BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00019168
         (3093 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36559.3| unnamed protein product [Vitis vinifera]             1123   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1123   0.0  
ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|2...  1107   0.0  
ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|2...  1102   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1079   0.0  

>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 1123 bits (2905), Expect = 0.0
 Identities = 548/739 (74%), Positives = 623/739 (84%)
 Frame = +3

Query: 6    DDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXX 185
            ++ CVRVVQAA+ IG AIEQEVRIH+FLE+TK F   K +   + E +R+ +EILR    
Sbjct: 73   EEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQ-EGLRE-KEILRKRVK 130

Query: 186  XXXXXXXXXXXXXXXXSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEI 365
                            +E+ T  WGRD QAKLGSRLIELL ETA+VQ P NQ  D PP++
Sbjct: 131  SFIRKKKIIEVQKLVKNEEIT-PWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDV 189

Query: 366  RPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGY 545
            RPAFRHTFKT+ KE G+K   +YGVI+CD LV  GLDRTA+HMVIPYVPMLIPP+KWKGY
Sbjct: 190  RPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGY 249

Query: 546  ERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVED 725
            ++GG+LFLPSYVMRTHG+R+QQDA+KSVP +Q+QKVFEALDTLG TKWR+N+RVL VVE 
Sbjct: 250  DKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVES 309

Query: 726  FWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLS 905
             W +GGN+ GLV+RE+V +PEKP +ED  EIQ WKW+ RK KK N+ERH+ RCD E+KLS
Sbjct: 310  IWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLS 369

Query: 906  VARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKI 1085
            VAR+MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKI
Sbjct: 370  VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKI 429

Query: 1086 HLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLS 1265
             L+NLY GGVEKLSYDGRL FV+NHL+D+ DSAD P++G RWWL AEDPFQCLAACINLS
Sbjct: 430  QLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLS 489

Query: 1266 EALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXXRPADVYSEIAAR 1445
            EAL+SS+P+TV+SHLPIHQDGSCNGLQHYAALGR+S            +PADVYSEIAAR
Sbjct: 490  EALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAAR 549

Query: 1446 VLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 1625
            V +IMKRD  KDPA DP A+LAKVLIGQVDRKLVKQTVMTSVYGVTY+GAREQIKRRL E
Sbjct: 550  VHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAE 609

Query: 1626 RGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLG 1805
            +G ITD+RLLF AACYAAKVTL ALGE+FQAAR IM WLGECAK+IASENQPV+WTTPLG
Sbjct: 610  KGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLG 669

Query: 1806 LPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVAC 1985
            LPV+QPY KSERHLIRTSLQVLALQREG  V +++QRTAFPPNFVHSLDGSHMMMTAVAC
Sbjct: 670  LPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVAC 729

Query: 1986 RDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXX 2165
            RDAGL FAGVHDSFWTHACDVD+MNQILREKF+ELYS+PIL+ LLESFQTS         
Sbjct: 730  RDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPL 789

Query: 2166 XDRGDFDLKHVLDSPYFFN 2222
             DRG+FDL+ VL+SPYFFN
Sbjct: 790  PDRGNFDLREVLESPYFFN 808


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1123 bits (2905), Expect = 0.0
 Identities = 548/739 (74%), Positives = 623/739 (84%)
 Frame = +3

Query: 6    DDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXX 185
            ++ CVRVVQAA+ IG AIEQEVRIH+FLE+TK F   K +   + E +R+ +EILR    
Sbjct: 244  EEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQ-EGLRE-KEILRKRVK 301

Query: 186  XXXXXXXXXXXXXXXXSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEI 365
                            +E+ T  WGRD QAKLGSRLIELL ETA+VQ P NQ  D PP++
Sbjct: 302  SFIRKKKIIEVQKLVKNEEIT-PWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDV 360

Query: 366  RPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGY 545
            RPAFRHTFKT+ KE G+K   +YGVI+CD LV  GLDRTA+HMVIPYVPMLIPP+KWKGY
Sbjct: 361  RPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGY 420

Query: 546  ERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVED 725
            ++GG+LFLPSYVMRTHG+R+QQDA+KSVP +Q+QKVFEALDTLG TKWR+N+RVL VVE 
Sbjct: 421  DKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVES 480

Query: 726  FWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLS 905
             W +GGN+ GLV+RE+V +PEKP +ED  EIQ WKW+ RK KK N+ERH+ RCD E+KLS
Sbjct: 481  IWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLS 540

Query: 906  VARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKI 1085
            VAR+MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKI
Sbjct: 541  VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKI 600

Query: 1086 HLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLS 1265
             L+NLY GGVEKLSYDGRL FV+NHL+D+ DSAD P++G RWWL AEDPFQCLAACINLS
Sbjct: 601  QLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLS 660

Query: 1266 EALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXXRPADVYSEIAAR 1445
            EAL+SS+P+TV+SHLPIHQDGSCNGLQHYAALGR+S            +PADVYSEIAAR
Sbjct: 661  EALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAAR 720

Query: 1446 VLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 1625
            V +IMKRD  KDPA DP A+LAKVLIGQVDRKLVKQTVMTSVYGVTY+GAREQIKRRL E
Sbjct: 721  VHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAE 780

Query: 1626 RGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLG 1805
            +G ITD+RLLF AACYAAKVTL ALGE+FQAAR IM WLGECAK+IASENQPV+WTTPLG
Sbjct: 781  KGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLG 840

Query: 1806 LPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVAC 1985
            LPV+QPY KSERHLIRTSLQVLALQREG  V +++QRTAFPPNFVHSLDGSHMMMTAVAC
Sbjct: 841  LPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVAC 900

Query: 1986 RDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXX 2165
            RDAGL FAGVHDSFWTHACDVD+MNQILREKF+ELYS+PIL+ LLESFQTS         
Sbjct: 901  RDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPL 960

Query: 2166 XDRGDFDLKHVLDSPYFFN 2222
             DRG+FDL+ VL+SPYFFN
Sbjct: 961  PDRGNFDLREVLESPYFFN 979


>ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1|
            predicted protein [Populus trichocarpa]
          Length = 882

 Score = 1107 bits (2864), Expect = 0.0
 Identities = 537/739 (72%), Positives = 616/739 (83%)
 Frame = +3

Query: 6    DDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXX 185
            +D CVRVVQAA+ IG AIEQEVRIHNFLE+TK ++ RKK   +  E++ K +E+LR    
Sbjct: 146  EDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQ-RKKTMHEVQETMDKEKEVLRKRVN 204

Query: 186  XXXXXXXXXXXXXXXXSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEI 365
                             +D T  W R  QAKLGSRLIELL ETA+VQPP NQ  D PP++
Sbjct: 205  SLIRRKRLMEVQNLV-KQDETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDV 263

Query: 366  RPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGY 545
            RPAFRH FKT+ K PG+K   +YGVI+CD L+  GLD TA+HM+IPY PML+PP+KWKGY
Sbjct: 264  RPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGY 323

Query: 546  ERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVED 725
            ++GGHLFLPSYVMRTHG+RQQQ A++SVP KQMQKVFEALDTLG TKWRVN+R+L VVE 
Sbjct: 324  DKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVER 383

Query: 726  FWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLS 905
             W  GGN+AGLV+RED+ +PEKP S+D  EIQKWKWSVRK KK N+ERH+QRCD ELKLS
Sbjct: 384  IWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLS 443

Query: 906  VARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKI 1085
            VAR++K+EEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF EGRPLGKSGL+WLKI
Sbjct: 444  VARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKI 503

Query: 1086 HLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLS 1265
            HL+NLY GGVEKLS+DGRL FVENHL++I DSA  PV+GKRWWL AEDPFQCLAACINLS
Sbjct: 504  HLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLS 563

Query: 1266 EALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXXRPADVYSEIAAR 1445
            EAL S++P+TV+SHLPIHQDGSCNGLQHYAALGRD+            +P+DVYSEIA R
Sbjct: 564  EALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAAEKPSDVYSEIAVR 623

Query: 1446 VLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 1625
            V +I++RD  KDPA +P A+LAK+L+ QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE
Sbjct: 624  VHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 683

Query: 1626 RGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLG 1805
            +G ITDDRLLF AACY AKVTLTALGE+FQAAR IM WLG+CAKIIASE+QPV+WTTPLG
Sbjct: 684  KGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQPVQWTTPLG 743

Query: 1806 LPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVAC 1985
            LPVVQPY K+ERHLI+TSLQ+LALQREG  V+V++QRTAFPPNFVHSLDGSHMMMTAVAC
Sbjct: 744  LPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVAC 803

Query: 1986 RDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXX 2165
            RDAGL FAGVHDSFWTHA DVD MN+ILREKF+ELY++PIL+ LLE FQTS         
Sbjct: 804  RDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPILENLLEDFQTSYPTLQFPPL 863

Query: 2166 XDRGDFDLKHVLDSPYFFN 2222
             +RG+FDL+ VL SPYFFN
Sbjct: 864  PERGNFDLQKVLRSPYFFN 882


>ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1|
            predicted protein [Populus trichocarpa]
          Length = 982

 Score = 1102 bits (2850), Expect = 0.0
 Identities = 539/739 (72%), Positives = 614/739 (83%)
 Frame = +3

Query: 6    DDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXX 185
            +D CVRVVQAA+ IG AIEQEVRIHNFLE+TK  + RKK   D  ES+ K +E+LR    
Sbjct: 246  EDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQ-RKKTMHDVQESMDKEKEMLRKRVN 304

Query: 186  XXXXXXXXXXXXXXXXSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEI 365
                             +D T  W RD QAKLGSRLIELL ETA+VQPP +Q    PP++
Sbjct: 305  SLIRRKRLMEVQNLVI-QDETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDV 363

Query: 366  RPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGY 545
            RPAFRH FK++ K PG+K   +YGVI+CD L+  GLD TA+HM+IPY PML+PP+KW+GY
Sbjct: 364  RPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGY 423

Query: 546  ERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVED 725
            ++GGHLFLPSY+MRTHG+RQQQDA++SVP KQMQKVFEALDTLG TKWRVN +VL VVE 
Sbjct: 424  DKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVER 483

Query: 726  FWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLS 905
             W  GGN AGLVNR D+ +PEK  S+D  EIQKWKWSVRK KK N+ERH+QRCD ELKLS
Sbjct: 484  IWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLS 543

Query: 906  VARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKI 1085
            VAR++K+EEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEFAEGRPLGKSGL WLKI
Sbjct: 544  VARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKI 603

Query: 1086 HLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLS 1265
            HL+NLY GGVEKLS+DGRL FVENHL++I DSA+ PV+GKRWWL AEDPFQCLAACINLS
Sbjct: 604  HLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLS 663

Query: 1266 EALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXXRPADVYSEIAAR 1445
            EALKS++P+TV+SHLPIHQDGSCNGLQHYAALGRDS            +P+DVYSEIA R
Sbjct: 664  EALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQEAAAVNLVAAEKPSDVYSEIATR 723

Query: 1446 VLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 1625
            V +I++RD  KDPA +P A+LAKVLI +VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE
Sbjct: 724  VHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 783

Query: 1626 RGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLG 1805
            +G ITDDR+LF AACYAAKVTLTALGE+FQAAR IMGWLG+CAK+IASE+QPVRWTTPLG
Sbjct: 784  KGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLG 843

Query: 1806 LPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVAC 1985
            LPVVQPY K++RHLIRTSLQVLALQREG  V+V++QRTAFPPNFVHSLDGSHMMMTAVAC
Sbjct: 844  LPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVAC 903

Query: 1986 RDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXX 2165
            RDA L FAGVHDSFWTHA D D MN+ILREKF+ELY++PIL+ LLE FQTS         
Sbjct: 904  RDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSL 963

Query: 2166 XDRGDFDLKHVLDSPYFFN 2222
             +RG+FDL+ VL SPYFFN
Sbjct: 964  PERGNFDLQEVLRSPYFFN 982


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1079 bits (2790), Expect = 0.0
 Identities = 524/740 (70%), Positives = 609/740 (82%)
 Frame = +3

Query: 3    QDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXX 182
            +++ CV+VVQAA+ IG A+E EVRIHNFLE+TKK +        + +  R+   ILR   
Sbjct: 241  KEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETM-ILRKRV 299

Query: 183  XXXXXXXXXXXXXXXXXSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPE 362
                             SE+   SWGRD QAKLG RL+ELL ETA+VQPP +Q  D PP+
Sbjct: 300  KSLIKRNRVVEVRKLMKSEEPE-SWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPD 358

Query: 363  IRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKG 542
            IRPAFRH F+   ++PG+    +YGVI+CD LV  G+DRT + M+IPYVPML+PP+KW+G
Sbjct: 359  IRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRG 418

Query: 543  YERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVE 722
            Y++GG+LFLPSY+MRTHG+R+QQDA++SVP KQMQ+V+EALDTLG TKWRVNKR+L VVE
Sbjct: 419  YDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVE 478

Query: 723  DFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKL 902
              W  GGN+AGLV+R+DV +PE   S+D ME++KWKW VRK KK N+E H+QRCD ELKL
Sbjct: 479  SIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKL 537

Query: 903  SVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLK 1082
            SVAR++K+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSGL+WLK
Sbjct: 538  SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK 597

Query: 1083 IHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINL 1262
            IHL++LY GG+EKL YD RL FVENH++DILDSA+ P++G RWWLNAEDPFQCLAACINL
Sbjct: 598  IHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINL 657

Query: 1263 SEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXXRPADVYSEIAA 1442
            SEALKSS+P+TV SHLPIHQDGSCNGLQHYAALGRDS            +PADVY+EIA 
Sbjct: 658  SEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIAL 717

Query: 1443 RVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 1622
            RV  I++ D  KDPA DP A+LAK+LI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE
Sbjct: 718  RVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 777

Query: 1623 ERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPL 1802
            E+G I DDRLLF A+CYAAKVTL ALGE+FQAARG M WLG+CAK+IASENQPVRWTTPL
Sbjct: 778  EKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPL 837

Query: 1803 GLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVA 1982
            GLPVVQPY K++RH+IRTSLQVLALQREGD VEV++QRTAFPPNFVHSLDGSHMMMTAVA
Sbjct: 838  GLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVA 897

Query: 1983 CRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXX 2162
            CRDAGL FAGVHDSFWTHACDVD+MN+ILREKF+ELYS+PIL+ LLESFQ S        
Sbjct: 898  CRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPP 957

Query: 2163 XXDRGDFDLKHVLDSPYFFN 2222
               RGDFDL  VL+SPYFFN
Sbjct: 958  LPKRGDFDLVEVLESPYFFN 977