BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00009162
         (1824 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...   895   0.0  
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar...   863   0.0  
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ...   860   0.0  
ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containi...   852   0.0  
ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|2...   850   0.0  

>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
            chloroplastic [Vitis vinifera]
            gi|296087770|emb|CBI35026.3| unnamed protein product
            [Vitis vinifera]
          Length = 675

 Score =  895 bits (2314), Expect = 0.0
 Identities = 456/561 (81%), Positives = 497/561 (88%), Gaps = 7/561 (1%)
 Frame = +1

Query: 163  KQKRWRISSSSTKHVWRRNPTN-----SSSHPHRNHPQ--AYLDHSVDMDDLISSITQTS 321
            K +   I  S  K VWRR P       SSS  HR   Q   +LDHSVDMD+L++SI+QTS
Sbjct: 44   KHRACFILVSVFKDVWRRLPDETTSLLSSSRQHRPRKQRVVHLDHSVDMDELLASISQTS 103

Query: 322  TPHQLYSLMSLYKDRQLSLRFMVSLLSRESDWQRTLALLDWMMEQALYAPSVFAYNVTIR 501
               +LYSLMS YK RQLS+RFMVSLLSRE DWQR+LALLDW+ E+A Y+PSVFAYNV IR
Sbjct: 104  NEQELYSLMSPYKGRQLSIRFMVSLLSREPDWQRSLALLDWINEEASYSPSVFAYNVVIR 163

Query: 502  NVLRAKQWDLAAGLFEEMRHRGLSPDRFTYSMLITHFGKEGLFDSALSWLQHMERDRIAG 681
            NVLRAKQW+LA GLFEEMR R L+PDR+TYS LITHFGKEG+FDSALSWLQ ME+DR++G
Sbjct: 164  NVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSWLQKMEQDRVSG 223

Query: 682  DLVLYSNLIELSRKLGDYSKAISIFMRLKNSGITPDLVAYNSMINVFGKAMLFREAKQLL 861
            DLVLYSNLIELSRKL DYSKAISIF RLK SGI+PDLVAYNSMINVFGKA LFREA+ LL
Sbjct: 224  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREARLLL 283

Query: 862  YEMREAGVVPDTVSYSTLLSMFVANKRFIEALSIFSEMKQVRCPLDLTTCNIMIDVYGQL 1041
             EMR  GV+PDTVSYSTLLSM+V N +++EALS+FSEM +VRCPLDLTTCN+MIDVYGQL
Sbjct: 284  PEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQL 343

Query: 1042 DMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQGKDIEQNVVTY 1221
            DMAKEADRLFWSMRKMGIEP +VSYNTLLRVYGEAELFGEAIHLFRLMQ KDIEQNVVTY
Sbjct: 344  DMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTY 403

Query: 1222 NTMIKMYGKSLEHEKATNLVQEMQTRGIDPNAVTYSTIISIWAKAGKLDRAAMLFQKLRT 1401
            NTMIK+YGKSLEHEKATNLVQEMQ RGI+PNA+TYSTIISIW KAGKLDRAAMLFQKLR+
Sbjct: 404  NTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRS 463

Query: 1402 SGVEIDQVLYQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWV 1581
            SG+EIDQVLYQTMIVAYERAGLV HAKRLLHELKRPDNIPRETAITILAGAGRIEEATWV
Sbjct: 464  SGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWV 523

Query: 1582 FRQAFLDGEVKDISVFGCMIDLLSRNKKHANVIEVFEKMRAAGYFPDSITIALVLNAYGK 1761
            FRQAF  GEVKDI+VFGCMIDL SRN+KH NVIEVF+KMR AGYFPDS  IALVLNA GK
Sbjct: 524  FRQAFDAGEVKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGK 583

Query: 1762 LREFDKAEIIYKEMQEEGCVF 1824
            LREF+KA+ IYKEM+EEGCVF
Sbjct: 584  LREFEKADAIYKEMEEEGCVF 604



 Score =  109 bits (272), Expect = 3e-21
 Identities = 92/443 (20%), Positives = 183/443 (41%), Gaps = 70/443 (15%)
 Frame = +1

Query: 385  MVSLLSRESDWQRTLALLDWMMEQALYAPSVFAYNVTIRNVLRAKQWDLAAGLFEEMRHR 564
            ++ L  +  D+ + +++   +    + +P + AYN  I    +AK +  A  L  EMR  
Sbjct: 231  LIELSRKLCDYSKAISIFSRLKRSGI-SPDLVAYNSMINVFGKAKLFREARLLLPEMRAG 289

Query: 565  GLSPDRFTYSMLITHFGKEGLFDSALSWLQHMERDRIAGDLVLYSNLIELSRKLGDYSKA 744
            G+ PD  +YS L++ + + G +  ALS    M   R   DL   + +I++  +L    +A
Sbjct: 290  GVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEA 349

Query: 745  ISIFMRLKNSGITPDLVAYNSMINVFGKAMLFREA------------------------- 849
              +F  ++  GI P +V+YN+++ V+G+A LF EA                         
Sbjct: 350  DRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKI 409

Query: 850  ----------KQLLYEMREAGVVPDTVSYSTLLSMFVANKRFIEALSIFSEMKQVRCPLD 999
                        L+ EM+  G+ P+ ++YST++S++    +   A  +F +++     +D
Sbjct: 410  YGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEID 469

Query: 1000 LTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGEAELFGEAIHLFR 1179
                  MI  Y +  +   A RL   +++    P+ +   T + +   A    EA  +FR
Sbjct: 470  QVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRETAITILAGAGRIEEATWVFR 525

Query: 1180 LMQGKDIEQNVVTYNTMIKMY-----------------------------------GKSL 1254
                    +++  +  MI ++                                   GK  
Sbjct: 526  QAFDAGEVKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLR 585

Query: 1255 EHEKATNLVQEMQTRGIDPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQ 1434
            E EKA  + +EM+  G   +   +  ++S++   G       LF++L +      + L+ 
Sbjct: 586  EFEKADAIYKEMEEEGCVFSDEVHFQMLSLYGARGDFQMVDSLFERLDSDPNINKKELHL 645

Query: 1435 TMIVAYERAGLVGHAKRLLHELK 1503
             +   YERA  +  A ++++ ++
Sbjct: 646  VVASIYERANRLNDASQIMNRMR 668



 Score = 97.4 bits (241), Expect = 1e-17
 Identities = 71/321 (22%), Positives = 139/321 (43%), Gaps = 31/321 (9%)
 Frame = +1

Query: 436  LDWMMEQALYAPSVFAYNVTIRNVLRAKQWDLAAGLFEEMRHRGLSPDRFTYSMLITHFG 615
            L W M +    P + +YN  +R    A+ +  A  LF  M+ + +  +  TY+ +I  +G
Sbjct: 352  LFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYG 411

Query: 616  KEGLFDSALSWLQHMERDRIAGDLVLYSNLIELSRKLGDYSKAISIFMRLKNSGITPDLV 795
            K    + A + +Q M+   I  + + YS +I +  K G   +A  +F +L++SGI  D V
Sbjct: 412  KSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQV 471

Query: 796  AYNSMINVFGKAMLFREAKQLLYEMR-------------------------------EAG 882
             Y +MI  + +A L   AK+LL+E++                               +AG
Sbjct: 472  LYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFDAG 531

Query: 883  VVPDTVSYSTLLSMFVANKRFIEALSIFSEMKQVRCPLDLTTCNIMIDVYGQLDMAKEAD 1062
             V D   +  ++ +F  N++    + +F +M+      D     ++++  G+L   ++AD
Sbjct: 532  EVKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLREFEKAD 591

Query: 1063 RLFWSMRKMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQGKDIEQNVVTYNTMIKMY 1242
             ++  M + G   +   +  +L +YG    F     LF  +           +  +  +Y
Sbjct: 592  AIYKEMEEEGCVFSDEVHFQMLSLYGARGDFQMVDSLFERLDSDPNINKKELHLVVASIY 651

Query: 1243 GKSLEHEKATNLVQEMQTRGI 1305
             ++     A+ ++  M+ RGI
Sbjct: 652  ERANRLNDASQIMNRMRERGI 672


>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g39980, chloroplastic; Flags: Precursor
            gi|10176990|dbj|BAB10222.1| unnamed protein product
            [Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 678

 Score =  863 bits (2229), Expect = 0.0
 Identities = 432/553 (78%), Positives = 490/553 (88%), Gaps = 7/553 (1%)
 Frame = +1

Query: 187  SSSTKHVWRRNP---TNSSSHPHRNHPQ----AYLDHSVDMDDLISSITQTSTPHQLYSL 345
            S+  K VWR+ P   T SS    R H +    A+LDH+VDMD+L++SI QT    +L+SL
Sbjct: 52   STQNKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLASIHQTQNEKELFSL 111

Query: 346  MSLYKDRQLSLRFMVSLLSRESDWQRTLALLDWMMEQALYAPSVFAYNVTIRNVLRAKQW 525
            +S YKDRQLS+RFMVSLLSRE+DWQR+LALLDW+ E+A Y PSVFAYNV +RNVLRAKQ+
Sbjct: 112  LSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQF 171

Query: 526  DLAAGLFEEMRHRGLSPDRFTYSMLITHFGKEGLFDSALSWLQHMERDRIAGDLVLYSNL 705
            D+A GLF+EMR R L+PDR+TYS LIT FGKEG+FDSALSWLQ ME+DR++GDLVLYSNL
Sbjct: 172  DIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNL 231

Query: 706  IELSRKLGDYSKAISIFMRLKNSGITPDLVAYNSMINVFGKAMLFREAKQLLYEMREAGV 885
            IELSR+L DYSKAISIF RLK SGITPDLVAYNSMINV+GKA LFREA+ L+ EM EAGV
Sbjct: 232  IELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGV 291

Query: 886  VPDTVSYSTLLSMFVANKRFIEALSIFSEMKQVRCPLDLTTCNIMIDVYGQLDMAKEADR 1065
            +P+TVSYSTLLS++V N +F+EALS+F+EMK+V C LDLTTCNIMIDVYGQLDM KEADR
Sbjct: 292  LPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADR 351

Query: 1066 LFWSMRKMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQGKDIEQNVVTYNTMIKMYG 1245
            LFWS+RKM IEPNVVSYNT+LRVYGEAELFGEAIHLFRLMQ KDIEQNVVTYNTMIK+YG
Sbjct: 352  LFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYG 411

Query: 1246 KSLEHEKATNLVQEMQTRGIDPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQV 1425
            K++EHEKATNLVQEMQ+RGI+PNA+TYSTIISIW KAGKLDRAA LFQKLR+SGVEIDQV
Sbjct: 412  KTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQV 471

Query: 1426 LYQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFLDG 1605
            LYQTMIVAYER GL+GHAKRLLHELK PDNIPRETAITILA AGR EEATWVFRQAF  G
Sbjct: 472  LYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESG 531

Query: 1606 EVKDISVFGCMIDLLSRNKKHANVIEVFEKMRAAGYFPDSITIALVLNAYGKLREFDKAE 1785
            EVKDISVFGCMI+L SRN+++ NVIEVFEKMR AGYFPDS  IA+VLNAYGK REF+KA+
Sbjct: 532  EVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKAD 591

Query: 1786 IIYKEMQEEGCVF 1824
             +Y+EMQEEGCVF
Sbjct: 592  TVYREMQEEGCVF 604



 Score =  112 bits (281), Expect = 3e-22
 Identities = 97/442 (21%), Positives = 191/442 (43%), Gaps = 69/442 (15%)
 Frame = +1

Query: 385  MVSLLSRESDWQRTLALLDWMMEQALYAPSVFAYNVTIRNVLRAKQWDLAAGLFEEMRHR 564
            ++ L  R  D+ + +++   +    +  P + AYN  I    +AK +  A  L +EM   
Sbjct: 231  LIELSRRLCDYSKAISIFSRLKRSGI-TPDLVAYNSMINVYGKAKLFREARLLIKEMNEA 289

Query: 565  GLSPDRFTYSMLITHFGKEGLFDSALSWLQHMERDRIAGDLVLYSNLIELSRKLGDYSKA 744
            G+ P+  +YS L++ + +   F  ALS    M+    A DL   + +I++  +L    +A
Sbjct: 290  GVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEA 349

Query: 745  ISIFMRLKNSGITPDLVAYNSMINVFGKAMLFREA------------------------- 849
              +F  L+   I P++V+YN+++ V+G+A LF EA                         
Sbjct: 350  DRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKI 409

Query: 850  ----------KQLLYEMREAGVVPDTVSYSTLLSMFVANKRFIEALSIFSEMKQVRCPLD 999
                        L+ EM+  G+ P+ ++YST++S++    +   A ++F +++     +D
Sbjct: 410  YGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEID 469

Query: 1000 LTTCNIMIDVYGQLDMAKEADRLF----------------------------WSMRKM-- 1089
                  MI  Y ++ +   A RL                             W  R+   
Sbjct: 470  QVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFE 529

Query: 1090 -GIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQ--GKDIEQNVVTYNTMIKMYGKSLEH 1260
             G   ++  +  ++ +Y   + +   I +F  M+  G   + NV+    ++  YGK  E 
Sbjct: 530  SGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAM--VLNAYGKQREF 587

Query: 1261 EKATNLVQEMQTRG-IDPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQT 1437
            EKA  + +EMQ  G + P+ V +  ++S+++     +    LFQ+L +      + L+  
Sbjct: 588  EKADTVYREMQEEGCVFPDEVHFQ-MLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLV 646

Query: 1438 MIVAYERAGLVGHAKRLLHELK 1503
            +   YERA  +  A R+++ ++
Sbjct: 647  VAALYERADKLNDASRVMNRMR 668


>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297316573|gb|EFH46996.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 680

 Score =  860 bits (2223), Expect = 0.0
 Identities = 431/553 (77%), Positives = 489/553 (88%), Gaps = 7/553 (1%)
 Frame = +1

Query: 187  SSSTKHVWRRNP---TNSSSHPHRNHPQ----AYLDHSVDMDDLISSITQTSTPHQLYSL 345
            S+ TK VWR+ P   T SS    R H +    A+LDH+VDMD+L++SI QT    +L+SL
Sbjct: 54   STQTKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLASIHQTQNEKELFSL 113

Query: 346  MSLYKDRQLSLRFMVSLLSRESDWQRTLALLDWMMEQALYAPSVFAYNVTIRNVLRAKQW 525
            +S YKDRQLS+RFMVSLLSRE+DWQR+LALLDW+ E+A Y PSVFAYNV +RNVLRAKQ+
Sbjct: 114  LSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQF 173

Query: 526  DLAAGLFEEMRHRGLSPDRFTYSMLITHFGKEGLFDSALSWLQHMERDRIAGDLVLYSNL 705
             +A GLF+EMR R L+PDR+TYS LIT FGKEG+FDSALSWLQ ME+DR++GDLVLYSNL
Sbjct: 174  GIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNL 233

Query: 706  IELSRKLGDYSKAISIFMRLKNSGITPDLVAYNSMINVFGKAMLFREAKQLLYEMREAGV 885
            IELSR+L DYSKAISIF RLK SGITPDLVAYNSMINV+GKA LF+EA+ L+ EM EAGV
Sbjct: 234  IELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGV 293

Query: 886  VPDTVSYSTLLSMFVANKRFIEALSIFSEMKQVRCPLDLTTCNIMIDVYGQLDMAKEADR 1065
             P+TVSYSTLLS++V N +F+EALS+F+EMK+V CPLDLTTCNIMIDVYGQLDM KEADR
Sbjct: 294  SPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADR 353

Query: 1066 LFWSMRKMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQGKDIEQNVVTYNTMIKMYG 1245
            LFWS+RKM IEPNVVSYNT+LRVYGEAELFGEAIHLFRLMQ KDIEQNVVTYNTMIK+YG
Sbjct: 354  LFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYG 413

Query: 1246 KSLEHEKATNLVQEMQTRGIDPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQV 1425
            K++EHEKATNLVQEMQ+RGI+PNA+TYSTIISIW KAGKLDRAA LFQKLR+SGVEIDQV
Sbjct: 414  KTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQV 473

Query: 1426 LYQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFLDG 1605
            LYQTMIVAYER GL+GHAKRLLHELK PDNIPRETAITILA AG  EEATWVFRQAF  G
Sbjct: 474  LYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFESG 533

Query: 1606 EVKDISVFGCMIDLLSRNKKHANVIEVFEKMRAAGYFPDSITIALVLNAYGKLREFDKAE 1785
            EVKDISVFGCMI+L SRN+++ NVIEVFEKMR AGYFPDS  IA+VLNAYGK REF+KA+
Sbjct: 534  EVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKAD 593

Query: 1786 IIYKEMQEEGCVF 1824
             +Y+EMQEEGCVF
Sbjct: 594  TVYREMQEEGCVF 606



 Score =  113 bits (282), Expect = 2e-22
 Identities = 93/440 (21%), Positives = 188/440 (42%), Gaps = 67/440 (15%)
 Frame = +1

Query: 385  MVSLLSRESDWQRTLALLDWMMEQALYAPSVFAYNVTIRNVLRAKQWDLAAGLFEEMRHR 564
            ++ L  R  D+ + +++   +    +  P + AYN  I    +AK +  A  L +EM   
Sbjct: 233  LIELSRRLCDYSKAISIFSRLKRSGI-TPDLVAYNSMINVYGKAKLFKEARVLIKEMNEA 291

Query: 565  GLSPDRFTYSMLITHFGKEGLFDSALSWLQHM--------------------------ER 666
            G+SP+  +YS L++ + +   F  ALS    M                          E 
Sbjct: 292  GVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEA 351

Query: 667  DR---------IAGDLVLYSNLIELSRKLGDYSKAISIFMRLKNSGITPDLVAYNSMINV 819
            DR         I  ++V Y+ ++ +  +   + +AI +F  ++   I  ++V YN+MI +
Sbjct: 352  DRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKI 411

Query: 820  FGKAMLFREAKQLLYEMREAGVVPDTVSYSTLLSMFVANKRFIEALSIFSEMKQVRCPLD 999
            +GK M   +A  L+ EM+  G+ P+ ++YST++S++    +   A ++F +++     +D
Sbjct: 412  YGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEID 471

Query: 1000 LTTCNIMIDVYGQLDMAKEADRLF----------------------------WSMRKM-- 1089
                  MI  Y ++ +   A RL                             W  R+   
Sbjct: 472  QVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFE 531

Query: 1090 -GIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQGKDIEQNVVTYNTMIKMYGKSLEHEK 1266
             G   ++  +  ++ +Y   + +   I +F  M+      +      ++  YGK  E EK
Sbjct: 532  SGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEK 591

Query: 1267 ATNLVQEMQTRG-IDPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMI 1443
            A  + +EMQ  G + P+ V +  ++S+++     +    LF++L +      + L+  + 
Sbjct: 592  ADTVYREMQEEGCVFPDEVHFQ-MLSLYSSKKDFEMVESLFERLESDPNVNSKELHLVVA 650

Query: 1444 VAYERAGLVGHAKRLLHELK 1503
              YERA  +  A R+++ ++
Sbjct: 651  ALYERADKLNDASRVMNRMR 670


>ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
            chloroplastic-like [Cucumis sativus]
            gi|449530101|ref|XP_004172035.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g39980,
            chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  852 bits (2201), Expect = 0.0
 Identities = 425/558 (76%), Positives = 486/558 (87%), Gaps = 11/558 (1%)
 Frame = +1

Query: 184  SSSSTKHVWRRNPTNSSSHP-----------HRNHPQAYLDHSVDMDDLISSITQTSTPH 330
            SSS++K +WRR   +  S              R    ++LDHS+DMD+L++SI QT    
Sbjct: 51   SSSTSKDIWRRQTPSEKSTTTLLPQKYQRSGRRPRESSHLDHSIDMDELLASIGQTKNEQ 110

Query: 331  QLYSLMSLYKDRQLSLRFMVSLLSRESDWQRTLALLDWMMEQALYAPSVFAYNVTIRNVL 510
            +LYS++S YK R+LS+RFMVSLLSRESDWQR+LA+LDW+ E+ALY PSV+AYNV +RNVL
Sbjct: 111  ELYSVLSPYKGRELSMRFMVSLLSRESDWQRSLAILDWINEEALYTPSVYAYNVVLRNVL 170

Query: 511  RAKQWDLAAGLFEEMRHRGLSPDRFTYSMLITHFGKEGLFDSALSWLQHMERDRIAGDLV 690
            RAKQW+LA GLF+EMR R L+ DR+TYS LIT+FGKEG+FD+ALSWLQ ME+DR++GDLV
Sbjct: 171  RAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAALSWLQKMEQDRVSGDLV 230

Query: 691  LYSNLIELSRKLGDYSKAISIFMRLKNSGITPDLVAYNSMINVFGKAMLFREAKQLLYEM 870
            LYSNLIELSRKL DYSKAISIF RLK SGITPD+VAYN+MINVFGKA LFREA+ LL EM
Sbjct: 231  LYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVFGKAKLFREARFLLKEM 290

Query: 871  REAGVVPDTVSYSTLLSMFVANKRFIEALSIFSEMKQVRCPLDLTTCNIMIDVYGQLDMA 1050
            R   V+PDTVSYSTLL+MFV N++F+EALS+ SEMK+V CPLDLTTCNIMIDVYGQLDM 
Sbjct: 291  RAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDMV 350

Query: 1051 KEADRLFWSMRKMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQGKDIEQNVVTYNTM 1230
            KEADRLFW MRK+GIEPNVVSYNT+LRVYGEAELFGEAIHLFRLMQ K+I+QNVVTYNTM
Sbjct: 351  KEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTM 410

Query: 1231 IKMYGKSLEHEKATNLVQEMQTRGIDPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGV 1410
            IK+YGK+LEHEKATNLVQ+MQ RGI+PNA+TYSTIISIW KAGKLDR+AMLFQKLR+SG 
Sbjct: 411  IKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGA 470

Query: 1411 EIDQVLYQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQ 1590
            EIDQVLYQTMIVAYE+AGLVGHAKRLLHELK+PDNIPR TAITILA AGRIEEATWVFRQ
Sbjct: 471  EIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQPDNIPRTTAITILAKAGRIEEATWVFRQ 530

Query: 1591 AFLDGEVKDISVFGCMIDLLSRNKKHANVIEVFEKMRAAGYFPDSITIALVLNAYGKLRE 1770
            AF  GE+KDISVF CMIDL SRNKKH NV+EVFEKMR  G+FP+S  IALVLNAYGKLR+
Sbjct: 531  AFDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVIALVLNAYGKLRD 590

Query: 1771 FDKAEIIYKEMQEEGCVF 1824
            FD A+ +Y EMQEEGCVF
Sbjct: 591  FDTADALYMEMQEEGCVF 608



 Score =  112 bits (280), Expect = 3e-22
 Identities = 80/323 (24%), Positives = 153/323 (47%), Gaps = 3/323 (0%)
 Frame = +1

Query: 436  LDWMMEQALYAPSVFAYNVTIRNVLRAKQWDLAAGLFEEMRHRGLSPDRFTYSMLITHFG 615
            L W M +    P+V +YN  +R    A+ +  A  LF  M+ + +  +  TY+ +I  +G
Sbjct: 356  LFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYG 415

Query: 616  KEGLFDSALSWLQHMERDRIAGDLVLYSNLIELSRKLGDYSKAISIFMRLKNSGITPDLV 795
            K    + A + +Q M++  I  + + YS +I +  K G   ++  +F +L++SG   D V
Sbjct: 416  KTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQV 475

Query: 796  AYNSMINVFGKAMLFREAKQLLYEMREAGVVPDTVSYSTLLSMFVANKRFIEALSIFSEM 975
             Y +MI  + KA L   AK+LL+E+++    PD +  +T +++     R  EA  +F + 
Sbjct: 476  LYQTMIVAYEKAGLVGHAKRLLHELKQ----PDNIPRTTAITILAKAGRIEEATWVFRQA 531

Query: 976  KQVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGEAELF 1155
                   D++    MID++ +    K    +F  MR +G  PN      +L  YG+   F
Sbjct: 532  FDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVIALVLNAYGKLRDF 591

Query: 1156 GEAIHLFRLMQGKDIEQNVVTYNTMIKMYGKSLEHEKATNLVQEMQTRGIDPN---AVTY 1326
              A  L+  MQ +        +  M+ +YG   ++++  +L + + +   DPN      +
Sbjct: 592  DTADALYMEMQEEGCVFTDEVHFQMLSLYGARNDYKRLESLFERLDS---DPNINKKELH 648

Query: 1327 STIISIWAKAGKLDRAAMLFQKL 1395
              + SI+ +  +   A+ +  ++
Sbjct: 649  LVVASIYERGNRSKDASRIINRM 671


>ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|222867031|gb|EEF04162.1|
            predicted protein [Populus trichocarpa]
          Length = 629

 Score =  850 bits (2195), Expect = 0.0
 Identities = 428/534 (80%), Positives = 474/534 (88%)
 Frame = +1

Query: 223  TNSSSHPHRNHPQAYLDHSVDMDDLISSITQTSTPHQLYSLMSLYKDRQLSLRFMVSLLS 402
            T  S  P R      L   VDM +L+ SI+QT    QLYSL+S YKDRQLS+RFMVS++S
Sbjct: 26   TTISRKPRRRARSLLL---VDMTELLLSISQTQNELQLYSLLSPYKDRQLSIRFMVSVIS 82

Query: 403  RESDWQRTLALLDWMMEQALYAPSVFAYNVTIRNVLRAKQWDLAAGLFEEMRHRGLSPDR 582
            RESDWQR+LALLDW+ + A Y+PSVFAYNV +RNVLRAKQWD A GLF+EMR+R L+PDR
Sbjct: 83   RESDWQRSLALLDWINDIARYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDR 142

Query: 583  FTYSMLITHFGKEGLFDSALSWLQHMERDRIAGDLVLYSNLIELSRKLGDYSKAISIFMR 762
            +TYS LITHFGK G+FD++L WLQ ME+DR++GDLVLYSNLIELSRKL DYSKAISIFMR
Sbjct: 143  YTYSTLITHFGKAGMFDASLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMR 202

Query: 763  LKNSGITPDLVAYNSMINVFGKAMLFREAKQLLYEMREAGVVPDTVSYSTLLSMFVANKR 942
            LK SGI PDLVAYNSMINVFGKA LFREAK L+ EMRE GV+PDTVSYSTLLS++V N++
Sbjct: 203  LKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEK 262

Query: 943  FIEALSIFSEMKQVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNT 1122
            F+EALS+F+EM + +CPLDLTTCN+MIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNT
Sbjct: 263  FVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNT 322

Query: 1123 LLRVYGEAELFGEAIHLFRLMQGKDIEQNVVTYNTMIKMYGKSLEHEKATNLVQEMQTRG 1302
            LLRVYGE ELFGEAIHLFRLMQ KDIEQNVVTYNTMIK+YGKSLEHEKATNL+QEMQ RG
Sbjct: 323  LLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRG 382

Query: 1303 IDPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGHAK 1482
            I+PNA+TYSTIISIW KAGKLDRAAMLFQKLR+SGVEIDQVLYQTMIVAYER+GLV HAK
Sbjct: 383  IEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAK 442

Query: 1483 RLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFLDGEVKDISVFGCMIDLLSRNK 1662
            RLLHELK PD+IPRETAI ILA AGRIEEATWVFRQAF  GEVKDISVFGCM+DL SRN+
Sbjct: 443  RLLHELKHPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNR 502

Query: 1663 KHANVIEVFEKMRAAGYFPDSITIALVLNAYGKLREFDKAEIIYKEMQEEGCVF 1824
            K ANVIEVFEKMR AGYFPDS  IALVLNAYGKL EF+KA+ +YKEMQEE CVF
Sbjct: 503  KPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQEEECVF 556



 Score =  110 bits (274), Expect = 2e-21
 Identities = 78/328 (23%), Positives = 151/328 (46%), Gaps = 3/328 (0%)
 Frame = +1

Query: 436  LDWMMEQALYAPSVFAYNVTIRNVLRAKQWDLAAGLFEEMRHRGLSPDRFTYSMLITHFG 615
            L W M +    P+V +YN  +R     + +  A  LF  M+ + +  +  TY+ +I  +G
Sbjct: 304  LFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYG 363

Query: 616  KEGLFDSALSWLQHMERDRIAGDLVLYSNLIELSRKLGDYSKAISIFMRLKNSGITPDLV 795
            K    + A + +Q M+   I  + + YS +I +  K G   +A  +F +L++SG+  D V
Sbjct: 364  KSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQV 423

Query: 796  AYNSMINVFGKAMLFREAKQLLYEMREAGVVPDTVSYSTLLSMFVANKRFIEALSIFSEM 975
             Y +MI  + ++ L   AK+LL+E++     PD++   T + +     R  EA  +F + 
Sbjct: 424  LYQTMIVAYERSGLVAHAKRLLHELKH----PDSIPRETAIKILARAGRIEEATWVFRQA 479

Query: 976  KQVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGEAELF 1155
                   D++    M+D++ +         +F  MR  G  P+      +L  YG+   F
Sbjct: 480  FDAGEVKDISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEF 539

Query: 1156 GEAIHLFRLMQGKDIEQNVVTYNTMIKMYGKSLEHEKATNLVQEMQTRGIDPN---AVTY 1326
             +A  L++ MQ ++       +  M+ +YG   +      L + + +   DPN      +
Sbjct: 540  EKADALYKEMQEEECVFPDEVHFQMLSLYGARKDFMMIEALFERLDS---DPNINKKELH 596

Query: 1327 STIISIWAKAGKLDRAAMLFQKLRTSGV 1410
              + SI+ +  +L+ A+ +  ++   GV
Sbjct: 597  LVVASIYERKNRLNDASRIMNRMSKGGV 624