BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00027584
         (435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]                68   7e-10
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...    63   3e-08
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    62   5e-08
gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subc...    62   6e-08
dbj|BAB39950.1| putative polyprotein [Oryza sativa Japonica Group]     61   1e-07

>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 32/118 (27%), Positives = 62/118 (52%)
 Frame = +3

Query: 81  TPTAPLPDEIPITFTRGELATTTTEKEQLLTIRVVIQNLNVKRILIDTGAAKNVMYYSCF 260
           TPT   P   PITFT  +       ++  + I V I    + ++L+D G++ +++Y+  F
Sbjct: 611 TPTQRRPHIPPITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVDQGSSVDILYWETF 670

Query: 261 KQLGLSEAHLTYYADSLEGFTNHRIHVKGSLRALVKIEDGQTTRTETIEFLVVDLNSN 434
           K++ + EA +  Y + + GF+  R+  KG +       D   ++T  I +L+V+ N++
Sbjct: 671 KKMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYTTFGDDYLSKTINIRYLLVNANTS 728


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
 Frame = +3

Query: 30  SMRQIKSQIFILNH---SVQTPTAPLPDEIPITFTRGELATTTTEKEQLLTIRVVIQNLN 200
           S RQ K+ +  ++H   S Q+   P      I+F   +        +  L I V I    
Sbjct: 224 SKRQRKAYVRQIHHVGTSYQS-VPPAYSNTVISFGPEDAEGILFPHQDPLVISVEIAQCE 282

Query: 201 VKRILIDTGAAKNVMYYSCFKQLGLSEAHLTYYADSLEGFTNHRIHVKGSLRALVKIEDG 380
           V+R+L+D G++ +V++Y  FK++ + E  LT+    L+GF  H++H  G +   V    G
Sbjct: 283 VQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGIPLQGFGGHQVHTIGKISLQVVFGGG 342

Query: 381 QTTRTETIEFLVVDL 425
           +  R E + F VVD+
Sbjct: 343 ENKRREEVVFDVVDM 357


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
 Frame = +3

Query: 30   SMRQIKSQIFILNH--SVQTPTAPLPDEIPITFTRGELATTTTEKEQLLTIRVVIQNLNV 203
            S RQ K+ +  +NH  ++     P+  +  I+F   +        +  L + V I    V
Sbjct: 707  SKRQRKAYVRQVNHVGTIYQSKPPVYSKTVISFGPEDAEGILFPHQDPLVVSVEIAQCEV 766

Query: 204  KRILIDTGAAKNVMYYSCFKQLGLSEAHLTYYADSLEGFTNHRIHVKGSLRALVKIEDGQ 383
            +R+LID G++ +V++Y  FK++ + E  LT     L+GF   ++H  G +   V    G 
Sbjct: 767  QRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGT 826

Query: 384  TTRTETIEFLVVDL 425
              R E I F VVD+
Sbjct: 827  NVRKEEIVFDVVDM 840


>gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 504

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
 Frame = +3

Query: 30  SMRQIKSQIFILNHSVQTPTAPLP---DEIPITFTRGELATTTTEKEQLLTIRVVIQNLN 200
           S RQ K+ +  +NH V T    +P       I+F   +        +  L I V I    
Sbjct: 58  SKRQRKAYVRQINH-VGTSYQSIPPAYSNTVISFGPEDAEGILFPHQDPLVISVEITQCE 116

Query: 201 VKRILIDTGAAKNVMYYSCFKQLGLSEAHLTYYADSLEGFTNHRIHVKGSLRALVKIEDG 380
           V+R+L+D G++ +V++Y  FK++ + E  LT+    L+GF   ++H  G +   V    G
Sbjct: 117 VQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGIPLQGFGGQQVHAIGKISLQVVFGGG 176

Query: 381 QTTRTETIEFLVVDL 425
           +  R E + F VVD+
Sbjct: 177 ENKRREEVVFDVVDM 191


>dbj|BAB39950.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1579

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
 Frame = +3

Query: 24  KLSMRQIKSQIFILNHSVQTPTAPLPDEIPITFTRG-ELATTTTEKEQLLTIRVVIQNLN 200
           +LS RQ K QI ++ HS+ +     P  +    + G E A      + LL I   I    
Sbjct: 395 QLSKRQKKMQIRMV-HSITSVGEGAPQYLNQLISFGPEDAGVMFPHQDLLVISAEIAGFE 453

Query: 201 VKRILIDTGAAKNVMYYSCFKQLGLSEAHLTYYADSLEGFTNHRIHVKGSLRALVKIEDG 380
           V+RIL+D G++ +V++   + ++GLS   LT    SL GF    + V G    L+    G
Sbjct: 454 VRRILVDGGSSADVIFAEAYAKMGLSTQALTPAPASLRGFGGEAVQVLGQALLLIAFGSG 513

Query: 381 QTTRTETIEFLVVDLNSN 434
           +  R E I F V+D+  N
Sbjct: 514 ENRREEQILFDVIDIPYN 531