BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00015960
         (965 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37517.3| unnamed protein product [Vitis vinifera]              400   e-109
ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ...   400   e-109
ref|XP_002307047.1| predicted protein [Populus trichocarpa] gi|2...   378   e-102
ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...   378   e-102
ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycin...   360   3e-97

>emb|CBI37517.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  400 bits (1028), Expect = e-109
 Identities = 194/306 (63%), Positives = 228/306 (74%), Gaps = 3/306 (0%)
 Frame = -3

Query: 960  MERDMKAVSQGDKRKHEALMDNLQQMKACFSDARLNKVKLLDALGIFFERSNRSGGDEHR 781
            ME DMKAVS G KR++E L   L+QMKACF DARLNKVKLL+A+ +FFERSNRS GDE  
Sbjct: 241  MECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARLNKVKLLEAMALFFERSNRSSGDEQH 300

Query: 780  VAGDIIRRCGVCNEFDMVLKKKPDGNFMVGCLGYPHCRNVVWLPGSISEATVTTQVCNSC 601
              GD++R+C +C E DMVL++KPDGNFMVGCLGYP CRNVVWLPGSISEA +TT  CN C
Sbjct: 301  EVGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHC 360

Query: 600  TPGPIFMIQFKFRQVEIPPGYDVNHLGCIGGCDETLRELIEICGTGSRNLXXXXXXXARG 421
            TPGP++ IQFKFR++EIPP Y+++HLGC+ GCDE LR+L EICGTGSR         ARG
Sbjct: 361  TPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSR-------ISARG 413

Query: 420  RGP-TSSSNAQQTNARDTACTHCRQTGHSSSVCPSRDVQPPSAQPRRRNTQSGEASIPCT 244
            RG   SS+NAQ++N R TAC HC QTGHSS+ CPSR  +  ++Q  R N  SGE+SIPC 
Sbjct: 414  RGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSRVPRSRNSQSHRTNMPSGESSIPCN 473

Query: 243  TCGEPCVLRIANTENNRGRKFYSC--RECNFFAWEDGGNNSTGGGVAPHANRGGGGVAPH 70
             CG PC+LR ANTENNRGRKFYSC  +ECNFF WED  N+S+GG  A  A        P 
Sbjct: 474  VCGTPCILRTANTENNRGRKFYSCQSQECNFFVWEDSLNSSSGGRSAQPATARSSASNPS 533

Query: 69   ANRGRG 52
               GRG
Sbjct: 534  RRGGRG 539


>ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
          Length = 914

 Score =  400 bits (1028), Expect = e-109
 Identities = 194/306 (63%), Positives = 228/306 (74%), Gaps = 3/306 (0%)
 Frame = -3

Query: 960  MERDMKAVSQGDKRKHEALMDNLQQMKACFSDARLNKVKLLDALGIFFERSNRSGGDEHR 781
            ME DMKAVS G KR++E L   L+QMKACF DARLNKVKLL+A+ +FFERSNRS GDE  
Sbjct: 566  MECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARLNKVKLLEAMALFFERSNRSSGDEQH 625

Query: 780  VAGDIIRRCGVCNEFDMVLKKKPDGNFMVGCLGYPHCRNVVWLPGSISEATVTTQVCNSC 601
              GD++R+C +C E DMVL++KPDGNFMVGCLGYP CRNVVWLPGSISEA +TT  CN C
Sbjct: 626  EVGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHC 685

Query: 600  TPGPIFMIQFKFRQVEIPPGYDVNHLGCIGGCDETLRELIEICGTGSRNLXXXXXXXARG 421
            TPGP++ IQFKFR++EIPP Y+++HLGC+ GCDE LR+L EICGTGSR         ARG
Sbjct: 686  TPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSR-------ISARG 738

Query: 420  RGP-TSSSNAQQTNARDTACTHCRQTGHSSSVCPSRDVQPPSAQPRRRNTQSGEASIPCT 244
            RG   SS+NAQ++N R TAC HC QTGHSS+ CPSR  +  ++Q  R N  SGE+SIPC 
Sbjct: 739  RGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSRVPRSRNSQSHRTNMPSGESSIPCN 798

Query: 243  TCGEPCVLRIANTENNRGRKFYSC--RECNFFAWEDGGNNSTGGGVAPHANRGGGGVAPH 70
             CG PC+LR ANTENNRGRKFYSC  +ECNFF WED  N+S+GG  A  A        P 
Sbjct: 799  VCGTPCILRTANTENNRGRKFYSCQSQECNFFVWEDSLNSSSGGRSAQPATARSSASNPS 858

Query: 69   ANRGRG 52
               GRG
Sbjct: 859  RRGGRG 864


>ref|XP_002307047.1| predicted protein [Populus trichocarpa] gi|222856496|gb|EEE94043.1|
            predicted protein [Populus trichocarpa]
          Length = 910

 Score =  378 bits (971), Expect = e-102
 Identities = 184/320 (57%), Positives = 219/320 (68%), Gaps = 4/320 (1%)
 Frame = -3

Query: 960  MERDMKAVSQGDKRKHEALMDNLQQMKACFSDARLNKVKLLDALGIFFERSNRSGGDEHR 781
            ME DMK VS G+K K E L   LQQMKACF DA++NKVKLL+A+ IFF RS+RS GD+  
Sbjct: 567  MECDMKEVSVGNKSKAEVLATCLQQMKACFLDAKVNKVKLLEAMAIFFNRSDRSNGDDSS 626

Query: 780  VAGDIIRRCGVCNEFDMVLKKKPDGNFMVGCLGYPHCRNVVWLPGSISEATVTTQVCNSC 601
              G+ +R CG+C E +MVLKK  DGNFMVGC G+P CRN VWLPG + EAT+T  +CNSC
Sbjct: 627  ALGENVRPCGLCQEANMVLKKNRDGNFMVGCSGFPQCRNAVWLPGPVLEATITNNICNSC 686

Query: 600  TPGPIFMIQFKFRQVEIPPGYDVNHLGCIGGCDETLRELIEICGTGSRNLXXXXXXXARG 421
            TPGP+++IQFKFRQ+EIPPG++VNHLGCIGGCDETLR+LIEICGTGSR           G
Sbjct: 687  TPGPVYLIQFKFRQLEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSR--------VQGG 738

Query: 420  RGP--TSSSNAQQTNARDTACTHCRQTGHSSSVCPSRDVQPPSAQPRRRNTQSGEASIPC 247
             GP  T+ SN Q++N+R   C +C QTGH+S+ CPSR       Q    N Q+GE+SIPC
Sbjct: 739  NGPPTTTPSNPQRSNSRQAPCIYCYQTGHASTDCPSRISATRHVQSHGMNQQNGESSIPC 798

Query: 246  TTCGEPCVLRIANTENNRGRKFYSC--RECNFFAWEDGGNNSTGGGVAPHANRGGGGVAP 73
            +TCG PCVLR ANT NNRGRKFYSC  + CNFF WED  NN +    AP  N       P
Sbjct: 799  STCGTPCVLRTANTANNRGRKFYSCSSQACNFFVWEDNLNNGSAPRSAPRPNMSNSASNP 858

Query: 72   HANRGRGGSAPHANGGRSTT 13
                GRG    +A      T
Sbjct: 859  SRRGGRGRGVQNAGRAADVT 878


>ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
          Length = 925

 Score =  378 bits (970), Expect = e-102
 Identities = 185/312 (59%), Positives = 224/312 (71%), Gaps = 9/312 (2%)
 Frame = -3

Query: 960  MERDMKAVSQGDKRKHEALMDNLQQMKACFSDARLNKVKLLDALGIFFERSNRSGGDEHR 781
            ME +MKAVS+G KRK E L   LQQMK CF DAR+NK KLL+A+ +FFERSN SGGDE+R
Sbjct: 573  MEHEMKAVSEGTKRKDEVLASCLQQMKTCFLDARVNKQKLLEAMEVFFERSNGSGGDENR 632

Query: 780  VAGDIIRRCGVCNEFDMVLKKKPDGNFMVGCLGYPHCRNVVWLPGSISEATVTTQVCNSC 601
              G++++ CG+C + DMVLK+  DGN+MVGCLG+P CRNVVWLPGSI+EATVT+  C  C
Sbjct: 633  AVGEVVQLCGLCQDSDMVLKRNRDGNYMVGCLGFPQCRNVVWLPGSIAEATVTSDRCTLC 692

Query: 600  TPGPIFMIQFKFRQVEIPPGYDVNHLGCIGGCDETLRELIEICGTGSRNLXXXXXXXARG 421
            TPGP+++IQFKFRQ+EIPP Y+ NHLGC+GGCD+ LR+L EICGTGSR         ARG
Sbjct: 693  TPGPVYLIQFKFRQLEIPPNYNANHLGCVGGCDDILRQLTEICGTGSR-------VSARG 745

Query: 420  RGPTSSSNAQQTNARDTACTHCRQTGHSSSVCPSRDVQPPSAQPRRRNTQSGEASIPCTT 241
            RG TSSSN Q+ N   + C  C+Q GHSS+ CPS+ V   SAQ R    QSGE+S+ C++
Sbjct: 746  RG-TSSSNVQRDNPGQSVCIFCQQVGHSSNDCPSQSVGSRSAQRR----QSGESSVSCSS 800

Query: 240  CGEPCVLRIANTENNRGRKFYSC--RECNFFAWEDGGNNSTGGGVAPHANRGGGGVAP-- 73
            CG PCVLR ANT NNRGRKFY C  +ECNFF WED  +N  GG     +N    G AP  
Sbjct: 801  CGSPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNGGNSVQRSNVRSSGSAPSN 860

Query: 72   -----HANRGRG 52
                 +  RGRG
Sbjct: 861  LNPGQNTGRGRG 872


>ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycine max]
          Length = 913

 Score =  360 bits (924), Expect = 3e-97
 Identities = 181/315 (57%), Positives = 218/315 (69%), Gaps = 10/315 (3%)
 Frame = -3

Query: 963  KMERDMKAVSQGDKRKHEALMDNLQQMKACFSDARLNKVKLLDALGIFFERSNRSGGDEH 784
            +ME+ M  V +GDK K E L+  LQ+M+ACF +ARLNKVKLL+A+ IFFERS RS  DE 
Sbjct: 570  EMEKKMDDVKKGDKSKAEVLVTILQKMEACFLEARLNKVKLLEAMAIFFERSTRSSSDEL 629

Query: 783  RVAGDIIRRCGVCNEFDMVLKKKPDGNFMVGCLGYPHCRNVVWLPGSISEATVTTQVCNS 604
               G+++RRCG+C E DM+L+K  DGNFMVGC+GYP CRN VWLPGS+SEA VTT  CN 
Sbjct: 630  HATGEVVRRCGLCQESDMLLRKNRDGNFMVGCMGYPQCRNAVWLPGSVSEAVVTTNTCNF 689

Query: 603  CTPGPIFMIQFKFRQVEIPPGYDVNHLGCIGGCDETLRELIEICGTGSRNLXXXXXXXAR 424
            CTPGP+++IQFKFR++EIPP Y  NHLGCIGGCDE L +L EICG G R         AR
Sbjct: 690  CTPGPVYLIQFKFRRLEIPPNYSPNHLGCIGGCDEILAQLTEICGRGPR-------MPAR 742

Query: 423  GRGPTS-SSNAQQTNARDTACTHCRQTGHSSSVCPSRDVQPPSAQPRRRNTQSGEASIPC 247
             RGPT+ +SNA  TN R  AC +CR+TGHSS+ CP R     + Q    +  +GEAS+ C
Sbjct: 743  PRGPTAPTSNAHHTNPRQGACMNCRETGHSSTDCPLR---YGNVQHHGTSEHNGEASVSC 799

Query: 246  TTCGEPCVLRIANTENNRGRKFYSC--RECNFFAWEDGGNNSTGGGVAPHAN-------R 94
            ++CG PCVLR ANT NNRGRKFYSC  +ECNFF WED  N  TGG     +N       R
Sbjct: 800  SSCGTPCVLRTANTVNNRGRKFYSCQSQECNFFVWEDSLNAGTGGRSVTRSNSIPALNPR 859

Query: 93   GGGGVAPHANRGRGG 49
              GG     +RGRGG
Sbjct: 860  QTGG---RGSRGRGG 871