BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00011203
         (3502 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...  1411   0.0  
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho...  1350   0.0  
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...  1338   0.0  
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]             1328   0.0  
ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1323   0.0  

>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score = 1411 bits (3652), Expect = 0.0
 Identities = 711/1117 (63%), Positives = 862/1117 (77%), Gaps = 6/1117 (0%)
 Frame = -1

Query: 3493 MAIGEKTTLRISNIPYTVIAKELLDFFESLLGKDTVFACEIFSERKNWKSKGAGRVQFES 3314
            MA+GE+ T+++SNIP T IAKEL  F ES LG +T++A EI +E KNWKS+G GRVQFE+
Sbjct: 1    MAVGERPTVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFET 60

Query: 3313 LEHLNAVNQLHRQRKLVFQNAHFEISPSMEDIIVRPNLGSNRISGGVLHVGVLEKEDCFG 3134
            L+   A + L  Q  LVF+ +   IS + +DIIVRP    N++  GVLHVG L ++DC  
Sbjct: 61   LQAKRAADLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCML 120

Query: 3133 VFQEWGTLKVEVMPERKRVEFWVVDKGETYKMVVQFDDVLATSAWGLEGEATNALLLQLK 2954
            V + W  +K  VMPER RVEFWV   GE YK+ V FDDVL +SA  L G   NALLL+LK
Sbjct: 121  VLESWEGVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLK 180

Query: 2953 YAPKVYRKVFGPNVAAKFSADRYHICKENFEFLWVRCTDFSAIKSIGHSSSFCWKFERSI 2774
            YAPK+++K  GPN+A+KFSADRYHI KE+ EFLW+R TDFS+IKS+G S+SFCW+ +   
Sbjct: 181  YAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGF 240

Query: 2773 -SVDILTSFPLYKGELGVLSLTRLEKYCITSEVVPLIQCPSD-SLNYEILFQLNALVHLQ 2600
             ++DI  SFP YK +L  L+L + E +C  S +VPL++C S   L YEILFQLN+LVH Q
Sbjct: 241  PALDIFASFPYYK-DLTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQ 299

Query: 2599 KISFAVVNTXXXXXXXXXXXXSAYTILQKLYMVRSTCYDPVHFIQSQLHDLGKKPKHLPS 2420
            KIS A V+T            +A  ILQKL+  +ST YDP+ FI++Q H +    K+LP 
Sbjct: 300  KISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPP 359

Query: 2419 SSETRLIEDNLMSCHRALITPTKIYLLGPEVETANYVVKHYAKHASDFMRVTFVEEDWSK 2240
            SS +RL  +N+MSCHR L+TP+KIY LGPE+E++NYVVKHYA +ASDF+RV+FVEEDWSK
Sbjct: 360  SSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSK 419

Query: 2239 LPSDAISTTIGQGLFSKPSRTPLYHRILSILRNGIEIGHKRFEFLAFSASQLRSSSVWMF 2060
            LPS+A+S +I +  F+ P RT +YHRILSILR GI IG KRF+FLAFSASQLRS+SVWMF
Sbjct: 420  LPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMF 479

Query: 2059 ASNDTVKTEDIREWMGCFKQFDNVSKCAARMGQLFSSSQQTFIVRPRDVASIHDIEVTND 1880
            ASND V+ +DIREWMGCFK+  +VSKCAARMGQLFSSS QT  V  +DV  I DIEVT+D
Sbjct: 480  ASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSD 539

Query: 1879 GVNYCFSDGIGKISPALAKQVAEKCGLNKIPSAFQIRYGGYKGVIAVDHKSYKKLSLRKS 1700
            G  YCFSDGIGKIS + AKQVA+KCGL++ PSAFQIRYGGYKGVIAVD  S++KLSLR S
Sbjct: 540  GFGYCFSDGIGKISLSFAKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSS 599

Query: 1699 MKKFTSDNRMLNITSWTEPLPCYLNREVVSLLSTLGIQDEKFEAMLCEQIHLLNEMLTNK 1520
            M KF S NRMLN+T W+E  PCYLNRE+VSLLSTLG++DE FEA+L EQ+HLL++MLTN+
Sbjct: 600  MLKFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNR 659

Query: 1519 EAALNVLEEMG--DVKSILVKMLLQGYEPNKEPYLNIMLRAYRAYQLSDIRSKSRIFVPK 1346
            +AAL+VLE MG  D K+IL KMLLQGYEPN EPYL++ML+AYR  QLSDIR++ RIFVPK
Sbjct: 660  QAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPK 719

Query: 1345 GRVLMGCLDETGILDYGQVYVRVTMTRAELQCGTQTFFKKXXXXXXXXXXXXXXTKNPCL 1166
             RVL+GCLDETGIL+YGQVYVRVTMT+AE +C  Q+FF+K              TKNPCL
Sbjct: 720  ARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCL 779

Query: 1165 HPGDIRVLEAVYEPTLE--GFVDCLVFPQKGERPHPNECSGGDLDGDLYFVCWDENLIPM 992
            HPGDIRVL+AVYE  LE  G VDC++FPQKGERPHPNECSGGDLDGD +F+CWDE LIP 
Sbjct: 780  HPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPS 839

Query: 991  HTDTPMDYIARRARITDHDVTLEEIQKFFVDYMINDNLGSISTAHLVHADREPKKARSPK 812
             T+ PMDY +RR RI DHDVTLEEIQKFFVDYMIND LG ISTAHLVHADREP+KARS K
Sbjct: 840  QTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKK 899

Query: 811  CLQLATLHSMAVDFAKTGAPAEFPRALRPKEYPDFMEREDRAMYVSPGVLGKLYRATLDP 632
            CL+LATLHSMAVDFAKTGAPAE PR L+PKE+PDFMER D+ MY+S G LGKLYRAT+  
Sbjct: 900  CLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIAS 959

Query: 631  TEDQTPDLIWSEEVAQAAYDHDLVVDGFESLLARAESYKLLYIEKLNVLMNYYGAESEVE 452
              ++    +WS  +  AAYDHDL VDGFE+ L  A+ +K +Y EK+  LMN+YGAESE E
Sbjct: 960  RVNEKSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDE 1019

Query: 451  IMTGNLRNRSMYLERDRKKYREVKDRILISVKDLQNEAKGWFDSSCEEGKRNQMASAWYH 272
            ++TGNLRN+ MYL+RD +++ E+KDRILISVK LQ EAK W   SC+  +  +MASAWYH
Sbjct: 1020 MLTGNLRNKLMYLQRDNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQKMASAWYH 1079

Query: 271  VTYHRSYCLDPIKALSFAWIVGDRLLDIKSLNRRRIE 161
            VTYH ++       LSF WIVG+ LL IKS N R+ E
Sbjct: 1080 VTYHSTFSSQTPNFLSFPWIVGEVLLVIKSANSRKAE 1116


>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1110

 Score = 1350 bits (3493), Expect = 0.0
 Identities = 666/1112 (59%), Positives = 848/1112 (76%), Gaps = 6/1112 (0%)
 Frame = -1

Query: 3487 IGEKTTLRISNIPYTVIAKELLDFFESLLGKDTVFACEIFSERKNWKSKGAGRVQFESLE 3308
            + E+ ++R++NIP T+ AKE+L +  + LGKD+VFA EI + RKNW S+G GRVQF SLE
Sbjct: 4    VAERPSVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLE 63

Query: 3307 HLNAVNQLHRQRKLVFQNAHFEISPSMEDIIVRPNLGSNRISGGVLHVGVLEKEDCFGVF 3128
              +    L  + KLV ++ + ++S + +DII RP    NR+  GVL+VG ++KE    V 
Sbjct: 64   VKHEALSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVL 123

Query: 3127 QEWGTLKVEVMPERKRVEFWV-VDKGETYKMVVQFDDVLATSAWGLEGEATNALLLQLKY 2951
            + W  ++   MPER+R+EFW+ V +   YK+VV+F+D+L    + L+G+  NA++L+L+Y
Sbjct: 124  EYWEGVRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRY 183

Query: 2950 APKVYRKVFGPNVAAKFSADRYHICKENFEFLWVRCTDFSAIKSIGHSSSFCWKFERSIS 2771
             P++Y+K+ GP +A+KFS +RY  CKE+F+FLWVR TD SAIKSIG S+SFCW+    + 
Sbjct: 184  GPRIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLE 243

Query: 2770 V-DILTSFPLYKGELGVLSLTRLEKYCITSEVVPLIQCPSDSLNYEILFQLNALVHLQKI 2594
              D   +FP Y+ ++  L L   E++C  SE VPLI+C SD L YE+LFQLN+LVH QKI
Sbjct: 244  ASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSDKLAYEVLFQLNSLVHTQKI 303

Query: 2593 SFAVVNTXXXXXXXXXXXXSAYTILQKLYMVRSTCYDPVHFIQSQLHDLGKKPKHLPSSS 2414
            S A V++            +A  ILQKL+ ++ TCYDP+ F++  L +    P   P S 
Sbjct: 304  SLAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSLRESLSSP---PKS- 359

Query: 2413 ETRLIEDNLMSCHRALITPTKIYLLGPEVETANYVVKHYAKHASDFMRVTFVEEDWSKLP 2234
               L E+N+MSCHRALITP+KI+ LGPE ET+NYVVKH+A++ASDF+RVTFVEEDWSKLP
Sbjct: 360  ---LTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLP 416

Query: 2233 SDAISTTIGQGLFSKPSRTPLYHRILSILRNGIEIGHKRFEFLAFSASQLRSSSVWMFAS 2054
            ++AIST+I +G+F+KP RT +YHRILSILR+G  IG KRFEFLAFSASQLRS+SVWMFAS
Sbjct: 417  ANAISTSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFAS 476

Query: 2053 NDTVKTEDIREWMGCFKQFDNVSKCAARMGQLFSSSQQTFIVRPRDVASIHDIEVTNDGV 1874
            N+ VK EDIR+WMGCF +  +VSKCAARMGQLFSSS QTF+V  +DV  I DIEVT DG+
Sbjct: 477  NNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDGI 536

Query: 1873 NYCFSDGIGKISPALAKQVAEKCGLNKIPSAFQIRYGGYKGVIAVDHKSYKKLSLRKSMK 1694
            +YCFSDGIGKIS + AKQVA KCGL+  PSAFQIRYGGYKGV+AVD  S++KLSLR SM 
Sbjct: 537  DYCFSDGIGKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSML 596

Query: 1693 KFTSDNRMLNITSWTEPLPCYLNREVVSLLSTLGIQDEKFEAMLCEQIHLLNEMLTNKEA 1514
            KF S+NRMLN+T W+E +PCYLNRE++SLLSTLG+ DE F+A+  +Q++ L +MLTNKE+
Sbjct: 597  KFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKES 656

Query: 1513 ALNVLEEM--GDVKSILVKMLLQGYEPNKEPYLNIMLRAYRAYQLSDIRSKSRIFVPKGR 1340
            AL+VLE +   D K+ILV+MLLQGYEPN EPYL++ML+AY    L ++RS+ RIFVPKGR
Sbjct: 657  ALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGR 716

Query: 1339 VLMGCLDETGILDYGQVYVRVTMTRAELQCGTQTFFKKXXXXXXXXXXXXXXTKNPCLHP 1160
            +L+GCLDE+GILDYGQVYVR+TMT+AELQC  Q+FF+K              TKNPCLHP
Sbjct: 717  ILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHP 776

Query: 1159 GDIRVLEAVYEPTLE--GFVDCLVFPQKGERPHPNECSGGDLDGDLYFVCWDENLIPMHT 986
            GDIRVLEAVY+  LE  G VDC++FPQ G RPHPNECSGGDLDGD +F+ WDE L+P HT
Sbjct: 777  GDIRVLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHT 836

Query: 985  DTPMDYIARRARITDHDVTLEEIQKFFVDYMINDNLGSISTAHLVHADREPKKARSPKCL 806
            + PMDY+  R RI DH+VTLEEIQ+FFVDYMIND LG+ISTAHLVHAD EP KARS KCL
Sbjct: 837  EAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCL 896

Query: 805  QLATLHSMAVDFAKTGAPAEFPRALRPKEYPDFMEREDRAMYVSPGVLGKLYRATLDPTE 626
            QLATLHSMAVDFAKTGAPAE P  L+P+E+PDFMER ++ MY+S GVLGKLYR   D T 
Sbjct: 897  QLATLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTR 956

Query: 625  DQTPDLIWSEEVAQAAYDHDLVVDGFESLLARAESYKLLYIEKLNVLMNYYGAESEVEIM 446
             +  + +WS+++A+A YD DL V GFE  L  A  YK  Y+EK++ LM+YYGA++E EI+
Sbjct: 957  QERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEIL 1016

Query: 445  TGNLRNRSMYLERDRKKYREVKDRILISVKDLQNEAKGWFDSSCEEGKRNQMASAWYHVT 266
            TGNLR+R  YL+RD +KY +VKDRIL+S+K+L+ EAK WF+SSC   +   MASAWYHVT
Sbjct: 1017 TGNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQCMASAWYHVT 1076

Query: 265  YHRSYCLDPIKALSFAWIVGDRLLDIKSLNRR 170
            YH +Y  + +  LSF WIVGD LL+IKSLN R
Sbjct: 1077 YHPTYFHERMNCLSFPWIVGDILLNIKSLNSR 1108


>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score = 1338 bits (3462), Expect = 0.0
 Identities = 671/1110 (60%), Positives = 836/1110 (75%), Gaps = 7/1110 (0%)
 Frame = -1

Query: 3472 TLRISNIPYTVIAKELLDFFESLLGKDTVFACEIFSERKNWKSKGAGRVQFESLEHLNAV 3293
            T+R+SNIP T IAK+L DFFES +GK +VFAC+IFSE KNWKS+G GRVQFE+ +     
Sbjct: 10   TVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSKLQS 69

Query: 3292 NQLHRQRKLVFQNAHFEISPSMEDIIVRPNLGSNRISGGVLHVGVLEKEDCFGVFQEWGT 3113
              L  Q KLVF+     ++ S +DII RP   + R   G+LH G+L + D   V + W  
Sbjct: 70   LSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLETWEN 129

Query: 3112 LKVEVMPERKRVEFWVVD-KGETYKMVVQFDDVLATSAWGLEGEATNALLLQLKYAPKVY 2936
            +K  +MPERK +EFWV   KGE Y++ VQF D++ T    LE E T ALLL+LK+APK+Y
Sbjct: 130  VKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEKT-ALLLKLKHAPKLY 188

Query: 2935 RKVFGPNVAAKFSADRYHICKENFEFLWVRCTDFSAIKSIGHSSSFCWKFERSI-SVDIL 2759
            ++V GP VA+KFS+DRYH+C+E+ EFLWVR TDFSA+KSIG SSS CW+ E  + S D+L
Sbjct: 189  QRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLL 248

Query: 2758 TSFPLYKGELGVLSLTRLEKYCITSEVVPLIQCPSD-SLNYEILFQLNALVHLQKISFAV 2582
            +  P    ++  L L  +      SE+VPL   PSD  L YEILFQLN+L+H  KIS   
Sbjct: 249  SGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLIHTHKISLGA 308

Query: 2581 VNTXXXXXXXXXXXXSAYTILQKLYMVRSTCYDPVHFIQSQLHDLGKKPKHLPSSSETRL 2402
            V T            +A  ILQK++ ++STC++PV FI+++LH LGK  K+ PSSS +RL
Sbjct: 309  VKTDLIEVLSKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQPSSSYSRL 368

Query: 2401 IEDNLMSCHRALITPTKIYLLGPEVETANYVVKHYAKHASDFMRVTFVEEDWSKLPSDAI 2222
            +  N+MS HR L+TP+K+Y LGPE+ET+NY+VK++A HASDF+RVTFVEEDW KL  +AI
Sbjct: 369  VNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAI 428

Query: 2221 STTIGQGLFSKPSRTPLYHRILSILRNGIEIGHKRFEFLAFSASQLRSSSVWMFASNDTV 2042
            S ++ QG+F+KP RT +YHRILSILR+G+ IG KRF FLAFSASQLRS+SVWMFASN+ V
Sbjct: 429  SMSVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHV 488

Query: 2041 KTEDIREWMGCFKQFDNVSKCAARMGQLFSSSQQTFIVRPRDVASIHDIEVTNDGVNYCF 1862
            K EDIREWMGCF +  +VSKCAARMGQLFS+S QT  V+   V  + DIEVT+DGV+YCF
Sbjct: 489  KAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCF 548

Query: 1861 SDGIGKISPALAKQVAEKCGLNKIPSAFQIRYGGYKGVIAVDHKSYKKLSLRKSMKKFTS 1682
            SDGIGKIS A A QVA+KCGL+  PSAFQIRYGGYKGVIAVD  S++KLSLR SM KF S
Sbjct: 549  SDGIGKISQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFES 608

Query: 1681 DNRMLNITSWTEPLPCYLNREVVSLLSTLGIQDEKFEAMLCEQIHLLNEMLTNKEAALNV 1502
             NRMLNIT W++ +PCYLNRE+V LLSTLG++D+ FE +L   +HLL +MLT  EAAL+V
Sbjct: 609  KNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDV 668

Query: 1501 LEEM--GDVKSILVKMLLQGYEPNKEPYLNIMLRAYRAYQLSDIRSKSRIFVPKGRVLMG 1328
            LE +  GDVK IL++ML QGY PN EPYL++ML+++   QLSD+RS+ RIF+ KGRVL+G
Sbjct: 669  LESIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVG 728

Query: 1327 CLDETGILDYGQVYVRVTMTRAELQCGTQTFFKKXXXXXXXXXXXXXXTKNPCLHPGDIR 1148
            CLDETGIL+YGQVY R+TMT+AELQ   Q+FF+K              TKNPCLHPGD+R
Sbjct: 729  CLDETGILNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPCLHPGDVR 788

Query: 1147 VLEAVYEPTLE--GFVDCLVFPQKGERPHPNECSGGDLDGDLYFVCWDENLIPMHTDTPM 974
            VLEAVYE  LE   +VDC++FPQKGERPHPNECSGGDLDGDLYF+ WDENLIP  T TPM
Sbjct: 789  VLEAVYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIPRQTVTPM 848

Query: 973  DYIARRARITDHDVTLEEIQKFFVDYMINDNLGSISTAHLVHADREPKKARSPKCLQLAT 794
            DY  RR RI DH+VTL+EIQ+FFVDYMI+D LG+ISTAHLVHADREP KA +PKCLQLAT
Sbjct: 849  DYTGRRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLAT 908

Query: 793  LHSMAVDFAKTGAPAEFPRALRPKEYPDFMEREDRAMYVSPGVLGKLYRATLDPTEDQTP 614
            LHSMAVDFAKTGA AE PR L+P+E+PDF+ER D+ MY+S GVLGKLYRA ++ +     
Sbjct: 909  LHSMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVNSSVRSNS 968

Query: 613  DLIWSEEVAQAAYDHDLVVDGFESLLARAESYKLLYIEKLNVLMNYYGAESEVEIMTGNL 434
            D + S    Q AYDH L+ DG+E+ +  A+++K  Y++++N L+NYYGAE EVEI+TGNL
Sbjct: 969  DDLGSVRAIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEILTGNL 1028

Query: 433  RNRSMYLERDRKKYREVKDRILISVKDLQNEAKGWFDSSCEEGKRNQMASAWYHVTYHRS 254
            R +S+YL+RD ++Y E+KDRIL+S K LQ E KGWF   C+E +  ++ASAWYHVTYH S
Sbjct: 1029 RQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWFTGCCKEDEHKKLASAWYHVTYHPS 1088

Query: 253  YCLDPIKALSFAWIVGDRLLDIKSLNRRRI 164
            YC      L F W+VGD LLDIK  N R+I
Sbjct: 1089 YCEGSANCLGFPWVVGDILLDIKLHNTRKI 1118


>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score = 1328 bits (3436), Expect = 0.0
 Identities = 670/1110 (60%), Positives = 847/1110 (76%), Gaps = 7/1110 (0%)
 Frame = -1

Query: 3481 EKTTLRISNIPYTVIAKELLDFFESLLGKDTVFACEIFSERKNWKSKGAGRVQFESLEHL 3302
            E+ TLR++NIP T +AK+LLDFFES LG D+VFA EI ++R NWKS+G GRVQF + + +
Sbjct: 7    ERPTLRLTNIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAM 66

Query: 3301 NAVNQLHRQRKLVFQNAHFEISPSMEDIIVRPNLGSNRISGGVLHVGVLEKEDCFGVFQE 3122
            +   +L R   L+F++   ++S + +DII RP    +R+ GGVLH G +  +DC  V + 
Sbjct: 67   SDALRLSRHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLER 126

Query: 3121 WGTLKVEVMPERKRVEFWVVDKGETYKMVVQFDDVLATSAWGLEGEATNALLLQLKYAPK 2942
            W  ++  +MPER+R+EFWV   GE YK+   FDD+  T     +G A NALLL+++YAP+
Sbjct: 127  WEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGSACNALLLRVRYAPR 186

Query: 2941 VYRKVFGPNVAAKFSADRYHICKENFEFLWVRCTDFSAIKSIGHSSSFCWKFERSISV-D 2765
             YRKV GPNVA+KFS DRYHICKE F+FLWVR TDFS IKSIG S+SF W+F    S+ D
Sbjct: 187  TYRKVSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISD 246

Query: 2764 ILTSFPLYKGELGVLSLTRLEKYCITSEVVPLIQCPSDS-LNYEILFQLNALVHLQKISF 2588
            + T  P Y+ ++   SL    ++   SE+VPL++ PSDS L YEILFQLNALVH QKIS 
Sbjct: 247  MSTYLPCYREDIQSPSLEARGEFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKISI 306

Query: 2587 AVVNTXXXXXXXXXXXXSAYTILQKLYMVRSTCYDPVHFIQSQLHDLGKKPKHLPSSSET 2408
            A V+T            +A  ILQKL +++S CY+PV F++++L   GK  + +P S   
Sbjct: 307  AAVDTDLIGILSVLPVETAVMILQKLRLLQSPCYNPVSFVKAKL-PTGKNFR-IPLSVSE 364

Query: 2407 RLIEDNLMSCHRALITPTKIYLLGPEVETANYVVKHYAKHASDFMRVTFVEEDWSKLPSD 2228
            RL   N+MSCHRALITPTKIY LGPE+ETANYVVK++A++ASDFMRVTFVEEDWSKL ++
Sbjct: 365  RLKNHNVMSCHRALITPTKIYCLGPELETANYVVKNFAEYASDFMRVTFVEEDWSKLSAN 424

Query: 2227 AISTTIGQGLFSKPSRTPLYHRILSILRNGIEIGHKRFEFLAFSASQLRSSSVWMFASND 2048
            AIST +  G+FS+P +T +Y RILSIL+NGI IG KRF+FLAFSASQLRS+SVWMFASND
Sbjct: 425  AISTGVHLGVFSRPFKTKIYDRILSILQNGIVIGDKRFKFLAFSASQLRSNSVWMFASND 484

Query: 2047 TVKTEDIREWMGCFKQFDNVSKCAARMGQLFSSSQQTFIVRPRDVASIHDIEVTNDGVNY 1868
             VK EDIREWMGCFK+  ++SKCA+RMGQLFSSS  T +V  +DV  I DIEV  DG+NY
Sbjct: 485  EVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINY 544

Query: 1867 CFSDGIGKISPALAKQVAEKCGLNKIPSAFQIRYGGYKGVIAVDHKSYKKLSLRKSMKKF 1688
            CFSDGIGKIS   A+QVAEKCGLN IPSAFQIRYGGYKGV+AVD  S+ K+SLR SM KF
Sbjct: 545  CFSDGIGKISLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKF 604

Query: 1687 TSDNRMLNITSWTEPLPCYLNREVVSLLSTLGIQDEKFEAMLCEQIHLLNEMLTNKEAAL 1508
             S  RMLN+T W+E +PC+LNRE+V+L STLGI+DE FE M  EQ+ LL +MLTN+EAAL
Sbjct: 605  ESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAAL 664

Query: 1507 NVLEEMGDV--KSILVKMLLQGYEPNKEPYLNIMLRAYRAYQLSDIRSKSRIFVPKGRVL 1334
            + L+ +G V  K+ILV+M LQ  EPN +PYL++ML+A+    LSD++S+ RIFVPKGR+L
Sbjct: 665  DTLQSLGGVNSKNILVEM-LQFDEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRIL 723

Query: 1333 MGCLDETGILDYGQVYVRVTMTRAELQCGTQTFFKKXXXXXXXXXXXXXXTKNPCLHPGD 1154
            +GCLDETG L+YGQVY+ + M +AEL+C  Q++F+K              TKNPCLHPGD
Sbjct: 724  IGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGD 783

Query: 1153 IRVLEAVYEPTLE--GFVDCLVFPQKGERPHPNECSGGDLDGDLYFVCWDENLIPMHTDT 980
            +RVLEAVYEP LE  G VDCLVFP+KGERPHPNECSGGDLDGD +F+ WD++LIP  T+ 
Sbjct: 784  VRVLEAVYEPQLEEKGLVDCLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEP 843

Query: 979  PMDYIARRARITDHDVTLEEIQKFFVDYMINDNLGSISTAHLVHADREPKKARSPKCLQL 800
            PMDY  RR RI DH+VTLEEIQKFFVDYMIND LG+ISTAHLVHADREP KARS  CL L
Sbjct: 844  PMDYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPYKARSENCLAL 903

Query: 799  ATLHSMAVDFAKTGAPAEFPRALRPKEYPDFMEREDRAMYVSPGVLGKLYRATLDPTEDQ 620
            ATLHSMAVDFAKTGAPAE PRAL+P+E+PDFM+R ++ MY S GVLGKLYRAT++ T   
Sbjct: 904  ATLHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQI 963

Query: 619  TPDLIWSEEVAQAAYDHDLVVDGFESLLARAESYKLLYIEKLNVLMNYYGAESEVEIMTG 440
                +W++E+A+ AYDHDL V+GFESL++ AE++K +Y E++++LM+YY  E E EI+TG
Sbjct: 964  RSKFVWTKEMAELAYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTG 1023

Query: 439  NLRNRSMYLERDRKKYREVKDRILISVKDLQNEAKGWFDSSCEEGKRNQ-MASAWYHVTY 263
            N+ N++ +L RD ++Y E+K+RI++SVKDLQ EAK WF SSC +   +Q +ASAWY+VTY
Sbjct: 1024 NMYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTY 1083

Query: 262  HRSYCLDPIKALSFAWIVGDRLLDIKSLNR 173
            H +Y  + + +LSF WIVGD LL IKS N+
Sbjct: 1084 HPNYFEERMNSLSFPWIVGDILLRIKSRNK 1113


>ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
          Length = 1117

 Score = 1323 bits (3423), Expect = 0.0
 Identities = 651/1115 (58%), Positives = 840/1115 (75%), Gaps = 6/1115 (0%)
 Frame = -1

Query: 3493 MAIGEKTTLRISNIPYTVIAKELLDFFESLLGKDTVFACEIFSERKNWKSKGAGRVQFES 3314
            MA  E++TLR+SN+P + IA++LL+F  S LG D+VFA EIF+ERKNWKS+G+GRVQF +
Sbjct: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 3313 LEHLNAVNQLHRQRKLVFQNAHFEISPSMEDIIVRPNLGSNRISGGVLHVGVLEKEDCFG 3134
            LE       L  Q  LVF   +   S   +DI+VRP   +NR   GVLHVG + KE+   
Sbjct: 61   LEAKAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120

Query: 3133 VFQEWGTLKVEVMPERKRVEFWVVDKGETYKMVVQFDDVLATSAWGLEGEATNALLLQLK 2954
            V + W  +K  +MPER+R+EFW+  + E YK+ V F+++L T+   L  E  NALLL+LK
Sbjct: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLK 180

Query: 2953 YAPKVYRKVFGPNVAAKFSADRYHICKENFEFLWVRCTDFSAIKSIGHSSSFCWKFERSI 2774
            YAP++Y+K+ G N+A++FS+ RY +C E++++LWVR T+FS ++S+G S+SFCW+ E  +
Sbjct: 181  YAPRIYKKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240

Query: 2773 SV-DILTSFPLYKGELGVLSLTRLEKYCITSEVVPLIQCPSDS-LNYEILFQLNALVHLQ 2600
               DI + FP YK     + L   E++C TSE+VPLI+    S L YE+ +QLN+LVH+Q
Sbjct: 241  QASDIFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300

Query: 2599 KISFAVVNTXXXXXXXXXXXXSAYTILQKLYMVRSTCYDPVHFIQSQLHDLGKKPKHLPS 2420
            KIS +  N             +A  +LQ+L+ ++  CYDP+ F+++QLH   +  K LP 
Sbjct: 301  KISLSAANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPP 360

Query: 2419 SSETRLIEDNLMSCHRALITPTKIYLLGPEVETANYVVKHYAKHASDFMRVTFVEEDWSK 2240
            SS+ RL  +N+M+C+R L+TP++IY LGPE+ET+NYVVK+++ +ASDFMRVTFVEEDWSK
Sbjct: 361  SSQKRL-SNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSK 419

Query: 2239 LPSDAISTTIGQGLFSKPSRTPLYHRILSILRNGIEIGHKRFEFLAFSASQLRSSSVWMF 2060
            LP+ A++T+I +G+ SKP RT +YHRI+++LR+GI IG KRFEFLAFSASQLRS+SVWMF
Sbjct: 420  LPAGAVTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMF 479

Query: 2059 ASNDTVKTEDIREWMGCFKQFDNVSKCAARMGQLFSSSQQTFIVRPRDVASIHDIEVTND 1880
            AS+D +K E+IR+WMGCF++  ++SKCAARMGQLFSSS QT +V  RDV  I DIEV  D
Sbjct: 480  ASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTD 539

Query: 1879 GVNYCFSDGIGKISPALAKQVAEKCGLNKIPSAFQIRYGGYKGVIAVDHKSYKKLSLRKS 1700
            G++YCFSDGIGKIS + A+QVA+KCG+N IPSAFQIRYGGYKGVIAVD  S++KLSLR S
Sbjct: 540  GIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDS 599

Query: 1699 MKKFTSDNRMLNITSWTEPLPCYLNREVVSLLSTLGIQDEKFEAMLCEQIHLLNEMLTNK 1520
            M KF S N+MLN+T   + +PCYLNRE+ +LLSTLG++DE FEA+  EQ+HLL  MLT+K
Sbjct: 600  MLKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDK 659

Query: 1519 EAALNVLEEM--GDVKSILVKMLLQGYEPNKEPYLNIMLRAYRAYQLSDIRSKSRIFVPK 1346
            + ALNVLE     D  +ILV+ML  GYEPN EPYL++ML+A+     SD+RS+ RIFVPK
Sbjct: 660  DVALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPK 719

Query: 1345 GRVLMGCLDETGILDYGQVYVRVTMTRAELQCGTQTFFKKXXXXXXXXXXXXXXTKNPCL 1166
            GR+L+GCLDETGIL+YGQVY  +T+T++ELQ   Q +F                TKNPCL
Sbjct: 720  GRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILLGKVVVTKNPCL 779

Query: 1165 HPGDIRVLEAVYEPTLE--GFVDCLVFPQKGERPHPNECSGGDLDGDLYFVCWDENLIPM 992
            HPGD+RVLEA++   LE  G VDCL+FPQKG RPH NECSGGDLDGDLYF+ WDENLIP 
Sbjct: 780  HPGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPP 839

Query: 991  HTDTPMDYIARRARITDHDVTLEEIQKFFVDYMINDNLGSISTAHLVHADREPKKARSPK 812
             T+ PMDY  RR RI DHDV LEEIQKFFVDYMIND LG+ISTAHLVHADREPKKA S K
Sbjct: 840  KTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAK 899

Query: 811  CLQLATLHSMAVDFAKTGAPAEFPRALRPKEYPDFMEREDRAMYVSPGVLGKLYRATLDP 632
            CL+LA LHSMAVDFAKTGAPAE PR L+P+E+PDFMER D+ MY+S  VLGKLYRA +  
Sbjct: 900  CLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKS 959

Query: 631  TEDQTPDLIWSEEVAQAAYDHDLVVDGFESLLARAESYKLLYIEKLNVLMNYYGAESEVE 452
             E +   L+WSEE A+A YD+DL VDGFE+ L  AE+YK +YIEK+++LMNYYGAE E E
Sbjct: 960  IEQERSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDE 1019

Query: 451  IMTGNLRNRSMYLERDRKKYREVKDRILISVKDLQNEAKGWFDSSCEEGKRNQMASAWYH 272
            I+ G+LR+R+ YL+RD +KY ++KDRIL+SVK+L+ E K WF++SC+   R  MASAWYH
Sbjct: 1020 ILMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPLNRRMMASAWYH 1079

Query: 271  VTYHRSYCLDPIKALSFAWIVGDRLLDIKSLNRRR 167
            VTYH SY  + +  LSF W V D LL+IK++N +R
Sbjct: 1080 VTYHPSYFKEDMFYLSFPWAVSDVLLNIKAMNSKR 1114