BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00006469
         (1867 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26421.3| unnamed protein product [Vitis vinifera]              578   e-162
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   577   e-162
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      561   e-157
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   559   e-157
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   554   e-155

>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  578 bits (1491), Expect = e-162
 Identities = 308/412 (74%), Positives = 346/412 (83%), Gaps = 7/412 (1%)
 Frame = +2

Query: 488  PRSLDPSLY----DYHYDSPSLEALLVLQKSMLEKQWELSCEPKSRNKFGQVVGSGVSAR 655
            P + DP L     +   +   +EA L+LQKSMLEKQW LS   K+R K  +V  SG SAR
Sbjct: 154  PSTADPDLSSSSSEVEDEEYLVEAFLLLQKSMLEKQWNLSF--KARQKRREVTCSGTSAR 211

Query: 656  ERR--SMKRCVDPNSDAKRNHIGLIVSREVLG-SNRTKSYVKGVFSEELLTHAQVVHLSK 826
            +RR    KR ++  S ++         R  LG  NR K YVKGV SEELLTHAQVV LS 
Sbjct: 212  QRRISGRKRVMNEKSKSR--------VRAALGVENRLKGYVKGVVSEELLTHAQVVLLSN 263

Query: 827  KIKAGLLLEDYKSKLNKRLGYDPSDEQLATSLRISRAELQSKRIECSLAREKLAMSNVRL 1006
            KIKAGLLLED+KS+L +R+G +P+DEQ+A SLR+SRAELQSK IECSLAREKLAMSNVRL
Sbjct: 264  KIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRL 323

Query: 1007 VMSVAKRYENMGVEMADLVQGGLIGLVRGIEKFDSSKGFKISTYVYWWIRQGVSRSLIEN 1186
            VMS+A+RY+NMG EMADLVQGGLIGL+RGIEKFDSSKGFKISTYVYWWIRQGVSR+L+EN
Sbjct: 324  VMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 383

Query: 1187 SRTLRLPAHLHERLSLIRNAKIRLEGKGITPSVEKIAESLNMSQKKVKNATEAISKVFSL 1366
            SRTLRLP+HLHERLSLIRNAKIRLE KGITPS+++IAE LNMSQKKV+NATEAISKVFSL
Sbjct: 384  SRTLRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSL 443

Query: 1367 DREAFPSLNGLPGETLHSYIADKRLENNPWHGVDEWILKDEVNNLIKTTLREREQDIVRL 1546
            DREAFPSLNGLPGETLHSYIAD RLENNPWHGVDEW LKDEVN LI TTL ERE+DI+RL
Sbjct: 444  DREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRL 503

Query: 1547 YYGLDEECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARRRSLDAMLVKY 1702
            YYGLD ECLTWEDIS+RIGLSRERVRQVGLVALEKLK+AAR+  ++AMLVKY
Sbjct: 504  YYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 555


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  577 bits (1486), Expect = e-162
 Identities = 309/423 (73%), Positives = 347/423 (82%), Gaps = 18/423 (4%)
 Frame = +2

Query: 488  PRSLDPSLY----DYHYDSPSLEALLVLQKSMLEKQWELSCEP-----------KSRNKF 622
            P + DP L     +   +   +EA L+LQKSMLEKQW LS E            K+R K 
Sbjct: 83   PSTADPDLSSSSSEVEDEEYLVEAFLLLQKSMLEKQWNLSFEEEEEEEEEDMGKKARQKR 142

Query: 623  GQVVGSGVSARERR--SMKRCVDPNSDAKRNHIGLIVSREVLG-SNRTKSYVKGVFSEEL 793
             +V  SG SAR+RR    KR ++  S ++         R  LG  NR K YVKGV SEEL
Sbjct: 143  REVTCSGTSARQRRISGRKRVMNEKSKSR--------VRAALGVENRLKGYVKGVVSEEL 194

Query: 794  LTHAQVVHLSKKIKAGLLLEDYKSKLNKRLGYDPSDEQLATSLRISRAELQSKRIECSLA 973
            LTHAQVV LS KIKAGLLLED+KS+L +R+G +P+DEQ+A SLR+SRAELQSK IECSLA
Sbjct: 195  LTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLA 254

Query: 974  REKLAMSNVRLVMSVAKRYENMGVEMADLVQGGLIGLVRGIEKFDSSKGFKISTYVYWWI 1153
            REKLAMSNVRLVMS+A+RY+NMG EMADLVQGGLIGL+RGIEKFDSSKGFKISTYVYWWI
Sbjct: 255  REKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 314

Query: 1154 RQGVSRSLIENSRTLRLPAHLHERLSLIRNAKIRLEGKGITPSVEKIAESLNMSQKKVKN 1333
            RQGVSR+L+ENSRTLRLP+HLHERLSLIRNAKIRLE KGITPS+++IAE LNMSQKKV+N
Sbjct: 315  RQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRN 374

Query: 1334 ATEAISKVFSLDREAFPSLNGLPGETLHSYIADKRLENNPWHGVDEWILKDEVNNLIKTT 1513
            ATEAISKVFSLDREAFPSLNGLPGETLHSYIAD RLENNPWHGVDEW LKDEVN LI TT
Sbjct: 375  ATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTT 434

Query: 1514 LREREQDIVRLYYGLDEECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARRRSLDAML 1693
            L ERE+DI+RLYYGLD ECLTWEDIS+RIGLSRERVRQVGLVALEKLK+AAR+  ++AML
Sbjct: 435  LGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAML 494

Query: 1694 VKY 1702
            VKY
Sbjct: 495  VKY 497


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  561 bits (1445), Expect = e-157
 Identities = 294/403 (72%), Positives = 335/403 (83%), Gaps = 11/403 (2%)
 Frame = +2

Query: 527  DSPSLEALLVLQKSMLEKQWELSCEPKSRN-----KFGQVVGSGVSARERR--SMKRCVD 685
            +  S+E LL+LQKSMLEKQW LS E    N     K  Q+  SG SAR RR  + KR + 
Sbjct: 101  EEDSVEVLLLLQKSMLEKQWNLSAEKAMTNENNCKKKMQITCSGTSARRRRMDTRKRDLL 160

Query: 686  PN----SDAKRNHIGLIVSREVLGSNRTKSYVKGVFSEELLTHAQVVHLSKKIKAGLLLE 853
            P     SD+    +  ++  E+L  NR+K Y+ GV  +ELLTH +VV LSKKIK GL LE
Sbjct: 161  PKNSATSDSSSKRLRSVIGPELL-QNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLE 219

Query: 854  DYKSKLNKRLGYDPSDEQLATSLRISRAELQSKRIECSLAREKLAMSNVRLVMSVAKRYE 1033
            + KS+L +RLG +PSD+QLA SL+ISRA+L+S  IECSLAREKLAMSNVRLVMS+A+RY+
Sbjct: 220  EQKSRLKERLGCEPSDDQLAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYD 279

Query: 1034 NMGVEMADLVQGGLIGLVRGIEKFDSSKGFKISTYVYWWIRQGVSRSLIENSRTLRLPAH 1213
              G EMADL+QGGLIGL+RGIEKFD S+GFKISTYVYWWIRQGVSR+L+ENSRTLRLP H
Sbjct: 280  TNGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIH 339

Query: 1214 LHERLSLIRNAKIRLEGKGITPSVEKIAESLNMSQKKVKNATEAISKVFSLDREAFPSLN 1393
            LHERLSLIRNAKI+L+  GITPS+EKIAE LNMSQKKV+NATEA SKVFSLDREAFPSLN
Sbjct: 340  LHERLSLIRNAKIKLKENGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLN 399

Query: 1394 GLPGETLHSYIADKRLENNPWHGVDEWILKDEVNNLIKTTLREREQDIVRLYYGLDEECL 1573
            GLPGETLHSYIAD RLEN PWHGVDEW+LKDEVNNLI +TLRERE++IVRLYYGLD ECL
Sbjct: 400  GLPGETLHSYIADNRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECL 459

Query: 1574 TWEDISRRIGLSRERVRQVGLVALEKLKHAARRRSLDAMLVKY 1702
            TWEDISRRIGLSRERVRQVGLVALEKLKHAAR+R LDAMLVK+
Sbjct: 460  TWEDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAMLVKH 502


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  559 bits (1441), Expect = e-157
 Identities = 299/404 (74%), Positives = 337/404 (83%), Gaps = 15/404 (3%)
 Frame = +2

Query: 536  SLEALLVLQKSMLEKQWELSCEP---------KSRNKFGQVVGSGVSARERR---SMKRC 679
            S+EALL+LQKSMLEKQW LS E          KS+ K   V  SGVSAR+RR     K  
Sbjct: 107  SVEALLLLQKSMLEKQWNLSFERTDSSDSPSRKSQKKI-PVTCSGVSARQRRINIRRKNL 165

Query: 680  VDPNSDAKRN---HIGLIVSREVLGSNRTKSYVKGVFSEELLTHAQVVHLSKKIKAGLLL 850
                   + N    +   VS E+L  NR K YVKGV SEELL+HA+VV LS+ IKAGL L
Sbjct: 166  SQSKFTVQANVFKQLKSAVSPELL-QNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSL 224

Query: 851  EDYKSKLNKRLGYDPSDEQLATSLRISRAELQSKRIECSLAREKLAMSNVRLVMSVAKRY 1030
            ED+KS+L +RLG DPSDEQ+ATSL+ISRAELQSK I CSLAREKLAMSNVRLVMS+A+RY
Sbjct: 225  EDHKSRLKERLGCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRY 284

Query: 1031 ENMGVEMADLVQGGLIGLVRGIEKFDSSKGFKISTYVYWWIRQGVSRSLIENSRTLRLPA 1210
            +NMG EMADLVQGGLIGL+RGIEKFDSSKGF+ISTYVYWWIRQGVSR+L+ENSRTLRLP 
Sbjct: 285  DNMGAEMADLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPN 344

Query: 1211 HLHERLSLIRNAKIRLEGKGITPSVEKIAESLNMSQKKVKNATEAISKVFSLDREAFPSL 1390
            HLHERL LIRNAKIRLE KG+TPS+++IAESLN+SQKKV+NATEA+SKVFSLDREAFPSL
Sbjct: 345  HLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSL 404

Query: 1391 NGLPGETLHSYIADKRLENNPWHGVDEWILKDEVNNLIKTTLREREQDIVRLYYGLDEEC 1570
            NGLPGET HSYIAD  LENNPWHGVD+W LKDEVN LI  TL+EREQ+I+RLYYGLD E 
Sbjct: 405  NGLPGETHHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNES 464

Query: 1571 LTWEDISRRIGLSRERVRQVGLVALEKLKHAARRRSLDAMLVKY 1702
            LTWEDIS+RIGLSRERVRQVGLVALEKLKHAAR++ L+AMLVK+
Sbjct: 465  LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  554 bits (1427), Expect = e-155
 Identities = 290/402 (72%), Positives = 335/402 (83%), Gaps = 13/402 (3%)
 Frame = +2

Query: 536  SLEALLVLQKSMLEKQWELSCE--------PKSRNKFGQVVGSGVSARERRSMKRCVDPN 691
            S+EALL+LQKSMLEKQW LS E         K  NK   V  SGVSAR+RR   R  + N
Sbjct: 108  SVEALLLLQKSMLEKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQN 167

Query: 692  -----SDAKRNHIGLIVSREVLGSNRTKSYVKGVFSEELLTHAQVVHLSKKIKAGLLLED 856
                 S +        VS   L  NR K YVKGV S+E+L H +VV LS+ I+AGL  ED
Sbjct: 168  QSKFMSQSSDFKFLRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFED 227

Query: 857  YKSKLNKRLGYDPSDEQLATSLRISRAELQSKRIECSLAREKLAMSNVRLVMSVAKRYEN 1036
            +KS+L +RLG +PSDEQ+A SLRISRA+LQSK I+CSLAREKLAMSNVRLVMS+A++Y+N
Sbjct: 228  HKSRLKERLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDN 287

Query: 1037 MGVEMADLVQGGLIGLVRGIEKFDSSKGFKISTYVYWWIRQGVSRSLIENSRTLRLPAHL 1216
            MG EMADLVQGGLIGL+RGIEKFDSSKGFKISTYVYWWIRQGVSR+L++NSRTLRLP HL
Sbjct: 288  MGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHL 347

Query: 1217 HERLSLIRNAKIRLEGKGITPSVEKIAESLNMSQKKVKNATEAISKVFSLDREAFPSLNG 1396
            HERL LIRNAKIRLE KG+TPS+++IAESLNMSQ+KV+NATEAISKVFSLDREAFPSLNG
Sbjct: 348  HERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNG 407

Query: 1397 LPGETLHSYIADKRLENNPWHGVDEWILKDEVNNLIKTTLREREQDIVRLYYGLDEECLT 1576
            LPGET HSYIAD R ENNPWHGVDEW LK+EVN LI +TL+ERE++I+RLY+GLD+ECLT
Sbjct: 408  LPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLT 467

Query: 1577 WEDISRRIGLSRERVRQVGLVALEKLKHAARRRSLDAMLVKY 1702
            WEDIS+R+GLSRERVRQVGLVALEKLKHAAR+R+ +AMLVK+
Sbjct: 468  WEDISKRMGLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509