BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00023983
         (912 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN63320.1| hypothetical protein VITISV_026425 [Vitis vinifera]   194   3e-47
ref|XP_003631786.1| PREDICTED: pentatricopeptide repeat-containi...   188   1e-45
ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selag...   113   5e-23
ref|XP_002513427.1| pentatricopeptide repeat-containing protein,...   107   5e-21
ref|XP_003619926.1| Pentatricopeptide repeat-containing protein ...   103   4e-20

>emb|CAN63320.1| hypothetical protein VITISV_026425 [Vitis vinifera]
          Length = 722

 Score =  194 bits (492), Expect = 3e-47
 Identities = 103/201 (51%), Positives = 134/201 (66%), Gaps = 2/201 (0%)
 Frame = +2

Query: 2    STCLLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFME-- 175
            STCL+QYF   G  S+  +LL+SMI NG NPT+V+FN+LLD LCK G  G A+RIF E  
Sbjct: 506  STCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLGTAHRIFREFR 565

Query: 176  NTIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKIS 355
            NT   P+TTSYNILI+AS+REG   LVEQL+ DM++  + PD +TY S I GLCK GKIS
Sbjct: 566  NTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAVTYGSFIKGLCKEGKIS 625

Query: 356  YALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDIWS 535
             A+ + D+  ++G  P    YN IL AMF+RGK  DI+ LLK M ++ C+P+  + +I  
Sbjct: 626  VAIQLRDQMLESGLTPTVTIYNTILAAMFQRGKFWDIVSLLKDMTMDGCEPNAVSIEILK 685

Query: 536  KAKLSGRMKIIPGFEKTLEFL 598
            +A     MK  P   K LEF+
Sbjct: 686  QAMSKCWMKRFPEVSKQLEFV 706



 Score = 79.7 bits (195), Expect = 9e-13
 Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 2/169 (1%)
 Frame = +2

Query: 47  DSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MENTIVCPDTTSYNILI 220
           ++  LL SM+  G  PT VS+N +L+G C++ +   A ++F   E     PD  S+N ++
Sbjct: 416 EALSLLQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTIL 475

Query: 221 YASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEAWKNGFN 400
            A+ ++G   ++ +++  M  + +  +V++   LI   C  GKIS  L +L+   +NG N
Sbjct: 476 SAACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLN 535

Query: 401 PGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDIWSKAKL 547
           P    +N++L  + + G L     + +        P+  +Y+I   A +
Sbjct: 536 PTVVTFNMLLDKLCKNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASI 584



 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 2/176 (1%)
 Frame = +2

Query: 5   TCLLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MEN 178
           T L+  F K G+  ++F +LD M  +G  P ++++ V++  LC +G  G A  I   M  
Sbjct: 262 TALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGK 321

Query: 179 TIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISY 358
               PD  +YN+++     +  +  + +L+  +  K I+PD  TY +L  GL K G++  
Sbjct: 322 EGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYAALTGGLLKRGQVRV 381

Query: 359 ALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYD 526
           A  +L      G       YNI  + + R  K  + + LL+ M+     P   +Y+
Sbjct: 382 ANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVEKGLVPTNVSYN 437



 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MENTI 184
           +L  F +     ++ QL D       +P +VSFN +L   CK+G   +  R+   ME   
Sbjct: 439 ILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMIRRVLYRMEYEG 498

Query: 185 VCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYAL 364
           V  +  S   LI      G+     +L+  M    +NP V+T+  L+  LCK G +  A 
Sbjct: 499 VKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLGTAH 558

Query: 365 FVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDIWSK 538
            +  E    G+ P T +YNI+++A  R G    +  LL+ M     KPD  TY  + K
Sbjct: 559 RIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAVTYGSFIK 616



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 4/177 (2%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFM----EN 178
           +L+ +   G   DS  + + M+     PT  + N+L+  L K G    A+ +F     + 
Sbjct: 159 ILKKWLGLGSLVDSMSVFEFMLRLEYFPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKG 218

Query: 179 TIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISY 358
            + C    SYN +++A  + G+ +    L+  +       +  +Y +L+ G  K G    
Sbjct: 219 CLKCAH--SYNPILWALCKCGQSYTALALLYSLKKMGAVHNAASYTALVYGFSKEGLWEE 276

Query: 359 ALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDI 529
           A  +LDE   +G  P    Y +I+  +   G++ D + +L  M    C PD+ TY++
Sbjct: 277 AFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIVTYNV 333


>ref|XP_003631786.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 629

 Score =  188 bits (478), Expect = 1e-45
 Identities = 100/194 (51%), Positives = 130/194 (67%), Gaps = 2/194 (1%)
 Frame = +2

Query: 2   STCLLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFME-- 175
           STCL+QYF   G  S+  +LL+SMI NG NPT+V+FN+LLD LCK G  G A+RIF E  
Sbjct: 398 STCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLGTAHRIFREFR 457

Query: 176 NTIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKIS 355
           NT   P+TTSYNILI+AS+REG   LVEQL+ DM++  + PD +TY S I GLCK GKIS
Sbjct: 458 NTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAVTYGSFIKGLCKEGKIS 517

Query: 356 YALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDIWS 535
            A+ + D+  ++G  P    YN IL AMF+RGK  DI+ LLK M ++ C+P+  + +I  
Sbjct: 518 VAIQLRDQMLESGLTPTITIYNTILAAMFQRGKFWDIVSLLKDMTMDGCEPNAVSIEILK 577

Query: 536 KAKLSGRMKIIPGF 577
           +A     MK  P F
Sbjct: 578 QAMSKCWMKRFPEF 591



 Score = 79.7 bits (195), Expect = 9e-13
 Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 2/169 (1%)
 Frame = +2

Query: 47  DSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MENTIVCPDTTSYNILI 220
           ++  LL SM+  G  PT VS+N +L+G C++ +   A ++F   E     PD  S+N ++
Sbjct: 308 EALSLLQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTIL 367

Query: 221 YASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEAWKNGFN 400
            A+ ++G   ++ +++  M  + +  +V++   LI   C  GKIS  L +L+   +NG N
Sbjct: 368 SAACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLN 427

Query: 401 PGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDIWSKAKL 547
           P    +N++L  + + G L     + +        P+  +Y+I   A +
Sbjct: 428 PTVVTFNMLLDKLCKNGLLGTAHRIFREFRNTGYFPNTTSYNILIHASI 476



 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
 Frame = +2

Query: 5   TCLLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MEN 178
           T L+  F K G+  ++F +LD M  +G  P ++++ V++  LC +G  G A  I   M  
Sbjct: 154 TALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGK 213

Query: 179 TIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISY 358
               PD  +YN+++     +  +  + +L+  +  K I+PD  TY +L  GL K  ++  
Sbjct: 214 EGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYAALTGGLLKRDQVRV 273

Query: 359 ALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYD 526
           A  +L      G       YNI  + + R  K  + + LL+ M+     P   +Y+
Sbjct: 274 ANKLLLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVEKGLVPTNVSYN 329



 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MENTI 184
           +L  F +     ++ QL D       +P +VSFN +L   CK+G   +  R+   ME   
Sbjct: 331 ILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMIRRVLYRMEYEG 390

Query: 185 VCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYAL 364
           V  +  S   LI      G+     +L+  M    +NP V+T+  L+  LCK G +  A 
Sbjct: 391 VKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDKLCKNGLLGTAH 450

Query: 365 FVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDIWSK 538
            +  E    G+ P T +YNI+++A  R G    +  LL+ M     KPD  TY  + K
Sbjct: 451 RIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYSWRLKPDAVTYGSFIK 508



 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 2/173 (1%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKG--YFGIAYRIFMENTI 184
           L+    KAGM  ++  +   ++  G      S+N +L  LCK G  Y  +A    ++   
Sbjct: 86  LISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYNPILWALCKCGQSYTALALLYSLKKMG 145

Query: 185 VCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYAL 364
              +  SY  L+Y   +EG       ++ +M      P+VITY  ++  LC  G+I  AL
Sbjct: 146 AVHNAASYTALVYGFSKEGLWEEAFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDAL 205

Query: 365 FVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTY 523
            +L +  K G +P    YN+IL  +F + +  +I  LL+ +      PD +TY
Sbjct: 206 DILGKMGKEGCDPDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTY 258



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 4/177 (2%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFM----EN 178
           +L+ +   G   DS  + + M+     PT  + N+L+  L K G    A+ +F     + 
Sbjct: 51  ILKKWLGLGSLVDSMSVFEFMLRLEYFPTEPTLNLLISMLSKAGMAREAHFVFRVLLGKG 110

Query: 179 TIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISY 358
            + C    SYN +++A  + G+ +    L+  +       +  +Y +L+ G  K G    
Sbjct: 111 CLKCAH--SYNPILWALCKCGQSYTALALLYSLKKMGAVHNAASYTALVYGFSKEGLWEE 168

Query: 359 ALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDI 529
           A  +LDE   +G  P    Y +I+  +   G++ D + +L  M    C PD+ TY++
Sbjct: 169 AFCMLDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIVTYNV 225


>ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
           gi|300160021|gb|EFJ26640.1| hypothetical protein
           SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  113 bits (283), Expect = 5e-23
 Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFME--NTI 184
           L+  F KA    ++ +LL  M S G  P +V+FN ++DGLCK    G A++I ++  N +
Sbjct: 299 LVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRM 358

Query: 185 VCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYAL 364
           + PD  ++NILI  + + G       L  +M  K++ PDV+T+ +LI GLCKAG++  A 
Sbjct: 359 LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAAR 418

Query: 365 FVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTY 523
            +LD     G  P    YN++++ + + G++ +    L+ M+ + C P+  TY
Sbjct: 419 DILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTY 471



 Score = 90.9 bits (224), Expect = 4e-16
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
 Frame = +2

Query: 29  KAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MENTIVCPDTT 202
           KAG    +  L + M++    P +++F  L+DGLCK G    A  I   M N  V P+  
Sbjct: 375 KAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVV 434

Query: 203 SYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEA 382
           +YN+L++   + G      + + +M +    P+ +TY SL+  LC+A +   AL ++ + 
Sbjct: 435 TYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKL 494

Query: 383 WKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTY-----DIWSKAKL 547
              G++P T  YNI++  +++ GK    I +L+ M+    +PD +T+      +     L
Sbjct: 495 KSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNL 554

Query: 548 SGRMKII 568
           +G M+++
Sbjct: 555 AGTMELL 561



 Score = 80.9 bits (198), Expect = 4e-13
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 3/173 (1%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFMENTI-- 184
           L+    KAG    +  +LD M + G  P +V++NVL+ GLCK G        F+E  +  
Sbjct: 404 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCE-FLEEMVSS 462

Query: 185 -VCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYA 361
              P++ +Y  L+YA  R        QL+  + +   +PD +TY  L+ GL K+GK   A
Sbjct: 463 GCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQA 522

Query: 362 LFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYT 520
           + VL+E    G  P +F +      + R G L   + LL+ ++     PD  T
Sbjct: 523 ITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATT 575



 Score = 76.3 bits (186), Expect = 9e-12
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
 Frame = +2

Query: 65  DSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MENTIVCPDTTSYNILIYASLRE 238
           D MI+ G  P +V++N L++GLCK      A+ +   M +  V PD  +Y++L+ A  + 
Sbjct: 247 DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKA 306

Query: 239 GEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEAWKNGFNPGTFAY 418
                  +L+  M ++   P+V+T+ S+I GLCK+ +   A  +  + +     P    +
Sbjct: 307 SRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTF 366

Query: 419 NIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTY 523
           NI++    + G       L + M+  + +PDV T+
Sbjct: 367 NILIAGACKAGNFEQASALFEEMVAKNMQPDVMTF 401



 Score = 73.2 bits (178), Expect = 8e-11
 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 6/179 (3%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFMENT--- 181
           L+    KAG   ++ +L   M S G  P +V+++VL++GLCK G    A  +  E T   
Sbjct: 122 LIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKS 181

Query: 182 -IVCPDTTSYNILIYASLREGEHFLVEQLIIDMH--NKHINPDVITYRSLICGLCKAGKI 352
             V P+  +YN  +    ++       +L+  +   +  ++PD +T+ +LI GLCK G+ 
Sbjct: 182 CDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQT 241

Query: 353 SYALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDI 529
             A    D+    G+ P    YN ++  + +  K+     +++ M+     PDV TY +
Sbjct: 242 DEA--CNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSV 298



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
 Frame = +2

Query: 29  KAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MENTIVCPDTT 202
           KA     +  +++SM+  G  P +++++VL+D  CK      A  +   M +    P+  
Sbjct: 270 KADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV 329

Query: 203 SYNILIYA---SLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYALFVL 373
           ++N +I     S R GE F   Q+ + ++N+ + PD +T+  LI G CKAG    A  + 
Sbjct: 330 TFNSIIDGLCKSDRSGEAF---QIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALF 386

Query: 374 DEAWKNGFNPGTFAYNIILYAMFRRGKL---RDIIFLLKHMIVNSCKPDVYTYDI 529
           +E       P    +  ++  + + G++   RDI+ L+ ++ V    P+V TY++
Sbjct: 387 EEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGV---PPNVVTYNV 438



 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPN--PTIVSFNVLLDGLCKKGYFGIAYRIFME--- 175
           L+    K G   ++ +L+  M     +  P I+++N  LDGLCK+     A  +      
Sbjct: 157 LINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRD 216

Query: 176 -NTIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKI 352
            +  V PDT +++ LI    + G+    E    DM      P+V+TY +L+ GLCKA K+
Sbjct: 217 GSLRVSPDTVTFSTLIDGLCKCGQ--TDEACNDDMIAGGYVPNVVTYNALVNGLCKADKM 274

Query: 353 SYALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYD 526
             A  +++     G  P    Y++++ A  +  ++ + + LL  M    C P+V T++
Sbjct: 275 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN 332



 Score = 70.5 bits (171), Expect = 5e-10
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 7/178 (3%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLL-DSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFME--NT 181
           +LQ   +AG  + + ++    M  +G  PTIV++N +++GLCK    G    +F E    
Sbjct: 51  VLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKR 110

Query: 182 IVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYA 361
              PD  +YN LI +  + G+     +L   M ++   P+V+TY  LI GLCK G+I  A
Sbjct: 111 GHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEA 170

Query: 362 LFVLDEAWKNGFN--PGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCK--PDVYTY 523
             ++ E  +   +  P    YN  L  + ++    +   L++ +   S +  PD  T+
Sbjct: 171 RELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 228



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
 Frame = +2

Query: 95  TIVSFNVLLDGLCKKGYFGIAYRIF---MENTIVCPDTTSYNILIYASLREGEHFLVEQL 265
           ++  +N++L  LC+ G    A  IF   M    V P   +YN +I    +  E     +L
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 103

Query: 266 IIDMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEAWKNGFNPGTFAYNIILYAMFR 445
             ++  +  +PDV+TY +LI  LCKAG +  A  +       G  P    Y++++  + +
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCK 163

Query: 446 RGKLRDIIFLLKHMIVNSCK--PDVYTYD 526
            G++ +   L++ M   SC   P++ TY+
Sbjct: 164 VGRIDEARELIQEMTRKSCDVLPNIITYN 192



 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 2/169 (1%)
 Frame = +2

Query: 29  KAGMHSDSFQLLDSMISNG--PNPTIVSFNVLLDGLCKKGYFGIAYRIFMENTIVCPDTT 202
           K  M +++ +L+ S+       +P  V+F+ L+DGLCK G    A    M      P+  
Sbjct: 200 KQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVV 259

Query: 203 SYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEA 382
           +YN L+    +  +      +I  M +K + PDVITY  L+   CKA ++  AL +L   
Sbjct: 260 TYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 319

Query: 383 WKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDI 529
              G  P    +N I+  + +  +  +   +   +      PD  T++I
Sbjct: 320 ASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNI 368



 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
 Frame = +2

Query: 206 YNILIYASLREGEHFLVEQLII-DMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEA 382
           YNI++ +  R GE     ++   +M    + P ++TY ++I GLCK+ ++   + + +E 
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 383 WKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDI 529
            K G +P    YN ++ ++ + G L +   L   M    C P+V TY +
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSV 156


>ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547335|gb|EEF48830.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 567

 Score =  107 bits (266), Expect = 5e-21
 Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 2/174 (1%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MENTI 184
           LL+  +K    +++ +LLD +I+ G  P +VS+NVLL GLCK+G    A R+F  + +  
Sbjct: 208 LLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKG 267

Query: 185 VCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYAL 364
             P+  SYNIL+ +   EG      +L+ +M+ +  +P ++TY  LI  L   GKI  AL
Sbjct: 268 FSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQAL 327

Query: 365 FVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYD 526
            V+DE     F P   +YN I+  + + GK+  ++  L  MI   C P+  T++
Sbjct: 328 QVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFN 381



 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 3/165 (1%)
 Frame = +2

Query: 44  SDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFMENTIVC---PDTTSYNI 214
           SD+F  L+ ++ NG  P +V    LL  LCK      A R+ ME  I C   PD  SY  
Sbjct: 79  SDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRV-MEMMISCGIIPDAASYTF 137

Query: 215 LIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEAWKNG 394
           L+    + G      QL+  M +     + +TY +L+ GLC  G ++ +L  LD   + G
Sbjct: 138 LVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKG 197

Query: 395 FNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDI 529
             P  F Y+ +L A ++   + + + LL  +I    +P++ +Y++
Sbjct: 198 LVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNV 242



 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
 Frame = +2

Query: 2   STCLLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--ME 175
           +T LL    K+     + ++++ MIS G  P   S+  L++ LCK+G  G A ++   ME
Sbjct: 100 ATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKME 159

Query: 176 NTIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKIS 355
           ++    +T +YN L+      G      Q +  +  K + P+  TY SL+    K   ++
Sbjct: 160 DSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVN 219

Query: 356 YALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDI 529
            A+ +LDE    G  P   +YN++L  + + G++ + I L K++      P+V +Y+I
Sbjct: 220 EAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNI 277



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 3/178 (1%)
 Frame = +2

Query: 5   TCLLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF---ME 175
           T L+ +  K G    + QL++ M  +G     V++N L+ GLC  G    + +     M+
Sbjct: 136 TFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQ 195

Query: 176 NTIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKIS 355
             +V P+  +Y+ L+ A+ +E       +L+ ++  K   P++++Y  L+ GLCK G+I 
Sbjct: 196 KGLV-PNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIE 254

Query: 356 YALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDI 529
            A+ +       GF+P   +YNI+L ++   G+  +   LL  M      P + TY+I
Sbjct: 255 EAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNI 312


>ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355494941|gb|AES76144.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  103 bits (258), Expect = 4e-20
 Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
 Frame = +2

Query: 11  LLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFME--NTI 184
           L+    KAG  S +++++ +M  +G  P IV+  +LLDGLCK      A  +F +   + 
Sbjct: 366 LIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESG 425

Query: 185 VCPDTTSYNILIYA---SLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKIS 355
           + PD  SY ILI+    S R GE      L+ DMH K++ P ++TY  LI GLC++G+IS
Sbjct: 426 LTPDVWSYTILIHGCCTSRRMGEAM---NLLRDMHLKNLVPHIVTYSCLIDGLCRSGRIS 482

Query: 356 YALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDI 529
            A  +L+E    G  P T  Y+I+L A++++  L + +FL   MI    +PDV  Y I
Sbjct: 483 NAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTI 540



 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 14/287 (4%)
 Frame = +2

Query: 5    TCLLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIF--MEN 178
            T L+    K GM  ++ ++ D M++ G  P IV+   L+ G C KG   +A  +F  +  
Sbjct: 259  TVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGE 318

Query: 179  TIVCPDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISY 358
                 D  +YN+ I+   + G      ++  +M  + + P+++TY SLI  LCKAG++S 
Sbjct: 319  WGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSG 378

Query: 359  ALFVLDEAWKNGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYDIWSK 538
            A  ++    ++G  P      I+L  + +  +L   I L   ++ +   PDV++Y I   
Sbjct: 379  AWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIH 438

Query: 539  AKLSGRMKIIPGFEKTLEFLSWHK*HFSRENLKMKRNLNMFQAVK-------FCNGMIRS 697
               + R                       E + + R++++   V          +G+ RS
Sbjct: 439  GCCTSRR--------------------MGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRS 478

Query: 698  KRLS-----VNNMFVPGNRYQACVTIFLLNCCFKKKIINSYRVFFYN 823
             R+S     +N M V G          LL+  +KK+ ++   VF +N
Sbjct: 479  GRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDE-AVFLFN 524



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 42/185 (22%), Positives = 83/185 (44%), Gaps = 7/185 (3%)
 Frame = +2

Query: 35  GMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFMENTIVCPDTTSY-- 208
           G   + F+  + M+ NG  P   ++  L+ GLC  G F   + +  E      D + Y  
Sbjct: 199 GFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVF 258

Query: 209 NILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEAWK 388
            +LI    + G      ++  +M N+   P+++T  +L+ G C  G +  A  + D   +
Sbjct: 259 TVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGE 318

Query: 389 NGFNPGTFAYNIILYAMFRRGKLRDIIFLLKHMIVNSCKPDVYTYD-----IWSKAKLSG 553
            GF    + YN+ ++   + G++RD + +   M      P++ TY+     +    ++SG
Sbjct: 319 WGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSG 378

Query: 554 RMKII 568
             +I+
Sbjct: 379 AWEIV 383



 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
 Frame = +2

Query: 47  DSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFMENTIV--CPDTTSYNILI 220
           ++  LL  M      P IV+++ L+DGLC+ G    A+R+  E  +    PDT +Y+IL+
Sbjct: 448 EAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILL 507

Query: 221 YASLREGEH-----FLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKISYALFVLDEAW 385
            A L + +H     FL  Q+I     + + PDV+ Y  +I G CK+ +I  A+ +  E  
Sbjct: 508 DA-LWKKQHLDEAVFLFNQMI----KRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMH 562

Query: 386 KNGFNPGTFAYNIILYAMFRRG 451
                P    Y I+  A+F+ G
Sbjct: 563 MKNLVPDIVTYTILFNAVFKSG 584



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
 Frame = +2

Query: 5   TCLLQYFFKAGMHSDSFQLLDSMISNGPNPTIVSFNVLLDGLCKKGYFGIAYRIFMENTI 184
           +CL+    ++G  S++++LL+ M   GP P  +++++LLD L KK +   A  +F+ N +
Sbjct: 469 SCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEA--VFLFNQM 526

Query: 185 VC----PDTTSYNILIYASLREGEHFLVEQLIIDMHNKHINPDVITYRSLICGLCKAGKI 352
           +     PD   Y I+I    +         L  +MH K++ PD++TY  L   + K+G  
Sbjct: 527 IKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSN 586

Query: 353 SY 358
           SY
Sbjct: 587 SY 588