BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00027080
         (505 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript...    62   4e-08
gb|ABA97942.1| retrotransposon protein, putative, LINE subclass ...    62   5e-08
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    61   8e-08
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop...    60   1e-07
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...    60   1e-07

>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 320

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
 Frame = -3

Query: 461 EDIVVWSEAKTKYSVHADKMAMEEERIQMAL---TRFVNFNYKMVW*PNPTPRSCIVLWL 291
           +D  +W     K  +HA        +  +AL      V + YK VW  N  P+   + W+
Sbjct: 117 DDSFIW-----KTDLHAPSNIFSTAKTSLALHPQNHIVPW-YKAVWFKNHVPKHAFICWV 170

Query: 290 LSIGRLQTWERLKQVGFRAPTICVFCRREEDTDCHLFFTCPTINRMW 150
           ++  RL T +RL+  G   P +C+ C   +++  HLFF CP    +W
Sbjct: 171 VAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVW 217


>gb|ABA97942.1| retrotransposon protein, putative, LINE subclass [Oryza sativa
            Japonica Group]
          Length = 985

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
 Frame = -3

Query: 464  VEDIVVWS-EAKTKYSVHADKMAMEEERIQMALTRFVNFNYKMVW*PNPTPRSCIVLWLL 288
            V D ++W  E+  +YS  +   A+   RI        +F YK +W     PR C  LWL+
Sbjct: 783  VPDSLIWRWESSGEYSSWSAYRALLSGRI--------HFEYKPIWKSWAPPRCCYFLWLV 834

Query: 287  SIGRLQTWERLKQVGFRAPTICVFCRREEDTDCHLFFTCPTINRMWELSKEAFTFS 120
            ++ R  T + L+  G   P  CV C + ++T  HL   CP   ++W ++  A   S
Sbjct: 835  ALNRCWTADCLRSHGLSHPACCVLCDQSDETIDHLLVACPESRQLWWIALRAIGHS 890


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
 Frame = -3

Query: 470 VRVEDIVVWSEAKTKYSVH-ADKMAMEEERIQMALTRFVNFNYKMVW*PNPTPRSCIVLW 294
           V  ED+V+W     ++    + K    + R Q     +    Y+ +W  + TP+   + W
Sbjct: 238 VETEDVVLWKGKGGRFKPSFSTKETWADTREQKPRNEW----YQGIWFSHATPKYSFITW 293

Query: 293 LLSIGRLQTWERLKQVGFRAPTICVFCRREEDTDCHLFFTCPTINRMWE-LSKEAFTFSA 117
           L +  RL T +R+          CVFC+ + +T  HLFFTC     +W  L+ +  T   
Sbjct: 294 LATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTSKLLTRHY 353

Query: 116 TTQGTSTMGIL--EALRNQRIF 57
           +T  T+ + +L  + L N R+F
Sbjct: 354 STDWTTILKLLTDKTLGNNRLF 375


>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
          Length = 278

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = -3

Query: 347 YKMVW*PNPTPRSCIVLWLLSIGRLQTWERLKQVGFRAPTICVFCRREEDTDCHLFFTCP 168
           Y+ VW P+ TP+   V WL    RL T +RL +    A   CVFC  E +T  HLFF+CP
Sbjct: 112 YRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCP 171

Query: 167 TINRMW 150
             +++W
Sbjct: 172 YSSQIW 177


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = -3

Query: 347 YKMVW*PNPTPRSCIVLWLLSIGRLQTWERLKQVGFRAPTICVFCRREEDTDCHLFFTCP 168
           Y+ VW P+ TP+   V WL    RL T +RL +    A   CVFC  E +T  HLFF+CP
Sbjct: 280 YRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCP 339

Query: 167 TINRMW 150
             +++W
Sbjct: 340 YSSQIW 345