BLASTX nr result
ID: Aconitum21_contig00024469
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum21_contig00024469
(832 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 89 2e-25
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 86 3e-24
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ... 86 3e-24
ref|XP_002466618.1| hypothetical protein SORBIDRAFT_01g011130 [S... 79 2e-23
ref|XP_002439697.1| hypothetical protein SORBIDRAFT_09g018530 [S... 80 5e-21
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 89.4 bits (220), Expect(2) = 2e-25
Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Frame = +3
Query: 15 PRTSLLTGKKVWSIKAPRKIRNFIWRLLSNSLATKENLYRRKCSSDDICPICHLHKENLG 194
P S+ ++W++ K+++F+WR LS +LAT E L R D ICP CH E++
Sbjct: 1192 PHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESIN 1251
Query: 195 HCFFECQHAKIAWFTSFLQIDSSCL-SDLNPLDFWDSLTEKYKNEDNLPFIMSFV----- 356
H F C A +AW+ S DSS + + L DF E+N+ I++FV
Sbjct: 1252 HALFTCPFATMAWWLS----DSSLIRNQLMSNDF----------EENISNILNFVQDTTM 1297
Query: 357 --------AFLLWAIWNARNKWIFEGIQIEPRQTISKA-------LSEMINYKTIWDPDE 491
+L+W IW ARN +F + P +T+ A L+ ++K P
Sbjct: 1298 SDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTR 1357
Query: 492 SSSSKRIAWSPP 527
+ +I W P
Sbjct: 1358 QIAENKIEWRNP 1369
Score = 53.1 bits (126), Expect(2) = 2e-25
Identities = 34/97 (35%), Positives = 49/97 (50%)
Frame = +1
Query: 538 FVKINSDASWDPVTNSSCFGWVVRDHNGSYISGGHSSTQLCSTPLAAEAQALNYAISKAK 717
+VK N DA +D + GW++R+H G+ IS G S PL AE +AL A+ +
Sbjct: 1373 YVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTW 1432
Query: 718 HLNYPNMIVEFDSLNLINYLNSNCPDSAHIFHIIEDI 828
Y + +E D LIN +N S+ H +EDI
Sbjct: 1433 IRGYTQVFMEGDCQTLINLINGISFHSSLANH-LEDI 1468
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 85.5 bits (210), Expect(2) = 3e-24
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Frame = +3
Query: 15 PRTSLLTGKKVWSIKAPRKIRNFIWRLLSNSLATKENLYRRKCSSDDICPICHLHKENLG 194
P S+ ++W++ K+++F+WR LS +LAT E L R D CP CH E++
Sbjct: 1418 PHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESIN 1477
Query: 195 HCFFECQHAKIAWFTSFLQIDSSCL-SDLNPLDFWDSLTEKYKNEDNLPFIMSFV----- 356
H F C A +AW S DSS + + L DF E+N+ I++FV
Sbjct: 1478 HALFTCPFATMAWRLS----DSSLIRNQLMSNDF----------EENISNILNFVQDTTM 1523
Query: 357 --------AFLLWAIWNARNKWIFEGIQIEPRQTISKA-------LSEMINYKTIWDPDE 491
+L+W IW ARN +F + P +T+ A L+ ++K P
Sbjct: 1524 SDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTR 1583
Query: 492 SSSSKRIAWSPP 527
+ +I W P
Sbjct: 1584 QIAENKIEWRNP 1595
Score = 53.1 bits (126), Expect(2) = 3e-24
Identities = 34/97 (35%), Positives = 49/97 (50%)
Frame = +1
Query: 538 FVKINSDASWDPVTNSSCFGWVVRDHNGSYISGGHSSTQLCSTPLAAEAQALNYAISKAK 717
+VK N DA +D + GW++R+H G+ IS G S PL AE +AL A+ +
Sbjct: 1599 YVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTW 1658
Query: 718 HLNYPNMIVEFDSLNLINYLNSNCPDSAHIFHIIEDI 828
Y + +E D LIN +N S+ H +EDI
Sbjct: 1659 IRGYTQVFMEGDCQTLINLINGISFHSSLANH-LEDI 1694
>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
gi|332641254|gb|AEE74775.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 484
Score = 85.5 bits (210), Expect(2) = 3e-24
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Frame = +3
Query: 15 PRTSLLTGKKVWSIKAPRKIRNFIWRLLSNSLATKENLYRRKCSSDDICPICHLHKENLG 194
P S+ ++W++ K+++F+WR LS +LAT E L R D CP CH E++
Sbjct: 152 PHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESIN 211
Query: 195 HCFFECQHAKIAWFTSFLQIDSSCL-SDLNPLDFWDSLTEKYKNEDNLPFIMSFV----- 356
H F C A +AW S DSS + + L DF E+N+ I++FV
Sbjct: 212 HALFTCPFATMAWRLS----DSSLIRNQLMSNDF----------EENISNILNFVQDTTM 257
Query: 357 --------AFLLWAIWNARNKWIFEGIQIEPRQTISKA-------LSEMINYKTIWDPDE 491
+L+W IW ARN +F + P +T+ A L+ ++K P
Sbjct: 258 SDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTR 317
Query: 492 SSSSKRIAWSPP 527
+ +I W P
Sbjct: 318 QIAENKIEWRNP 329
Score = 53.1 bits (126), Expect(2) = 3e-24
Identities = 34/97 (35%), Positives = 49/97 (50%)
Frame = +1
Query: 538 FVKINSDASWDPVTNSSCFGWVVRDHNGSYISGGHSSTQLCSTPLAAEAQALNYAISKAK 717
+VK N DA +D + GW++R+H G+ IS G S PL AE +AL A+ +
Sbjct: 333 YVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTW 392
Query: 718 HLNYPNMIVEFDSLNLINYLNSNCPDSAHIFHIIEDI 828
Y + +E D LIN +N S+ H +EDI
Sbjct: 393 IRGYTQVFMEGDCQTLINLINGISFHSSLANH-LEDI 428
>ref|XP_002466618.1| hypothetical protein SORBIDRAFT_01g011130 [Sorghum bicolor]
gi|241920472|gb|EER93616.1| hypothetical protein
SORBIDRAFT_01g011130 [Sorghum bicolor]
Length = 463
Score = 79.0 bits (193), Expect(2) = 2e-23
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
Frame = +3
Query: 39 KKVWSIKAPRKIRNFIWRLLSNSLATKENLYRRKCSSDDICPICHLHKENLGHCFFECQH 218
K+VW + P KI++F+WR L NS ++NL RR CP+C+ E+ GH FF+C
Sbjct: 143 KRVWKLSCPNKIKHFLWRFLHNSHPLRDNLIRRGMEIVPRCPVCNQVGEDGGHLFFKCGM 202
Query: 219 AKIAWFTSFLQIDSSCLSDL-NPLDFWDSLTEKYKNEDNLPFIMSFVAFLLWAIWNARNK 395
A+ W L + L++ P+D + + ++ +M VA LW W+ RN
Sbjct: 203 ARQVWELLGLSTEREVLANFYTPIDVVEFILRASESRK----LMMIVA--LWYTWSERNA 256
Query: 396 WIFEGIQIEPRQTISKA----LSEMINYKTIWDPDESSSSKRIAWSPP 527
E + P QT+++ + EM +T +P + ++ WS P
Sbjct: 257 IREEDRRRSP-QTLARCVELYVQEMRTTETTANPTANQEQQQYKWSKP 303
Score = 56.6 bits (135), Expect(2) = 2e-23
Identities = 27/96 (28%), Positives = 51/96 (53%)
Frame = +1
Query: 541 VKINSDASWDPVTNSSCFGWVVRDHNGSYISGGHSSTQLCSTPLAAEAQALNYAISKAKH 720
+K+N D S+ P T + +G ++RDH G I G TP+ AE A + A +
Sbjct: 308 LKLNCDGSFSPETRAGSWGVLIRDHEGDVIMSGRGRVNHLMTPMQAELIACLQGVQLAAN 367
Query: 721 LNYPNMIVEFDSLNLINYLNSNCPDSAHIFHIIEDI 828
L +I+E D+L ++ + ++ + A + +++E+I
Sbjct: 368 LGIGRLILETDALEVVKAIKTSAYNYAAVGYLVEEI 403
>ref|XP_002439697.1| hypothetical protein SORBIDRAFT_09g018530 [Sorghum bicolor]
gi|241944982|gb|EES18127.1| hypothetical protein
SORBIDRAFT_09g018530 [Sorghum bicolor]
Length = 381
Score = 80.1 bits (196), Expect(2) = 5e-21
Identities = 45/141 (31%), Positives = 75/141 (53%)
Frame = +3
Query: 39 KKVWSIKAPRKIRNFIWRLLSNSLATKENLYRRKCSSDDICPICHLHKENLGHCFFECQH 218
KK+W + P KI+ +WR+ NSLA K N+ +K S D CP+C + E+ HCFF+C+
Sbjct: 54 KKLWGVPGPPKIKQCVWRVAHNSLAHKMNIKSKKISLDTRCPVCLRYDEDGAHCFFKCKD 113
Query: 219 AKIAWFTSFLQIDSSCLSDLNPLDFWDSLTEKYKNEDNLPFIMSFVAFLLWAIWNARNKW 398
+ W L ++ L N L + + E + ++ + FV L+W W+ RNK
Sbjct: 114 VRKVW--RELGMEDLRLKLANLLSAMEVVAEILRQRKDM-CVAVFV--LIWKWWSVRNK- 167
Query: 399 IFEGIQIEPRQTISKALSEMI 461
+ +G + QT + A+ +M+
Sbjct: 168 VNKGELMSSAQTTTSAIQDMV 188
Score = 47.4 bits (111), Expect(2) = 5e-21
Identities = 27/86 (31%), Positives = 44/86 (51%)
Frame = +1
Query: 529 SNGFVKINSDASWDPVTNSSCFGWVVRDHNGSYISGGHSSTQLCSTPLAAEAQALNYAIS 708
+ G +KIN D S+ T+ +G+V+ H+G+ + G S L AE A YA+
Sbjct: 214 TEGKLKINIDGSFMSGTSKGAWGFVILSHDGAIVIAGAGSLGPVHDALMAETMACKYAVE 273
Query: 709 KAKHLNYPNMIVEFDSLNLINYLNSN 786
A L ++++E DS L + L S+
Sbjct: 274 AAVQLGIAHVVIETDSSQLRDGLISS 299