BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00025175
         (702 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexic...    92   1e-16
gb|AAT81704.1| putative retrotransposon protein [Oryza sativa Ja...    89   1e-15
gb|AAR00612.1| putative retrotransposon gag protein, 5'-partial ...    89   1e-15
gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]                            88   1e-15
gb|AAX94966.1| retrotransposon protein, putative, unclassified [...    88   2e-15

>gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
          Length = 1604

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
 Frame = +1

Query: 19  LRGPTSTWWKSILRARDNGD-VPWEDFVDLFESEYIPASTKAELLREFVEFKQGERTVAQ 195
           LRG   +WW+S L    N D + WE+F   F   ++PA        EF+  KQG  +V++
Sbjct: 209 LRGAAQSWWESYLATHANPDTITWEEFRGSFRQYHVPAGLMTLKKEEFLALKQGSSSVSE 268

Query: 196 YATRFLELSKFAPSLVATDQLKNRRFIGGLRGPIREKLLTSVLLPYRDVLDFALSLEIEV 375
           Y  RFL+LS++AP  V TD  +  RF+ GL  P++ +L+      ++ ++D A+  E + 
Sbjct: 269 YRDRFLQLSRYAPEDVNTDAKRQYRFLRGLVDPLQYQLMNHTFPTFQHLIDRAIMTERKR 328

Query: 376 KDARAHKGKQVIIQPGESSTVRLPPLRP 459
           K+    K K    QPG SS  R    +P
Sbjct: 329 KEMEDRKRKISGPQPGSSSRPRFSGNQP 356


>gb|AAT81704.1| putative retrotransposon protein [Oryza sativa Japonica Group]
           gi|108709812|gb|ABF97607.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 626

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
 Frame = +1

Query: 10  THHLRGPTSTWWKSILRARDNGD-VPWEDFVDLFESEYIPASTKAELLREFVEFKQGERT 186
           +H L+GP S WW      R  G  + WE+F   F   +IPA   A   REF   KQ +RT
Sbjct: 359 SHQLQGPASEWWDHFRMNRAEGQPITWEEFTKGFNKTHIPAGVVALKKREFRTLKQKDRT 418

Query: 187 VAQYATRFLELSKFAPSLVATDQLKNRRFIGGLRGPIREKLLTSVLLPYRDVLDFALSLE 366
           VA+Y   F  L+++AP  V TD+ +  +F+ GL+  +   L++   + ++ ++D A+ LE
Sbjct: 419 VAEYLHEFNRLARYAPEDVRTDEERQEKFLEGLKDELSVTLISHDYVDFQQLVDKAIRLE 478

Query: 367 IEVKDARAHKGKQVIIQ--PGESSTVRLPPLR 456
            +       K K  + Q   G S   R+ PL+
Sbjct: 479 DKKNRIDNRKRKMTVFQEAQGSSQRQRIKPLQ 510



 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
 Frame = +1

Query: 13  HHLRGPTSTWWKSILRAR--DNGDVPWEDFVDLFESEYIPASTKAELLREFVEFKQGERT 186
           + L GP   WW +   AR  D G+  WE+F   F   ++PA+       EF   +QG  T
Sbjct: 95  NQLEGPAGDWWDTYKEAREEDAGEPSWEEFTTAFRDNFMPAAVMRMKKNEFRRVRQGNTT 154

Query: 187 VAQYATRFLELSKFAPSLVATDQLKNRRFIGGLRGPIREKLLTSVLLPYRDVLDFALSLE 366
           + +Y  RF +L+++A   +A ++ K  +FI GL   +R  ++      ++ +++  + LE
Sbjct: 155 IQEYLNRFTQLARYATGDLADEEEKIDKFIEGLNDELRGPMIGQDHDSFQSLINKVVRLE 214

Query: 367 IEVK 378
            + K
Sbjct: 215 NDRK 218


>gb|AAR00612.1| putative retrotransposon gag protein, 5'-partial [Oryza sativa
           Japonica Group]
          Length = 294

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
 Frame = +1

Query: 10  THHLRGPTSTWWKSILRARDNGD-VPWEDFVDLFESEYIPASTKAELLREFVEFKQGERT 186
           +H L+GP S WW      R  G  + WE+F   F   +IPA   A   REF   KQ +RT
Sbjct: 27  SHQLQGPASEWWDHFRMNRAEGQPITWEEFTKGFNKTHIPAGVVALKKREFRTLKQKDRT 86

Query: 187 VAQYATRFLELSKFAPSLVATDQLKNRRFIGGLRGPIREKLLTSVLLPYRDVLDFALSLE 366
           VA+Y   F  L+++AP  V TD+ +  +F+ GL+  +   L++   + ++ ++D A+ LE
Sbjct: 87  VAEYLHEFNRLARYAPEDVRTDEERQEKFLEGLKDELSVTLISHDYVDFQQLVDKAIRLE 146

Query: 367 IEVKDARAHKGKQVIIQ--PGESSTVRLPPLR 456
            +       K K  + Q   G S   R+ PL+
Sbjct: 147 DKKNRIDNRKRKMTVFQEAQGSSQRQRIKPLQ 178


>gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]
          Length = 1470

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
 Frame = +1

Query: 19  LRGPTSTWWKSILRARDNGD-VPWEDFVDLFESEYIPASTKAELLREFVEFKQGERTVAQ 195
           L G  S WW +   A  N D + W++F + F S +IP+    +L +EF+   QG  +V++
Sbjct: 85  LEGAASDWWDAFTAAHPNADTITWQEFQENFRSHHIPSGIM-KLKKEFLSLTQGNMSVSE 143

Query: 196 YATRFLELSKFAPSLVATDQLKNRRFIGGLRGPIREKLLTSVLLPYRDVLDFALSLEIEV 375
           Y  RF +LS++AP  V TD+ +  RF+ GL GP+  +L +     ++ +L+ A+ LE + 
Sbjct: 144 YRDRFTQLSRYAPEEVDTDEKRQERFLEGLIGPLNYQLQSHTFPNFQTLLNKAIGLESKR 203

Query: 376 KDARAHKGK 402
           K+   HK K
Sbjct: 204 KELSDHKRK 212


>gb|AAX94966.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|62734112|gb|AAX96221.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group] gi|77549880|gb|ABA92677.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 412

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
 Frame = +1

Query: 10  THHLRGPTSTWWKSILRARDNGD-VPWEDFVDLFESEYIPASTKAELLREFVEFKQGERT 186
           +H L+GP S WW      R  G  + W +F + F+  +IP    A   REF   KQ +RT
Sbjct: 143 SHQLQGPASEWWDHFRMNRAEGQPITWAEFTETFKKIHIPVGVVALKKREFRALKQKDRT 202

Query: 187 VAQYATRFLELSKFAPSLVATDQLKNRRFIGGLRGPIREKLLTSVLLPYRDVLDFALSLE 366
           VA+Y   F  L+++AP  V TD+ +  +F+ GL+  +   L++   + ++ ++D A+ LE
Sbjct: 203 VAEYLHEFNRLARYAPEDVRTDEERQEKFLEGLKDELSVTLISHDYVDFQQLVDKAIRLE 262

Query: 367 IEVKDARAHKGKQVIIQ--PGESSTVRLPPLR 456
            +       K K ++ Q   G S   R+ PL+
Sbjct: 263 DKKNRMDNRKRKMIVFQEAQGSSQRQRIKPLQ 294