASIDNLRCLLPGEPNFVEELVPTIGANL 1463
Query: 2463 MVAELKLVGDPWLKSAMFLGQQSDMLEPVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDM 2284
V E K+ GDPWLK+ +FLGQ +D+ + + D E F+TH+ RS +E R + D +
Sbjct: 1464 GVVEEKVSGDPWLKTMLFLGQVADVADEIDVDEALQIEPFKTHVARSNLEGVRALWHDKI 1523
Query: 2283 LAKEHREKRMGRIVSDQFSEDHSKNNGYRLTNAAERFEAIYPRHRGSDTVTFIMAARKRL 2104
KEHREKRMG +VS+QF++ HSKN G +LTNAAERFE IYP+H+GSDTVTFIM ARKRL
Sbjct: 1524 RLKEHREKRMGYLVSEQFTDMHSKNMGKKLTNAAERFETIYPKHKGSDTVTFIMGARKRL 1583
Query: 2103 RFSKPAIEMAKLASAKVYGPFMLEEFLKLVPLKPGLDRQLMAESVAEFEKKKLSKSAAII 1924
RFSKPA+E KL A + FML+EFLK VPLK ++ M S+A+FE+KK SKSAA I
Sbjct: 1584 RFSKPAVEARKLMDASNFSEFMLQEFLKHVPLKKPHNQAFMDASLADFEEKKTSKSAATI 1643
Query: 1923 ENHAGRSNSDWPVDTGLVFMKSQHCTKFGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIE 1744
NHAGRS DW +DTGLVFMKSQHCTKF NR + AKAAQ+IVCFQH VLCR AP++RYIE
Sbjct: 1644 ANHAGRSCRDWLIDTGLVFMKSQHCTKFDNRFRDAKAAQAIVCFQHAVLCRLAPFVRYIE 1703
Query: 1743 KKLHQVLPQNFYIHSGKGLDELNAWVKIGKFSGICTESDYEAFDASQDHFIMAFEIELMR 1564
+K+ +VLP+ FYIHSGKGL+ELNAWV G+F G+CTESDYEAFDASQD +I+AFE+ +M+
Sbjct: 1704 RKIAEVLPEKFYIHSGKGLEELNAWVTRGRFEGVCTESDYEAFDASQDQYILAFELHVMK 1763
Query: 1563 YLRLPIDLINDYIFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYDLNGKEF 1384
YL LP DLI DY FIK HLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRY++ G E
Sbjct: 1764 YLGLPRDLIEDYKFIKMHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYEIKGHER 1823
Query: 1383 ICFAGDDMCAAKRLRHRSTYEDFLSNLKLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYE 1204
ICFAGDDMCA RLRHR E FL LKLKAKV FT KPTFCGWNLC DGIYKKPQL+ E
Sbjct: 1824 ICFAGDDMCANARLRHRLDQEKFLGLLKLKAKVSFTQKPTFCGWNLCSDGIYKKPQLVLE 1883
Query: 1203 RMCIAMETNNLASCLDNYALEVSYAYKLGERAIERMDEQEQASHYNCVRLIVKKRYLLKS 1024
R+CIA ETNNLA C+DNYALEV++AYK+GERA+ RMDE+E SHYNCVR+I++ + L+KS
Sbjct: 1884 RLCIAKETNNLACCIDNYALEVAFAYKMGERAVLRMDEEELQSHYNCVRIILQNKNLIKS 1943
Query: 1023 SVADLF 1006
+V F
Sbjct: 1944 NVLTYF 1949
>ref|YP_001552317.1| replicase [Phlox Virus B] gi|157932100|gb|ABW05092.1| replicase
[Phlox Virus B]
Length = 2051
Score = 978 bits (2529), Expect = 0.0
Identities = 559/1239 (45%), Positives = 741/1239 (59%), Gaps = 76/1239 (6%)
Frame = -3
Query: 4494 EGPEVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVN------NPAISDV 4333
EGP F MP FQ THKHSV G + GR S TFR L A A+ V+ +P +D
Sbjct: 810 EGPMQFTMPMDFQGTHKHSVSGTTKGRESVTFRVLRACETAQEKEVDAEQEPESPPDTDE 869
Query: 4332 E-------VPGSDSAFSFTPSVEAM---DGAPANVVEGQDAAITTACTVGEKLGCNVDYC 4183
E + ++ S VEA + G +A+ V + C ++Y
Sbjct: 870 ENELDKEKLSEDEAGGSEEKEVEAEPCGSSDQSGECGGSEASRDETLAVDMEC-CTIEYK 928
Query: 4182 AEPCPENFVRIDVPGDGYCFYHAVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMHGA 4003
P + ++DV GDG CF++A+ + L E+KR + + Q + +Q+
Sbjct: 929 EMPKGIKYNKVDVRGDGNCFWYALECALGLDPMEMKRLCKQVKYKDPTKQRKLNDQLQTG 988
Query: 4002 NPAEGEAI------------CLVA-------------------RKLKMRXYNVAIPRNGC 3916
AE E I CL A ++ + +N P+N C
Sbjct: 989 AYAEDEIISAATHIFNFQLICLSAGDTGLVVYSPKREFSQVVYMHIENQHFNWVEPKNNC 1048
Query: 3915 VLTAICEALNRTRADVLKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAFGIRCIIDXXX 3736
++ AI +LNR ++VLKVL + L G G+ + ++ FGI +++
Sbjct: 1049 LVRAIAVSLNRKTSEVLKVLEEGSCVGSVGTLWRGEGVALEDLDFYFDRFGINAMVEFEG 1108
Query: 3735 XXXXXXXXGSIERCFTFYDDHLAFVKRHNGFCFSSRNSTHAPGAAVGRSALALLDCAGSK 3556
G + FT D H+ F+ R++ V ++L ++ AGS
Sbjct: 1109 KAYNFNETGHLPAAFTLKDGHIEFIGRNSPSTVPMMRG-RVNTLTVSPNSLLIIKAAGST 1167
Query: 3555 INAVFELSRAEKLIESLHSGLTGIMSSELFNSRSKLVPLTETVRLGRAV--TTILGTFGS 3382
I + SRA+ L + H+G TG+M+S++FN+ L+ V ++LGTFGS
Sbjct: 1168 IEFRPDYSRAKCLADCFHTGCTGVMNSKIFNNSEHLLAHVNINDRPNTVQINSVLGTFGS 1227
Query: 3381 GKSTLYQKFFQKSLGKHIHFVSPRKVLAGAFRDDL----------KALRDQDGAEIS--- 3241
GKS+L+++FF + GK + +VSPR+ LA FR L K ++GA S
Sbjct: 1228 GKSSLFRRFFDANPGKGVFYVSPRRALADEFRQKLENAVVRTKRKKGASSKNGAGASTGP 1287
Query: 3240 -------KEARKGWVVCTFETFVLNHKKVGSTHVVILDEVQLFPPGYLDLIAYLLPQQVL 3082
+ RK W+VCTFE + V +ILDE+QL+PPGYLDLI L + V
Sbjct: 1288 DPNSQAERMKRKNWLVCTFEIILKKIHLVKPGMALILDEIQLYPPGYLDLICALCAEGVH 1347
Query: 3081 IYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYRYATLSHRFTYSGFIGRLPCRF- 2905
I + GDP QS+YDNE+DR +L L +D +L Y+Y S RF F GRLPC F
Sbjct: 1348 IVIGGDPIQSDYDNEKDRNWLSNLPPCIDSVLEGAEYKYVIKSRRFKNGNFQGRLPCEFG 1407
Query: 2904 --VESETSDEGSIELHNGLDELSVC---LAEIILVSSFAEKTAIRAYV-GAGAKILTFGE 2743
+E + ++E L++GL+ L V +++ LVSSF EK + A+ G+ +LTFGE
Sbjct: 1408 TQMEGQATEEHL--LYSGLEHLHVIPQEFSKVFLVSSFEEKKIVEAHFPGSNPTVLTFGE 1465
Query: 2742 STGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTLEGHESRVAEYFEGRVLAH 2563
STGL + +II+ S SE RW+TALSR +++ + + S +A + RVL
Sbjct: 1466 STGLNFKYGTIIITNVSAHTSEKRWVTALSRFSENICFVNLVNLSWSELARMYATRVLGR 1525
Query: 2562 FLNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVGDPWLKSAMFLGQQSDMLE 2383
FL + L DL +PG F + G D V E K+ GDPWLK + L Q D+ E
Sbjct: 1526 FLGKRAKLSDLLEHLPGVAVFTDSYDENIGKDEGVREEKVQGDPWLKGMVDLFQIEDVEE 1585
Query: 2382 PVVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKRMGRIVSDQFSEDHSKNNG 2203
+ E F+ HL ++E+E+ R ++ +LAKE RE R+G +VS+QF+++H + G
Sbjct: 1586 EEEQLEEMQTEWFKVHLPQAELESVRAKWVHKILAKEFREVRIGHLVSEQFTDEHPREQG 1645
Query: 2202 YRLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEMAKLASAKVYGPFMLEEFL 2023
+LTNAAERFEAIYPRH+ +DTVTF+MA +KRL+FS+PA E AKL A YG FML+EFL
Sbjct: 1646 KQLTNAAERFEAIYPRHKANDTVTFMMAVKKRLKFSRPATEKAKLVEAMPYGKFMLKEFL 1705
Query: 2022 KLVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNSDWPVDTGLVFMKSQHCTK 1843
K +P+ D ++M +S EFE+KKLSKSAA IENH+GRS DW +D GL+F KSQ CTK
Sbjct: 1706 KKIPMNKSRDTKMMEQSKLEFEEKKLSKSAATIENHSGRSCRDWLIDIGLIFSKSQLCTK 1765
Query: 1842 FGNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLPQNFYIHSGKGLDELNAWVK 1663
F NR ++AKAAQSIVCFQH VLCRFAPYMRYIEKKLHQ LP NFYIHSGKGL+ELN WV
Sbjct: 1766 FDNRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEKKLHQALPGNFYIHSGKGLEELNEWVM 1825
Query: 1662 IGKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLINDYIFIKTHLGSKLGNFA 1483
G+F G+CTESDYEAFDASQD +IMAFEIE+++YL LP DLI+DY FIKTHLGSKLGNFA
Sbjct: 1826 RGRFDGVCTESDYEAFDASQDQYIMAFEIEMIKYLGLPADLISDYEFIKTHLGSKLGNFA 1885
Query: 1482 IMRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMCAAKRLRHRSTYEDFLSNL 1303
IMRFSGEASTFLFNTMANMLFTFLRY++ G EFICFAGDDMCA+KRL YE FLS L
Sbjct: 1886 IMRFSGEASTFLFNTMANMLFTFLRYEIRGNEFICFAGDDMCASKRLPLSRAYEGFLSKL 1945
Query: 1302 KLKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETNNLASCLDNYALEVSYAYK 1123
KLKAKV F PTFCGW+L PDGIYKKPQL+ ERMCIA E NL C+DNYA+E+SYAYK
Sbjct: 1946 KLKAKVFFVKSPTFCGWHLSPDGIYKKPQLVMERMCIAKEKGNLIDCIDNYAIELSYAYK 2005
Query: 1122 LGERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLF 1006
+GE A+ RMDE+E + YNCVR++VK ++LLKS + +LF
Sbjct: 2006 MGELALCRMDEEETEAFYNCVRIVVKNKHLLKSDIKNLF 2044
>gb|AIZ76613.1| replicase polyprotein [Elderberry carlavirus A]
Length = 1995
Score = 976 bits (2524), Expect = 0.0
Identities = 542/1183 (45%), Positives = 729/1183 (61%), Gaps = 16/1183 (1%)
Frame = -3
Query: 4491 GPEVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAAAGVARSSRVNNPAISDVEVPG--S 4318
GP +MP GFQ +H HS+ C+ GR+S+TFR L+ V V P VE PG S
Sbjct: 836 GPCYMLMPGGFQESHLHSIEMCTEGRISYTFRVLSRT-VIEEEDVKLP----VESPGQLS 890
Query: 4317 DSAFSFTPSVEAMDGAPANVVEGQDAAITTACTVGEKLGCNVDYCAEPCPENFVRIDVPG 4138
+ A S +E + + D + E C+ + C N++ + +
Sbjct: 891 EDALSDGFDLEECRVSVHERISSFDYSFR------ENSSCSQSFLQ--CASNYLEVSLEH 942
Query: 4137 DGYCFYHAVGYYINLGGRELKREAFRTCTAEELAQPLVAEQMH------GANPAEGEAIC 3976
F H +G I + + + E+ V + +H N C
Sbjct: 943 LEESF-HKLGPNIII-------DCLPSWADLEVINFSVWQNIHIIILNLDLNQVVEYEPC 994
Query: 3975 LVARKL----KMRXYNVAIPRNGCVLTAICEALNRTRADVLKVLSREDYKQILSKLNEGR 3808
A KL K + + +PRNGCV+ AI E+L R DV K+L+ + + + L+ G
Sbjct: 995 DPALKLVLGYKDHKFMIGLPRNGCVIEAIAESLERNVLDVHKILNMKANRHLSDALDAGE 1054
Query: 3807 GLTIPVVEQAMAAFGIRCIIDXXXXXXXXXXXGSIERCFTFYDDHLAFVKRHNGFCFSSR 3628
GL + V+E +A FGI + G+ + F D+H+ ++ ++
Sbjct: 1055 GLDLHVIEDVLACFGICARVATEESTFEMNPSGNTLKNFQIIDNHMIYLPELK--TSETK 1112
Query: 3627 NSTHAPGAAVGRSALALLDCAGSKINAVFELSRAEKLIESLHSGLTGIMSSELFNSRSKL 3448
P + + AL L+ AG++I +AE L L G+TG +SS FN L
Sbjct: 1113 QLKARPRHCIPKGALLLMRNAGTEIEYSSNNLKAENLSRCLIEGVTGAISSSFFNGSKDL 1172
Query: 3447 VPLTETVRLGRAVTTILGTFGSGKSTLYQKFFQKSLGKHIHFVSPRKVLAGAFRDDLKAL 3268
+P T R + I GTFG+GKSTL++KF + G + FVSPR+ LA +
Sbjct: 1173 LPAGLTSPQIRKIVVIAGTFGAGKSTLFKKFVKLCPGCPVTFVSPRRGLADEIAHSILGK 1232
Query: 3267 RDQDGA-EISKEARKGWVVCTFETFVLNHKKVGSTHVVILDEVQLFPPGYLDLIAYLLPQ 3091
++ + +EA + W V TFE F+ + VV++DE+QL+PPG++DL++ LLP+
Sbjct: 1233 SNRKCTYQTKEEASRNWKVMTFEVFLKKARTTVKDGVVVVDEMQLYPPGFIDLVSLLLPR 1292
Query: 3090 QVLIYLAGDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYRYATLSHRFTYSGFIGRLPC 2911
+ ++L GDPCQS+YD+E+DR ++++LLGD SY Y S RF S F+GRLPC
Sbjct: 1293 ETHLFLIGDPCQSDYDSEKDRGRFLNFKPDMEELLGDRSYNYNLCSRRFKNSNFLGRLPC 1352
Query: 2910 RFVESETSDEGSIELHNG---LDELSVCLAEIILVSSFAEKTAIRAYVGAGAKILTFGES 2740
R E ++ + + +DEL + LVSSF EK I A G +TFGES
Sbjct: 1353 RMPELVSAPREDFYMCSSFGEVDELEDEYHQTFLVSSFVEKKIITARYPQGVCCMTFGES 1412
Query: 2739 TGLTVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTLEGHESRVAEYFEGRVLAHF 2560
TG ++I+ S+ +E RWLTALSR +++ + LE ++ +EGR LA F
Sbjct: 1413 TGRNFTKGTIVITHSASYTNERRWLTALSRFSENLCFLNLLEASFEQLLFIYEGRFLASF 1472
Query: 2559 LNATSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVGDPWLKSAMFLGQQSDMLEP 2380
L S+ L +++PG P++ G + E KL GDPWLK+A++LGQ D
Sbjct: 1473 LRGDSSFKQLGSVLPGNPKYTNAFSEKIGRELGEKEFKLQGDPWLKTAIYLGQSEDQEIE 1532
Query: 2379 VVGDMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKRMGRIVSDQFSEDHSKNNGY 2200
+V + + F+THL R + E R A++ +LAKE RE+ ++ QF +DHSKN G
Sbjct: 1533 MVQEQFAQEPWFKTHLPRFDAEPIRAAWVHRLLAKERRERWFKGNITMQFPDDHSKNRGA 1592
Query: 2199 RLTNAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEMAKLASAKVYGPFMLEEFLK 2020
+LTNAAER+EAIYPRHR SDT TF M+ +KRLRFSKPA+E AKL A +G ML+ FLK
Sbjct: 1593 QLTNAAERYEAIYPRHRNSDTATFFMSVKKRLRFSKPAVECAKLLEAAPFGESMLKLFLK 1652
Query: 2019 LVPLKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNSDWPVDTGLVFMKSQHCTKF 1840
VPLK +++ M+++V +FE+KK SKSAA IENHAGRS DW +D GL+FMKSQHCTKF
Sbjct: 1653 HVPLKSAHNKEFMSKAVEDFERKKCSKSAATIENHAGRSCRDWLIDVGLIFMKSQHCTKF 1712
Query: 1839 GNRCQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLPQNFYIHSGKGLDELNAWVKI 1660
R AKA QSIVCFQH VLCRFAPYMRYIE KL++VLP+ +Y+HSGKGL+ELN+WV
Sbjct: 1713 EKRFCEAKAGQSIVCFQHAVLCRFAPYMRYIEYKLNEVLPKKYYVHSGKGLEELNSWVIG 1772
Query: 1659 GKFSGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLINDYIFIKTHLGSKLGNFAI 1480
G F+G+CTESDYEAFDASQD FIMAFEIE+M+YL LP DLI DY FIKTHLGSKLGNFAI
Sbjct: 1773 GDFTGMCTESDYEAFDASQDQFIMAFEIEVMKYLGLPRDLIADYKFIKTHLGSKLGNFAI 1832
Query: 1479 MRFSGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMCAAKRLRHRSTYEDFLSNLK 1300
MRFSGEASTFLFNTMANMLFTF+RYDLNG E ICFAGDDMCA++RLR + YEDFL LK
Sbjct: 1833 MRFSGEASTFLFNTMANMLFTFMRYDLNGSESICFAGDDMCASRRLRLSTEYEDFLGKLK 1892
Query: 1299 LKAKVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETNNLASCLDNYALEVSYAYKL 1120
LKAKVDFT KPTFCGWNL PDGI+KKPQL+YERMC+A ETNNL C+DNYA+E+S+AYKL
Sbjct: 1893 LKAKVDFTRKPTFCGWNLTPDGIFKKPQLVYERMCVAKETNNLEQCIDNYAIEISFAYKL 1952
Query: 1119 GERAIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLFKDSLV 991
GE+A+ RM E+E ++Y CVR IV+ ++L++SS+ D+FK+S++
Sbjct: 1953 GEKAVNRMSEEELNNYYQCVRCIVQNKHLMRSSIVDVFKNSVI 1995
>emb|CAO78688.1| polyprotein [Chrysanthemum virus B]
Length = 2078
Score = 974 bits (2519), Expect = 0.0
Identities = 563/1237 (45%), Positives = 742/1237 (59%), Gaps = 73/1237 (5%)
Frame = -3
Query: 4491 GP-EVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAA-------------------AGVA 4372
GP ++F MP GFQ THKH+V S R+S TFR + AG A
Sbjct: 845 GPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGKKAGEA 904
Query: 4371 RSSRVNNPAISDVEVPGSDSAFSFTPSVEAMDGAPANVVEGQDAAITTACTVGEKL---- 4204
+ N + + G+ + S + + +G D TA + E
Sbjct: 905 EETEQPNTEKENPDEEGAGNEEGEHGSSNSRNKEREQGNDGSDCT-NTAESGAEAFTRHF 963
Query: 4203 -GCNVDYCAEPCPENFVRIDVPGDGYCFYHAVGYYINL---GGRELK----------REA 4066
GC V AE P + D G+G CF+ + + L G++L E
Sbjct: 964 NGCKVSVHAEKLPYTYNTTDCGGNGNCFWLCLANELGLCPFRGKKLALEYDLGSAGANET 1023
Query: 4065 FRTCTAE--------------------ELAQPLVAEQMHGANPAEGEAICLVARKLKMRX 3946
R+C E ++ QP ++ M P +GE + + +L
Sbjct: 1024 ARSCAGEGVYAVDEAIACAASVFRVAIKIYQPELSV-MTVFEPTKGERVIYL--ELSGEH 1080
Query: 3945 YNVAIPRNGCVLTAICEALNRTRADVLKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAF 3766
+ + NGCV+ A+ ALNR ++V+ V+ +++ L G G+ + V + F
Sbjct: 1081 FRLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVFHSLLELF 1140
Query: 3765 GIRCIIDXXXXXXXXXXXGSIERCFTFYDDHLAFVKRHNGFC---FSSRNSTHAPGAAVG 3595
I+ +I G E F DH+ V R G C F TH V
Sbjct: 1141 SIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTHE----VK 1196
Query: 3594 RSALALLDCAGSKINAVFELSRAEKLIESLHSGLTGIMSSELFNSRSKLVPLT---ETVR 3424
+L LL+ AG+ +N L+RA +L +SL SG TG++SS LFN + L P+ +
Sbjct: 1197 AESLELLNRAGTLLNYESTLARARRLADSLCSGTTGVVSSSLFNKKPNLFPVQFREKNES 1256
Query: 3423 LGRAVTTILGTFGSGKSTLYQKFFQKSLGKHIHFVSPRKVLAGAF-RDDLKALRDQDGAE 3247
L R V ++GT GSGKST+ + FF+ +LG+ + +VSPR+ L F R R+Q+ +
Sbjct: 1257 LSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQEERK 1316
Query: 3246 IS-KEARKGWVVCTFETFVLNHKKVGSTHVVILDEVQLFPPGYLDLIAYLLPQQVLIYLA 3070
+ K+ ++ W TFETF+L + S V+LDE+QL+PPGYLD+I YL + V + +A
Sbjct: 1317 AARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVHLIVA 1376
Query: 3069 GDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYRYATLSHRFTYSGFIGRLPCRFVESET 2890
GDPCQS+YDNERDR +L + +++++LL +SY++ SHRF F GRLPC E
Sbjct: 1377 GDPCQSDYDNERDRAWLSTMRSDVEQLLEGQSYKFNVQSHRFNNENFRGRLPCEITGKEV 1436
Query: 2889 SDEGSIE--LHNGLDELSVCLAE---IILVSSFAEKTAIRAY--VGAGAKILTFGESTGL 2731
++ S E L+ G +EL + E I LVSSF EK I + + K+ TFGESTGL
Sbjct: 1437 AESLSEEHLLYTGCEELVQIMDEYSKIFLVSSFEEKKIIETHFPISEQRKVYTFGESTGL 1496
Query: 2730 TVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTLEGHESRVAEYFEGRVLAHFLNA 2551
+II+ S SE RWLTALSR +++ + L + + ++ R L FL+
Sbjct: 1497 NFKVGTIIITNVSAATSEKRWLTALSRFSENICFVNLLGTDWNGLFGLYKHRALGRFLSK 1556
Query: 2550 TSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVGDPWLKSAMFLGQQSDMLEPVVG 2371
+ L DL + +PG+P+F L G D + KL+GDPWLK + LGQ D E +
Sbjct: 1557 QAQLKDLLDHLPGQPQFQNGLSTLIGRDAGKRKEKLLGDPWLKCMIDLGQAEDAEEVELL 1616
Query: 2370 DMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKRMGRIVSDQFSEDHSKNNGYRLT 2191
+ +E F+THL ++++E R ++ ++ KE RE RMG +VS+QF++D+ K G LT
Sbjct: 1617 EEVMQEEWFKTHLPQADLEGVRARWVHKIMLKEAREVRMGNMVSEQFTDDYPKELGTNLT 1676
Query: 2190 NAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEMAKLASAKVYGPFMLEEFLKLVP 2011
NAAERFE IYPRHR SDTVTFIMA +KRLRFS+PA+E AKL AK+YG F+L EFLK V
Sbjct: 1677 NAAERFETIYPRHRASDTVTFIMAVKKRLRFSRPAVEKAKLQEAKLYGKFLLNEFLKKVS 1736
Query: 2010 LKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNSDWPVDTGLVFMKSQHCTKFGNR 1831
LK + +M + +FE+KK SKSAA IENHAGRS DW +D GL+F KSQ CTKF NR
Sbjct: 1737 LKQAHNTTMMERAKFDFEEKKTSKSAATIENHAGRSCRDWLIDVGLIFSKSQLCTKFDNR 1796
Query: 1830 CQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLPQNFYIHSGKGLDELNAWVKIGKF 1651
+IAKAAQSIVCFQH VLCRFAPYMRYIE KLH+VLP FYIHSGKGL+ELN WV GKF
Sbjct: 1797 FRIAKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEVLPSRFYIHSGKGLEELNEWVIKGKF 1856
Query: 1650 SGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLINDYIFIKTHLGSKLGNFAIMRF 1471
GICTESDYEAFDASQD +I+AFE+ LM YL LP DLI DY FIK HLGSKLGNFAIMRF
Sbjct: 1857 EGICTESDYEAFDASQDQYIVAFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRF 1916
Query: 1470 SGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMCAAKRLRHRSTYEDFLSNLKLKA 1291
SGEASTFLFNTMANMLFTFLRY++ E ICFAGDD+CA++RL + +E FL+ LKLKA
Sbjct: 1917 SGEASTFLFNTMANMLFTFLRYNIRDSEHICFAGDDLCASERLCIKKEHEGFLNKLKLKA 1976
Query: 1290 KVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETNNLASCLDNYALEVSYAYKLGER 1111
KV F KPTFCGW+LCPDGIYKKPQL+ ERMCIA E NNLA+CLDNYA+EVSYAYKLGER
Sbjct: 1977 KVFFVDKPTFCGWHLCPDGIYKKPQLVLERMCIAKEKNNLANCLDNYAIEVSYAYKLGER 2036
Query: 1110 AIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLFKD 1000
A+ RMDE+E + YNCVR+I+K + LLKS + + +
Sbjct: 2037 AVNRMDEEELEAAYNCVRIIIKNKKLLKSDILGFYSN 2073
>emb|CAK54343.1| polyprotein, partial [Chrysanthemum virus B]
Length = 2075
Score = 974 bits (2519), Expect = 0.0
Identities = 563/1237 (45%), Positives = 742/1237 (59%), Gaps = 73/1237 (5%)
Frame = -3
Query: 4491 GP-EVFVMPEGFQATHKHSVIGCSAGRMSFTFRKLAA-------------------AGVA 4372
GP ++F MP GFQ THKH+V S R+S TFR + AG A
Sbjct: 842 GPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGKKAGEA 901
Query: 4371 RSSRVNNPAISDVEVPGSDSAFSFTPSVEAMDGAPANVVEGQDAAITTACTVGEKL---- 4204
+ N + + G+ + S + + +G D TA + E
Sbjct: 902 EETEQPNTEKENPDEEGAGNEEGEHGSSNSRNKEREQGNDGSDCT-NTAESGAEAFTRHF 960
Query: 4203 -GCNVDYCAEPCPENFVRIDVPGDGYCFYHAVGYYINL---GGRELK----------REA 4066
GC V AE P + D G+G CF+ + + L G++L E
Sbjct: 961 NGCKVSVHAEKLPYTYNTTDCGGNGNCFWLCLANELGLCPFRGKKLALEYDLGSAGANET 1020
Query: 4065 FRTCTAE--------------------ELAQPLVAEQMHGANPAEGEAICLVARKLKMRX 3946
R+C E ++ QP ++ M P +GE + + +L
Sbjct: 1021 ARSCAGEGVYAVDEAIACAASVFRVAIKIYQPELSV-MTVFEPTKGERVIYL--ELSGEH 1077
Query: 3945 YNVAIPRNGCVLTAICEALNRTRADVLKVLSREDYKQILSKLNEGRGLTIPVVEQAMAAF 3766
+ + NGCV+ A+ ALNR ++V+ V+ +++ L G G+ + V + F
Sbjct: 1078 FRLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVFHSLLELF 1137
Query: 3765 GIRCIIDXXXXXXXXXXXGSIERCFTFYDDHLAFVKRHNGFC---FSSRNSTHAPGAAVG 3595
I+ +I G E F DH+ V R G C F TH V
Sbjct: 1138 SIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTHE----VK 1193
Query: 3594 RSALALLDCAGSKINAVFELSRAEKLIESLHSGLTGIMSSELFNSRSKLVPLT---ETVR 3424
+L LL+ AG+ +N L+RA +L +SL SG TG++SS LFN + L P+ +
Sbjct: 1194 AESLELLNRAGTLLNYESTLARARRLADSLCSGTTGVVSSSLFNKKPNLFPVQFREKNES 1253
Query: 3423 LGRAVTTILGTFGSGKSTLYQKFFQKSLGKHIHFVSPRKVLAGAF-RDDLKALRDQDGAE 3247
L R V ++GT GSGKST+ + FF+ +LG+ + +VSPR+ L F R R+Q+ +
Sbjct: 1254 LSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQEERK 1313
Query: 3246 IS-KEARKGWVVCTFETFVLNHKKVGSTHVVILDEVQLFPPGYLDLIAYLLPQQVLIYLA 3070
+ K+ ++ W TFETF+L + S V+LDE+QL+PPGYLD+I YL + V + +A
Sbjct: 1314 AARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVHLIVA 1373
Query: 3069 GDPCQSEYDNERDRVFLEPLGNNLDKLLGDESYRYATLSHRFTYSGFIGRLPCRFVESET 2890
GDPCQS+YDNERDR +L + +++++LL +SY++ SHRF F GRLPC E
Sbjct: 1374 GDPCQSDYDNERDRAWLSTMRSDVEQLLEGQSYKFNVQSHRFNNENFRGRLPCEITGKEV 1433
Query: 2889 SDEGSIE--LHNGLDELSVCLAE---IILVSSFAEKTAIRAY--VGAGAKILTFGESTGL 2731
++ S E L+ G +EL + E I LVSSF EK I + + K+ TFGESTGL
Sbjct: 1434 AESLSEEHLLYTGCEELVQIMDEYSKIFLVSSFEEKKIIETHFPISEQRKVYTFGESTGL 1493
Query: 2730 TVDHSAVIISQSSRQASEARWLTALSRARKHVSLFSTLEGHESRVAEYFEGRVLAHFLNA 2551
+II+ S SE RWLTALSR +++ + L + + ++ R L FL+
Sbjct: 1494 NFKVGTIIITNVSAATSEKRWLTALSRFSENICFVNLLGTDWNGLFGLYKHRALGRFLSK 1553
Query: 2550 TSTLGDLKNLMPGRPRFAGELMPSAGADFMVAELKLVGDPWLKSAMFLGQQSDMLEPVVG 2371
+ L DL + +PG+P+F L G D + KL+GDPWLK + LGQ D E +
Sbjct: 1554 QAQLKDLLDHLPGQPQFQNGLSTLIGRDAGKRKEKLLGDPWLKCMIDLGQAEDAEEVELL 1613
Query: 2370 DMDDPQEVFRTHLLRSEMETSRVAFIDDMLAKEHREKRMGRIVSDQFSEDHSKNNGYRLT 2191
+ +E F+THL ++++E R ++ ++ KE RE RMG +VS+QF++D+ K G LT
Sbjct: 1614 EEVMQEEWFKTHLPQADLEGVRARWVHKIMLKEAREVRMGNMVSEQFTDDYPKELGTNLT 1673
Query: 2190 NAAERFEAIYPRHRGSDTVTFIMAARKRLRFSKPAIEMAKLASAKVYGPFMLEEFLKLVP 2011
NAAERFE IYPRHR SDTVTFIMA +KRLRFS+PA+E AKL AK+YG F+L EFLK V
Sbjct: 1674 NAAERFETIYPRHRASDTVTFIMAVKKRLRFSRPAVEKAKLQEAKLYGKFLLNEFLKKVS 1733
Query: 2010 LKPGLDRQLMAESVAEFEKKKLSKSAAIIENHAGRSNSDWPVDTGLVFMKSQHCTKFGNR 1831
LK + +M + +FE+KK SKSAA IENHAGRS DW +D GL+F KSQ CTKF NR
Sbjct: 1734 LKQAHNTTMMERAKFDFEEKKTSKSAATIENHAGRSCRDWLIDVGLIFSKSQLCTKFDNR 1793
Query: 1830 CQIAKAAQSIVCFQHFVLCRFAPYMRYIEKKLHQVLPQNFYIHSGKGLDELNAWVKIGKF 1651
+IAKAAQSIVCFQH VLCRFAPYMRYIE KLH+VLP FYIHSGKGL+ELN WV GKF
Sbjct: 1794 FRIAKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEVLPSRFYIHSGKGLEELNEWVIKGKF 1853
Query: 1650 SGICTESDYEAFDASQDHFIMAFEIELMRYLRLPIDLINDYIFIKTHLGSKLGNFAIMRF 1471
GICTESDYEAFDASQD +I+AFE+ LM YL LP DLI DY FIK HLGSKLGNFAIMRF
Sbjct: 1854 EGICTESDYEAFDASQDQYIVAFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRF 1913
Query: 1470 SGEASTFLFNTMANMLFTFLRYDLNGKEFICFAGDDMCAAKRLRHRSTYEDFLSNLKLKA 1291
SGEASTFLFNTMANMLFTFLRY++ E ICFAGDD+CA++RL + +E FL+ LKLKA
Sbjct: 1914 SGEASTFLFNTMANMLFTFLRYNIRDSEHICFAGDDLCASERLCIKKEHEGFLNKLKLKA 1973
Query: 1290 KVDFTAKPTFCGWNLCPDGIYKKPQLIYERMCIAMETNNLASCLDNYALEVSYAYKLGER 1111
KV F KPTFCGW+LCPDGIYKKPQL+ ERMCIA E NNLA+CLDNYA+EVSYAYKLGER
Sbjct: 1974 KVFFVDKPTFCGWHLCPDGIYKKPQLVLERMCIAKEKNNLANCLDNYAIEVSYAYKLGER 2033
Query: 1110 AIERMDEQEQASHYNCVRLIVKKRYLLKSSVADLFKD 1000
A+ RMDE+E + YNCVR+I+K + LLKS + + +
Sbjct: 2034 AVNRMDEEELEAAYNCVRIIIKNKKLLKSDILGFYSN 2070