BLASTX nr result

ID: Aconitum21_contig00021420 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00021420
         (545 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              104   1e-20
ref|XP_003635371.1| PREDICTED: uncharacterized protein LOC100853...   101   7e-20
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    97   1e-18
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    92   7e-17
emb|CAN66028.1| hypothetical protein VITISV_020472 [Vitis vinifera]    85   8e-15

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  104 bits (259), Expect = 1e-20
 Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 34/215 (15%)
 Frame = -3

Query: 543 ISSALARDTSISYDDLVALLFSAELRLKAHQLPAMESAPTAMYASKM------------- 403
           +SSA ARD+ I+Y+ L  LL SAE R+  +  PA      A++A++              
Sbjct: 182 VSSAQARDSPITYEALEVLLLSAERRVSEYAHPAAAEGIHALHATQSRGRGRNSFISGRG 241

Query: 402 -----DSYS----------ARGRGV-----PNPXXXXXXXXXXXRNHFSISSNSGYQSNR 283
                 SYS          +RGRG       +                + + NS + + R
Sbjct: 242 GSNRGGSYSHGITNSGSAHSRGRGTFSHSRGSSGSRRSSILGPAPGTTTSNGNSFFNTGR 301

Query: 282 QPCQICGKTSHSAIDCYDRMNRSYEGRVPTKKLXXXXXXXXXTGYSNTWITDTGASAHIT 103
             CQIC +  HSAIDC++R+N SYEGRVP+ +L         +    TW+TDTGA++H+T
Sbjct: 302 IQCQICSRPGHSAIDCFNRLNLSYEGRVPSSRLNAMTAHHSPS--EETWLTDTGANSHVT 359

Query: 102 PDLANLTIHDQYQGTDQV-AVGNGAGLQISNTGSA 1
           P+L N+     Y+G D +  + + +GL I + GS+
Sbjct: 360 PNLGNIDSPKSYKGLDNLGGINSDSGLSIKHIGSS 394


>ref|XP_003635371.1| PREDICTED: uncharacterized protein LOC100853190 [Vitis vinifera]
          Length = 251

 Score =  101 bits (252), Expect = 7e-20
 Identities = 63/198 (31%), Positives = 88/198 (44%), Gaps = 21/198 (10%)
 Frame = -3

Query: 537 SALARDTSISYDDLVALLFSAELRLK---------------------AHQLPAMESAPTA 421
           S   RD ++S++D  A L S EL L+                       Q       P+ 
Sbjct: 49  SFATRDKNVSFEDFQAELLSYELLLENQNIAIPPETNNFAFFTPKSNQQQYNRKPKNPSK 108

Query: 420 MYASKMDSYSARGRGVPNPXXXXXXXXXXXRNHFSISSNSGYQSNRQPCQICGKTSHSAI 241
            Y+    S + R R  P P           + H        + + + PCQICGK SH A+
Sbjct: 109 PYSRPSFSQNPRPRYSPQPSGLPFSPQPNQKQH-------SFSTPKSPCQICGKLSHKAL 161

Query: 240 DCYDRMNRSYEGRVPTKKLXXXXXXXXXTGYSNTWITDTGASAHITPDLANLTIHDQYQG 61
           DC+  MN +Y+GR P  +L              TW  D+GA+ HIT +L +LT+   Y G
Sbjct: 162 DCFHIMNYAYQGRHPPTQLAAMVANSNAEQEEETWFADSGANQHITANLEHLTLQQPYTG 221

Query: 60  TDQVAVGNGAGLQISNTG 7
            + VAVGNG GL I++TG
Sbjct: 222 QENVAVGNGQGLSIAHTG 239


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 4/179 (2%)
 Frame = -3

Query: 528 ARDTSISYDDLVALLFSAELRLKAHQLPAMESAPTAMYA---SKMDSY-SARGRGVPNPX 361
           +R+T  +++D  A L   E  L  +        P   +A   SK  +Y   +G  +P P 
Sbjct: 188 SRETDFTFEDFQAELLGYENLLDVNHSVHNTDGPHFAFAANKSKAPTYVQKKGPPLP-PT 246

Query: 360 XXXXXXXXXXRNHFSISSNSGYQSNRQPCQICGKTSHSAIDCYDRMNRSYEGRVPTKKLX 181
                     R+  + S+ S   +NR  CQICGK+ H+AIDC+ R + SY+GR P + L 
Sbjct: 247 KMQNAASSNYRSQQTRSTPSQLPNNRPVCQICGKSGHTAIDCFHRFDYSYQGRFPPQDLA 306

Query: 180 XXXXXXXXTGYSNTWITDTGASAHITPDLANLTIHDQYQGTDQVAVGNGAGLQISNTGS 4
                   T     W  D+GA+AHIT D  NLT    +  ++ V VGNG+GLQ+ NTGS
Sbjct: 307 AMVAETNATFDHQVWYMDSGANAHITSDATNLTHQQPFCESETVTVGNGSGLQVLNTGS 365


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 91.7 bits (226), Expect = 7e-17
 Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 9/190 (4%)
 Frame = -3

Query: 543 ISSALARDTSISYDDLVALLFSAELR--LKAHQLPAMESAPTAMYASKMDSYS------- 391
           +++ +AR   I+  DL   L S E R  L+      M+S+  A    +  S+        
Sbjct: 185 VTAVVARSDPITPGDLYTQLLSYENRMHLQTGSSSLMQSSANARSPGRGMSWGRSGGRGF 244

Query: 390 ARGRGVPNPXXXXXXXXXXXRNHFSISSNSGYQSNRQPCQICGKTSHSAIDCYDRMNRSY 211
           +RGRG                N++S ++++   S+R  CQ+C +  H+A++C+ R + +Y
Sbjct: 245 SRGRGRGRGPSRGGFQSFGRGNNYSGATDAD-TSSRPRCQVCSRVGHTALNCWYRFDENY 303

Query: 210 EGRVPTKKLXXXXXXXXXTGYSNTWITDTGASAHITPDLANLTIHDQYQGTDQVAVGNGA 31
              VP ++           G +  W TDTGA+ HIT DL  LT+HD+Y GTDQ+   NG 
Sbjct: 304 ---VPDQR--SANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGT 358

Query: 30  GLQISNTGSA 1
           G+ ISN G+A
Sbjct: 359 GMTISNIGNA 368


>emb|CAN66028.1| hypothetical protein VITISV_020472 [Vitis vinifera]
          Length = 823

 Score = 84.7 bits (208), Expect = 8e-15
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 4/179 (2%)
 Frame = -3

Query: 531 LARDTSISYDDLVALLFSAELRLKAHQ-LPAMESAPTAMYASKMDSYS-ARGRGVP-NPX 361
           ++ DT  ++++  A L   E  L  +Q +P  +S   A  A+K  + +  + +G P NP 
Sbjct: 139 VSHDTDFTFEEFQAELLGYENLLDVNQSVPGTDSNHFAFSANKSKAPTYVKKKGPPLNPT 198

Query: 360 XXXXXXXXXXRNHFSISSNSGYQSNRQPC-QICGKTSHSAIDCYDRMNRSYEGRVPTKKL 184
                     + H    S S   SN  P  QICGK  H+AIDC+   + SY+GR P + L
Sbjct: 199 KMQNVGSSNYQPHQQTISTSPQHSNYHPVXQICGKFGHTAIDCFHHFDYSYQGRFPPQDL 258

Query: 183 XXXXXXXXXTGYSNTWITDTGASAHITPDLANLTIHDQYQGTDQVAVGNGAGLQISNTG 7
                    T     W  D+GA+ HIT +  NLT    +  ++ V + NG+ LQ+ NTG
Sbjct: 259 IAMVAETNATFDHQVWYMDSGANTHITSNATNLTHQQSFHESETVNIENGSXLQVLNTG 317