BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00001274
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   178   3e-43
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   175   3e-42
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   171   6e-41
ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ri...   171   6e-41
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi...   171   7e-41

>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  178 bits (452), Expect = 3e-43
 Identities = 94/139 (67%), Positives = 112/139 (80%)
 Frame = +3

Query: 3   SNEEEVKRLWRVRRTVMEMLKDRAYAVLDDEINMSQSEFLRRYGSGDQSTVKREDLVISK 182
           ++EEE+ RL+R+R+TVM+MLKDR Y V D EINM++ +F+ ++G      +KREDLVI+K
Sbjct: 3   ASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGEN----MKREDLVINK 58

Query: 183 QKRSDVKATDNDAHIYVFFPEEPKVGVKTMKTYTNRMKSEDVFRAILVVQQALTPFARNC 362
            KR     TD+   IYVFFPEE KVGVKTMKTYTNRMKSE+VFRAILVVQQ LTPFAR C
Sbjct: 59  AKR-----TDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTC 113

Query: 363 ISEISGKFHLETFQEAELL 419
           I+EIS KFHLE FQEAELL
Sbjct: 114 INEISTKFHLEVFQEAELL 132


>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
           predicted protein [Populus trichocarpa]
          Length = 206

 Score =  175 bits (444), Expect = 3e-42
 Identities = 94/137 (68%), Positives = 109/137 (79%)
 Frame = +3

Query: 9   EEEVKRLWRVRRTVMEMLKDRAYAVLDDEINMSQSEFLRRYGSGDQSTVKREDLVISKQK 188
           EEE+KRL R+R+TVM+MLKDR Y V D EI M++ +F  +YG+     +KREDLVI+K K
Sbjct: 5   EEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNN----MKREDLVINKTK 60

Query: 189 RSDVKATDNDAHIYVFFPEEPKVGVKTMKTYTNRMKSEDVFRAILVVQQALTPFARNCIS 368
           R+D     +   IYVFFPEE KVGVKTMKTYTNRMKSE+VFRAILVVQQ LTPFAR CI+
Sbjct: 61  RND-----SSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIN 115

Query: 369 EISGKFHLETFQEAELL 419
           EIS KFHLE FQEAELL
Sbjct: 116 EISTKFHLEVFQEAELL 132


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  171 bits (433), Expect = 6e-41
 Identities = 85/137 (62%), Positives = 108/137 (78%)
 Frame = +3

Query: 9   EEEVKRLWRVRRTVMEMLKDRAYAVLDDEINMSQSEFLRRYGSGDQSTVKREDLVISKQK 188
           EEE+KRL+R+++T+M+MLKDR Y + D E+ M++ +F+R++G      +KREDLV  K K
Sbjct: 4   EEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDN----MKREDLVTLKVK 59

Query: 189 RSDVKATDNDAHIYVFFPEEPKVGVKTMKTYTNRMKSEDVFRAILVVQQALTPFARNCIS 368
           R+D     N   +Y+FFP+E KVGVKTMK YTNRMKSE+V+RAILVVQQ LTPFAR CIS
Sbjct: 60  RND-----NSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCIS 114

Query: 369 EISGKFHLETFQEAELL 419
           EIS KFHLE FQEAE+L
Sbjct: 115 EISSKFHLEVFQEAEML 131


>ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 225

 Score =  171 bits (433), Expect = 6e-41
 Identities = 92/152 (60%), Positives = 112/152 (73%), Gaps = 14/152 (9%)
 Frame = +3

Query: 6   NEEEVKRLWRVRRTVMEMLKDRAYAVLDDEINMSQSEFLRRYGSGDQSTVKREDLVISKQ 185
           +E+E+KRL+R+RRTVM+MLKDR Y V D EIN+++ +F  +YG      +KREDLVI K 
Sbjct: 4   SEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDN----MKREDLVIHKS 59

Query: 186 KR--------------SDVKATDNDAHIYVFFPEEPKVGVKTMKTYTNRMKSEDVFRAIL 323
           KR              + ++A      IYVFFPEE KVGVKTMKTYTNRMKSE+VFRAIL
Sbjct: 60  KRDGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAIL 119

Query: 324 VVQQALTPFARNCISEISGKFHLETFQEAELL 419
           VVQQ+LTPFAR CI+EI+ KFHLE FQE+ELL
Sbjct: 120 VVQQSLTPFARTCIAEIASKFHLEVFQESELL 151


>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           II subunit E [Arabidopsis thaliana]
          Length = 205

 Score =  171 bits (432), Expect = 7e-41
 Identities = 85/137 (62%), Positives = 108/137 (78%)
 Frame = +3

Query: 9   EEEVKRLWRVRRTVMEMLKDRAYAVLDDEINMSQSEFLRRYGSGDQSTVKREDLVISKQK 188
           EEE+KRL+R+++T+M+ML+DR Y + D E+ M++ +F+R++G      +KREDLV  K K
Sbjct: 4   EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDN----MKREDLVTLKAK 59

Query: 189 RSDVKATDNDAHIYVFFPEEPKVGVKTMKTYTNRMKSEDVFRAILVVQQALTPFARNCIS 368
           R+D     N   +Y+FFP+E KVGVKTMK YTNRMKSE+VFRAILVVQQ LTPFAR CIS
Sbjct: 60  RND-----NSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCIS 114

Query: 369 EISGKFHLETFQEAELL 419
           EIS KFHLE FQEAE+L
Sbjct: 115 EISSKFHLEVFQEAEML 131