BLASTX nr result
ID: Aconitum21_contig00012808
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum21_contig00012808
(1366 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 421 e-115
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 417 e-114
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 416 e-114
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 415 e-113
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 414 e-113
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 421 bits (1082), Expect = e-115
Identities = 208/423 (49%), Positives = 286/423 (67%), Gaps = 3/423 (0%)
Frame = -3
Query: 1361 SEWIPDTGATHHMTNDPRHLSTQSESYDGTDQIYIGDGSGLSISHFGNSLLHSP-SRSYY 1185
+ W DTGAT H+T + L T E Y+G +QI+ G+G+ ISH G++++H+P SR+ +
Sbjct: 318 TNWYIDTGATDHVTGELDKL-TMKEKYNGGEQIHTASGAGMDISHIGHAIVHNPNSRNIH 376
Query: 1184 LSNILVSPSLKQNLLSVHRFASDNSVFFEFHKSCFLVKDY-SGNTLLRGTVKDGLYQFQS 1008
L N+L P K+NL+SVHR +DNS F E H+ F +KD + TLL+G LY
Sbjct: 377 LRNVLYVPQAKKNLVSVHRLVNDNSAFLELHRDYFFLKDQITRKTLLKGRSWRRLY---- 432
Query: 1007 PLSKAPVK-ALSAISKSTLLWHQRLGHCSPPILRIALNKMSLFIPNKAPPVVWAPCQLAK 831
PL + +K A SAI S WH RLGH S ++ +NK SL + + V CQ AK
Sbjct: 433 PLPHSSLKQAYSAIKLSLDRWHHRLGHPSITTVKQVVNKFSLPCSDLSSESVCNACQQAK 492
Query: 830 SHRFPLYTSEFTSKAPLDLIYSDVWGPCAESSIYGNRYYVSFLDDFTKYLWLFPIKLKSD 651
SH+ P S SK PL+L++SDVWGP ES + +YYVSF+DDF+K+ W++ I+ KS
Sbjct: 493 SHQLPFPISSSVSKHPLELVFSDVWGPAPES-VGRKKYYVSFIDDFSKFTWIYLIQHKSQ 551
Query: 650 VATIFPNFLKQIERQFNTKLKAIQTDWGGEYRHFKYTLQQLGIQHRISCPHTHEQGGAIE 471
V F F +ERQF+ K+ A+QTDWGGEY+ ++GI H +SCPHTH+Q G+ E
Sbjct: 552 VFDKFQEFQVMVERQFDRKILAMQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAE 611
Query: 470 RRHRQVVEIGLSLLAHSNLPLSYWEDAFVSATYLINRLPTPILNNKSPFELVHHRLPDYS 291
R+HR +VEIGLSLL+H+++PL +W++AF ATYLINR+P+ +++N SP E + + PDYS
Sbjct: 612 RKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYS 671
Query: 290 FLRVFGCACWPYLRPYNRHKTYFRSATCIFLGYSPSHHGYKCLDLATGRTYIARHVVFDE 111
LR+FGCACWP LRPYN HK FRS C+FLG+S H G+KCL+++TGR YI+R VVFDE
Sbjct: 672 SLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDE 731
Query: 110 HLF 102
++F
Sbjct: 732 NIF 734
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 417 bits (1072), Expect = e-114
Identities = 203/422 (48%), Positives = 281/422 (66%), Gaps = 2/422 (0%)
Frame = -3
Query: 1361 SEWIPDTGATHHMTNDPRHLSTQSESYDGTDQIYIGDGSGLSISHFGNSLLHSPSRSYYL 1182
S W DTGAT H+TN+ L+T+ + Y+G +QI+ GSG+ I H G S + +P+R+ YL
Sbjct: 313 SNWYVDTGATDHITNELEKLTTR-DRYNGKEQIHTASGSGMDIKHIGQSTIRTPTRNLYL 371
Query: 1181 SNILVSPSLKQNLLSVHRFASDNSVFFEFHKSCFLVKDY-SGNTLLRGTVKDGLYQFQSP 1005
NIL P K+NL+S HR A DN F E H F +KD + NTLLRG +GLY +
Sbjct: 372 RNILHVPRTKKNLISAHRLAVDNHAFVEVHPRFFAIKDQITKNTLLRGPCCNGLYPLPAS 431
Query: 1004 LSKAPVKALSAISKSTLLWHQRLGHCSPPILRIALNKMSLFIPNKAPPV-VWAPCQLAKS 828
S + + L AI + +WH RLGH S I++ ++ +L ++ + V CQ KS
Sbjct: 432 TSSSK-QVLGAIKPTVSIWHSRLGHPSWQIVQKVVSHNNLPCLGESKELGVCDACQKGKS 490
Query: 827 HRFPLYTSEFTSKAPLDLIYSDVWGPCAESSIYGNRYYVSFLDDFTKYLWLFPIKLKSDV 648
H+ P S S PL+L++SDVWGP A S+ G +YYVSF+DDF+K+ W++ +K KS+V
Sbjct: 491 HQLPFLKSTSASNFPLELVFSDVWGP-APDSVGGRKYYVSFIDDFSKFTWIYLLKQKSEV 549
Query: 647 ATIFPNFLKQIERQFNTKLKAIQTDWGGEYRHFKYTLQQLGIQHRISCPHTHEQGGAIER 468
F F + +ER F K+ A+QTDWGGEY ++GI H +SCPHTH+Q G+ ER
Sbjct: 550 FHKFHEFQQLVERIFYRKIIAMQTDWGGEYEKLHDFFTKIGISHHVSCPHTHQQNGSAER 609
Query: 467 RHRQVVEIGLSLLAHSNLPLSYWEDAFVSATYLINRLPTPILNNKSPFELVHHRLPDYSF 288
+HR +VE+GLSLLAH+++PL +W++AF++ATYLINR P+ ++ ++P E + H+ P Y+
Sbjct: 610 KHRHIVEVGLSLLAHASMPLKFWDEAFIAATYLINRTPSKVIQYETPLEHLFHQKPSYTS 669
Query: 287 LRVFGCACWPYLRPYNRHKTYFRSATCIFLGYSPSHHGYKCLDLATGRTYIARHVVFDEH 108
LRVFGCACWP LRPYN K FRS C+FLGYS H G+KCLD+A GR YI+R VVFDE+
Sbjct: 670 LRVFGCACWPNLRPYNARKLQFRSKQCVFLGYSNLHKGFKCLDVAAGRVYISRDVVFDEN 729
Query: 107 LF 102
+F
Sbjct: 730 VF 731
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 416 bits (1068), Expect = e-114
Identities = 204/423 (48%), Positives = 276/423 (65%), Gaps = 3/423 (0%)
Frame = -3
Query: 1361 SEWIPDTGATHHMTNDPRHLSTQSESYDGTDQIYIGDGSGLSISHFGNSLLHSPSRSYYL 1182
+ W DT AT H+T L+T+ E Y GTDQI+ G G+ I H G+S + + SR +L
Sbjct: 312 TNWYVDTEATDHITGQLDKLTTR-EKYKGTDQIHTASGEGMDIQHIGHSYVPTSSRPLHL 370
Query: 1181 SNILVSPSLKQNLLSVHRFASDNSVFFEFHKSCFLVKD-YSGNTLLRGTVKDGLYQFQSP 1005
NIL P +NL+SVHR +DN F E H+ FL+KD + T+L G + LY P
Sbjct: 371 KNILHVPKASKNLISVHRLVADNYAFLEIHQKYFLIKDKVTRRTILEGPCRRDLY----P 426
Query: 1004 LSKA-PVKALSAISKSTLLWHQRLGHCSPPILRIALNKMSLFIPNKAPPV-VWAPCQLAK 831
L P+K + A+ S WH RLGH S PI+ +N+ L N++P V CQ K
Sbjct: 427 LPAGDPIKQVFAVMPSFERWHGRLGHASKPIVLRVINQNKLPCSNESPSESVCDACQQGK 486
Query: 830 SHRFPLYTSEFTSKAPLDLIYSDVWGPCAESSIYGNRYYVSFLDDFTKYLWLFPIKLKSD 651
SH+ P S PL+LI+SDVWGP A S+ RYYVSF+DD++K++W++ +K KS+
Sbjct: 487 SHQLPFPKFFSVSSNPLELIHSDVWGP-ASDSVGAKRYYVSFIDDYSKFVWIYFLKFKSE 545
Query: 650 VATIFPNFLKQIERQFNTKLKAIQTDWGGEYRHFKYTLQQLGIQHRISCPHTHEQGGAIE 471
V F F +ERQFN K+ +QTDWGGEY+ +Q+GI H++SCPHTH+Q GA+E
Sbjct: 546 VFEKFKEFQSMVERQFNRKILGMQTDWGGEYQKLNSFFKQIGIAHQVSCPHTHQQNGAVE 605
Query: 470 RRHRQVVEIGLSLLAHSNLPLSYWEDAFVSATYLINRLPTPILNNKSPFELVHHRLPDYS 291
R+HR +VEIGLSLLAH+++PL +W++AF++ATYLINRLP +++ +P + H+ PDY
Sbjct: 606 RKHRHIVEIGLSLLAHASMPLKFWDEAFLAATYLINRLPRKVIDFDTPLARLFHQQPDYK 665
Query: 290 FLRVFGCACWPYLRPYNRHKTYFRSATCIFLGYSPSHHGYKCLDLATGRTYIARHVVFDE 111
LR FGCACWP LRPYN HK FRS C+FLG+S H G+KCL++ATG+ YI+R V FDE
Sbjct: 666 SLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNLHKGFKCLEVATGQVYISRDVTFDE 725
Query: 110 HLF 102
F
Sbjct: 726 QEF 728
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 415 bits (1067), Expect = e-113
Identities = 198/425 (46%), Positives = 285/425 (67%), Gaps = 5/425 (1%)
Frame = -3
Query: 1361 SEWIPDTGATHHMTNDPRHLSTQSESYDGTDQIYIGDGSGLSISHFGNSLLHSPSRSYYL 1182
+ W DTGAT H+T + L+T+ E Y+G +QI+ G+G+ ISH G++ +H+PSR+ +L
Sbjct: 320 TNWYIDTGATDHITGELEKLTTK-EKYNGNEQIHTASGAGMDISHIGHTTVHTPSRNIHL 378
Query: 1181 SNILVSPSLKQNLLSVHRFASDNSVFFEFHKSCFLVKDY-SGNTLLRGTVKDGLYQFQSP 1005
+N+L P K++L+S + A+DNS F E H F +KD + + LL G + GLY
Sbjct: 379 NNVLYVPQAKKSLISASQLATDNSAFLELHSKFFSIKDQVTKDILLEGRCRHGLYPIPKS 438
Query: 1004 LSKAPVK-ALSAISKSTLLWHQRLGHCSPPILRIALNKMSLFIPNKAPPV---VWAPCQL 837
+ K AL S WH RLGH S PI++ ++K +L P V V CQ
Sbjct: 439 FGRTTSKQALGTTKLSLSRWHSRLGHPSLPIVKQVISKNNL--PCSVESVNQSVCNACQE 496
Query: 836 AKSHRFPLYTSEFTSKAPLDLIYSDVWGPCAESSIYGNRYYVSFLDDFTKYLWLFPIKLK 657
AKS + P S S+ PL+L++SDVWGP ES + N+YYVSF+DDF+K+ W++ +K K
Sbjct: 497 AKSRQLPYVRSTSVSQFPLELVFSDVWGPAPES-VGRNKYYVSFIDDFSKFTWIYLLKYK 555
Query: 656 SDVATIFPNFLKQIERQFNTKLKAIQTDWGGEYRHFKYTLQQLGIQHRISCPHTHEQGGA 477
S+V F F +ER F+ K+ A+QTDWGGEY+ ++GI H +SCPHTH+Q G+
Sbjct: 556 SEVFEKFKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFFAKIGIDHHVSCPHTHQQNGS 615
Query: 476 IERRHRQVVEIGLSLLAHSNLPLSYWEDAFVSATYLINRLPTPILNNKSPFELVHHRLPD 297
ER+HR ++E+GLSLL+++++PL +W++AFV+ATYLINR+P+ + N +P E + ++ PD
Sbjct: 616 AERKHRHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPD 675
Query: 296 YSFLRVFGCACWPYLRPYNRHKTYFRSATCIFLGYSPSHHGYKCLDLATGRTYIARHVVF 117
Y LRVFGCACWP+LRPYN HK FRS C+FLG+S H G+KCLD+++GR YI+R VVF
Sbjct: 676 YLSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVF 735
Query: 116 DEHLF 102
DE++F
Sbjct: 736 DENIF 740
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 414 bits (1064), Expect = e-113
Identities = 197/425 (46%), Positives = 286/425 (67%), Gaps = 5/425 (1%)
Frame = -3
Query: 1361 SEWIPDTGATHHMTNDPRHLSTQSESYDGTDQIYIGDGSGLSISHFGNSLLHSPSRSYYL 1182
+ W DTGAT H+T + L+T+ E Y+G +QI+ G+G+ ISH G++++H+PSR+ +L
Sbjct: 323 TNWYIDTGATDHITGELEKLTTK-EKYNGGEQIHTASGAGMDISHIGHTIVHTPSRNIHL 381
Query: 1181 SNILVSPSLKQNLLSVHRFASDNSVFFEFHKSCFLVKDY-SGNTLLRGTVKDGLYQFQSP 1005
+N+L P K+NL+S + A+DNS F E H F +KD + + LL G + GLY
Sbjct: 382 NNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGLYPIPKS 441
Query: 1004 LSKAPVK-ALSAISKSTLLWHQRLGHCSPPILRIALNKMSLFIPNKAPPV---VWAPCQL 837
++ K AL A S WH RLGH S PI++ +++ +L P V V CQ
Sbjct: 442 FGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQVISRNNL--PCSVESVNQSVCNACQE 499
Query: 836 AKSHRFPLYTSEFTSKAPLDLIYSDVWGPCAESSIYGNRYYVSFLDDFTKYLWLFPIKLK 657
AKSH+ P S S+ PL+L++SDVWGP ES + N+YYVSF+DDF+K+ W++ +K K
Sbjct: 500 AKSHQLPYIRSTSVSQFPLELVFSDVWGPAPES-VGRNKYYVSFIDDFSKFTWIYLLKYK 558
Query: 656 SDVATIFPNFLKQIERQFNTKLKAIQTDWGGEYRHFKYTLQQLGIQHRISCPHTHEQGGA 477
S+V F F +ER F+ K+ A+QTDWGGEY+ Q+GI H +SCPHTH+Q G+
Sbjct: 559 SEVFEKFKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGS 618
Query: 476 IERRHRQVVEIGLSLLAHSNLPLSYWEDAFVSATYLINRLPTPILNNKSPFELVHHRLPD 297
ER+H+ ++E+GLSLL+++++PL +W++AFV+ATYLINR+P+ + N +P E + ++ PD
Sbjct: 619 AERKHKHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPD 678
Query: 296 YSFLRVFGCACWPYLRPYNRHKTYFRSATCIFLGYSPSHHGYKCLDLATGRTYIARHVVF 117
YS LRVF C CWP+L PYN HK FRS C+FLG+S H G+K LD+++GR YI+R VVF
Sbjct: 679 YSSLRVFSCTCWPHLHPYNTHKLQFRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVF 738
Query: 116 DEHLF 102
DE++F
Sbjct: 739 DENVF 743