BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00014319
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              172   2e-41
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   172   2e-41
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...   172   3e-41
ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub...   171   4e-41
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   171   4e-41

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  172 bits (437), Expect = 2e-41
 Identities = 86/145 (59%), Positives = 103/145 (71%)
 Frame = +2

Query: 2   VHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXXL 181
           V EIL+R   +TRKKL  KGYFPQDGYILQ +PVPPNCLS+P                 L
Sbjct: 240 VMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSML 299

Query: 182 RKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKEA 361
           +KVLKQ E+IK SRSG PNFESHK+E N+LQS + QY   RGTAK +R++  R G++KE 
Sbjct: 300 KKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEP 359

Query: 362 EDSATKAWLEKMRTFFISKGSGYCS 436
            +S+TKAWLEKMRT FI KGSG+ S
Sbjct: 360 NESSTKAWLEKMRTLFIRKGSGFSS 384


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  172 bits (437), Expect = 2e-41
 Identities = 86/145 (59%), Positives = 103/145 (71%)
 Frame = +2

Query: 2   VHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXXL 181
           V EIL+R   +TRKKL  KGYFPQDGYILQ +PVPPNCLS+P                 L
Sbjct: 180 VMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSML 239

Query: 182 RKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKEA 361
           +KVLKQ E+IK SRSG PNFESHK+E N+LQS + QY   RGTAK +R++  R G++KE 
Sbjct: 240 KKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEP 299

Query: 362 EDSATKAWLEKMRTFFISKGSGYCS 436
            +S+TKAWLEKMRT FI KGSG+ S
Sbjct: 300 NESSTKAWLEKMRTLFIRKGSGFSS 324


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score =  172 bits (435), Expect = 3e-41
 Identities = 86/145 (59%), Positives = 101/145 (69%)
 Frame = +2

Query: 2   VHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXXL 181
           V +ILKR   ETRKKLS KGYFPQDGYILQ++PVPPNCLS+P                 L
Sbjct: 182 VMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSDLSISML 241

Query: 182 RKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKEA 361
           +KVLKQAE+I+ SRSG PNF++HK E   LQS+V QY + RGT K +R V  R G  KE+
Sbjct: 242 KKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGVKKES 301

Query: 362 EDSATKAWLEKMRTFFISKGSGYCS 436
            +S TKAWLEKMRT FI KGSG+ S
Sbjct: 302 SESTTKAWLEKMRTLFIRKGSGFSS 326


>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2098

 Score =  171 bits (434), Expect = 4e-41
 Identities = 84/143 (58%), Positives = 101/143 (70%)
 Frame = +2

Query: 8   EILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXXLRK 187
           EI+KR  +ET+KKL+ KGYFPQDGY+L+ +PVPPNCLS+P                 LRK
Sbjct: 186 EIIKRIPIETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVSVMSSDPSITILRK 245

Query: 188 VLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKEAED 367
           +L++ EIIK SRSG PNFESH VE NDLQSVV QYF+ RGT+K  R ++   G  KE   
Sbjct: 246 LLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVNKELTA 305

Query: 368 SATKAWLEKMRTFFISKGSGYCS 436
           S+TKAWLEKMRT FI KGSG+ S
Sbjct: 306 SSTKAWLEKMRTLFIRKGSGFSS 328


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  171 bits (434), Expect = 4e-41
 Identities = 88/145 (60%), Positives = 101/145 (69%)
 Frame = +2

Query: 2   VHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXXL 181
           V E+L+R   +TRKKL+ KGYFPQDGYI++ VPVPPNCLS+P                 L
Sbjct: 182 VLEMLRRIPQDTRKKLAKKGYFPQDGYIMRYVPVPPNCLSVPDISDGVSVMSSDLSISML 241

Query: 182 RKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKEA 361
           +KVLKQ EIIK SRSG PNFESH+VE  DLQS V QY + RGTAK  R V  R G  KE+
Sbjct: 242 KKVLKQVEIIKSSRSGEPNFESHEVEAVDLQSAVDQYLQVRGTAKSARDVGERFGVHKES 301

Query: 362 EDSATKAWLEKMRTFFISKGSGYCS 436
            DS+TKAWLEKMRT FI KGSG+ S
Sbjct: 302 NDSSTKAWLEKMRTLFIRKGSGFSS 326