BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00006162
         (825 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]    97   1e-31
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    95   4e-28
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...    87   2e-27
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    92   3e-27
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...    85   3e-27

>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
          Length = 950

 Score = 97.1 bits (240), Expect(2) = 1e-31
 Identities = 52/128 (40%), Positives = 80/128 (62%), Gaps = 2/128 (1%)
 Frame = +3

Query: 6   MKVGKVEIEKFDGQNDFSHWRMQMHNLLVTQDLSVALDGK--MNQGDMSEDDWKVLDAKA 179
           M   K E+EKF+G NDF+ W+++M  LLV Q  + A++G+  +  G  + +  +V+ ++A
Sbjct: 1   MSSQKFEVEKFNGSNDFTLWKLKMKALLVQQKCAQAIEGEETLPVGLTAVEKEEVV-SRA 59

Query: 180 RAYILLCLNRDVAFMCSGEATAAGVWLKLEQNFMTKSLTNRIYRKTRLYTCKMEEGTPIR 359
            + ILL L  +V    + E TA G+W K E  +  KSLTNR+Y+K +L+T KM EG  +R
Sbjct: 60  HSAILLSLADEVLREVADETTAVGLWRKFESKYQKKSLTNRLYQKRQLHTLKMSEGMQVR 119

Query: 360 THITNFER 383
            H+ NF R
Sbjct: 120 DHLNNFNR 127



 Score = 66.2 bits (160), Expect(2) = 1e-31
 Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
 Frame = +1

Query: 493 DLRDVEVKVEDEDQAILLLLSLPKSYEAIVQTLTLLDSTHLSFEEVRTALLSDELRKKAS 672
           DL  V VKVE+EDQA++LL SLP SYE  V T+ +     +S  +V+ AL S EL+K  S
Sbjct: 131 DLNGVGVKVEEEDQAMILLCSLPSSYENFVDTM-MYGRBSISXNDVKDALQSKELQKLVS 189

Query: 673 GGDKDSKE--------QAQALFVRXXXXXXXXXXXXMRCFKCGEEGHLKAECPNKK 816
           G ++ S E        ++                  MRCF   E+GH +  CP ++
Sbjct: 190 GSEEGSVETGLTVSRGRSMERNGGGRSKSXSKSKAAMRCFHXKEKGHFRKNCPQRQ 245


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score = 94.7 bits (234), Expect(2) = 4e-28
 Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
 Frame = +3

Query: 18  KVEIEKFDGQNDFSHWRMQMHNLLVTQDLSVALDGKMNQGD-MSEDDWKVLDAKARAYIL 194
           K E+ KF+G N FS W+ +M +LL+ Q L   LD    + D M  +DW  LD +A + I 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 195 LCLNRDVAFMCSGEATAAGVWLKLEQNFMTKSLTNRIYRKTRLYTCKMEEGTPIRTHITN 374
           L L+ DV      E TA G+W +LE  +M+K+LTN++Y K +LY   M EGT   +H+  
Sbjct: 65  LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNV 124

Query: 375 F 377
           F
Sbjct: 125 F 125



 Score = 56.6 bits (135), Expect(2) = 4e-28
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
 Frame = +1

Query: 496 LRDVEVKVEDEDQAILLLLSLPKSYEAIVQTLTLLDSTHLSFEEVRTA-LLSDELRKKAS 672
           L ++ VK+E+ED+AILLL SLP SY+ +  T+ L   T +  ++V +A LL++++RKK  
Sbjct: 132 LANLGVKIEEEDKAILLLNSLPSSYDNLATTI-LHGKTTIELKDVTSALLLNEKMRKKPE 190

Query: 673 G--------GDKDSKEQAQALFVRXXXXXXXXXXXXMR---CFKCGEEGHLKAECPNKK 816
                    G   S +++   + R             R   C+ C + GH K +CPN +
Sbjct: 191 NQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPR 249


>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 424

 Score = 87.0 bits (214), Expect(2) = 2e-27
 Identities = 45/124 (36%), Positives = 74/124 (59%)
 Frame = +3

Query: 12  VGKVEIEKFDGQNDFSHWRMQMHNLLVTQDLSVALDGKMNQGDMSEDDWKVLDAKARAYI 191
           V K E+ KFDG  +F  W+M++ +LL  Q +S AL+  M +  M    W+ + A+A A I
Sbjct: 6   VSKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALEETMPE-KMDAGKWEEMKAQAAATI 64

Query: 192 LLCLNRDVAFMCSGEATAAGVWLKLEQNFMTKSLTNRIYRKTRLYTCKMEEGTPIRTHIT 371
            L L+  V +    E T+  +W+KL   +M+KSLT+++Y K +LY  +M+E + +R H+ 
Sbjct: 65  RLSLSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVD 124

Query: 372 NFER 383
            F +
Sbjct: 125 VFNQ 128



 Score = 62.4 bits (150), Expect(2) = 2e-27
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
 Frame = +1

Query: 493 DLRDVEVKVEDEDQAILLLLSLPKSYEAIVQTLTLLDSTHLSFEEVRTALLSDELRKKAS 672
           DL  ++VK++DED+AI+LL SLP SYE +V  LT    T  +  E+ ++LL+ +LR+   
Sbjct: 132 DLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTHGKDTIKT--EIISSLLARDLRRSKK 189

Query: 673 GGDKDSKEQAQALFVR----XXXXXXXXXXXXMRCFKCGEEGHLKAECP 807
               ++  QA++L V+                 RC+KC E GH++  CP
Sbjct: 190 NEAMEA-SQAESLLVKAKHDHEAGVSKSKEKGARCYKCHEFGHIRRNCP 237


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 91.7 bits (226), Expect(2) = 3e-27
 Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
 Frame = +3

Query: 6   MKVGKVEIEKFDGQNDFSHWRMQMHNLLVTQDLSVALDGKMNQGDMSEDDWKV-LDAKAR 182
           M   K ++EKF G+NDF   R++M  LLV Q L  AL G+ N     ++  K+ L  KA 
Sbjct: 1   MGTAKFDVEKFTGKNDFGLXRLKMRALLVQQGLQDALLGEKNLPSTMQEKQKIELLEKAH 60

Query: 183 AYILLCLNRDVAFMCSGEATAAGVWLKLEQNFMTKSLTNRIYRKTRLYTCKMEEGTPIRT 362
           + I+L L   V    +   +AA VWLKLE  +MTKSL NR+++K +LYT KM  G  I  
Sbjct: 61  SAIILSLGDTVLREXAKAKSAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIEX 120

Query: 363 HITNFER 383
           H+ +F +
Sbjct: 121 HLDHFNK 127



 Score = 57.0 bits (136), Expect(2) = 3e-27
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
 Frame = +1

Query: 493 DLRDVEVKVEDEDQAILLLLSLPKSYEAIVQTLTLLDSTHLSFEEVRTALLSDELRKKAS 672
           DL ++++ + DED+AILLL SL  SY  +   + +     L+F+EV++ L + EL+K+  
Sbjct: 131 DLENIDITISDEDKAILLLTSLDASYTNMKDAI-MYGRDSLTFDEVQSILHARELQKQ-- 187

Query: 673 GGDKDSKEQAQALFVR-----------XXXXXXXXXXXXMRCFKCGEEGHLKAECPNKK 816
             ++  +E  + L +R                        +CF C +EGH K +CP+++
Sbjct: 188 --EESKEESGEGLNIRGRSEKREKKGKNSKSRSKSKTKKFKCFICHKEGHFKKDCPDRR 244


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 425

 Score = 85.1 bits (209), Expect(2) = 3e-27
 Identities = 46/127 (36%), Positives = 74/127 (58%)
 Frame = +3

Query: 3   SMKVGKVEIEKFDGQNDFSHWRMQMHNLLVTQDLSVALDGKMNQGDMSEDDWKVLDAKAR 182
           +M V K E+ KFDG  +F  W+M++ +LL  Q +S AL+  M +  M    W+ + A+A 
Sbjct: 3   AMVVSKFEVVKFDGTGNFILWQMRLKDLLAQQGISKALEETMPE-KMDAGKWEEMKAQAA 61

Query: 183 AYILLCLNRDVAFMCSGEATAAGVWLKLEQNFMTKSLTNRIYRKTRLYTCKMEEGTPIRT 362
           A I L L+  V +    E T   +W KL   +M+KSLT+++Y K +LY  +M+E + +R 
Sbjct: 62  ATIRLSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRK 121

Query: 363 HITNFER 383
           H+  F +
Sbjct: 122 HVDVFNQ 128



 Score = 63.5 bits (153), Expect(2) = 3e-27
 Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
 Frame = +1

Query: 493 DLRDVEVKVEDEDQAILLLLSLPKSYEAIVQTLTLLDSTHLSFEEVRTALLSDELRKKAS 672
           DL  ++VK++DED AI+LL SLP SYE +V TL     T +  EE  ++LL+ +LR +++
Sbjct: 132 DLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKDT-VKTEEKISSLLARDLR-RSN 189

Query: 673 GGDKDSKEQAQALFVR----XXXXXXXXXXXXMRCFKCGEEGHLKAECP 807
             +     QA++L V+                 RC+KC E GH++  CP
Sbjct: 190 KNEAMEASQAESLLVKAKHDHEAGVSKSKDKGARCYKCHEFGHIRRNCP 238