BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00021489
         (1278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containi...   613   e-173
ref|XP_002528404.1| pentatricopeptide repeat-containing protein,...   595   e-168
ref|XP_002307852.1| predicted protein [Populus trichocarpa] gi|2...   568   e-159
ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containi...   562   e-158
ref|XP_002869359.1| pentatricopeptide repeat-containing protein ...   553   e-155

>ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
            chloroplastic-like [Vitis vinifera]
            gi|297745081|emb|CBI38673.3| unnamed protein product
            [Vitis vinifera]
          Length = 900

 Score =  613 bits (1581), Expect = e-173
 Identities = 296/426 (69%), Positives = 360/426 (84%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            V+NTLIYAC K+G V LGTKWF LMLENGV+PNVATFGM++SLYQKG NV ++E+AF QM
Sbjct: 210  VYNTLIYACYKQGHVELGTKWFRLMLENGVRPNVATFGMVMSLYQKGWNVADSEYAFSQM 269

Query: 1098 RSFRVRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLE 919
            RSF + CQSAYSAMITIYTR+ L+DKAEE+I F+++D VI N ENWLV +NAYSQQGKL+
Sbjct: 270  RSFGITCQSAYSAMITIYTRMSLYDKAEEVIDFIQEDKVILNLENWLVLLNAYSQQGKLQ 329

Query: 918  EAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMV 739
            EAERVL SM  AG  PNIVAYN LITGYGK S+MD+AQ IF  L ++GLEPDE+TYRSM+
Sbjct: 330  EAERVLFSMQNAGFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNVGLEPDESTYRSMI 389

Query: 738  EGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIGCQ 559
            EGWGRA +Y  A+W+Y ELK+ GF+PNSSN++TM+NL A+  D +    TL+DM+RIGCQ
Sbjct: 390  EGWGRAENYKEAEWYYNELKRLGFKPNSSNLYTMINLQAKYADGEDAARTLDDMKRIGCQ 449

Query: 558  YSSILTILLQAYEKVERLDKVPLVVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALRVL 379
            YSS+L  LLQAYE+  R+D+VPL++KG FYE++LVNQTSCSILV+AYVK+ LVDDA++VL
Sbjct: 450  YSSVLGTLLQAYERAGRIDRVPLILKGSFYEYVLVNQTSCSILVMAYVKHCLVDDAIKVL 509

Query: 378  QEKHWKDLIFEDNLYHLLICSCKELGFHEEAIKIFIHMPKSDANPNLHIACTMIDIYGNI 199
            QEK WKD IFEDNLYHL+ICSCKELG  E A+KI+  MP  +  PNLHI CTMIDIY  +
Sbjct: 510  QEKQWKDTIFEDNLYHLVICSCKELGRLENAVKIYSQMP--NKKPNLHIMCTMIDIYSTL 567

Query: 198  GRFTEAEDLYHKLKSSGIKLDMVAYSIVVRMYVKAGSLEDACLVLDTMDKQNDIIPDTFL 19
            GRF++AE+LY KLKSS I LDM+A+SIVVRMYVK+GSL+DAC VL+TMD+Q +I+PD +L
Sbjct: 568  GRFSDAENLYLKLKSSEISLDMIAFSIVVRMYVKSGSLKDACSVLETMDEQKNIVPDIYL 627

Query: 18   FRDMLR 1
            F DMLR
Sbjct: 628  FCDMLR 633



 Score = 92.4 bits (228), Expect = 2e-16
 Identities = 80/357 (22%), Positives = 162/357 (45%), Gaps = 2/357 (0%)
 Frame = -1

Query: 1068 YSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLEEAERVLISML 889
            Y  +I     LG  + A +I   M +    PN       I+ YS  G+  +AE + + + 
Sbjct: 524  YHLVICSCKELGRLENAVKIYSQMPNKK--PNLHIMCTMIDIYSTLGRFSDAENLYLKLK 581

Query: 888  EAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSI-GLEPDETTYRSMVEGWGRAYHY 712
             + +  +++A++ ++  Y K   +  A  + E +     + PD   +  M+  + +    
Sbjct: 582  SSEISLDMIAFSIVVRMYVKSGSLKDACSVLETMDEQKNIVPDIYLFCDMLRIYQQCGML 641

Query: 711  DNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIGCQYSSI-LTIL 535
            D  +  Y  + K+G   +S     ++N CAR    D      ++M   G   ++I L ++
Sbjct: 642  DKLQDLYYRILKTGVTWDSEMYNCVINCCARALPVDELSRLFDEMLLHGFAPNTITLNVM 701

Query: 534  LQAYEKVERLDKVPLVVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALRVLQEKHWKDL 355
            L  Y K  RL K    V     +  LV+  S + ++ AY +++ +   L  +++  +   
Sbjct: 702  LDVYGK-SRLFKKARKVLWLARKRGLVDVISYNTIIAAYGQSKDLKKMLSTVRQMQFNGF 760

Query: 354  IFEDNLYHLLICSCKELGFHEEAIKIFIHMPKSDANPNLHIACTMIDIYGNIGRFTEAED 175
                 +Y+ ++ S  + G  E    +   M +S    + +    MI+IYG  G   E  +
Sbjct: 761  SVSLEVYNCMLDSYGKEGQIESFRSVLRRMKESSCASDHYTYNIMINIYGEQGWIEEVAN 820

Query: 174  LYHKLKSSGIKLDMVAYSIVVRMYVKAGSLEDACLVLDTMDKQNDIIPDTFLFRDML 4
            +  +LK SG+  D+ +Y+ +++ Y  AG +EDA +++  M ++N I PD   + +++
Sbjct: 821  VLTELKESGLGPDLCSYNTLIKAYGIAGMVEDAVVLVKEM-RENGIQPDRITYINLI 876



 Score = 75.5 bits (184), Expect = 3e-11
 Identities = 49/223 (21%), Positives = 105/223 (47%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            ++N +I  C++   V   ++ F  ML +G  PN  T  ++L +Y K    ++A       
Sbjct: 662  MYNCVINCCARALPVDELSRLFDEMLLHGFAPNTITLNVMLDVYGKSRLFKKARKVLWLA 721

Query: 1098 RSFRVRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLE 919
            R   +    +Y+ +I  Y +     K    +  M+ +    + E +   +++Y ++G++E
Sbjct: 722  RKRGLVDVISYNTIIAAYGQSKDLKKMLSTVRQMQFNGFSVSLEVYNCMLDSYGKEGQIE 781

Query: 918  EAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMV 739
                VL  M E+    +   YN +I  YG+   ++    +  +L   GL PD  +Y +++
Sbjct: 782  SFRSVLRRMKESSCASDHYTYNIMINIYGEQGWIEEVANVLTELKESGLGPDLCSYNTLI 841

Query: 738  EGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKD 610
            + +G A   ++A    +E++++G QP+      ++N   +N +
Sbjct: 842  KAYGIAGMVEDAVVLVKEMRENGIQPDRITYINLINALRKNDE 884


>ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532192|gb|EEF33997.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 955

 Score =  595 bits (1534), Expect = e-168
 Identities = 289/426 (67%), Positives = 353/426 (82%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            VFNTLIYACS+RG + LG KWF +MLE GVQPN+ATFGML+ LYQKG NVEEAEF F +M
Sbjct: 263  VFNTLIYACSRRGNMLLGGKWFRMMLELGVQPNIATFGMLMGLYQKGWNVEEAEFVFSKM 322

Query: 1098 RSFRVRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLE 919
            RSF + CQSAYSAMITIYTRL L++KAEEIIG M +D V  N ENWLV +NAYSQQG+LE
Sbjct: 323  RSFGIICQSAYSAMITIYTRLSLYNKAEEIIGLMGEDKVAMNVENWLVLLNAYSQQGRLE 382

Query: 918  EAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMV 739
            EAE+VL+ M EA   PNIVA+NTLITGYGK+S+M +AQR+F  + + GLEPDETTYRSM+
Sbjct: 383  EAEQVLVEMQEASFSPNIVAFNTLITGYGKLSNMAAAQRLFLDIQNAGLEPDETTYRSMI 442

Query: 738  EGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIGCQ 559
            EGWGR  +Y  A+W+Y+ELK+ G+ PNSSN++T++NL A++ D++    TL+DM +IGCQ
Sbjct: 443  EGWGRTGNYKEAEWYYKELKRLGYMPNSSNLYTLINLQAKHDDDEGAIGTLDDMLKIGCQ 502

Query: 558  YSSILTILLQAYEKVERLDKVPLVVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALRVL 379
            +SSIL  LL+AYEK  R++KVPL++K  FY+H+LVNQTSCSILV+ YVKN LVD+AL+VL
Sbjct: 503  HSSILGTLLKAYEKAGRINKVPLLLKDSFYQHVLVNQTSCSILVMTYVKNCLVDEALKVL 562

Query: 378  QEKHWKDLIFEDNLYHLLICSCKELGFHEEAIKIFIHMPKSDANPNLHIACTMIDIYGNI 199
             +K WKD  FEDNLYHLLICSCKELG  E A++I+  MPKS+  PNLHI+CT+IDIY  +
Sbjct: 563  GDKKWKDQTFEDNLYHLLICSCKELGNLESAVRIYTQMPKSEDKPNLHISCTVIDIYSVL 622

Query: 198  GRFTEAEDLYHKLKSSGIKLDMVAYSIVVRMYVKAGSLEDACLVLDTMDKQNDIIPDTFL 19
            G F EAE LY +LK SGI LDMVA+SIVVRMYVKAGSL+DAC VL TM+KQ +IIPD +L
Sbjct: 623  GCFAEAEKLYQQLKCSGIALDMVAFSIVVRMYVKAGSLKDACSVLATMEKQENIIPDIYL 682

Query: 18   FRDMLR 1
            +RDMLR
Sbjct: 683  YRDMLR 688



 Score = 87.4 bits (215), Expect = 7e-15
 Identities = 74/355 (20%), Positives = 155/355 (43%), Gaps = 2/355 (0%)
 Frame = -1

Query: 1170 FGMLLSLYQKGGNVEEAEFAFCQMRSFRVRCQSAYSA-MITIYTRLGLFDKAEEIIGFMK 994
            + +L+   ++ GN+E A   + QM     +     S  +I IY+ LG F +AE++   +K
Sbjct: 577  YHLLICSCKELGNLESAVRIYTQMPKSEDKPNLHISCTVIDIYSVLGCFAEAEKLYQQLK 636

Query: 993  DDHVIPNSENWLVRINAYSQQGKLEEAERVLISM-LEAGVPPNIVAYNTLITGYGKVSDM 817
               +  +   + + +  Y + G L++A  VL +M  +  + P+I  Y  ++  Y +   M
Sbjct: 637  CSGIALDMVAFSIVVRMYVKAGSLKDACSVLATMEKQENIIPDIYLYRDMLRIYQQCGMM 696

Query: 816  DSAQRIFEKLPSIGLEPDETTYRSMVEGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTM 637
               + ++ K+    ++ D+  Y  ++    RA         + E+ + GF PN+     M
Sbjct: 697  SKLKDLYHKILKSEVDWDQELYNCIINCCARALPVGELSRLFSEMLQRGFSPNTITFNVM 756

Query: 636  LNLCARNKDEDSTFETLEDMRRIGCQYSSILTILLQAYEKVERLDKVPLVVKGHFYEHIL 457
            L++  + K  +   E     R+ G         ++ AY   +    +   V+   ++   
Sbjct: 757  LDVYGKAKLFNKAKELFWMARKRGLVDVISYNTVIAAYGHNKDFKNMASAVRNMQFDGFS 816

Query: 456  VNQTSCSILVIAYVKNRLVDDALRVLQEKHWKDLIFEDNLYHLLICSCKELGFHEEAIKI 277
            V+  + + ++  Y K   ++    VLQ         +   Y+++I    E G+ +E   +
Sbjct: 817  VSLEAYNCMLDGYGKEGQMECFRNVLQRMKQSSYTSDHYTYNIMINIYGEQGWIDEVAGV 876

Query: 276  FIHMPKSDANPNLHIACTMIDIYGNIGRFTEAEDLYHKLKSSGIKLDMVAYSIVV 112
               + +    P+L    T+I  YG  G   +A DL  +++ +GI+ D + YS ++
Sbjct: 877  LTELRECGLRPDLCSYNTLIKAYGVAGMVEDAIDLVKEMRENGIEPDKITYSNLI 931



 Score = 80.5 bits (197), Expect = 9e-13
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            ++N +I  C++   V   ++ F  ML+ G  PN  TF ++L +Y K     +A+  F   
Sbjct: 717  LYNCIINCCARALPVGELSRLFSEMLQRGFSPNTITFNVMLDVYGKAKLFNKAKELFWMA 776

Query: 1098 RSFRVRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLE 919
            R   +    +Y+ +I  Y     F      +  M+ D    + E +   ++ Y ++G++E
Sbjct: 777  RKRGLVDVISYNTVIAAYGHNKDFKNMASAVRNMQFDGFSVSLEAYNCMLDGYGKEGQME 836

Query: 918  EAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMV 739
                VL  M ++    +   YN +I  YG+   +D    +  +L   GL PD  +Y +++
Sbjct: 837  CFRNVLQRMKQSSYTSDHYTYNIMINIYGEQGWIDEVAGVLTELRECGLRPDLCSYNTLI 896

Query: 738  EGWGRAYHYDNAKWFYQELKKSGFQPNS---SNIFTML 634
            + +G A   ++A    +E++++G +P+    SN+ T L
Sbjct: 897  KAYGVAGMVEDAIDLVKEMRENGIEPDKITYSNLITAL 934



 Score = 65.5 bits (158), Expect = 3e-08
 Identities = 68/335 (20%), Positives = 145/335 (43%), Gaps = 5/335 (1%)
 Frame = -1

Query: 1269 TLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQMRSF 1090
            T+I   S  G      K +  +  +G+  ++  F +++ +Y K G++++A      M   
Sbjct: 614  TVIDIYSVLGCFAEAEKLYQQLKCSGIALDMVAFSIVVRMYVKAGSLKDACSVLATMEKQ 673

Query: 1089 R--VRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLEE 916
               +     Y  M+ IY + G+  K +++   +    V  + E +   IN  ++   + E
Sbjct: 674  ENIIPDIYLYRDMLRIYQQCGMMSKLKDLYHKILKSEVDWDQELYNCIINCCARALPVGE 733

Query: 915  AERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMVE 736
              R+   ML+ G  PN + +N ++  YGK    + A+ +F      GL  D  +Y +++ 
Sbjct: 734  LSRLFSEMLQRGFSPNTITFNVMLDVYGKAKLFNKAKELFWMARKRGL-VDVISYNTVIA 792

Query: 735  GWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIGCQY 556
             +G    + N     + ++  GF  +      ML+   +    +     L+ M++    Y
Sbjct: 793  AYGHNKDFKNMASAVRNMQFDGFSVSLEAYNCMLDGYGKEGQMECFRNVLQRMKQ--SSY 850

Query: 555  SS---ILTILLQAYEKVERLDKVPLVVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALR 385
            +S      I++  Y +   +D+V  V+       +  +  S + L+ AY    +V+DA+ 
Sbjct: 851  TSDHYTYNIMINIYGEQGWIDEVAGVLTELRECGLRPDLCSYNTLIKAYGVAGMVEDAID 910

Query: 384  VLQEKHWKDLIFEDNLYHLLICSCKELGFHEEAIK 280
            +++E     +  +   Y  LI + ++   + EA+K
Sbjct: 911  LVKEMRENGIEPDKITYSNLITALQKNDKYLEAVK 945


>ref|XP_002307852.1| predicted protein [Populus trichocarpa] gi|222853828|gb|EEE91375.1|
            predicted protein [Populus trichocarpa]
          Length = 670

 Score =  568 bits (1464), Expect = e-159
 Identities = 270/403 (66%), Positives = 336/403 (83%)
 Frame = -1

Query: 1209 LMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQMRSFRVRCQSAYSAMITIYTRLGL 1030
            +MLE GVQPNVATFGM++ LYQKG NVEEAEF+F QMRSF + CQSAYSAMITIYTRL L
Sbjct: 1    MMLELGVQPNVATFGMVMGLYQKGWNVEEAEFSFAQMRSFGIICQSAYSAMITIYTRLSL 60

Query: 1029 FDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLEEAERVLISMLEAGVPPNIVAYNT 850
            +DKAEE+IG M+DD V+ N ENWLV +NAYSQQGKLE+AE++L++M EA   P IVAYN 
Sbjct: 61   YDKAEEVIGLMRDDKVVLNLENWLVLLNAYSQQGKLEKAEQLLVAMQEAKFSPTIVAYNI 120

Query: 849  LITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMVEGWGRAYHYDNAKWFYQELKKSG 670
            LITGYGK S+M +AQR+F  + + GLEPD+TTYRSM+EGWGR  +Y  A+W+Y+ELK+ G
Sbjct: 121  LITGYGKASNMVAAQRLFSGIQNAGLEPDDTTYRSMIEGWGRVGNYKEAEWYYKELKRLG 180

Query: 669  FQPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIGCQYSSILTILLQAYEKVERLDKVPL 490
            F+PNS N++T++NL A + DE+    TL+DM +IGCQYSSIL  LL+AYEKV R+DK+P 
Sbjct: 181  FKPNSPNLYTLINLQAEHGDEEGACRTLDDMLKIGCQYSSILGTLLKAYEKVGRIDKIPF 240

Query: 489  VVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALRVLQEKHWKDLIFEDNLYHLLICSCK 310
            ++KG FY+H+ VNQ SCSILVIAYVKN LVD+A+++L +K W D +FEDNLYHLLICSCK
Sbjct: 241  LLKGSFYQHVTVNQNSCSILVIAYVKNLLVDEAIKLLGDKKWNDPVFEDNLYHLLICSCK 300

Query: 309  ELGFHEEAIKIFIHMPKSDANPNLHIACTMIDIYGNIGRFTEAEDLYHKLKSSGIKLDMV 130
            ELG  + A+KI+  MPKSD  PNLHI+CTMIDIY  +G+F E E LY KLKSSGI LD++
Sbjct: 301  ELGHLDSAVKIYSLMPKSDDRPNLHISCTMIDIYTTMGQFNEGEKLYMKLKSSGIGLDVI 360

Query: 129  AYSIVVRMYVKAGSLEDACLVLDTMDKQNDIIPDTFLFRDMLR 1
            A+SIV+RMYVKAGSL+DAC VL+TM+K+ D++PD +LFRDMLR
Sbjct: 361  AFSIVIRMYVKAGSLKDACSVLETMEKEKDMVPDIYLFRDMLR 403



 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 67/317 (21%), Positives = 140/317 (44%), Gaps = 1/317 (0%)
 Frame = -1

Query: 1059 MITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLEEAERVLISM-LEA 883
            MI IYT +G F++ E++   +K   +  +   + + I  Y + G L++A  VL +M  E 
Sbjct: 330  MIDIYTTMGQFNEGEKLYMKLKSSGIGLDVIAFSIVIRMYVKAGSLKDACSVLETMEKEK 389

Query: 882  GVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMVEGWGRAYHYDNA 703
             + P+I  +  ++  Y +   MD    ++ K+   G+  D+  Y  ++    RA      
Sbjct: 390  DMVPDIYLFRDMLRVYQQCGMMDKLNDLYFKILKSGVVWDQELYNCLINCCARALPVGEL 449

Query: 702  KWFYQELKKSGFQPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIGCQYSSILTILLQAY 523
               + E+ + GF PN+     ML++ A+ K  +   E     R+ G         ++ AY
Sbjct: 450  SRLFNEMLQRGFDPNTITFNVMLDVYAKAKLFNKARELFMMARKRGLVDVISYNTIIAAY 509

Query: 522  EKVERLDKVPLVVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALRVLQEKHWKDLIFED 343
             +      +   +    ++   V+  + + ++ AY K   ++    VLQ         + 
Sbjct: 510  GRKRDFKNMASTIHTMQFDGFSVSLEAYNCVLDAYGKEGQMESFRSVLQRMKNSSCTADH 569

Query: 342  NLYHLLICSCKELGFHEEAIKIFIHMPKSDANPNLHIACTMIDIYGNIGRFTEAEDLYHK 163
              Y++++    ELG+ +E   +   + +    P+L    T+I  YG  G   +A  L  +
Sbjct: 570  YTYNIMMNIYGELGWIDEVAGVLTELRECGLGPDLCSYNTLIKAYGIAGMVEDAVGLVKE 629

Query: 162  LKSSGIKLDMVAYSIVV 112
            ++ +G++ D + Y+ ++
Sbjct: 630  MRQNGVEPDKITYTNLI 646



 Score = 84.7 bits (208), Expect = 5e-14
 Identities = 57/232 (24%), Positives = 108/232 (46%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            ++N LI  C++   V   ++ F  ML+ G  PN  TF ++L +Y K     +A   F   
Sbjct: 432  LYNCLINCCARALPVGELSRLFNEMLQRGFDPNTITFNVMLDVYAKAKLFNKARELFMMA 491

Query: 1098 RSFRVRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLE 919
            R   +    +Y+ +I  Y R   F      I  M+ D    + E +   ++AY ++G++E
Sbjct: 492  RKRGLVDVISYNTIIAAYGRKRDFKNMASTIHTMQFDGFSVSLEAYNCVLDAYGKEGQME 551

Query: 918  EAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMV 739
                VL  M  +    +   YN ++  YG++  +D    +  +L   GL PD  +Y +++
Sbjct: 552  SFRSVLQRMKNSSCTADHYTYNIMMNIYGELGWIDEVAGVLTELRECGLGPDLCSYNTLI 611

Query: 738  EGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKDEDSTFETLE 583
            + +G A   ++A    +E++++G +P+     T  NL    +  D   E ++
Sbjct: 612  KAYGIAGMVEDAVGLVKEMRQNGVEPDK---ITYTNLITTLQKNDKYLEAVK 660



 Score = 64.3 bits (155), Expect = 6e-08
 Identities = 99/493 (20%), Positives = 183/493 (37%), Gaps = 72/493 (14%)
 Frame = -1

Query: 1266 LIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQMRSFR 1087
            L+ A S++G +    +    M E    P +  + +L++ Y K  N+  A+  F  +++  
Sbjct: 86   LLNAYSQQGKLEKAEQLLVAMQEAKFSPTIVAYNILITGYGKASNMVAAQRLFSGIQNAG 145

Query: 1086 VRCQ-SAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLEEAE 910
            +    + Y +MI  + R+G + +AE     +K     PNS N    IN  ++ G  E A 
Sbjct: 146  LEPDDTTYRSMIEGWGRVGNYKEAEWYYKELKRLGFKPNSPNLYTLINLQAEHGDEEGAC 205

Query: 909  RVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIF---------------------- 796
            R L  ML+ G   + +   TL+  Y KV  +D    +                       
Sbjct: 206  RTLDDMLKIGCQYSSIL-GTLLKAYEKVGRIDKIPFLLKGSFYQHVTVNQNSCSILVIAY 264

Query: 795  -------EKLPSIGLEP------DETTYRSMVEGWGRAYHYDNAKWFYQELKKSGFQPNS 655
                   E +  +G +       ++  Y  ++       H D+A   Y  + KS  +PN 
Sbjct: 265  VKNLLVDEAIKLLGDKKWNDPVFEDNLYHLLICSCKELGHLDSAVKIYSLMPKSDDRPNL 324

Query: 654  SNIFTMLNLCARNKDEDSTFETLEDMRRIGCQYSSI-LTILLQAYEKVERLDKVPLVVKG 478
                TM+++       +   +    ++  G     I  +I+++ Y K   L     V++ 
Sbjct: 325  HISCTMIDIYTTMGQFNEGEKLYMKLKSSGIGLDVIAFSIVIRMYVKAGSLKDACSVLET 384

Query: 477  HFYEHILVNQTSCSILVIAYVKNRLVDDALRVLQEKHWKD-LIFEDNLYHLLICSCKELG 301
               E  +V        ++   +   + D L  L  K  K  ++++  LY+ LI  C    
Sbjct: 385  MEKEKDMVPDIYLFRDMLRVYQQCGMMDKLNDLYFKILKSGVVWDQELYNCLINCCARAL 444

Query: 300  FHEEAIKIFIHMPKSDANPNLHIACTMIDIYGNIGRFTEAEDLY---------------- 169
               E  ++F  M +   +PN      M+D+Y     F +A +L+                
Sbjct: 445  PVGELSRLFNEMLQRGFDPNTITFNVMLDVYAKAKLFNKARELFMMARKRGLVDVISYNT 504

Query: 168  ------------------HKLKSSGIKLDMVAYSIVVRMYVKAGSLEDACLVLDTMDKQN 43
                              H ++  G  + + AY+ V+  Y K G +E    VL  M K +
Sbjct: 505  IIAAYGRKRDFKNMASTIHTMQFDGFSVSLEAYNCVLDAYGKEGQMESFRSVLQRM-KNS 563

Query: 42   DIIPDTFLFRDML 4
                D + +  M+
Sbjct: 564  SCTADHYTYNIMM 576


>ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
            chloroplastic-like [Cucumis sativus]
          Length = 894

 Score =  562 bits (1449), Expect = e-158
 Identities = 272/426 (63%), Positives = 342/426 (80%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            VFNTLIYAC K   V  GTKWF +MLE  VQPNVATFGML+ LYQK  +++E+EFAF QM
Sbjct: 202  VFNTLIYACYKSRFVEQGTKWFRMMLECQVQPNVATFGMLMGLYQKKCDIKESEFAFNQM 261

Query: 1098 RSFRVRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLE 919
            R+F + C++AY++MITIY R+ L+DKAEE+I  M++D VIPN ENW+V +NAY QQGK+E
Sbjct: 262  RNFGIVCETAYASMITIYIRMNLYDKAEEVIQLMQEDKVIPNLENWVVMLNAYCQQGKME 321

Query: 918  EAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMV 739
            EAE V  SM EAG   NI+AYNTLITGYGK S+MD+AQR+F  + + G+EPDETTYRSM+
Sbjct: 322  EAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMI 381

Query: 738  EGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIGCQ 559
            EGWGRA +Y  A+W+Y+ELK+ G+ PNSSN+FT++NL A+++DE  T +TL DM +IGC+
Sbjct: 382  EGWGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLINLQAKHEDEAGTLKTLNDMLKIGCR 441

Query: 558  YSSILTILLQAYEKVERLDKVPLVVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALRVL 379
             SSI+  +LQAYEK  R+  VP+++ G FY  +L +QTSCSILV+AYVK+ LVDDAL+VL
Sbjct: 442  PSSIVGNVLQAYEKARRMKSVPVLLTGSFYRKVLSSQTSCSILVMAYVKHCLVDDALKVL 501

Query: 378  QEKHWKDLIFEDNLYHLLICSCKELGFHEEAIKIFIHMPKSDANPNLHIACTMIDIYGNI 199
            +EK WKD  FE+NLYHLLICSCKELG  E AIKI+  +PK +  PNLHI CTMIDIY  +
Sbjct: 502  REKEWKDHHFEENLYHLLICSCKELGHLENAIKIYTQLPKRENKPNLHITCTMIDIYSIM 561

Query: 198  GRFTEAEDLYHKLKSSGIKLDMVAYSIVVRMYVKAGSLEDACLVLDTMDKQNDIIPDTFL 19
            GRF++ E LY  L+SSGI LD++AY++VVRMYVKAGSLEDAC VLD M +Q DI+PD +L
Sbjct: 562  GRFSDGEKLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVLDLMAEQQDIVPDIYL 621

Query: 18   FRDMLR 1
             RDMLR
Sbjct: 622  LRDMLR 627



 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 74/392 (18%), Positives = 169/392 (43%), Gaps = 2/392 (0%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            +++ LI +C + G +    K +  + +   +PN+     ++ +Y   G   + E  +  +
Sbjct: 515  LYHLLICSCKELGHLENAIKIYTQLPKRENKPNLHITCTMIDIYSIMGRFSDGEKLYLSL 574

Query: 1098 RSFRVRCQS-AYSAMITIYTRLGLFDKAEEIIGFMKDDH-VIPNSENWLVRINAYSQQGK 925
            RS  +     AY+ ++ +Y + G  + A  ++  M +   ++P+       +  Y + G 
Sbjct: 575  RSSGIPLDLIAYNVVVRMYVKAGSLEDACSVLDLMAEQQDIVPDIYLLRDMLRIYQRCGM 634

Query: 924  LEEAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRS 745
            + +   +   +L++GV  +   YN +I    +   +D   R+F+++   G  P+  T   
Sbjct: 635  VHKLADLYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNV 694

Query: 744  MVEGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIG 565
            M++ +G++  +  A+  +   +K G   ++ +  TM+++  +NKD  +   T++ M+  G
Sbjct: 695  MLDVYGKSKLFTKARNLFGLAQKRGLV-DAISYNTMISVYGKNKDFKNMSSTVQKMKFNG 753

Query: 564  CQYSSILTILLQAYEKVERLDKVPLVVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALR 385
                   ++ L+AY                            + ++ AY K   +++   
Sbjct: 754  ------FSVSLEAY----------------------------NCMLDAYGKECQMENFRS 779

Query: 384  VLQEKHWKDLIFEDNLYHLLICSCKELGFHEEAIKIFIHMPKSDANPNLHIACTMIDIYG 205
            VLQ         +   Y+++I    E G+ +E  ++   +      P+L+   T+I  YG
Sbjct: 780  VLQRMQETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYG 839

Query: 204  NIGRFTEAEDLYHKLKSSGIKLDMVAYSIVVR 109
              G   EA  L  +++   I+ D + Y  ++R
Sbjct: 840  IAGMVEEAAQLVKEMREKRIEPDRITYINMIR 871



 Score = 80.1 bits (196), Expect = 1e-12
 Identities = 53/221 (23%), Positives = 102/221 (46%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            ++N +I  CS+   V   ++ F  ML+ G  PN  T  ++L +Y K     +A   F   
Sbjct: 656  MYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLA 715

Query: 1098 RSFRVRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLE 919
            +   +    +Y+ MI++Y +   F      +  MK +    + E +   ++AY ++ ++E
Sbjct: 716  QKRGLVDAISYNTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKECQME 775

Query: 918  EAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMV 739
                VL  M E     +   YN +I  YG+   +D    +  +L + GLEPD  +Y +++
Sbjct: 776  NFRSVLQRMQETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLI 835

Query: 738  EGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARN 616
            + +G A   + A    +E+++   +P+      M+    RN
Sbjct: 836  KAYGIAGMVEEAAQLVKEMREKRIEPDRITYINMIRALQRN 876


>ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297315195|gb|EFH45618.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 906

 Score =  553 bits (1426), Expect = e-155
 Identities = 270/426 (63%), Positives = 336/426 (78%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            VFNT+IYAC+K+G V L +KWF +MLE GV+PNVAT GML+ LYQK  NV+EAEFAF  M
Sbjct: 214  VFNTVIYACTKKGNVKLASKWFQMMLELGVRPNVATIGMLMGLYQKNWNVDEAEFAFSHM 273

Query: 1098 RSFRVRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLE 919
            R F + C+SAYS+MITIYTRL L++KAEE+I  MK D V    ENWLV +NAYSQQGK+E
Sbjct: 274  RKFEIVCESAYSSMITIYTRLRLYEKAEEVINLMKQDRVRLKLENWLVMLNAYSQQGKME 333

Query: 918  EAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMV 739
            +AE VLISM  AG  PNI+AYNTLITGYGKVS M++A+ +F +L  IGLEPDET+YRSM+
Sbjct: 334  QAESVLISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRLSDIGLEPDETSYRSMI 393

Query: 738  EGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIGCQ 559
            EGWGRA +Y+ A  +YQELK+ G++PNSSN+FT++NL A+  D D   +T+EDM  IGCQ
Sbjct: 394  EGWGRADNYEEANHYYQELKRCGYKPNSSNLFTLINLQAKYGDRDGAIKTIEDMTSIGCQ 453

Query: 558  YSSILTILLQAYEKVERLDKVPLVVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALRVL 379
            Y SIL I+LQAYEKV ++D VP ++KG F+ HI +NQTS SILV+AY+K+ +VDD L +L
Sbjct: 454  YPSILGIILQAYEKVGKIDVVPYLLKGSFHNHIRLNQTSFSILVMAYIKHGMVDDCLALL 513

Query: 378  QEKHWKDLIFEDNLYHLLICSCKELGFHEEAIKIFIHMPKSDANPNLHIACTMIDIYGNI 199
            +EK W+D  FE +LYHLLICSCKE G   +A+K++ H  +SD   NLHI  TMIDIY  +
Sbjct: 514  REKKWRDSAFESHLYHLLICSCKESGQLTDAVKLYNHTMESDEEINLHITSTMIDIYTVM 573

Query: 198  GRFTEAEDLYHKLKSSGIKLDMVAYSIVVRMYVKAGSLEDACLVLDTMDKQNDIIPDTFL 19
            G F EAE LY  LKSSG+ LD + +SIVVRMYVKAGSLE+AC VL+ MD+Q DI+PD +L
Sbjct: 574  GEFGEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYL 633

Query: 18   FRDMLR 1
            FRDMLR
Sbjct: 634  FRDMLR 639



 Score =  102 bits (253), Expect = 3e-19
 Identities = 91/405 (22%), Positives = 180/405 (44%), Gaps = 7/405 (1%)
 Frame = -1

Query: 1197 NGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQMRSFRVRCQSA--YSAMITIYTRLGLFD 1024
            N ++ N  +F +L+  Y K G V++   A  + + +R     +  Y  +I      G   
Sbjct: 484  NHIRLNQTSFSILVMAYIKHGMVDDC-LALLREKKWRDSAFESHLYHLLICSCKESGQLT 542

Query: 1023 KAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLEEAERVLISMLEAGVPPNIVAYNTLI 844
             A ++     +     N       I+ Y+  G+  EAE++ +++  +GV  + + ++ ++
Sbjct: 543  DAVKLYNHTMESDEEINLHITSTMIDIYTVMGEFGEAEKLYLNLKSSGVVLDRIGFSIVV 602

Query: 843  TGYGKVSDMDSAQRIFEKLPSI-GLEPDETTYRSMVEGWGRAYHYDNAKWFYQELKKSGF 667
              Y K   ++ A  + E +     + PD   +R M+  + +    D  +  Y  ++KSG 
Sbjct: 603  RMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIQKSGI 662

Query: 666  QPNSSNIFTMLNLCARNKDEDSTFETLEDMRRIGCQYSSI-LTILLQAYEKVERLDKVP- 493
              +      ++N CAR    D    T E+M R G   +++   +LL  Y K +   KV  
Sbjct: 663  HWDQEMYNCVINCCARALPLDELSRTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNE 722

Query: 492  --LVVKGHFYEHILVNQTSCSILVIAYVKNRLVDDALRVLQEKHWKDLIFEDNLYHLLIC 319
              L+ K     H +V+  S + ++ AY KN+   +    ++   +         Y+ L+ 
Sbjct: 723  LFLLAK----RHGVVDVISYNTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLD 778

Query: 318  SCKELGFHEEAIKIFIHMPKSDANPNLHIACTMIDIYGNIGRFTEAEDLYHKLKSSGIKL 139
            +  +    E+   I   M KS + P+ +    MI+IYG  G   E   +  +LK SG+  
Sbjct: 779  AYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGP 838

Query: 138  DMVAYSIVVRMYVKAGSLEDACLVLDTMDKQNDIIPDTFLFRDML 4
            D+ +Y+ +++ Y   G +E+A  ++  M  +N I PD   + +++
Sbjct: 839  DLCSYNTLIKAYGIGGMVEEAVGLVKEMRGKN-ITPDKVTYTNLV 882



 Score = 71.2 bits (173), Expect = 5e-10
 Identities = 51/224 (22%), Positives = 100/224 (44%)
 Frame = -1

Query: 1278 VFNTLIYACSKRGLVTLGTKWFCLMLENGVQPNVATFGMLLSLYQKGGNVEEAEFAFCQM 1099
            ++N +I  C++   +   ++ F  M+  G  PN  TF +LL +Y K    ++    F   
Sbjct: 668  MYNCVINCCARALPLDELSRTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLA 727

Query: 1098 RSFRVRCQSAYSAMITIYTRLGLFDKAEEIIGFMKDDHVIPNSENWLVRINAYSQQGKLE 919
            +   V    +Y+ +I  Y +   F      I  M+ D    + E +   ++AY +  ++E
Sbjct: 728  KRHGVVDVISYNTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQME 787

Query: 918  EAERVLISMLEAGVPPNIVAYNTLITGYGKVSDMDSAQRIFEKLPSIGLEPDETTYRSMV 739
            +   +L  M ++   P+   YN +I  YG+   +D    + ++L   GL PD  +Y +++
Sbjct: 788  KFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLI 847

Query: 738  EGWGRAYHYDNAKWFYQELKKSGFQPNSSNIFTMLNLCARNKDE 607
            + +G     + A    +E++     P+    +T L    R  DE
Sbjct: 848  KAYGIGGMVEEAVGLVKEMRGKNITPDKVT-YTNLVTALRKNDE 890