BLASTX nr result
ID: Aconitum21_contig00005285
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum21_contig00005285
(4051 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAY85235.1| RNA polymerase II second largest subunit [Tetrace... 1613 0.0
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 1606 0.0
gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p... 1606 0.0
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu... 1604 0.0
gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo... 1601 0.0
>gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
Length = 951
Score = 1613 bits (4177), Expect = 0.0
Identities = 801/833 (96%), Positives = 812/833 (97%)
Frame = +1
Query: 598 KVFIGKVPIMLRSSYCTLFNNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 777
KVFIGKVPIMLRSSYCT++ NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV
Sbjct: 47 KVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 106
Query: 778 YVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 957
YVFKKRQPNKYAYV EVRSMAESQNRPPS MFVRMLSR SAKGGSSGQYIRATLPYIRTE
Sbjct: 107 YVFKKRQPNKYAYVAEVRSMAESQNRPPSGMFVRMLSRASAKGGSSGQYIRATLPYIRTE 166
Query: 958 IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 1137
IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS
Sbjct: 167 IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 226
Query: 1138 TVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCAIGRRNEDDRD 1317
TVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCAIGRR EDDRD
Sbjct: 227 TVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRD 286
Query: 1318 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKY 1497
HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGY QKCVDNGKDVNLQFAIKAKTITSGLKY
Sbjct: 287 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346
Query: 1498 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 1677
SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG
Sbjct: 347 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 406
Query: 1678 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 1857
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI
Sbjct: 407 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 466
Query: 1858 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 2037
FVNGCWVGIHRNP+LLVKTLRQLRRQVDVNTEVGVIRDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 467 FVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIV 526
Query: 2038 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXXMISMTINDLITAST 2217
EKQRLLIKKKDIRALQQRES E+ GWHDLV +GYIEYVD MISMTINDLITA
Sbjct: 527 EKQRLLIKKKDIRALQQRESPEEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLITAKL 586
Query: 2218 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 2397
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQ+PRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 587 NPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQTPRNTYQSAMGKQAMGIYVTNYQLR 646
Query: 2398 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 2577
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 647 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 706
Query: 2578 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 2757
GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 707 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 766
Query: 2758 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 2937
DVIIGKTTPIAQDE SQG ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 767 DVIIGKTTPIAQDE-SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 825
Query: 2938 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMT 3096
S+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMT
Sbjct: 826 SIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 878
Score = 151 bits (381), Expect = 2e-33
Identities = 70/72 (97%), Positives = 72/72 (100%)
Frame = +3
Query: 3168 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTA 3347
GQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRL+A
Sbjct: 880 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSA 939
Query: 3348 MIFLGPTYYQRL 3383
MIFLGPTYYQRL
Sbjct: 940 MIFLGPTYYQRL 951
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 1606 bits (4158), Expect = 0.0
Identities = 797/833 (95%), Positives = 813/833 (97%)
Frame = +1
Query: 598 KVFIGKVPIMLRSSYCTLFNNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 777
KVFIGKVPIMLRSSYCT++ NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV
Sbjct: 153 KVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 212
Query: 778 YVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 957
YVFKKRQPNKYAYV EVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE
Sbjct: 213 YVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 272
Query: 958 IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 1137
IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS
Sbjct: 273 IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 332
Query: 1138 TVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCAIGRRNEDDRD 1317
TVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCA+GRR EDDRD
Sbjct: 333 TVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRD 392
Query: 1318 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKY 1497
HYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKY
Sbjct: 393 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 452
Query: 1498 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 1677
SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG
Sbjct: 453 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 512
Query: 1678 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 1857
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ+TKI
Sbjct: 513 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKI 572
Query: 1858 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 2037
FVNGCWVGIHRNP+LLVKTLRQLRRQVDVNTEVGVIRDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 573 FVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIV 632
Query: 2038 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXXMISMTINDLITAST 2217
EKQRLLIKK+DIRALQ RES ED GWHDLV++G+IEYVD MISMTINDLI+A
Sbjct: 633 EKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARL 692
Query: 2218 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 2397
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 693 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 752
Query: 2398 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 2577
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 753 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 812
Query: 2578 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 2757
GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 813 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 872
Query: 2758 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 2937
DVIIGKTTPI+QD+ SQG ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 873 DVIIGKTTPISQDD-SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 931
Query: 2938 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMT 3096
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMT
Sbjct: 932 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 984
Score = 402 bits (1034), Expect = e-109
Identities = 193/194 (99%), Positives = 194/194 (100%)
Frame = +3
Query: 3168 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTA 3347
GQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTA
Sbjct: 986 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1045
Query: 3348 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 3527
MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA
Sbjct: 1046 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1105
Query: 3528 AHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 3707
AHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF
Sbjct: 1106 AHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1165
Query: 3708 QELMAMAIAPRMLT 3749
QELMAMAIAPRMLT
Sbjct: 1166 QELMAMAIAPRMLT 1179
Score = 97.8 bits (242), Expect(2) = 2e-31
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +2
Query: 323 SDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 466
SDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL
Sbjct: 80 SDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 127
Score = 67.8 bits (164), Expect(2) = 2e-31
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 121 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE 216
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE
Sbjct: 27 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE 58
>gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
Length = 951
Score = 1606 bits (4158), Expect = 0.0
Identities = 797/833 (95%), Positives = 813/833 (97%)
Frame = +1
Query: 598 KVFIGKVPIMLRSSYCTLFNNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 777
KVFIGKVPIMLRSSYCT++ NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV
Sbjct: 47 KVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 106
Query: 778 YVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 957
YVFKKRQPNKYAYV EVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE
Sbjct: 107 YVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 166
Query: 958 IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 1137
IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS
Sbjct: 167 IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 226
Query: 1138 TVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCAIGRRNEDDRD 1317
TVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCA+GRR EDDRD
Sbjct: 227 TVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRD 286
Query: 1318 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKY 1497
HYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKY
Sbjct: 287 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 346
Query: 1498 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 1677
SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG
Sbjct: 347 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 406
Query: 1678 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 1857
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ+TKI
Sbjct: 407 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKI 466
Query: 1858 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 2037
FVNGCWVGIHRNP+LLVKTLRQLRRQVDVNTEVGVIRDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 467 FVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIV 526
Query: 2038 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXXMISMTINDLITAST 2217
EKQRLLIKK+DIRALQ RES ED GWHDLV++G+IEYVD MISMTINDLI+A
Sbjct: 527 EKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARL 586
Query: 2218 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 2397
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 587 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 646
Query: 2398 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 2577
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 647 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 706
Query: 2578 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 2757
GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 707 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 766
Query: 2758 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 2937
DVIIGKTTPI+QD+ SQG ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 767 DVIIGKTTPISQDD-SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 825
Query: 2938 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMT 3096
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMT
Sbjct: 826 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 878
Score = 152 bits (385), Expect = 6e-34
Identities = 71/72 (98%), Positives = 72/72 (100%)
Frame = +3
Query: 3168 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTA 3347
GQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTA
Sbjct: 880 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 939
Query: 3348 MIFLGPTYYQRL 3383
MIFLGPTYYQRL
Sbjct: 940 MIFLGPTYYQRL 951
>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
Length = 923
Score = 1604 bits (4153), Expect = 0.0
Identities = 798/833 (95%), Positives = 808/833 (96%)
Frame = +1
Query: 598 KVFIGKVPIMLRSSYCTLFNNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 777
KVFIGKVPIMLRSSYCTLF NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV
Sbjct: 19 KVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 78
Query: 778 YVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 957
YVFKKRQPNKYAYV EVRSMAESQNRPPSSMFVRMLSR SAKGGSSGQYIRATLPYIRTE
Sbjct: 79 YVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTE 138
Query: 958 IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 1137
IPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS
Sbjct: 139 IPIIIVFRALGFVADKDILEHICYDFLDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 198
Query: 1138 TVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCAIGRRNEDDRD 1317
TVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCA+GRR EDDRD
Sbjct: 199 TVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRD 258
Query: 1318 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKY 1497
HYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGK+VNLQFAIKAKTITSGLKY
Sbjct: 259 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKEVNLQFAIKAKTITSGLKY 318
Query: 1498 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 1677
SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG
Sbjct: 319 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 378
Query: 1678 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 1857
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI
Sbjct: 379 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 438
Query: 1858 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 2037
FVNGCWVGIHRNPELLV TLR+LRRQVDVNTEVGVIRDI LKELRLYTDYGRCSRPLFIV
Sbjct: 439 FVNGCWVGIHRNPELLVNTLRKLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIV 498
Query: 2038 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXXMISMTINDLITAST 2217
EKQRLLIKKKDIRALQQRE+ ED GWHDLV +GYIEYVD MISMTINDL+TA
Sbjct: 499 EKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVTARL 558
Query: 2218 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 2397
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 559 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 618
Query: 2398 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 2577
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 619 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 678
Query: 2578 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 2757
GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 679 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 738
Query: 2758 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 2937
DVIIGKTTPIAQ+E QG ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 739 DVIIGKTTPIAQEE-PQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 797
Query: 2938 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMT 3096
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMT
Sbjct: 798 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 850
Score = 150 bits (378), Expect = 4e-33
Identities = 69/72 (95%), Positives = 72/72 (100%)
Frame = +3
Query: 3168 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTA 3347
GQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+L+A
Sbjct: 852 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSA 911
Query: 3348 MIFLGPTYYQRL 3383
MIFLGPTYYQRL
Sbjct: 912 MIFLGPTYYQRL 923
>gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
Length = 865
Score = 1601 bits (4146), Expect = 0.0
Identities = 795/828 (96%), Positives = 809/828 (97%)
Frame = +1
Query: 598 KVFIGKVPIMLRSSYCTLFNNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 777
KVFIGKVPIMLRSSYCTL+ NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV
Sbjct: 39 KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 98
Query: 778 YVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 957
YVFKKRQPNKYAYV EVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE
Sbjct: 99 YVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 158
Query: 958 IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 1137
IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS
Sbjct: 159 IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGS 218
Query: 1138 TVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCAIGRRNEDDRD 1317
TVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCA+GRR EDDRD
Sbjct: 219 TVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRD 278
Query: 1318 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYAQKCVDNGKDVNLQFAIKAKTITSGLKY 1497
HYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFAIKAKTITSGLKY
Sbjct: 279 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 338
Query: 1498 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 1677
SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG
Sbjct: 339 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWG 398
Query: 1678 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 1857
MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI
Sbjct: 399 MMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKI 458
Query: 1858 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIKLKELRLYTDYGRCSRPLFIV 2037
FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDI+LKELRLYTDYGRCSRPLFIV
Sbjct: 459 FVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIV 518
Query: 2038 EKQRLLIKKKDIRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXXMISMTINDLITAST 2217
EKQRLLIKKKDIRALQQRES+E+ GWHDLV +G+IEYVD MISMTINDL+TA
Sbjct: 519 EKQRLLIKKKDIRALQQRESSEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARL 578
Query: 2218 NPEEAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 2397
NPEEAYS TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR
Sbjct: 579 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 638
Query: 2398 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 2577
MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 639 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 698
Query: 2578 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 2757
GFFRSLFFRSYRDEEKKMGTLVKEDFGRP+RENTMGMRHGSYDKLDDDGLAPPGTRVSGE
Sbjct: 699 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPSRENTMGMRHGSYDKLDDDGLAPPGTRVSGE 758
Query: 2758 DVIIGKTTPIAQDEASQGLASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 2937
DVIIGKTTPIAQD+ SQG +SRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR
Sbjct: 759 DVIIGKTTPIAQDD-SQGQSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 817
Query: 2938 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAI 3081
SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAI
Sbjct: 818 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 865