BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00009801
         (548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   122   4e-26
ref|XP_004170865.1| PREDICTED: general transcription factor IIH ...   120   1e-25
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   120   1e-25
ref|XP_002532948.1| RNA polymerase II transcription factor B sub...   119   4e-25
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   110   2e-22

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score =  122 bits (306), Expect = 4e-26
 Identities = 77/148 (52%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
 Frame = -3

Query: 438 MASAPSKLYSDDVSLIVVLIDTNPFFWGGANXXXXXXXXXXXXLGHVLAFXXXXXXXXXX 259
           MA  PSKLYSDDVSL+VVL+DTNPFFW  A+            L HVLAF          
Sbjct: 1   MAPVPSKLYSDDVSLLVVLLDTNPFFWSTAS------LPFSKFLSHVLAFLNSILLINQL 54

Query: 258 XQVVVIAAGVNSCNYIYDSSETTI-VGSENGKMPALSSKVLQKLEEFVVGDEQLN-EQKP 85
            QVVVIA G NSCN+I+DSS        ENG+MPAL S +LQKLEEFV GDE+L+ E   
Sbjct: 55  NQVVVIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLA 114

Query: 84  XXXXXXXXXXXXXXXLCYIQRVFRSGSL 1
                          LCYIQRVFR+G L
Sbjct: 115 AGIGSSLLSGSLSMALCYIQRVFRTGPL 142


>ref|XP_004170865.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 187

 Score =  120 bits (302), Expect = 1e-25
 Identities = 71/147 (48%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
 Frame = -3

Query: 438 MASAPSKLYSDDVSLIVVLIDTNPFFWGGANXXXXXXXXXXXXLGHVLAFXXXXXXXXXX 259
           MASAPSKLY+DDVSL+VVL+DTNPFFW  +             L HVLAF          
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTS------ALPFSKFLSHVLAFLNSILVLNQL 54

Query: 258 XQVVVIAAGVNSCNYIYDSSETTIVGSENGKMPALSSKVLQKLEEFVVGDEQ-LNEQKPX 82
            +VVVI  G  SC Y+Y+SS  +  G E+G+MPAL +++L+ LEEFV+GDEQ + E    
Sbjct: 55  NEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKG 114

Query: 81  XXXXXXXXXXXXXXLCYIQRVFRSGSL 1
                         LCYIQ+VFRSGSL
Sbjct: 115 GTMSSLLSGSLSMALCYIQKVFRSGSL 141


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score =  120 bits (302), Expect = 1e-25
 Identities = 71/147 (48%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
 Frame = -3

Query: 438 MASAPSKLYSDDVSLIVVLIDTNPFFWGGANXXXXXXXXXXXXLGHVLAFXXXXXXXXXX 259
           MASAPSKLY+DDVSL+VVL+DTNPFFW  +             L HVLAF          
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWSTS------ALPFSKFLSHVLAFLNSILVLNQL 54

Query: 258 XQVVVIAAGVNSCNYIYDSSETTIVGSENGKMPALSSKVLQKLEEFVVGDEQ-LNEQKPX 82
            +VVVI  G  SC Y+Y+SS  +  G E+G+MPAL +++L+ LEEFV+GDEQ + E    
Sbjct: 55  NEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKG 114

Query: 81  XXXXXXXXXXXXXXLCYIQRVFRSGSL 1
                         LCYIQ+VFRSGSL
Sbjct: 115 GTMSSLLSGSLSMALCYIQKVFRSGSL 141


>ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
           communis] gi|223527277|gb|EEF29432.1| RNA polymerase II
           transcription factor B subunit, putative [Ricinus
           communis]
          Length = 266

 Score =  119 bits (297), Expect = 4e-25
 Identities = 71/148 (47%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
 Frame = -3

Query: 438 MASAPSKLYSDDVSLIVVLIDTNPFFWGGANXXXXXXXXXXXXLGHVLAFXXXXXXXXXX 259
           MAS PSKLYSDDVSL++VL+DTNPFFW  ++              HVLAF          
Sbjct: 1   MASVPSKLYSDDVSLVMVLLDTNPFFWTTSSLPFSQFL------SHVLAFLNSILLLNQL 54

Query: 258 XQVVVIAAGVNSCNYIYDSSETTIVGSENGKMPALSSKVLQKLEEFVVGDEQL--NEQKP 85
            QVVVIA G NSC+YIYDSS      S+ G++PAL S +LQKLE+F++ DE+L   E+  
Sbjct: 55  NQVVVIANGYNSCDYIYDSSLVMNHSSDEGRIPALYSDLLQKLEDFMIRDEKLGKGEESK 114

Query: 84  XXXXXXXXXXXXXXXLCYIQRVFRSGSL 1
                          LCYIQR+FRSG L
Sbjct: 115 RKIASSLLSGSLSMALCYIQRIFRSGPL 142


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  110 bits (274), Expect = 2e-22
 Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
 Frame = -3

Query: 411 SDDVSLIVVLIDTNPFFWGGANXXXXXXXXXXXXLGHVLAFXXXXXXXXXXXQVVVIAAG 232
           +DDVSL+VVL+DTNPFFW   +              HVLAF           QVVVIA+G
Sbjct: 1   ADDVSLVVVLLDTNPFFWTPPSSLSFSQFL-----SHVLAFVNSILLLNQLNQVVVIASG 55

Query: 231 VNSCNYIYDSS-ETTIVGSENGKMPALSSKVLQKLEEFVVGDEQL-NEQKPXXXXXXXXX 58
            N+C+YIYDSS + + +GSE+G+MP+L S +LQKLEEF++ DE+L  EQ           
Sbjct: 56  YNTCDYIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLS 115

Query: 57  XXXXXXLCYIQRVFRSGSL 1
                 LCYIQRVFRSG L
Sbjct: 116 GSLSMALCYIQRVFRSGPL 134