BLASTX nr result
ID: Aconitum21_contig00010804
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum21_contig00010804
(3281 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFO54491.1| reverse transcriptase [Rose yellow vein virus] 265 8e-68
emb|CCG14716.1| ORF V protein [Strawberry vein banding virus] 192 4e-46
ref|NP_043933.1| hypothetical protein [Strawberry vein banding v... 191 8e-46
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu... 164 1e-37
ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus... 164 1e-37
>gb|AFO54491.1| reverse transcriptase [Rose yellow vein virus]
Length = 819
Score = 265 bits (676), Expect = 8e-68
Identities = 145/309 (46%), Positives = 196/309 (63%)
Frame = -1
Query: 2228 WKQMPFGLANTPSIFQRKMNIILSRYEEFCAVYIDDIIIFSRAIDEHFKHLEVIANCLKE 2049
W MPFGLA PSIFQ KM+ +L + ++C VYIDDII+FSR ++EH H+ IA LK+
Sbjct: 508 WLVMPFGLATAPSIFQAKMDNVLEDHHDYCLVYIDDIIVFSRTLEEHKIHVITIAKTLKK 567
Query: 2048 NGIIISKRKMELCKTKIEFLGCEIEKGRVVLQPHVLTKLRDFPEEIKKRKDLQSFLGLIN 1869
NGI+ISK+KMEL TKI FLGCEIE GR++LQ HVL L FP EIK +K+LQSFLG+IN
Sbjct: 568 NGIVISKKKMELGLTKINFLGCEIENGRIILQNHVLENLSKFPSEIKDKKELQSFLGIIN 627
Query: 1868 YVASHHHPEIA*LKAPLQAKLREKNTDWIWTSLDTQVVRDIRNLCNNLPTLSLPTFGDKL 1689
Y ASH+ E+ L+ PLQ KL+ KN W WT D Q+V I+ +C NLP L LP GDKL
Sbjct: 628 YAASHYSIEVTKLRVPLQKKLK-KNYIWSWTEQDKQIVEQIKTICQNLPALELPKNGDKL 686
Query: 1688 LVTTDASDSVILLGQVPYSLEKSLVMVLMNQIIP*LDMLAETGIKPRPIGPPLIRNYGQL 1509
++TTDASD G + + + + + + + + T + + +
Sbjct: 687 VLTTDASDK-HWAGVLQF--YRKIEQEVFEKDLRVSRYCSGTWNQTEQNWSTFGKELRAI 743
Query: 1508 *KSLKCFRIFLLEEFVLQTDSAAVIGFLKKKSLDKDRTAKQVRDKLSILSFFNLTEIKHI 1329
+L+ F++FL E F L +D+ AVI FL KK L++ R+ +++RDKL IL + +KHI
Sbjct: 744 KLALQKFKLFLFEPFTLYSDNLAVINFL-KKDLNEKRSQREIRDKLDILQYQGWMTLKHI 802
Query: 1328 SGAKNHFAD 1302
G KN AD
Sbjct: 803 PGTKNVLAD 811
>emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]
Length = 699
Score = 192 bits (489), Expect = 4e-46
Identities = 119/321 (37%), Positives = 183/321 (57%), Gaps = 12/321 (3%)
Frame = -1
Query: 2228 WKQMPFGLANTPSIFQRKMNIILSR-YEEFCAVYIDDIIIFSRAIDEHFKHLEVIANCLK 2052
W MPFGL P+IFQR M+ LS Y FCAVY+DDII+FS+ DEH H++++ N K
Sbjct: 392 WLVMPFGLKQAPAIFQRHMDESLSNMYPSFCAVYVDDIIVFSKTEDEHLGHVKIVLNRCK 451
Query: 2051 ENGIIISKRKMELCKTKIEFLGCEIEKGRVVLQPHVLTKLRDFPEEIKKRKDLQSFLGLI 1872
GI++SK+K +LCKT I FLG IE+G + +Q H+ L FP+++ R LQ FLGL+
Sbjct: 452 ALGIVLSKKKAQLCKTTINFLGLVIERGNLKVQSHIGLHLTAFPDQLADRNALQRFLGLL 511
Query: 1871 NYVASHHHPEIA*LKAPLQAKLREKNTDWIWTSLDTQVVRDIRNLCNNLPTLSLPTFGDK 1692
NY+ S + P+IA L++PLQ KL+++ T W WT DT+ VR I++L +LP L P+ DK
Sbjct: 512 NYI-SAYFPKIANLRSPLQVKLKKEIT-WSWTEKDTETVRKIKSLVKSLPDLYNPSPEDK 569
Query: 1691 LLVTTDASD---SVILLGQVPYSLEKSLVMVLMNQIIP*LDMLAETGIKPRPIGPPLIRN 1521
++ DASD +L ++P E + A KP +N
Sbjct: 570 PIIECDASDDHWGAVLKAKLPEGKEV-------------ICRYASGTFKPAE------KN 610
Query: 1520 YG-------QL*KSLKCFRIFLLE-EFVLQTDSAAVIGFLKKKSLDKDRTAKQVRDKLSI 1365
Y + K++K FR ++L +F+++TD+ F++ + ++ VR ++++
Sbjct: 611 YHSNEKEILSIIKAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQSRLVRWQMAL 670
Query: 1364 LSFFNLTEIKHISGAKNHFAD 1302
+ +I+H+SG KN AD
Sbjct: 671 REY--SFDIEHVSGQKNVLAD 689
>ref|NP_043933.1| hypothetical protein [Strawberry vein banding virus]
gi|1360613|emb|CAA65970.1| ORF V [Strawberry vein banding
virus]
Length = 708
Score = 191 bits (486), Expect = 8e-46
Identities = 119/321 (37%), Positives = 183/321 (57%), Gaps = 12/321 (3%)
Frame = -1
Query: 2228 WKQMPFGLANTPSIFQRKMNIILSR-YEEFCAVYIDDIIIFSRAIDEHFKHLEVIANCLK 2052
W MPFGL P+IFQR M+ LS Y +FCAVY+DDII+FS+ +EH H++++ N K
Sbjct: 401 WLVMPFGLKQAPAIFQRHMDESLSNMYPQFCAVYVDDIIVFSKTEEEHLGHVKIVLNRCK 460
Query: 2051 ENGIIISKRKMELCKTKIEFLGCEIEKGRVVLQPHVLTKLRDFPEEIKKRKDLQSFLGLI 1872
GI++SK+K +LCKT I FLG IE+G + +Q H+ L FP+++ R LQ FLGL+
Sbjct: 461 ALGIVLSKKKAQLCKTTINFLGLVIERGNLKVQSHIGLHLVAFPDQLSDRNALQRFLGLL 520
Query: 1871 NYVASHHHPEIA*LKAPLQAKLREKNTDWIWTSLDTQVVRDIRNLCNNLPTLSLPTFGDK 1692
NY+ S + P+IA L++PLQ KL+++ T W WT DT+ VR I++L LP L P+ DK
Sbjct: 521 NYI-SAYFPKIANLRSPLQVKLKKEIT-WSWTEKDTETVRKIKSLVKTLPDLYNPSPEDK 578
Query: 1691 LLVTTDASD---SVILLGQVPYSLEKSLVMVLMNQIIP*LDMLAETGIKPRPIGPPLIRN 1521
++ DASD IL ++P E + A KP +N
Sbjct: 579 PIIECDASDDHWGAILKAKLPEGKEV-------------ICRYASGTFKPAE------KN 619
Query: 1520 YG-------QL*KSLKCFRIFLLE-EFVLQTDSAAVIGFLKKKSLDKDRTAKQVRDKLSI 1365
Y + K++K FR ++L +F+++TD+ F++ + ++ VR ++++
Sbjct: 620 YHSNEKEILSIIKAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQSRLVRWQMAL 679
Query: 1364 LSFFNLTEIKHISGAKNHFAD 1302
+ +I+H+SG KN AD
Sbjct: 680 REY--SFDIEHVSGQKNVLAD 698
>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic
protease; Includes: RecName: Full=Endonuclease; Includes:
RecName: Full=Reverse transcriptase
Length = 679
Score = 164 bits (416), Expect = 1e-37
Identities = 104/312 (33%), Positives = 163/312 (52%), Gaps = 3/312 (0%)
Frame = -1
Query: 2228 WKQMPFGLANTPSIFQRKMNIILSRYEEFCAVYIDDIIIFSRAIDEHFKHLEVIANCLKE 2049
W +PFGL PSIFQR M+ + +FC VY+DDI++FS ++H H+ +I +
Sbjct: 369 WNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQ 428
Query: 2048 NGIIISKRKMELCKTKIEFLGCEIEKGRVVLQPHVLTKLRDFPEEIKKRKDLQSFLGLIN 1869
+GII+SK+K +L K KI FLG EI++G Q H+L + FP+ ++ +K LQ FLG++
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1868 YVASHHHPEIA*LKAPLQAKLREKNTDWIWTSLDTQVVRDIRNLCNNLPTLSLPTFGDKL 1689
Y AS + P++A ++ PLQAKL+E N W WT DT ++ ++ P L P +KL
Sbjct: 489 Y-ASDYIPKLAQIRKPLQAKLKE-NVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL 546
Query: 1688 LVTTDASDSVILLGQVPYSLEKSLVMVLMNQIIP*LDMLAETGIKPRPIGPPLIRNYGQL 1509
++ TDASD + + L+ + AE + N
Sbjct: 547 IIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVIN---- 602
Query: 1508 *KSLKCFRIFLLE-EFVLQTDSAAVIGFLKKKSLDKDRTAKQVRDK--LSILSFFNLTEI 1338
++K F I+L F+++TD+ F+ + + +R + LS SF ++
Sbjct: 603 --TIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSF----DV 656
Query: 1337 KHISGAKNHFAD 1302
+HI G NHFAD
Sbjct: 657 EHIKGTDNHFAD 668
>ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus]
gi|130592|sp|P03554.1|POL_CAMVS RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58826|emb|CAA23460.1|
unnamed protein product [Cauliflower mosaic virus]
Length = 679
Score = 164 bits (416), Expect = 1e-37
Identities = 104/312 (33%), Positives = 163/312 (52%), Gaps = 3/312 (0%)
Frame = -1
Query: 2228 WKQMPFGLANTPSIFQRKMNIILSRYEEFCAVYIDDIIIFSRAIDEHFKHLEVIANCLKE 2049
W +PFGL PSIFQR M+ + +FC VY+DDI++FS ++H H+ +I +
Sbjct: 369 WNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQ 428
Query: 2048 NGIIISKRKMELCKTKIEFLGCEIEKGRVVLQPHVLTKLRDFPEEIKKRKDLQSFLGLIN 1869
+GII+SK+K +L K KI FLG EI++G Q H+L + FP+ ++ +K LQ FLG++
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILT 488
Query: 1868 YVASHHHPEIA*LKAPLQAKLREKNTDWIWTSLDTQVVRDIRNLCNNLPTLSLPTFGDKL 1689
Y AS + P++A ++ PLQAKL+E N W WT DT ++ ++ P L P +KL
Sbjct: 489 Y-ASDYIPKLAQIRKPLQAKLKE-NVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL 546
Query: 1688 LVTTDASDSVILLGQVPYSLEKSLVMVLMNQIIP*LDMLAETGIKPRPIGPPLIRNYGQL 1509
++ TDASD + + L+ + AE + N
Sbjct: 547 IIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVIN---- 602
Query: 1508 *KSLKCFRIFLLE-EFVLQTDSAAVIGFLKKKSLDKDRTAKQVRDK--LSILSFFNLTEI 1338
++K F I+L F+++TD+ F+ + + +R + LS SF ++
Sbjct: 603 --TIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSF----DV 656
Query: 1337 KHISGAKNHFAD 1302
+HI G NHFAD
Sbjct: 657 EHIKGTDNHFAD 668